17-03-18 06:23:21.934 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:23:21.934 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 06:23:21.934 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 06:23:21.934 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:21.934 -07 000000447 INF: FPGA: Recv YRDPOS 153255
17-03-18 06:23:21.944 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:23:21.944 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:21.944 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 06:23:21.944 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 06:23:21.944 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 06:23:22.064 -07 000000502 INF: FPGA: Recv YMVTO 154379 872
17-03-18 06:23:22.064 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 114 ms to get response, and 115 ms overall
17-03-18 06:23:22.064 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:23:22.064 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.550 mm) should take 878 steps, but required 872 steps (0.545 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 06:23:22.064 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 115 ms, distance = 0.550 mm, average velocity = 4.778 mm/sec
17-03-18 06:23:25.064 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:23:25.064 -07 000000569 INF: FPGA: Recv YRDPOS 154378
17-03-18 06:23:25.074 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:25.074 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:23:25.094 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:23:25.094 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = -1 counts (0.000 mm)
17-03-18 06:23:25.094 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3159 ms
17-03-18 06:23:25.104 -07 000000610 INF: =================== Cycle #149, Flow Cell Temp 60° ===================
17-03-18 06:23:25.104 -07 000000610 INF: =================== Cycle #149, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 06:23:25.104 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 06:23:25.104 -07 000000438 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:23:25.114 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:23:25.114 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:23:25.114 -07 000000461 INF: FPGA: Recv TEC2EN 
17-03-18 06:23:25.124 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:23:25.124 -07 000000610 INF: =================== Cycle #149, Flow Cell Temp 60° ===================
17-03-18 06:23:25.124 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:23:25.124 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:23:25.124 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:23:25.154 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:23:25.154 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 06:23:25.154 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:23:25.454 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:23:25.474 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:23:25.474 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:23:25.524 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:23:25.544 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:23:25.544 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:23:25.644 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:23:25.644 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:23:25.644 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:23:25.674 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:23:25.674 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:23:25.674 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:23:25.804 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:23:25.844 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:23:26.854 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:23:26.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:23:27.084 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.988112,
17-03-18 06:23:28.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:29.004 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:23:29.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:29.454 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:23:29.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:29.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:23:29.904 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:23:29.904 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:23:30.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:23:30.064 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:23:30.064 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:23:30.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:23:30.224 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:23:30.224 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:23:30.224 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:23:30.354 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:23:30.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:23:30.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:30.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:23:30.844 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:23:30.844 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:23:31.854 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:23:31.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:23:32.064 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:23:32.064 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 06:23:32.064 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:23:32.084 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:23:32.084 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 06:23:32.094 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 06:23:32.234 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:23:32.254 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 06:23:32.254 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 06:23:32.304 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:23:32.324 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:23:32.324 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:23:32.424 -07 000000610 INF: =================== Cycle #149, Pumping Reagent CMS (4) ===================
17-03-18 06:23:32.424 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:23:32.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:23:32.444 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.99219,
17-03-18 06:23:32.454 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:23:32.454 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:23:32.454 -07 000000610 INF: =================== Cycle #149, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 06:23:32.584 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:23:32.624 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:23:34.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:34.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:23:34.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:34.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:23:34.544 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:23:34.544 -07 000000610 INF: =================== Cycle #149, Pumping Reagent CMS (4) ===================
17-03-18 06:23:34.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:23:34.704 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:23:34.704 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:23:34.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:23:34.864 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:23:34.864 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:23:34.864 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:23:34.994 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:23:35.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:23:35.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:35.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:23:35.484 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:23:35.484 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:23:36.704 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:23:36.704 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:23:36.704 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:23:36.724 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:23:36.724 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 06:23:36.724 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 06:23:36.854 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:23:36.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:23:36.874 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:23:36.894 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 06:23:36.894 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 06:23:36.944 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:23:36.964 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:23:36.964 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:23:37.064 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:23:37.064 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:23:37.064 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:23:37.094 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:23:37.094 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:23:37.094 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:23:37.224 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:23:37.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:23:37.814 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.988112,
17-03-18 06:23:38.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:38.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:23:38.164 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:23:38.164 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:23:38.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:23:38.324 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:23:38.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:23:38.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:23:38.484 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:23:38.484 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:23:38.484 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:23:38.614 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:23:38.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:23:39.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:39.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:23:39.104 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:23:39.104 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:23:39.104 -07 000000629 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:23:39.104 -07 000000455 INF: WaitCommand(10000) start
17-03-18 06:23:39.104 -07 000000629 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:23:40.324 -07 000000629 INF: AsyncDelayTimer waited 1215ms
17-03-18 06:23:40.324 -07 000000629 INF: LanePump: Xmit /1?\r
17-03-18 06:23:40.354 -07 000000629 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:23:40.354 -07 000000629 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:23:40.484 -07 000000629 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:23:40.524 -07 000000629 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:23:41.854 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:23:41.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:23:42.054 -07 000000629 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:42.084 -07 000000629 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:23:42.504 -07 000000629 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:42.534 -07 000000629 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:23:42.534 -07 000000629 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:23:42.534 -07 000000629 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:23:42.534 -07 000000629 INF: ===================  ===================
17-03-18 06:23:43.184 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.012614,
17-03-18 06:23:46.854 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:23:46.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:23:48.554 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.009895,
17-03-18 06:23:49.114 -07 000000455 INF: WaitCommand(10000) end
17-03-18 06:23:49.114 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:23:49.114 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 06:23:49.114 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:23:49.154 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:23:49.154 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:23:49.154 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:23:49.284 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 06:23:49.324 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:23:51.854 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:23:51.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1954, R2=2033, Total=3987. Warn if over 250 bubbles per interval.
17-03-18 06:23:53.924 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.999021,
17-03-18 06:23:55.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:55.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:23:55.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:55.934 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:23:56.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:56.384 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:23:56.804 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:56.834 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:23:56.854 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 06:23:56.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:23:57.254 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:57.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:23:57.284 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 06:23:57.284 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:23:57.414 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:23:57.444 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:23:57.444 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:23:57.574 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:23:57.604 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:23:57.604 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:23:57.604 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:23:57.734 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:23:57.764 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:23:58.194 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:23:58.224 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:23:58.224 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:23:58.224 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:23:59.304 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.986717,
17-03-18 06:23:59.444 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:23:59.444 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 06:23:59.444 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:23:59.464 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:23:59.464 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 06:23:59.464 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 06:23:59.674 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:23:59.694 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 06:23:59.694 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 06:23:59.744 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:23:59.764 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:23:59.764 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:23:59.864 -07 000000610 INF: =================== Cycle #149, Pumping Reagent IMT (1) ===================
17-03-18 06:23:59.864 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:23:59.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:23:59.894 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:23:59.894 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:23:59.894 -07 000000610 INF: =================== Cycle #149, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 06:24:00.024 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:24:00.064 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:24:01.504 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:24:01.534 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:24:01.854 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:24:01.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:24:01.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:24:01.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:24:01.984 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:24:01.984 -07 000000610 INF: =================== Cycle #149, Pumping Reagent IMT (1) ===================
17-03-18 06:24:02.114 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:24:02.144 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:24:02.144 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:24:02.274 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:24:02.304 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:24:02.304 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:24:02.304 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:24:02.434 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:24:02.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:24:02.894 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:24:02.924 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:24:02.924 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:24:02.924 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:24:04.144 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:24:04.144 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:24:04.144 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:24:04.164 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:24:04.164 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 06:24:04.164 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:24:04.394 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:24:04.414 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 06:24:04.414 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 06:24:04.464 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:24:04.484 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:24:04.484 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:24:04.584 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:24:04.584 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:24:04.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:24:04.614 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:24:04.614 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:24:04.614 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:24:04.664 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.996267,
17-03-18 06:24:04.744 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:24:04.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:24:05.654 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:24:05.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:24:05.684 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:24:05.684 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:24:05.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:24:05.844 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:24:05.844 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:24:05.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:24:06.004 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:24:06.004 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:24:06.004 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:24:06.134 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:24:06.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:24:06.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:24:06.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:24:06.624 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:24:06.624 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:24:06.624 -07 000000610 INF: =================== Cycle #149, Flow Cell Temp 65° ===================
17-03-18 06:24:06.624 -07 000000610 INF: =================== Cycle #149, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 06:24:06.624 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 06:24:06.624 -07 000000462 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:24:06.634 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:24:06.634 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:24:06.634 -07 000000438 INF: FPGA: Recv TEC2EN 
17-03-18 06:24:06.644 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:24:06.644 -07 000000610 INF: =================== Cycle #149, Flow Cell Temp 65° ===================
17-03-18 06:24:06.644 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:24:06.644 -07 000000610 INF: WaitCommand(30000) start
17-03-18 06:24:06.854 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:24:06.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:24:10.034 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.03576,
17-03-18 06:24:11.854 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:24:11.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:24:15.404 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.005817,
17-03-18 06:24:16.854 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:24:16.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:24:20.784 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.008536,
17-03-18 06:24:21.854 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:24:21.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:24:26.144 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.963579,
17-03-18 06:24:26.854 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:24:26.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:24:31.514 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.969015,
17-03-18 06:24:31.854 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:24:31.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:24:36.654 -07 000000610 INF: WaitCommand(30000) end
17-03-18 06:24:36.654 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:24:36.654 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 06:24:36.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:24:36.784 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:24:36.784 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:24:36.784 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:24:36.854 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:24:36.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:24:36.884 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.989471,
17-03-18 06:24:36.914 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 06:24:36.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:24:37.494 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:24:37.524 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:24:37.524 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 06:24:37.524 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:24:37.654 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:24:37.684 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:24:37.684 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:24:37.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:24:37.844 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:24:37.844 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:24:37.844 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:24:37.974 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:24:38.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:24:38.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:24:38.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:24:38.464 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:24:38.464 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:24:38.464 -07 000000569 INF: WaitCommand(30000) start
17-03-18 06:24:38.464 -07 000000447 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:24:38.464 -07 000000447 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:24:39.684 -07 000000447 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:24:39.684 -07 000000447 INF: LanePump: Xmit /1?\r
17-03-18 06:24:39.714 -07 000000447 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:24:39.714 -07 000000447 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:24:39.844 -07 000000447 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:24:39.884 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:24:41.854 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:24:41.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:24:42.224 -07 000000447 INF: LanePump: Xmit /1Q\r
17-03-18 06:24:42.254 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:24:42.254 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.977204,
17-03-18 06:24:42.674 -07 000000447 INF: LanePump: Xmit /1Q\r
17-03-18 06:24:42.704 -07 000000447 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:24:42.704 -07 000000447 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 06:24:42.704 -07 000000447 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:24:42.704 -07 000000447 INF: ===================  ===================
17-03-18 06:24:46.854 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:24:46.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:24:47.624 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.986717,
17-03-18 06:24:51.854 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:24:51.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:24:52.994 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.000345,
17-03-18 06:24:56.854 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:24:56.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:24:58.364 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.977204,
17-03-18 06:25:01.854 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:25:01.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:25:03.734 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.99219,
17-03-18 06:25:06.854 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:25:06.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:25:08.474 -07 000000569 INF: WaitCommand(30000) end
17-03-18 06:25:08.474 -07 000000610 INF: =================== Cycle #149, Flow Cell Temp 22° ===================
17-03-18 06:25:08.474 -07 000000610 INF: =================== Cycle #149, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 06:25:08.474 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 06:25:08.474 -07 000000462 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:25:08.484 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:25:08.484 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:25:08.484 -07 000000438 INF: FPGA: Recv TEC2EN 
17-03-18 06:25:08.494 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:08.494 -07 000000610 INF: =================== Cycle #149, Flow Cell Temp 22° ===================
17-03-18 06:25:08.494 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:25:08.494 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:25:08.494 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:25:08.494 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:25:08.534 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:25:08.534 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:25:08.534 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:25:08.664 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:25:08.704 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:25:09.114 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.994908,
17-03-18 06:25:11.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:25:11.854 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:25:11.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1955, R2=2034, Total=3989. Warn if over 250 bubbles per interval.
17-03-18 06:25:11.864 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:25:12.284 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:25:12.314 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:25:12.734 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:25:12.764 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:25:12.764 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:25:12.764 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:25:12.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:25:12.924 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:25:12.924 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:25:13.054 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:25:13.084 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:25:13.084 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:25:13.084 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:25:13.214 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:25:13.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:25:13.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:25:13.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:25:13.704 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:25:13.704 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:25:14.474 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.975845,
17-03-18 06:25:14.924 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 06:25:14.924 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 06:25:14.924 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:25:14.944 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:25:14.944 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 06:25:14.944 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 06:25:15.094 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:25:15.114 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:25:15.114 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:25:15.164 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:25:15.184 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:25:15.184 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:25:15.284 -07 000000610 INF: =================== Cycle #149, Pumping Reagent USM (2) ===================
17-03-18 06:25:15.284 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:25:15.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:25:15.314 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:25:15.314 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:25:15.314 -07 000000610 INF: =================== Cycle #149, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 06:25:15.444 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:25:15.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:25:16.854 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 3
17-03-18 06:25:16.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=3, R2=4, Total=7. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1958, R2=2038, Total=3996. Warn if over 250 bubbles per interval.
17-03-18 06:25:16.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:25:16.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:25:17.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:25:17.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:25:17.404 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:25:17.404 -07 000000610 INF: =================== Cycle #149, Pumping Reagent USM (2) ===================
17-03-18 06:25:17.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:25:17.564 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:25:17.564 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:25:17.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:25:17.724 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:25:17.724 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:25:17.724 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:25:17.854 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:25:17.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:25:18.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:25:18.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:25:18.344 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:25:18.344 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:25:19.564 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:25:19.564 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:25:19.564 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:25:19.584 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:25:19.584 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 06:25:19.584 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:25:19.734 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:25:19.754 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:25:19.754 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:25:19.804 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:25:19.824 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:25:19.824 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:25:19.844 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.962185,
17-03-18 06:25:19.924 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:25:19.924 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:25:19.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:25:19.954 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:25:19.954 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:25:19.954 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:25:20.084 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:25:20.124 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:25:20.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:25:21.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:25:21.024 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:25:21.024 -07 000000610 INF: =================== Cycle #149, Pumping Reagent PR2 (3) ===================
17-03-18 06:25:21.154 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:25:21.184 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:25:21.184 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:25:21.314 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:25:21.344 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:25:21.344 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:25:21.344 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:25:21.474 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:25:21.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:25:21.854 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 06:25:21.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1959, R2=2038, Total=3997. Warn if over 250 bubbles per interval.
17-03-18 06:25:21.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:25:21.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:25:21.964 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:25:21.964 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:25:21.964 -07 000000447 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:25:21.964 -07 000000579 INF: WaitCommand(10000) start
17-03-18 06:25:21.964 -07 000000447 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:25:23.184 -07 000000447 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:25:23.184 -07 000000447 INF: LanePump: Xmit /1?\r
17-03-18 06:25:23.214 -07 000000447 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:25:23.214 -07 000000447 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:25:23.344 -07 000000447 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:25:23.384 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:25:24.914 -07 000000447 INF: LanePump: Xmit /1Q\r
17-03-18 06:25:24.944 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:25:25.214 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.986717,
17-03-18 06:25:25.364 -07 000000447 INF: LanePump: Xmit /1Q\r
17-03-18 06:25:25.394 -07 000000447 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:25:25.394 -07 000000447 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:25:25.394 -07 000000447 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:25:25.394 -07 000000447 INF: ===================  ===================
17-03-18 06:25:26.854 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 06:25:26.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2038, Total=3998. Warn if over 250 bubbles per interval.
17-03-18 06:25:30.594 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.012614,
17-03-18 06:25:31.854 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:25:31.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:25:31.974 -07 000000579 INF: WaitCommand(10000) end
17-03-18 06:25:31.974 -07 000000610 INF: =================== Cycle #149, Imaging ===================
17-03-18 06:25:31.974 -07 000000610 INF: Imaging Cycle 149: ScanTilesCommand Cycle 149 time start.
17-03-18 06:25:31.974 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 06:25:31.974 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:25:32.004 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:25:32.004 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 06:25:32.004 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 06:25:32.304 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:25:32.324 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:25:32.324 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:25:32.374 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:25:32.394 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:25:32.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:25:32.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:25:32.394 -07 000000608 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 06:25:32.394 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:25:32.394 -07 000000608 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 06:25:32.394 -07 000000569 INF: FPGA: Recv EXLED1ON 
17-03-18 06:25:32.404 -07 000000608 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:25:32.404 -07 000000608 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 06:25:32.404 -07 000000569 INF: FPGA: Recv EXLED1ADCR 23226
17-03-18 06:25:32.414 -07 000000608 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:32.414 -07 000000608 INF: RedLED: Using Red data: Photodiode ADC 23226 --> 7.5 mW (old method), or 205.8 mW (new method). Difference = 198.4 mW
17-03-18 06:25:32.414 -07 000000608 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 06:25:32.414 -07 000000467 INF: FPGA: Recv EXLED1OFF 
17-03-18 06:25:32.424 -07 000000608 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:32.424 -07 000000608 INF: RedLED: LED was on for 20 ms
17-03-18 06:25:32.424 -07 000000608 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 06:25:32.424 -07 000000608 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 06:25:32.424 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:25:32.424 -07 000000608 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 06:25:32.424 -07 000000462 INF: FPGA: Recv EXLED2ON 
17-03-18 06:25:32.434 -07 000000608 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:25:32.434 -07 000000608 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:25:32.434 -07 000000474 INF: FPGA: Recv EXLED1ADCR 2099
17-03-18 06:25:32.444 -07 000000608 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:32.444 -07 000000608 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-18 06:25:32.444 -07 000000608 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 06:25:32.444 -07 000000579 INF: FPGA: Recv EXLED2OFF 
17-03-18 06:25:32.454 -07 000000608 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:32.454 -07 000000608 INF: GreenLED: LED was on for 19 ms
17-03-18 06:25:32.454 -07 000000608 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 06:25:32.454 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:25:32.454 -07 000000455 INF: FPGA: Recv EMCUR 
17-03-18 06:25:32.464 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:25:32.464 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 06:25:32.964 -07 000000579 INF: FPGA: Recv EMOUT
17-03-18 06:25:32.964 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:25:32.964 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 06:25:32.964 -07 000000629 INF: FPGA: Recv EMCUR 
17-03-18 06:25:32.974 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:25:32.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:25:32.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126445626182233. ------
17-03-18 06:25:32.974 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:25:32.974 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17847 mm
17-03-18 06:25:32.974 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:25:32.974 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:25:32.974 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:25:32.974 -07 000000479 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-18 06:25:32.974 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38987, sync = True, waitForSettling = False)
17-03-18 06:25:32.974 -07 000000579 INF: Z Motor: Moving to -0.178471 mm, started at -0.126446 mm, distance = -52.03 um
17-03-18 06:25:32.984 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:25:32.984 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:25:32.994 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:32.994 -07 000000474 INF: FPGA: Recv YRDPOS 154378
17-03-18 06:25:33.004 -07 000000579 INF: FPGA: Xmit ZDACW 38987\n [Z Motor]
17-03-18 06:25:33.004 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:25:33.004 -07 000000479 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:33.004 -07 000000479 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 06:25:33.004 -07 000000479 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:25:33.004 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:25:33.014 -07 000000579 INF: FPGA: 'ZDACW 38987' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:25:33.014 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:25:33.014 -07 000000438 INF: FPGA: Recv ZDACR 38987
17-03-18 06:25:33.024 -07 000000479 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:25:33.024 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:33.024 -07 000000579 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:25:33.184 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:25:33.184 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 06:25:34.704 -07 000000438 INF: FPGA: Recv YMVTO 122701 24777
17-03-18 06:25:34.704 -07 000000479 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1706 ms overall
17-03-18 06:25:34.704 -07 000000479 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:25:34.704 -07 000000479 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 06:25:34.704 -07 000000479 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.467 mm, average velocity = 9.066 mm/sec
17-03-18 06:25:35.964 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.009895,
17-03-18 06:25:36.854 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:25:36.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:25:37.554 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:37.554 -07 000000608 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:25:37.564 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:37.564 -07 000000479 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:37.594 -07 000000479 INF: Y Motor: After move to 59.912609, error = -0.003429, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:25:37.594 -07 000000479 INF: Y Motor: Position error after settling = -7 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 06:25:37.594 -07 000000479 INF: Y Motor: Moved to 59.9092 after 4613 ms
17-03-18 06:25:37.594 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178471 mm (DAC = 38987)
17-03-18 06:25:37.594 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:37.594 -07 000000611 INF: FPGA: Recv ZSGSRD 37073
17-03-18 06:25:37.604 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:25:37.604 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:37.604 -07 000000382 INF: FPGA: Recv ZSGSRD 37077
17-03-18 06:25:37.614 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:25:37.614 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:37.614 -07 000000629 INF: FPGA: Recv ZSGSRD 37065
17-03-18 06:25:37.624 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:37.624 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:37.624 -07 000000474 INF: FPGA: Recv ZSGSRD 37065
17-03-18 06:25:37.634 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:37.634 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:37.634 -07 000000611 INF: FPGA: Recv ZSGSRD 37068
17-03-18 06:25:37.644 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:37.644 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:37.644 -07 000000501 INF: FPGA: Recv ZSGSRD 37075
17-03-18 06:25:37.654 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:37.654 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:37.654 -07 000000569 INF: FPGA: Recv ZSGSRD 37074
17-03-18 06:25:37.664 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:37.664 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:37.664 -07 000000474 INF: FPGA: Recv ZSGSRD 37073
17-03-18 06:25:37.674 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:37.674 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:37.674 -07 000000479 INF: FPGA: Recv ZSGSRD 37066
17-03-18 06:25:37.684 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:37.684 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:37.684 -07 000000501 INF: FPGA: Recv ZSGSRD 37069
17-03-18 06:25:37.694 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:37.694 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:25:37.694 -07 000000579 INF: FPGA: Recv ZPIEZORD 33305
17-03-18 06:25:37.704 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:37.704 -07 000000467 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -8.3 V.
17-03-18 06:25:37.704 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37070 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37071 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37065 (-177.5 uncal um), Max = 37077 (-177.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:25:37.704 -07 000000467 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37070, posNoise = 7, negNoise = 5
17-03-18 06:25:37.704 -07 000000467 INF: Z Motor: After move to -0.178471, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:25:37.704 -07 000000467 INF: Z Motor: Settle wait time = 4616 ms, measure time = 104 ms (allowed 150 ms), total time = 4720 ms
17-03-18 06:25:37.704 -07 000000467 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:25:37.754 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4773 ms
17-03-18 06:25:37.754 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:25:37.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:25:37.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:25:37.754 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:25:37.754 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:25:37.754 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:25:37.754 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:25:37.754 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:25:37.754 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:25:37.784 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-18 06:25:37.784 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:25:37.784 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:25:37.784 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:25:37.804 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:25:37.804 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 06:25:37.804 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:25:37.844 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:25:38.144 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:25:38.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:25:38.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:25:38.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) start.
17-03-18 06:25:38.184 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:25:38.184 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:25:38.184 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 06:25:38.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611889584, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:25:38.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:38.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:25:38.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:25:38.384 -07 000000479 INF: Image SNR check: start
17-03-18 06:25:38.384 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:25:38.384 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:25:38.394 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:25:38.394 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:25:38.394 -07 000000479 INF: Image SNR check: pass  [peak (Max-Min)=125.45]
17-03-18 06:25:38.394 -07 000000479 INF: Autofocus start
17-03-18 06:25:38.394 -07 000000479 INF: MeasureProfile start
17-03-18 06:25:38.404 -07 000000479 INF: MeasureProfile done
17-03-18 06:25:38.404 -07 000000479 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:25:38.404 -07 000000479 INF: Autofocus finished
17-03-18 06:25:38.594 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:25:38.594 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:25:38.594 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9091796875, Z-position -0.178468896106214. ----------
17-03-18 06:25:38.594 -07 000000610 INF: Cycle	149	Tile	1	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:25:38.604 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37484, sync = True, waitForSettling = True)
17-03-18 06:25:38.604 -07 000000610 INF: Z Motor: Moving to -0.171591 mm, started at -0.178469 mm, distance = 6.88 um
17-03-18 06:25:38.604 -07 000000610 INF: FPGA: Xmit ZDACW 37484\n [Z Motor]
17-03-18 06:25:38.604 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:25:38.614 -07 000000610 INF: FPGA: 'ZDACW 37484' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:38.614 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:25:38.614 -07 000000467 INF: FPGA: Recv ZDACR 37484
17-03-18 06:25:38.624 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:38.624 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:25:38.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:38.774 -07 000000501 INF: FPGA: Recv ZSGSRD 36008
17-03-18 06:25:38.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:25:38.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:38.784 -07 000000591 INF: FPGA: Recv ZSGSRD 36006
17-03-18 06:25:38.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:38.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:38.794 -07 000000629 INF: FPGA: Recv ZSGSRD 35995
17-03-18 06:25:38.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:38.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:38.804 -07 000000438 INF: FPGA: Recv ZSGSRD 35997
17-03-18 06:25:38.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:38.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:38.814 -07 000000569 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:25:38.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:38.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:38.824 -07 000000461 INF: FPGA: Recv ZSGSRD 36001
17-03-18 06:25:38.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:38.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:38.834 -07 000000462 INF: FPGA: Recv ZSGSRD 36004
17-03-18 06:25:38.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:38.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:38.844 -07 000000479 INF: FPGA: Recv ZSGSRD 35997
17-03-18 06:25:38.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:38.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:38.854 -07 000000438 INF: FPGA: Recv ZSGSRD 36005
17-03-18 06:25:38.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:38.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:38.864 -07 000000569 INF: FPGA: Recv ZSGSRD 36003
17-03-18 06:25:38.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:38.874 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:25:38.874 -07 000000591 INF: FPGA: Recv ZPIEZORD 31858
17-03-18 06:25:38.884 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:38.884 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -9.1 V.
17-03-18 06:25:38.884 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36002 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36002 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35995 (-170.7 uncal um), Max = 36008 (-170.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:25:38.884 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36002, posNoise = 6, negNoise = 7
17-03-18 06:25:38.884 -07 000000610 INF: Z Motor: After move to -0.171591, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:25:38.884 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:25:38.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:25:38.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:25:38.884 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:25:38.884 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:25:38.884 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:25:38.884 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:25:38.884 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:25:38.884 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:25:38.884 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:25:38.884 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:25:38.884 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:25:38.884 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:25:38.894 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:25:38.894 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:25:38.904 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:25:38.904 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:25:38.904 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 06:25:38.914 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:25:38.914 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:25:38.914 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:25:38.924 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:25:38.924 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 06:25:38.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37661 150\n [Camera]
17-03-18 06:25:39.124 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:25:39.584 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:25:39.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:25:39.584 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:25:39.584 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:25:39.584 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 06:25:39.594 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:25:39.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:25:39.594 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:25:39.704 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:25:39.704 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:25:39.784 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37661 844
17-03-18 06:25:39.924 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:25:39.974 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 06:25:39.974 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:25:39.974 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:39.984 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:25:39.984 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:25:40.094 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:25:40.094 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:25:40.094 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:40.094 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:25:40.104 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-18 06:25:40.154 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:25:40.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:25:40.154 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:25:40.154 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:25:40.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:25:40.154 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:25:40.154 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:25:40.154 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 594915632, 0x0, 391868352) start.
17-03-18 06:25:40.164 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:25:40.164 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:25:40.344 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:25:40.344 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:25:40.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37661 150' command took 2 ms to send, 1403 ms to get response, and 1415 ms overall
17-03-18 06:25:40.344 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:25:40.344 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9091796875, Z-Position -0.171607837538813. ------
17-03-18 06:25:40.344 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:25:40.344 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17779 mm
17-03-18 06:25:40.344 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:25:40.354 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:25:40.354 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:25:40.354 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:25:40.354 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38838, sync = True, waitForSettling = False)
17-03-18 06:25:40.354 -07 000000455 INF: Z Motor: Moving to -0.177789 mm, started at -0.171608 mm, distance = -6.18 um
17-03-18 06:25:40.354 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:25:40.354 -07 000000467 INF: Y Motor: Moving to 60.7426 mm, started at 59.9092 mm, delta = 0.8334 mm
17-03-18 06:25:40.364 -07 000000455 INF: FPGA: Xmit ZDACW 38838\n [Z Motor]
17-03-18 06:25:40.364 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:25:40.374 -07 000000455 INF: FPGA: 'ZDACW 38838' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:25:40.374 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:40.374 -07 000000629 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:25:40.384 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:25:40.384 -07 000000467 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:40.384 -07 000000467 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:25:40.384 -07 000000467 INF: Y Motor: Moving 1333 steps0
17-03-18 06:25:40.384 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:25:40.384 -07 000000629 INF: FPGA: Recv ZDACR 38838
17-03-18 06:25:40.394 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:25:40.394 -07 000000455 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 06:25:40.394 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:25:40.554 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:25:40.554 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:25:40.554 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 594915632, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:25:40.554 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:25:40.554 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:40.564 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:25:40.564 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:25:40.564 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:25:40.564 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:25:40.564 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:40.564 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:25:40.574 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 06:25:40.764 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 06:25:40.764 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 06:25:40.814 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:40.814 -07 000000438 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:25:40.824 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:25:40.824 -07 000000467 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:40.824 -07 000000467 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:25:40.824 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.833 mm, average velocity = 2.148 mm/sec
17-03-18 06:25:41.324 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.004458,
17-03-18 06:25:41.774 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:41.774 -07 000000474 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:25:41.784 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:25:41.784 -07 000000467 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:41.814 -07 000000467 INF: Y Motor: After move to 60.742607, error = -0.011162, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:25:41.814 -07 000000467 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:25:41.814 -07 000000467 INF: Y Motor: Moved to 60.7314 after 1460 ms (table move)
17-03-18 06:25:41.814 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177789 mm (DAC = 38838)
17-03-18 06:25:41.814 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:41.824 -07 000000569 INF: FPGA: Recv ZSGSRD 36959
17-03-18 06:25:41.824 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:25:41.824 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:41.824 -07 000000608 INF: FPGA: Recv ZSGSRD 36960
17-03-18 06:25:41.834 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:25:41.834 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:41.834 -07 000000629 INF: FPGA: Recv ZSGSRD 36962
17-03-18 06:25:41.844 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:41.844 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:41.844 -07 000000591 INF: FPGA: Recv ZSGSRD 36956
17-03-18 06:25:41.854 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:41.854 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:41.854 -07 000000474 INF: FPGA: Recv ZSGSRD 36968
17-03-18 06:25:41.854 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:25:41.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:25:41.864 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:41.864 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:41.864 -07 000000608 INF: FPGA: Recv ZSGSRD 36962
17-03-18 06:25:41.874 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:41.874 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:41.874 -07 000000501 INF: FPGA: Recv ZSGSRD 36974
17-03-18 06:25:41.884 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:41.884 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:41.884 -07 000000461 INF: FPGA: Recv ZSGSRD 36972
17-03-18 06:25:41.894 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:41.894 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:41.894 -07 000000467 INF: FPGA: Recv ZSGSRD 36967
17-03-18 06:25:41.904 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:41.904 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:41.904 -07 000000608 INF: FPGA: Recv ZSGSRD 36970
17-03-18 06:25:41.914 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:41.914 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:25:41.914 -07 000000501 INF: FPGA: Recv ZPIEZORD 33146
17-03-18 06:25:41.924 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:41.924 -07 000000462 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.926 V. Piezo Error = -8.5 V.
17-03-18 06:25:41.924 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36965 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36964 (-176.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36956 (-176.8 uncal um), Max = 36974 (-177.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:25:41.924 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36965, posNoise = 9, negNoise = 9
17-03-18 06:25:41.924 -07 000000462 INF: Z Motor: After move to -0.177789, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:25:41.924 -07 000000462 INF: Z Motor: Settle wait time = 1465 ms, measure time = 102 ms (allowed 150 ms), total time = 1567 ms
17-03-18 06:25:41.924 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:25:41.974 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 06:25:41.974 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:25:41.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:25:41.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:25:41.974 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:25:41.974 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:25:41.974 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:25:41.974 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:25:41.974 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:25:41.984 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:25:41.984 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:25:41.984 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:25:41.994 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 15 ms.
17-03-18 06:25:41.994 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-18 06:25:42.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:25:42.044 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:25:42.344 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:25:42.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:25:42.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:25:42.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) start.
17-03-18 06:25:42.384 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:25:42.384 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 06:25:42.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:25:42.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1111624864, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:25:42.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:42.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:25:42.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:25:42.584 -07 000000467 INF: Autofocus start
17-03-18 06:25:42.584 -07 000000467 INF: MeasureProfile start
17-03-18 06:25:42.584 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:25:42.584 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:25:42.594 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:25:42.594 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:25:42.594 -07 000000467 INF: MeasureProfile done
17-03-18 06:25:42.594 -07 000000467 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:25:42.594 -07 000000467 INF: Autofocus finished
17-03-18 06:25:42.794 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:25:42.794 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 06:25:42.804 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7314453125, Z-position -0.177794353831329. ----------
17-03-18 06:25:42.804 -07 000000610 INF: Cycle	149	Tile	2	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:25:42.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37353, sync = True, waitForSettling = True)
17-03-18 06:25:42.804 -07 000000610 INF: Z Motor: Moving to -0.170991 mm, started at -0.177794 mm, distance = 6.80 um
17-03-18 06:25:42.804 -07 000000610 INF: FPGA: Xmit ZDACW 37353\n [Z Motor]
17-03-18 06:25:42.804 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:25:42.814 -07 000000610 INF: FPGA: 'ZDACW 37353' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:25:42.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:25:42.814 -07 000000474 INF: FPGA: Recv ZDACR 37353
17-03-18 06:25:42.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:42.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:25:42.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:42.974 -07 000000569 INF: FPGA: Recv ZSGSRD 35912
17-03-18 06:25:42.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:25:42.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:42.984 -07 000000611 INF: FPGA: Recv ZSGSRD 35907
17-03-18 06:25:42.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:42.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:42.994 -07 000000629 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:25:43.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:43.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:43.004 -07 000000382 INF: FPGA: Recv ZSGSRD 35907
17-03-18 06:25:43.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:43.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:43.014 -07 000000591 INF: FPGA: Recv ZSGSRD 35915
17-03-18 06:25:43.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:43.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:43.024 -07 000000479 INF: FPGA: Recv ZSGSRD 35912
17-03-18 06:25:43.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:43.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:43.034 -07 000000447 INF: FPGA: Recv ZSGSRD 35912
17-03-18 06:25:43.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:43.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:43.044 -07 000000438 INF: FPGA: Recv ZSGSRD 35905
17-03-18 06:25:43.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:43.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:43.054 -07 000000569 INF: FPGA: Recv ZSGSRD 35909
17-03-18 06:25:43.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:43.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:43.064 -07 000000461 INF: FPGA: Recv ZSGSRD 35910
17-03-18 06:25:43.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:43.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:25:43.074 -07 000000629 INF: FPGA: Recv ZPIEZORD 31709
17-03-18 06:25:43.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:43.084 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.3 V.
17-03-18 06:25:43.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35910 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35910 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35905 (-170.1 uncal um), Max = 35915 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:25:43.084 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35910, posNoise = 5, negNoise = 5
17-03-18 06:25:43.084 -07 000000610 INF: Z Motor: After move to -0.170991, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:25:43.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:25:43.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:25:43.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:25:43.084 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:25:43.084 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:25:43.084 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:25:43.084 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:25:43.084 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:25:43.084 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:25:43.084 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:25:43.084 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:25:43.084 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:25:43.084 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:25:43.094 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:25:43.094 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:25:43.094 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:25:43.094 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:25:43.104 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:25:43.104 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:25:43.104 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:25:43.104 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:25:43.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37530 150\n [Camera]
17-03-18 06:25:43.304 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:25:43.764 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:25:43.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:25:43.764 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:25:43.764 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:25:43.764 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:25:43.774 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:25:43.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:25:43.774 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:25:43.774 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:25:43.774 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:25:43.964 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37530 844
17-03-18 06:25:44.114 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:25:44.174 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:25:44.174 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:25:44.174 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:44.174 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:25:44.174 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:25:44.174 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:44.174 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:25:44.174 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:25:44.174 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:25:44.184 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:25:44.334 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:25:44.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:25:44.334 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:25:44.334 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:25:44.334 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:25:44.334 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:25:44.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:25:44.334 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:25:44.454 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:25:44.454 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 594366336, 0x0, 418435064) start.
17-03-18 06:25:44.524 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:25:44.524 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:25:44.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37530 150' command took 2 ms to send, 1407 ms to get response, and 1417 ms overall
17-03-18 06:25:44.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:25:44.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7314453125, Z-Position -0.171016810021771. ------
17-03-18 06:25:44.534 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:25:44.534 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17785 mm
17-03-18 06:25:44.534 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:25:44.534 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:25:44.534 -07 000000501 INF: Y Motor: Moving to 61.5726 mm, started at 60.7314 mm, delta = 0.8412 mm
17-03-18 06:25:44.534 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:25:44.534 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38851, sync = True, waitForSettling = False)
17-03-18 06:25:44.534 -07 000000438 INF: Z Motor: Moving to -0.177848 mm, started at -0.171017 mm, distance = -6.83 um
17-03-18 06:25:44.544 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:25:44.544 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:25:44.554 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:44.554 -07 000000629 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:25:44.564 -07 000000438 INF: FPGA: Xmit ZDACW 38851\n [Z Motor]
17-03-18 06:25:44.564 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:25:44.564 -07 000000501 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:44.564 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:25:44.564 -07 000000501 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:25:44.564 -07 000000501 INF: Y Motor: Moving 1345 steps-23
17-03-18 06:25:44.574 -07 000000438 INF: FPGA: 'ZDACW 38851' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 06:25:44.574 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:25:44.584 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:25:44.584 -07 000000579 INF: FPGA: Recv ZDACR 38851
17-03-18 06:25:44.594 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:25:44.594 -07 000000438 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 06:25:44.724 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:25:44.724 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:25:44.724 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:44.734 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:25:44.734 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:25:44.744 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:25:44.744 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:25:44.834 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 594366336, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:25:44.834 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:25:44.834 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:44.834 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:25:44.844 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-18 06:25:44.944 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:25:44.944 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 06:25:44.994 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:45.004 -07 000000629 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:25:45.004 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:25:45.004 -07 000000501 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:45.004 -07 000000501 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:25:45.004 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.841 mm, average velocity = 2.208 mm/sec
17-03-18 06:25:45.954 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:45.954 -07 000000479 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:25:45.964 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:45.964 -07 000000501 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:45.994 -07 000000501 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:25:45.994 -07 000000501 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:25:45.994 -07 000000501 INF: Y Motor: Moved to 61.5625 after 1455 ms (table move)
17-03-18 06:25:45.994 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177848 mm (DAC = 38851)
17-03-18 06:25:45.994 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:45.994 -07 000000479 INF: FPGA: Recv ZSGSRD 36976
17-03-18 06:25:46.004 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:25:46.004 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:46.004 -07 000000569 INF: FPGA: Recv ZSGSRD 36983
17-03-18 06:25:46.014 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:46.014 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:46.014 -07 000000461 INF: FPGA: Recv ZSGSRD 36984
17-03-18 06:25:46.024 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:46.024 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:46.024 -07 000000501 INF: FPGA: Recv ZSGSRD 36969
17-03-18 06:25:46.034 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:46.034 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:46.034 -07 000000591 INF: FPGA: Recv ZSGSRD 36983
17-03-18 06:25:46.044 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:46.044 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:46.044 -07 000000569 INF: FPGA: Recv ZSGSRD 36978
17-03-18 06:25:46.054 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:46.054 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:46.054 -07 000000455 INF: FPGA: Recv ZSGSRD 36974
17-03-18 06:25:46.064 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:46.064 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:46.064 -07 000000447 INF: FPGA: Recv ZSGSRD 36977
17-03-18 06:25:46.074 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:46.074 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:46.074 -07 000000608 INF: FPGA: Recv ZSGSRD 36973
17-03-18 06:25:46.084 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:46.084 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:46.084 -07 000000629 INF: FPGA: Recv ZSGSRD 36976
17-03-18 06:25:46.094 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:46.094 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:25:46.094 -07 000000455 INF: FPGA: Recv ZPIEZORD 33142
17-03-18 06:25:46.104 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:46.104 -07 000000611 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.5 V.
17-03-18 06:25:46.104 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36977 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36976 (-177.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36969 (-176.9 uncal um), Max = 36984 (-177.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:25:46.104 -07 000000611 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36977, posNoise = 7, negNoise = 8
17-03-18 06:25:46.104 -07 000000611 INF: Z Motor: After move to -0.177848, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:25:46.104 -07 000000611 INF: Z Motor: Settle wait time = 1459 ms, measure time = 103 ms (allowed 150 ms), total time = 1562 ms
17-03-18 06:25:46.104 -07 000000611 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:25:46.154 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 06:25:46.154 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:25:46.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:25:46.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:25:46.154 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:25:46.154 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:25:46.154 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:25:46.154 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:25:46.154 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:25:46.154 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:25:46.164 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:25:46.164 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:25:46.164 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:25:46.164 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:25:46.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:25:46.214 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:25:46.514 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:25:46.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:25:46.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:25:46.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 06:25:46.554 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:25:46.554 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:25:46.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 06:25:46.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:25:46.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:46.634 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:25:46.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:25:46.654 -07 000000591 INF: Autofocus start
17-03-18 06:25:46.654 -07 000000591 INF: MeasureProfile start
17-03-18 06:25:46.654 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:25:46.654 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:25:46.664 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:25:46.664 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:25:46.664 -07 000000591 INF: MeasureProfile done
17-03-18 06:25:46.664 -07 000000591 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:25:46.664 -07 000000591 INF: Autofocus finished
17-03-18 06:25:46.694 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.005817,
17-03-18 06:25:46.854 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:25:46.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:25:46.864 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:25:46.864 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:25:46.864 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.17787144437703. ----------
17-03-18 06:25:46.864 -07 000000610 INF: Cycle	149	Tile	3	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:25:46.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37348, sync = True, waitForSettling = True)
17-03-18 06:25:46.874 -07 000000610 INF: Z Motor: Moving to -0.170968 mm, started at -0.177871 mm, distance = 6.90 um
17-03-18 06:25:46.874 -07 000000610 INF: FPGA: Xmit ZDACW 37348\n [Z Motor]
17-03-18 06:25:46.874 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:25:46.884 -07 000000610 INF: FPGA: 'ZDACW 37348' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:46.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:25:46.884 -07 000000611 INF: FPGA: Recv ZDACR 37348
17-03-18 06:25:46.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:46.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:25:47.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:47.044 -07 000000629 INF: FPGA: Recv ZSGSRD 35899
17-03-18 06:25:47.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:25:47.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:47.064 -07 000000462 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:25:47.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:25:47.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:47.074 -07 000000579 INF: FPGA: Recv ZSGSRD 35895
17-03-18 06:25:47.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:47.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:47.084 -07 000000447 INF: FPGA: Recv ZSGSRD 35905
17-03-18 06:25:47.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:47.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:47.094 -07 000000382 INF: FPGA: Recv ZSGSRD 35905
17-03-18 06:25:47.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:47.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:47.104 -07 000000629 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:25:47.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:47.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:47.114 -07 000000438 INF: FPGA: Recv ZSGSRD 35902
17-03-18 06:25:47.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:47.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:47.124 -07 000000467 INF: FPGA: Recv ZSGSRD 35901
17-03-18 06:25:47.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:47.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:47.134 -07 000000455 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:25:47.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:47.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:47.144 -07 000000461 INF: FPGA: Recv ZSGSRD 35909
17-03-18 06:25:47.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:47.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:25:47.154 -07 000000501 INF: FPGA: Recv ZPIEZORD 31745
17-03-18 06:25:47.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:47.164 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.2 V.
17-03-18 06:25:47.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35903 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35905 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35895 (-170.0 uncal um), Max = 35909 (-170.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:25:47.164 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35903, posNoise = 6, negNoise = 8
17-03-18 06:25:47.164 -07 000000610 INF: Z Motor: After move to -0.170968, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:25:47.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 06:25:47.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:25:47.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:25:47.164 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:25:47.164 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:25:47.164 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:25:47.164 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:25:47.164 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:25:47.164 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:25:47.164 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:25:47.164 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:25:47.164 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:25:47.164 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:25:47.174 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:25:47.174 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:25:47.174 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:25:47.174 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:25:47.184 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:25:47.184 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:25:47.184 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:25:47.184 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:25:47.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37525 150\n [Camera]
17-03-18 06:25:47.384 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:25:47.844 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:25:47.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:25:47.844 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:25:47.844 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:25:47.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:25:47.844 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:25:47.844 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:25:47.844 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) start.
17-03-18 06:25:47.854 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:25:47.854 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:25:48.034 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37525 844
17-03-18 06:25:48.184 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:25:48.234 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:25:48.234 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:25:48.234 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:48.234 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:25:48.234 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:25:48.234 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:25:48.234 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:25:48.234 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:48.244 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:25:48.244 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:25:48.404 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:25:48.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:25:48.404 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:25:48.404 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:25:48.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:25:48.404 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:25:48.524 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:25:48.524 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:25:48.534 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:25:48.534 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:25:48.594 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-18 06:25:48.594 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:25:48.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37525 150' command took 2 ms to send, 1407 ms to get response, and 1414 ms overall
17-03-18 06:25:48.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:25:48.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.170971840536779. ------
17-03-18 06:25:48.604 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:25:48.604 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17721 mm
17-03-18 06:25:48.604 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:25:48.604 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38711, sync = True, waitForSettling = False)
17-03-18 06:25:48.604 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:25:48.604 -07 000000608 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 06:25:48.604 -07 000000438 INF: Z Motor: Moving to -0.177208 mm, started at -0.170972 mm, distance = -6.24 um
17-03-18 06:25:48.604 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:25:48.614 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:25:48.614 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:48.614 -07 000000591 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:25:48.624 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:25:48.624 -07 000000608 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:48.624 -07 000000608 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:25:48.624 -07 000000608 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:25:48.624 -07 000000438 INF: FPGA: Xmit ZDACW 38711\n [Z Motor]
17-03-18 06:25:48.624 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:25:48.634 -07 000000438 INF: FPGA: 'ZDACW 38711' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:25:48.634 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:25:48.644 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:25:48.654 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:25:48.654 -07 000000474 INF: FPGA: Recv ZDACR 38711
17-03-18 06:25:48.664 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:25:48.664 -07 000000438 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:25:48.834 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:25:48.834 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:25:48.914 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:25:48.914 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:25:48.914 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:48.914 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:25:48.924 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 06:25:48.924 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:25:48.924 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:48.924 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:25:48.924 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 06:25:48.924 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 06:25:49.014 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:25:49.014 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:25:49.064 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:49.074 -07 000000591 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:25:49.074 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:25:49.074 -07 000000608 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:49.074 -07 000000608 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:25:49.074 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 06:25:50.024 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:50.024 -07 000000569 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:25:50.034 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:50.034 -07 000000608 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:50.064 -07 000000608 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:25:50.064 -07 000000608 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:25:50.064 -07 000000608 INF: Y Motor: Moved to 62.3945 after 1455 ms (table move)
17-03-18 06:25:50.064 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177208 mm (DAC = 38711)
17-03-18 06:25:50.064 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:50.064 -07 000000569 INF: FPGA: Recv ZSGSRD 36881
17-03-18 06:25:50.074 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:25:50.074 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:50.074 -07 000000579 INF: FPGA: Recv ZSGSRD 36881
17-03-18 06:25:50.084 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:50.084 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:50.084 -07 000000591 INF: FPGA: Recv ZSGSRD 36881
17-03-18 06:25:50.094 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:50.094 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:50.094 -07 000000462 INF: FPGA: Recv ZSGSRD 36871
17-03-18 06:25:50.104 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:50.104 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:50.104 -07 000000569 INF: FPGA: Recv ZSGSRD 36869
17-03-18 06:25:50.114 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:50.114 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:50.114 -07 000000447 INF: FPGA: Recv ZSGSRD 36874
17-03-18 06:25:50.124 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:50.124 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:50.124 -07 000000629 INF: FPGA: Recv ZSGSRD 36879
17-03-18 06:25:50.134 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:50.134 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:50.134 -07 000000462 INF: FPGA: Recv ZSGSRD 36876
17-03-18 06:25:50.144 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:50.144 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:50.144 -07 000000611 INF: FPGA: Recv ZSGSRD 36872
17-03-18 06:25:50.154 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:50.154 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:50.154 -07 000000608 INF: FPGA: Recv ZSGSRD 36880
17-03-18 06:25:50.164 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:50.164 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:25:50.164 -07 000000629 INF: FPGA: Recv ZPIEZORD 33045
17-03-18 06:25:50.174 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:50.174 -07 000000479 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.907 V. Piezo Error = -8.5 V.
17-03-18 06:25:50.174 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36876 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36878 (-176.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36869 (-176.3 uncal um), Max = 36881 (-176.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:25:50.174 -07 000000479 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36876, posNoise = 5, negNoise = 7
17-03-18 06:25:50.174 -07 000000479 INF: Z Motor: After move to -0.177208, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:25:50.174 -07 000000479 INF: Z Motor: Settle wait time = 1459 ms, measure time = 105 ms (allowed 150 ms), total time = 1564 ms
17-03-18 06:25:50.174 -07 000000479 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:25:50.224 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 06:25:50.224 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:25:50.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:25:50.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:25:50.224 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:25:50.224 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:25:50.224 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:25:50.224 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:25:50.224 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:25:50.224 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:25:50.234 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:25:50.234 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:25:50.244 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:25:50.244 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:25:50.244 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:25:50.294 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:25:50.594 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:25:50.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:25:50.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:25:50.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611241400, 0x0, 559484976) start.
17-03-18 06:25:50.634 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:25:50.634 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 06:25:50.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:25:50.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611241400, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:25:50.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:50.724 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:25:50.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 06:25:50.734 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:25:50.734 -07 000000438 INF: Autofocus start
17-03-18 06:25:50.734 -07 000000438 INF: MeasureProfile start
17-03-18 06:25:50.744 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:25:50.744 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:25:50.744 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:25:50.754 -07 000000438 INF: MeasureProfile done
17-03-18 06:25:50.754 -07 000000438 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:25:50.754 -07 000000438 INF: Autofocus finished
17-03-18 06:25:50.944 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:25:50.944 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:25:50.944 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.177222598950712. ----------
17-03-18 06:25:50.954 -07 000000610 INF: Cycle	149	Tile	4	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:25:50.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37208, sync = True, waitForSettling = True)
17-03-18 06:25:50.954 -07 000000610 INF: Z Motor: Moving to -0.170327 mm, started at -0.177223 mm, distance = 6.90 um
17-03-18 06:25:50.954 -07 000000610 INF: FPGA: Xmit ZDACW 37208\n [Z Motor]
17-03-18 06:25:50.954 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:25:50.964 -07 000000610 INF: FPGA: 'ZDACW 37208' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:25:50.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:25:50.964 -07 000000462 INF: FPGA: Recv ZDACR 37208
17-03-18 06:25:50.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:50.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:25:51.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:51.124 -07 000000438 INF: FPGA: Recv ZSGSRD 35804
17-03-18 06:25:51.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:25:51.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:51.134 -07 000000474 INF: FPGA: Recv ZSGSRD 35808
17-03-18 06:25:51.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:51.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:51.144 -07 000000569 INF: FPGA: Recv ZSGSRD 35812
17-03-18 06:25:51.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:51.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:51.154 -07 000000579 INF: FPGA: Recv ZSGSRD 35803
17-03-18 06:25:51.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:51.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:51.164 -07 000000591 INF: FPGA: Recv ZSGSRD 35800
17-03-18 06:25:51.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:51.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:51.174 -07 000000447 INF: FPGA: Recv ZSGSRD 35807
17-03-18 06:25:51.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:51.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:51.184 -07 000000608 INF: FPGA: Recv ZSGSRD 35800
17-03-18 06:25:51.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:51.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:51.194 -07 000000461 INF: FPGA: Recv ZSGSRD 35806
17-03-18 06:25:51.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:51.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:51.204 -07 000000467 INF: FPGA: Recv ZSGSRD 35803
17-03-18 06:25:51.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:51.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:51.214 -07 000000474 INF: FPGA: Recv ZSGSRD 35805
17-03-18 06:25:51.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:51.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:25:51.224 -07 000000455 INF: FPGA: Recv ZPIEZORD 31645
17-03-18 06:25:51.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:51.234 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.2 V.
17-03-18 06:25:51.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35805 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35804 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35800 (-169.4 uncal um), Max = 35812 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:25:51.234 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35805, posNoise = 7, negNoise = 5
17-03-18 06:25:51.234 -07 000000610 INF: Z Motor: After move to -0.170327, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:25:51.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:25:51.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:25:51.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:25:51.234 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:25:51.234 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:25:51.234 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:25:51.234 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:25:51.234 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:25:51.234 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:25:51.234 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:25:51.234 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:25:51.234 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:25:51.234 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:25:51.244 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:25:51.244 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:25:51.244 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:25:51.244 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:25:51.244 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:25:51.244 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:25:51.254 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:25:51.254 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:25:51.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37385 150\n [Camera]
17-03-18 06:25:51.454 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:25:51.854 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:25:51.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:25:51.914 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:25:51.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:25:51.914 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:25:51.914 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:25:51.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:25:51.914 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:25:51.924 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:25:51.924 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:25:51.924 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:25:51.924 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:25:52.064 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.989471,
17-03-18 06:25:52.104 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37385 844
17-03-18 06:25:52.254 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:25:52.294 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 06:25:52.294 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 06:25:52.294 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:52.294 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 06:25:52.294 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 06:25:52.294 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:52.304 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:25:52.304 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:25:52.304 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:25:52.304 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:25:52.474 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:25:52.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:25:52.474 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:25:52.484 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:25:52.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:25:52.484 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:25:52.484 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:25:52.484 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:25:52.484 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:25:52.484 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:25:52.664 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-18 06:25:52.664 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:25:52.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37385 150' command took 2 ms to send, 1409 ms to get response, and 1415 ms overall
17-03-18 06:25:52.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:25:52.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.170342267746886. ------
17-03-18 06:25:52.674 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17678 mm
17-03-18 06:25:52.674 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:25:52.674 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:25:52.674 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:25:52.674 -07 000000608 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 06:25:52.674 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38618, sync = True, waitForSettling = False)
17-03-18 06:25:52.674 -07 000000579 INF: Z Motor: Moving to -0.176782 mm, started at -0.170342 mm, distance = -6.44 um
17-03-18 06:25:52.684 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:52.684 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:25:52.684 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:25:52.684 -07 000000438 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:25:52.694 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:25:52.694 -07 000000608 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:52.694 -07 000000608 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:25:52.694 -07 000000608 INF: Y Motor: Moving 1341 steps-18
17-03-18 06:25:52.694 -07 000000579 INF: FPGA: Xmit ZDACW 38618\n [Z Motor]
17-03-18 06:25:52.694 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:25:52.704 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:25:52.704 -07 000000579 INF: FPGA: 'ZDACW 38618' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:25:52.714 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:25:52.724 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:25:52.724 -07 000000591 INF: FPGA: Recv ZDACR 38618
17-03-18 06:25:52.734 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:25:52.734 -07 000000579 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:25:52.874 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:25:52.874 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:25:52.874 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:52.874 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:25:52.874 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:25:52.874 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:52.884 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:25:52.884 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 06:25:52.884 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:25:52.884 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:25:52.904 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:25:52.904 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:25:53.084 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 06:25:53.084 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:25:53.144 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:53.144 -07 000000569 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:25:53.154 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:25:53.154 -07 000000608 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:53.154 -07 000000608 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:25:53.154 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 06:25:54.104 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:54.104 -07 000000629 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:25:54.114 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:25:54.114 -07 000000608 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:54.144 -07 000000608 INF: Y Motor: After move to 63.232609, error = -0.010441, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:25:54.144 -07 000000608 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:25:54.144 -07 000000608 INF: Y Motor: Moved to 63.2222 after 1463 ms (table move)
17-03-18 06:25:54.144 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176782 mm (DAC = 38618)
17-03-18 06:25:54.144 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:54.144 -07 000000474 INF: FPGA: Recv ZSGSRD 36805
17-03-18 06:25:54.154 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:25:54.154 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:54.154 -07 000000501 INF: FPGA: Recv ZSGSRD 36815
17-03-18 06:25:54.164 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:54.164 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:54.164 -07 000000579 INF: FPGA: Recv ZSGSRD 36808
17-03-18 06:25:54.174 -07 000000461 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:54.174 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:54.174 -07 000000501 INF: FPGA: Recv ZSGSRD 36813
17-03-18 06:25:54.184 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:54.184 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:54.184 -07 000000447 INF: FPGA: Recv ZSGSRD 36806
17-03-18 06:25:54.194 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:54.194 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:54.194 -07 000000629 INF: FPGA: Recv ZSGSRD 36803
17-03-18 06:25:54.204 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:54.204 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:54.204 -07 000000569 INF: FPGA: Recv ZSGSRD 36814
17-03-18 06:25:54.214 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:54.214 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:54.214 -07 000000611 INF: FPGA: Recv ZSGSRD 36805
17-03-18 06:25:54.224 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:54.224 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:54.224 -07 000000608 INF: FPGA: Recv ZSGSRD 36802
17-03-18 06:25:54.234 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:54.234 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:54.234 -07 000000569 INF: FPGA: Recv ZSGSRD 36810
17-03-18 06:25:54.244 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:54.244 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:25:54.244 -07 000000382 INF: FPGA: Recv ZPIEZORD 32983
17-03-18 06:25:54.254 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:54.254 -07 000000461 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.893 V. Piezo Error = -8.5 V.
17-03-18 06:25:54.254 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36808 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36807 (-175.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36802 (-175.9 uncal um), Max = 36815 (-175.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:25:54.254 -07 000000461 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36808, posNoise = 7, negNoise = 6
17-03-18 06:25:54.254 -07 000000461 INF: Z Motor: After move to -0.176782, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:25:54.254 -07 000000461 INF: Z Motor: Settle wait time = 1466 ms, measure time = 105 ms (allowed 150 ms), total time = 1571 ms
17-03-18 06:25:54.254 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:25:54.304 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 06:25:54.304 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:25:54.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:25:54.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:25:54.304 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:25:54.304 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:25:54.304 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:25:54.304 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:25:54.304 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:25:54.304 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:25:54.314 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:25:54.314 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:25:54.314 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:25:54.314 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:25:54.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:25:54.364 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:25:54.664 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:25:54.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:25:54.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:25:54.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 06:25:54.704 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:25:54.704 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 06:25:54.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:25:54.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:25:54.784 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:54.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:25:54.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:25:54.804 -07 000000501 INF: Autofocus start
17-03-18 06:25:54.804 -07 000000501 INF: MeasureProfile start
17-03-18 06:25:54.804 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:25:54.804 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:25:54.814 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:25:54.814 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:25:54.814 -07 000000501 INF: MeasureProfile done
17-03-18 06:25:54.814 -07 000000501 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 06:25:54.814 -07 000000501 INF: Autofocus finished
17-03-18 06:25:55.014 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:25:55.014 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:25:55.014 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22216796875, Z-position -0.176785752525072. ----------
17-03-18 06:25:55.014 -07 000000610 INF: Cycle	149	Tile	5	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:25:55.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37098, sync = True, waitForSettling = True)
17-03-18 06:25:55.024 -07 000000610 INF: Z Motor: Moving to -0.169824 mm, started at -0.176786 mm, distance = 6.96 um
17-03-18 06:25:55.024 -07 000000610 INF: FPGA: Xmit ZDACW 37098\n [Z Motor]
17-03-18 06:25:55.024 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:25:55.034 -07 000000610 INF: FPGA: 'ZDACW 37098' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:25:55.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:25:55.034 -07 000000501 INF: FPGA: Recv ZDACR 37098
17-03-18 06:25:55.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:55.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:25:55.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:55.194 -07 000000591 INF: FPGA: Recv ZSGSRD 35724
17-03-18 06:25:55.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:55.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:55.204 -07 000000455 INF: FPGA: Recv ZSGSRD 35725
17-03-18 06:25:55.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:55.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:55.214 -07 000000461 INF: FPGA: Recv ZSGSRD 35730
17-03-18 06:25:55.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:55.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:55.224 -07 000000611 INF: FPGA: Recv ZSGSRD 35728
17-03-18 06:25:55.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:55.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:55.234 -07 000000579 INF: FPGA: Recv ZSGSRD 35727
17-03-18 06:25:55.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:55.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:55.244 -07 000000569 INF: FPGA: Recv ZSGSRD 35730
17-03-18 06:25:55.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:55.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:55.254 -07 000000382 INF: FPGA: Recv ZSGSRD 35726
17-03-18 06:25:55.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:55.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:55.264 -07 000000608 INF: FPGA: Recv ZSGSRD 35721
17-03-18 06:25:55.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:55.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:55.274 -07 000000591 INF: FPGA: Recv ZSGSRD 35723
17-03-18 06:25:55.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:55.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:55.284 -07 000000462 INF: FPGA: Recv ZSGSRD 35725
17-03-18 06:25:55.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:55.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:25:55.294 -07 000000461 INF: FPGA: Recv ZPIEZORD 31538
17-03-18 06:25:55.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:55.304 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.661 V. Piezo Error = -9.2 V.
17-03-18 06:25:55.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35726 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35726 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35721 (-168.9 uncal um), Max = 35730 (-169.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:25:55.304 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35726, posNoise = 4, negNoise = 5
17-03-18 06:25:55.304 -07 000000610 INF: Z Motor: After move to -0.169824, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:25:55.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:25:55.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:25:55.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:25:55.304 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:25:55.304 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:25:55.304 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:25:55.304 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:25:55.304 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:25:55.304 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:25:55.304 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:25:55.304 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:25:55.304 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 06:25:55.304 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:25:55.314 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:25:55.314 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:25:55.314 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:25:55.314 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:25:55.324 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:25:55.324 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:25:55.324 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:25:55.324 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:25:55.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37275 150\n [Camera]
17-03-18 06:25:55.524 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:25:55.984 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:25:55.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:25:55.984 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:25:55.984 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:25:55.984 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:25:55.984 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:25:55.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:25:55.984 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:25:55.984 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:25:55.984 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:25:56.174 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37275 844
17-03-18 06:25:56.324 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:25:56.374 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:25:56.374 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:25:56.374 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:56.374 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:25:56.374 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:25:56.374 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:25:56.374 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:25:56.374 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:56.384 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:25:56.384 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:25:56.544 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:25:56.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:25:56.544 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:25:56.664 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:25:56.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:25:56.664 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:25:56.664 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:25:56.664 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:25:56.674 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:25:56.674 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 06:25:56.734 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-18 06:25:56.734 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:25:56.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37275 150' command took 2 ms to send, 1409 ms to get response, and 1416 ms overall
17-03-18 06:25:56.744 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:25:56.744 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22216796875, Z-Position -0.169834754987687. ------
17-03-18 06:25:56.744 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:25:56.744 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17608 mm
17-03-18 06:25:56.744 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:25:56.744 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:25:56.744 -07 000000462 INF: Y Motor: Moving to 64.0626 mm, started at 63.2222 mm, delta = 0.8404 mm
17-03-18 06:25:56.744 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38465, sync = True, waitForSettling = False)
17-03-18 06:25:56.744 -07 000000382 INF: Z Motor: Moving to -0.176081 mm, started at -0.169835 mm, distance = -6.25 um
17-03-18 06:25:56.744 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:25:56.754 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:25:56.754 -07 000000382 INF: FPGA: Xmit ZDACW 38465\n [Z Motor]
17-03-18 06:25:56.754 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:25:56.764 -07 000000382 INF: FPGA: 'ZDACW 38465' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:25:56.764 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:56.764 -07 000000591 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:25:56.774 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:25:56.774 -07 000000462 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:56.774 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:25:56.774 -07 000000462 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:25:56.774 -07 000000462 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:25:56.784 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:25:56.784 -07 000000447 INF: FPGA: Recv ZDACR 38465
17-03-18 06:25:56.794 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:25:56.794 -07 000000382 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 06:25:56.794 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:25:56.854 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:25:56.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:25:56.974 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:25:56.974 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 06:25:57.064 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:25:57.064 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:25:57.064 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:57.064 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:25:57.064 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:25:57.064 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:57.074 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:25:57.074 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:25:57.074 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 06:25:57.084 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:25:57.164 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:25:57.164 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:25:57.224 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:57.224 -07 000000629 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:25:57.234 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:57.234 -07 000000462 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:57.234 -07 000000462 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 06:25:57.234 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.144 mm/sec
17-03-18 06:25:57.434 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.985358,
17-03-18 06:25:58.184 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:25:58.184 -07 000000591 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:25:58.194 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:25:58.194 -07 000000462 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:25:58.224 -07 000000462 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:25:58.224 -07 000000462 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:25:58.224 -07 000000462 INF: Y Motor: Moved to 64.0557 after 1474 ms (table move)
17-03-18 06:25:58.224 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176081 mm (DAC = 38465)
17-03-18 06:25:58.224 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:58.234 -07 000000455 INF: FPGA: Recv ZSGSRD 36697
17-03-18 06:25:58.234 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 06:25:58.234 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:58.234 -07 000000474 INF: FPGA: Recv ZSGSRD 36703
17-03-18 06:25:58.244 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:25:58.244 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:58.244 -07 000000438 INF: FPGA: Recv ZSGSRD 36695
17-03-18 06:25:58.254 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:58.254 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:58.254 -07 000000462 INF: FPGA: Recv ZSGSRD 36699
17-03-18 06:25:58.264 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:58.264 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:58.264 -07 000000479 INF: FPGA: Recv ZSGSRD 36698
17-03-18 06:25:58.274 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:58.274 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:58.274 -07 000000474 INF: FPGA: Recv ZSGSRD 36698
17-03-18 06:25:58.284 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:58.284 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:58.284 -07 000000438 INF: FPGA: Recv ZSGSRD 36705
17-03-18 06:25:58.294 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:58.294 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:58.294 -07 000000382 INF: FPGA: Recv ZSGSRD 36705
17-03-18 06:25:58.304 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:58.304 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:58.304 -07 000000462 INF: FPGA: Recv ZSGSRD 36702
17-03-18 06:25:58.314 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:58.314 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:58.314 -07 000000474 INF: FPGA: Recv ZSGSRD 36700
17-03-18 06:25:58.324 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:58.324 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:25:58.324 -07 000000447 INF: FPGA: Recv ZPIEZORD 32832
17-03-18 06:25:58.334 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:58.334 -07 000000461 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.869 V. Piezo Error = -8.6 V.
17-03-18 06:25:58.334 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36700 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36700 (-175.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36695 (-175.2 uncal um), Max = 36705 (-175.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:25:58.334 -07 000000461 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36700, posNoise = 5, negNoise = 5
17-03-18 06:25:58.334 -07 000000461 INF: Z Motor: After move to -0.176081, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:25:58.334 -07 000000461 INF: Z Motor: Settle wait time = 1477 ms, measure time = 105 ms (allowed 150 ms), total time = 1582 ms
17-03-18 06:25:58.334 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:25:58.384 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 06:25:58.384 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:25:58.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:25:58.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:25:58.384 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:25:58.384 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:25:58.384 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:25:58.384 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:25:58.384 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:25:58.384 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:25:58.394 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:25:58.394 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:25:58.404 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:25:58.404 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:25:58.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:25:58.444 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:25:58.744 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:25:58.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:25:58.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:25:58.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 06:25:58.784 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:25:58.784 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:25:58.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:25:58.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:25:58.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:25:58.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:25:58.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:25:58.884 -07 000000591 INF: Autofocus start
17-03-18 06:25:58.884 -07 000000591 INF: MeasureProfile start
17-03-18 06:25:58.884 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:25:58.884 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:25:58.894 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:25:58.894 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:25:58.894 -07 000000591 INF: MeasureProfile done
17-03-18 06:25:58.894 -07 000000591 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:25:58.894 -07 000000591 INF: Autofocus finished
17-03-18 06:25:59.094 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:25:59.094 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:25:59.104 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176091937613762. ----------
17-03-18 06:25:59.104 -07 000000610 INF: Cycle	149	Tile	6	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:25:59.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36997, sync = True, waitForSettling = True)
17-03-18 06:25:59.104 -07 000000610 INF: Z Motor: Moving to -0.169361 mm, started at -0.176092 mm, distance = 6.73 um
17-03-18 06:25:59.104 -07 000000610 INF: FPGA: Xmit ZDACW 36997\n [Z Motor]
17-03-18 06:25:59.104 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:25:59.114 -07 000000610 INF: FPGA: 'ZDACW 36997' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:25:59.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:25:59.114 -07 000000467 INF: FPGA: Recv ZDACR 36997
17-03-18 06:25:59.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:59.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:25:59.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:59.274 -07 000000467 INF: FPGA: Recv ZSGSRD 35648
17-03-18 06:25:59.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:59.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:59.284 -07 000000611 INF: FPGA: Recv ZSGSRD 35658
17-03-18 06:25:59.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:59.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:59.294 -07 000000438 INF: FPGA: Recv ZSGSRD 35653
17-03-18 06:25:59.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:59.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:59.304 -07 000000608 INF: FPGA: Recv ZSGSRD 35650
17-03-18 06:25:59.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:59.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:59.314 -07 000000382 INF: FPGA: Recv ZSGSRD 35660
17-03-18 06:25:59.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:59.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:59.324 -07 000000461 INF: FPGA: Recv ZSGSRD 35652
17-03-18 06:25:59.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:59.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:59.334 -07 000000629 INF: FPGA: Recv ZSGSRD 35660
17-03-18 06:25:59.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:59.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:59.344 -07 000000591 INF: FPGA: Recv ZSGSRD 35651
17-03-18 06:25:59.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:59.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:59.354 -07 000000462 INF: FPGA: Recv ZSGSRD 35655
17-03-18 06:25:59.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:59.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:25:59.364 -07 000000608 INF: FPGA: Recv ZSGSRD 35659
17-03-18 06:25:59.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:59.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:25:59.374 -07 000000579 INF: FPGA: Recv ZPIEZORD 31434
17-03-18 06:25:59.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:25:59.384 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.645 V. Piezo Error = -9.3 V.
17-03-18 06:25:59.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35655 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35654 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35648 (-168.5 uncal um), Max = 35660 (-168.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:25:59.384 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35655, posNoise = 5, negNoise = 7
17-03-18 06:25:59.384 -07 000000610 INF: Z Motor: After move to -0.169361, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:25:59.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:25:59.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:25:59.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:25:59.384 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:25:59.384 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:25:59.384 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:25:59.384 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:25:59.384 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:25:59.384 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:25:59.384 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:25:59.384 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:25:59.384 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:25:59.384 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:25:59.384 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:25:59.394 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:25:59.394 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:25:59.394 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:25:59.394 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:25:59.394 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:25:59.394 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:25:59.394 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:25:59.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37174 150\n [Camera]
17-03-18 06:25:59.604 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:26:00.064 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:26:00.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:26:00.064 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:00.064 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:26:00.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:26:00.064 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:00.074 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:00.074 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:26:00.074 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:00.074 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:26:00.254 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37174 844
17-03-18 06:26:00.404 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:26:00.444 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:26:00.444 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 06:26:00.444 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:00.444 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:26:00.444 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:26:00.444 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:00.454 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:00.454 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:26:00.454 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:00.454 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:26:00.624 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:00.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:00.624 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:00.744 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:00.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:00.744 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:00.744 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:00.744 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:26:00.754 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:00.754 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 06:26:00.814 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:26:00.814 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:00.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37174 150' command took 2 ms to send, 1407 ms to get response, and 1415 ms overall
17-03-18 06:26:00.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:26:00.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.169378635925622. ------
17-03-18 06:26:00.824 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:00.824 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17585 mm
17-03-18 06:26:00.824 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:00.824 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:26:00.824 -07 000000382 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 06:26:00.824 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:00.824 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 38415, sync = True, waitForSettling = False)
17-03-18 06:26:00.824 -07 000000611 INF: Z Motor: Moving to -0.175853 mm, started at -0.169379 mm, distance = -6.47 um
17-03-18 06:26:00.834 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:26:00.834 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:00.834 -07 000000591 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:26:00.844 -07 000000611 INF: FPGA: Xmit ZDACW 38415\n [Z Motor]
17-03-18 06:26:00.844 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:26:00.844 -07 000000382 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:00.844 -07 000000382 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:26:00.844 -07 000000382 INF: Y Motor: Moving 1339 steps-14
17-03-18 06:26:00.844 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:26:00.854 -07 000000611 INF: FPGA: 'ZDACW 38415' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:26:00.854 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:00.864 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:26:00.874 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:00.874 -07 000000629 INF: FPGA: Recv ZDACR 38415
17-03-18 06:26:00.884 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:26:00.884 -07 000000611 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:26:01.054 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:01.054 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:26:01.134 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:26:01.134 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:26:01.134 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:01.144 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:01.144 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:26:01.144 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:26:01.144 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:01.144 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:01.144 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 06:26:01.144 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:26:01.234 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 06:26:01.234 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:26:01.294 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:01.294 -07 000000474 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:26:01.304 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:26:01.304 -07 000000382 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:01.304 -07 000000382 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:26:01.304 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-18 06:26:01.854 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:26:01.854 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:26:02.254 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:02.254 -07 000000501 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:26:02.264 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:02.264 -07 000000382 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:02.294 -07 000000382 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:26:02.294 -07 000000382 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:26:02.294 -07 000000382 INF: Y Motor: Moved to 64.8774 after 1467 ms (table move)
17-03-18 06:26:02.294 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175853 mm (DAC = 38415)
17-03-18 06:26:02.294 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:02.304 -07 000000611 INF: FPGA: Recv ZSGSRD 36663
17-03-18 06:26:02.304 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:26:02.304 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:02.304 -07 000000629 INF: FPGA: Recv ZSGSRD 36669
17-03-18 06:26:02.314 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:02.314 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:02.314 -07 000000579 INF: FPGA: Recv ZSGSRD 36666
17-03-18 06:26:02.324 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:02.324 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:02.324 -07 000000591 INF: FPGA: Recv ZSGSRD 36664
17-03-18 06:26:02.334 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:02.334 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:02.334 -07 000000611 INF: FPGA: Recv ZSGSRD 36660
17-03-18 06:26:02.344 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:02.344 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:02.344 -07 000000608 INF: FPGA: Recv ZSGSRD 36655
17-03-18 06:26:02.354 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:02.354 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:02.354 -07 000000461 INF: FPGA: Recv ZSGSRD 36662
17-03-18 06:26:02.364 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:02.364 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:02.364 -07 000000591 INF: FPGA: Recv ZSGSRD 36661
17-03-18 06:26:02.374 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:02.374 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:02.374 -07 000000569 INF: FPGA: Recv ZSGSRD 36669
17-03-18 06:26:02.384 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:02.384 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:02.384 -07 000000382 INF: FPGA: Recv ZSGSRD 36669
17-03-18 06:26:02.394 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:02.394 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:02.394 -07 000000462 INF: FPGA: Recv ZPIEZORD 32837
17-03-18 06:26:02.404 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:02.404 -07 000000438 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.862 V. Piezo Error = -8.5 V.
17-03-18 06:26:02.404 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36664 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36664 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36655 (-174.9 uncal um), Max = 36669 (-175.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:26:02.404 -07 000000438 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36664, posNoise = 5, negNoise = 9
17-03-18 06:26:02.404 -07 000000438 INF: Z Motor: After move to -0.175853, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:02.404 -07 000000438 INF: Z Motor: Settle wait time = 1469 ms, measure time = 104 ms (allowed 150 ms), total time = 1573 ms
17-03-18 06:26:02.404 -07 000000438 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:26:02.454 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:26:02.454 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:26:02.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:02.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:02.454 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:02.454 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:02.454 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:26:02.454 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:02.464 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:26:02.464 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:26:02.464 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:26:02.464 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:26:02.464 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:26:02.464 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:26:02.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:26:02.514 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:26:02.814 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.970374,
17-03-18 06:26:02.814 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:26:02.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:26:02.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:26:02.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 06:26:02.854 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:26:02.854 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:26:02.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:26:02.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 06:26:02.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:02.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:26:02.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:26:02.954 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:02.954 -07 000000467 INF: Autofocus start
17-03-18 06:26:02.954 -07 000000467 INF: MeasureProfile start
17-03-18 06:26:02.954 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:02.964 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:26:02.964 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:26:02.974 -07 000000467 INF: MeasureProfile done
17-03-18 06:26:02.974 -07 000000467 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:26:02.974 -07 000000467 INF: Autofocus finished
17-03-18 06:26:03.164 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:26:03.164 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:26:03.164 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.175860665976659. ----------
17-03-18 06:26:03.164 -07 000000610 INF: Cycle	149	Tile	7	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:26:03.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36912, sync = True, waitForSettling = True)
17-03-18 06:26:03.174 -07 000000610 INF: Z Motor: Moving to -0.168972 mm, started at -0.175861 mm, distance = 6.89 um
17-03-18 06:26:03.174 -07 000000610 INF: FPGA: Xmit ZDACW 36912\n [Z Motor]
17-03-18 06:26:03.174 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:26:03.184 -07 000000610 INF: FPGA: 'ZDACW 36912' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:03.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:03.184 -07 000000629 INF: FPGA: Recv ZDACR 36912
17-03-18 06:26:03.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:03.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:26:03.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:03.344 -07 000000611 INF: FPGA: Recv ZSGSRD 35595
17-03-18 06:26:03.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:03.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:03.354 -07 000000447 INF: FPGA: Recv ZSGSRD 35593
17-03-18 06:26:03.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:03.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:03.364 -07 000000467 INF: FPGA: Recv ZSGSRD 35593
17-03-18 06:26:03.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:03.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:03.374 -07 000000462 INF: FPGA: Recv ZSGSRD 35596
17-03-18 06:26:03.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:03.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:03.384 -07 000000455 INF: FPGA: Recv ZSGSRD 35594
17-03-18 06:26:03.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:03.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:03.394 -07 000000438 INF: FPGA: Recv ZSGSRD 35590
17-03-18 06:26:03.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:03.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:03.404 -07 000000382 INF: FPGA: Recv ZSGSRD 35592
17-03-18 06:26:03.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:03.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:03.414 -07 000000474 INF: FPGA: Recv ZSGSRD 35598
17-03-18 06:26:03.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:26:03.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:03.424 -07 000000467 INF: FPGA: Recv ZSGSRD 35594
17-03-18 06:26:03.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:03.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:03.434 -07 000000611 INF: FPGA: Recv ZSGSRD 35592
17-03-18 06:26:03.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:03.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:03.444 -07 000000438 INF: FPGA: Recv ZPIEZORD 31370
17-03-18 06:26:03.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:03.454 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.3 V.
17-03-18 06:26:03.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35594 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35594 (-168.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35590 (-168.1 uncal um), Max = 35598 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:26:03.454 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35594, posNoise = 4, negNoise = 4
17-03-18 06:26:03.454 -07 000000610 INF: Z Motor: After move to -0.168972, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:03.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:26:03.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:03.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:03.454 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:03.454 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:26:03.454 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:03.454 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:03.454 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:26:03.454 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:26:03.454 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:26:03.454 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:26:03.454 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:26:03.454 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:26:03.454 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:26:03.454 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:26:03.464 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:26:03.464 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:26:03.464 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:26:03.464 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:26:03.464 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:26:03.464 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:26:03.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37089 150\n [Camera]
17-03-18 06:26:03.674 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:26:04.134 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:26:04.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:26:04.134 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:04.134 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:04.134 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:26:04.134 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:26:04.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:26:04.134 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:04.134 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:04.134 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:26:04.324 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37089 844
17-03-18 06:26:04.474 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:26:04.514 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:26:04.514 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:26:04.514 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:04.514 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:04.524 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:26:04.524 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:26:04.524 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:04.524 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:04.524 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:26:04.524 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:26:04.694 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:04.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:04.704 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:04.704 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:04.704 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:26:04.704 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:04.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:04.704 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:04.704 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:04.704 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:26:04.884 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:26:04.884 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:04.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37089 150' command took 2 ms to send, 1409 ms to get response, and 1415 ms overall
17-03-18 06:26:04.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:26:04.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.168986758984974. ------
17-03-18 06:26:05.004 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:05.004 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17579 mm
17-03-18 06:26:05.004 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:05.014 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:26:05.014 -07 000000474 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 06:26:05.014 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:05.014 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:05.014 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:26:05.014 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38401, sync = True, waitForSettling = False)
17-03-18 06:26:05.014 -07 000000461 INF: Z Motor: Moving to -0.175789 mm, started at -0.168987 mm, distance = -6.80 um
17-03-18 06:26:05.014 -07 000000462 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:26:05.024 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:05.024 -07 000000474 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:05.024 -07 000000474 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:26:05.024 -07 000000474 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:26:05.024 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:05.034 -07 000000461 INF: FPGA: Xmit ZDACW 38401\n [Z Motor]
17-03-18 06:26:05.034 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:26:05.044 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:26:05.044 -07 000000461 INF: FPGA: 'ZDACW 38401' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:26:05.054 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:05.054 -07 000000629 INF: FPGA: Recv ZDACR 38401
17-03-18 06:26:05.064 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:26:05.064 -07 000000461 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 06:26:05.094 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:26:05.094 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:26:05.094 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:05.094 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:26:05.104 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:26:05.104 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:05.104 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:26:05.104 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:26:05.104 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:05.114 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:26:05.224 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:05.234 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 207 ms to get response, and 225 ms overall
17-03-18 06:26:05.414 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:26:05.414 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:26:05.474 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:05.474 -07 000000611 INF: FPGA: Recv YRDPOS 134579
17-03-18 06:26:05.484 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:05.484 -07 000000474 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:05.484 -07 000000474 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:26:05.484 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 06:26:06.434 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:06.434 -07 000000629 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:26:06.444 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:06.444 -07 000000474 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:06.474 -07 000000474 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:26:06.474 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:26:06.474 -07 000000474 INF: Y Motor: Moved to 65.7129 after 1468 ms (table move)
17-03-18 06:26:06.484 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175789 mm (DAC = 38401)
17-03-18 06:26:06.484 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:06.484 -07 000000569 INF: FPGA: Recv ZSGSRD 36658
17-03-18 06:26:06.494 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:26:06.494 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:06.494 -07 000000455 INF: FPGA: Recv ZSGSRD 36647
17-03-18 06:26:06.504 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:06.504 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:06.504 -07 000000467 INF: FPGA: Recv ZSGSRD 36650
17-03-18 06:26:06.514 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:06.514 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:06.514 -07 000000629 INF: FPGA: Recv ZSGSRD 36649
17-03-18 06:26:06.524 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:06.524 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:06.524 -07 000000382 INF: FPGA: Recv ZSGSRD 36658
17-03-18 06:26:06.534 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:06.534 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:06.534 -07 000000591 INF: FPGA: Recv ZSGSRD 36652
17-03-18 06:26:06.544 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:06.544 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:06.544 -07 000000461 INF: FPGA: Recv ZSGSRD 36656
17-03-18 06:26:06.554 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:06.554 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:06.554 -07 000000501 INF: FPGA: Recv ZSGSRD 36653
17-03-18 06:26:06.564 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:06.564 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:06.564 -07 000000438 INF: FPGA: Recv ZSGSRD 36657
17-03-18 06:26:06.574 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:06.574 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:06.574 -07 000000461 INF: FPGA: Recv ZSGSRD 36651
17-03-18 06:26:06.584 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:06.584 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:06.584 -07 000000479 INF: FPGA: Recv ZPIEZORD 32783
17-03-18 06:26:06.594 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:06.594 -07 000000447 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.860 V. Piezo Error = -8.6 V.
17-03-18 06:26:06.594 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36653 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36652 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36647 (-174.9 uncal um), Max = 36658 (-174.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:26:06.594 -07 000000447 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36653, posNoise = 5, negNoise = 6
17-03-18 06:26:06.594 -07 000000447 INF: Z Motor: After move to -0.175789, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:06.594 -07 000000447 INF: Z Motor: Settle wait time = 1470 ms, measure time = 108 ms (allowed 150 ms), total time = 1578 ms
17-03-18 06:26:06.594 -07 000000447 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 06:26:06.644 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 06:26:06.644 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:26:06.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:06.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:06.644 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:06.644 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:06.644 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:26:06.654 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:06.654 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:26:06.654 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:26:06.654 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:26:06.654 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:26:06.664 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:26:06.664 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:26:06.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:26:06.714 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:26:06.854 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:26:06.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:26:07.014 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:26:07.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:26:07.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:26:07.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:26:07.054 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:26:07.054 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:26:07.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 376 ms to get response, and 386 ms overall
17-03-18 06:26:07.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:26:07.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:07.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:26:07.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:26:07.154 -07 000000461 INF: Autofocus start
17-03-18 06:26:07.154 -07 000000461 INF: MeasureProfile start
17-03-18 06:26:07.154 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:07.154 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:07.164 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:26:07.164 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:26:07.164 -07 000000461 INF: MeasureProfile done
17-03-18 06:26:07.164 -07 000000461 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:26:07.164 -07 000000461 INF: Autofocus finished
17-03-18 06:26:07.364 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:26:07.364 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:26:07.364 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.175789999643099. ----------
17-03-18 06:26:07.364 -07 000000610 INF: Cycle	149	Tile	8	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:26:07.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36915, sync = True, waitForSettling = True)
17-03-18 06:26:07.374 -07 000000610 INF: Z Motor: Moving to -0.168986 mm, started at -0.175790 mm, distance = 6.80 um
17-03-18 06:26:07.374 -07 000000610 INF: FPGA: Xmit ZDACW 36915\n [Z Motor]
17-03-18 06:26:07.374 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:26:07.384 -07 000000610 INF: FPGA: 'ZDACW 36915' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:07.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:07.384 -07 000000479 INF: FPGA: Recv ZDACR 36915
17-03-18 06:26:07.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:07.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:26:07.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:07.544 -07 000000447 INF: FPGA: Recv ZSGSRD 35597
17-03-18 06:26:07.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:07.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:07.554 -07 000000447 INF: FPGA: Recv ZSGSRD 35590
17-03-18 06:26:07.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:07.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:07.564 -07 000000467 INF: FPGA: Recv ZSGSRD 35594
17-03-18 06:26:07.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:07.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:07.574 -07 000000579 INF: FPGA: Recv ZSGSRD 35597
17-03-18 06:26:07.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:07.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:07.584 -07 000000591 INF: FPGA: Recv ZSGSRD 35596
17-03-18 06:26:07.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:07.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:07.594 -07 000000611 INF: FPGA: Recv ZSGSRD 35592
17-03-18 06:26:07.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:07.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:07.604 -07 000000382 INF: FPGA: Recv ZSGSRD 35595
17-03-18 06:26:07.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:07.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:07.614 -07 000000608 INF: FPGA: Recv ZSGSRD 35596
17-03-18 06:26:07.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:07.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:07.624 -07 000000569 INF: FPGA: Recv ZSGSRD 35596
17-03-18 06:26:07.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:07.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:07.634 -07 000000611 INF: FPGA: Recv ZSGSRD 35591
17-03-18 06:26:07.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:07.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:07.644 -07 000000467 INF: FPGA: Recv ZPIEZORD 31360
17-03-18 06:26:07.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:07.654 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.3 V.
17-03-18 06:26:07.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35594 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35596 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35590 (-168.1 uncal um), Max = 35597 (-168.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:26:07.654 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35594, posNoise = 3, negNoise = 4
17-03-18 06:26:07.654 -07 000000610 INF: Z Motor: After move to -0.168986, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:07.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:26:07.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:07.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:07.654 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:07.654 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:26:07.654 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:26:07.654 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:26:07.654 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:07.654 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:07.654 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:26:07.654 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:26:07.654 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:26:07.654 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:26:07.664 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:26:07.664 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:26:07.664 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:26:07.664 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:26:07.664 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:26:07.664 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:26:07.674 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:26:07.674 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:26:07.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37092 150\n [Camera]
17-03-18 06:26:07.874 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:26:08.184 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.986717,
17-03-18 06:26:08.334 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 652
17-03-18 06:26:08.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 652
17-03-18 06:26:08.334 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:08.334 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 652
17-03-18 06:26:08.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 652
17-03-18 06:26:08.344 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:08.344 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:08.344 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:26:08.344 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:08.344 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:26:08.524 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37092 844
17-03-18 06:26:08.674 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:26:08.724 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:26:08.724 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:26:08.724 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:08.724 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:26:08.724 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:26:08.724 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:08.724 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:08.724 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:26:08.724 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:08.734 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:26:08.904 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:08.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:08.904 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:08.904 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:08.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:08.904 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:08.914 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:08.914 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:26:08.914 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:08.914 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:26:09.094 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:26:09.094 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:09.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37092 150' command took 2 ms to send, 1410 ms to get response, and 1414 ms overall
17-03-18 06:26:09.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:26:09.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.168986758984974. ------
17-03-18 06:26:09.094 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:09.094 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17544 mm
17-03-18 06:26:09.094 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:09.094 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:26:09.094 -07 000000629 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 06:26:09.094 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38324, sync = True, waitForSettling = False)
17-03-18 06:26:09.094 -07 000000455 INF: Z Motor: Moving to -0.175436 mm, started at -0.168987 mm, distance = -6.45 um
17-03-18 06:26:09.104 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:09.104 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:09.104 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 9 ms overall
17-03-18 06:26:09.104 -07 000000382 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:26:09.114 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:26:09.114 -07 000000629 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:09.114 -07 000000629 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:26:09.114 -07 000000629 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:26:09.114 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:09.124 -07 000000455 INF: FPGA: Xmit ZDACW 38324\n [Z Motor]
17-03-18 06:26:09.124 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:26:09.134 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:26:09.134 -07 000000455 INF: FPGA: 'ZDACW 38324' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 06:26:09.144 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:09.144 -07 000000467 INF: FPGA: Recv ZDACR 38324
17-03-18 06:26:09.154 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:26:09.154 -07 000000455 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:26:09.314 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:26:09.314 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:26:09.314 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:09.314 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:09.314 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 209 ms overall
17-03-18 06:26:09.314 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:26:09.314 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:26:09.314 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:09.314 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:09.314 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 06:26:09.314 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:09.324 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 06:26:09.504 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:26:09.504 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 06:26:09.564 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:09.564 -07 000000611 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:26:09.574 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:26:09.574 -07 000000629 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:09.574 -07 000000629 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:26:09.574 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 06:26:10.524 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:10.524 -07 000000474 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:26:10.534 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:10.534 -07 000000629 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:10.564 -07 000000629 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:26:10.564 -07 000000629 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:26:10.564 -07 000000629 INF: Y Motor: Moved to 66.5381 after 1468 ms (table move)
17-03-18 06:26:10.574 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175436 mm (DAC = 38324)
17-03-18 06:26:10.574 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:10.574 -07 000000438 INF: FPGA: Recv ZSGSRD 36605
17-03-18 06:26:10.584 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:10.584 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:10.584 -07 000000479 INF: FPGA: Recv ZSGSRD 36593
17-03-18 06:26:10.594 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:10.594 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:10.594 -07 000000608 INF: FPGA: Recv ZSGSRD 36592
17-03-18 06:26:10.604 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:10.604 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:10.604 -07 000000629 INF: FPGA: Recv ZSGSRD 36602
17-03-18 06:26:10.614 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:10.614 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:10.614 -07 000000474 INF: FPGA: Recv ZSGSRD 36592
17-03-18 06:26:10.624 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:10.624 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:10.624 -07 000000501 INF: FPGA: Recv ZSGSRD 36608
17-03-18 06:26:10.634 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:10.634 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:10.634 -07 000000467 INF: FPGA: Recv ZSGSRD 36591
17-03-18 06:26:10.644 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:10.644 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:10.644 -07 000000629 INF: FPGA: Recv ZSGSRD 36599
17-03-18 06:26:10.654 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:10.654 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:10.654 -07 000000474 INF: FPGA: Recv ZSGSRD 36604
17-03-18 06:26:10.664 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:10.664 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:10.664 -07 000000461 INF: FPGA: Recv ZSGSRD 36593
17-03-18 06:26:10.674 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:10.674 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:10.674 -07 000000467 INF: FPGA: Recv ZPIEZORD 32722
17-03-18 06:26:10.684 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:10.684 -07 000000447 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.848 V. Piezo Error = -8.6 V.
17-03-18 06:26:10.684 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36598 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36596 (-174.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36591 (-174.5 uncal um), Max = 36608 (-174.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:26:10.684 -07 000000447 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36598, posNoise = 10, negNoise = 7
17-03-18 06:26:10.684 -07 000000447 INF: Z Motor: After move to -0.175436, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:10.684 -07 000000447 INF: Z Motor: Settle wait time = 1471 ms, measure time = 110 ms (allowed 150 ms), total time = 1581 ms
17-03-18 06:26:10.684 -07 000000447 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 06:26:10.724 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 06:26:10.724 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:26:10.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:10.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:10.724 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:10.724 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:10.724 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:26:10.724 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:10.724 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:26:10.724 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:26:10.734 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:26:10.734 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:26:10.734 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:26:10.734 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:26:10.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:26:10.784 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:26:11.084 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:26:11.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:26:11.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:26:11.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 06:26:11.124 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:26:11.124 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 06:26:11.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:26:11.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:26:11.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:11.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:26:11.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:26:11.224 -07 000000462 INF: Autofocus start
17-03-18 06:26:11.224 -07 000000462 INF: MeasureProfile start
17-03-18 06:26:11.224 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:11.224 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:11.234 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:26:11.234 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:26:11.234 -07 000000462 INF: MeasureProfile done
17-03-18 06:26:11.234 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:26:11.234 -07 000000462 INF: Autofocus finished
17-03-18 06:26:11.434 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:26:11.434 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 06:26:11.434 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175436667975302. ----------
17-03-18 06:26:11.434 -07 000000610 INF: Cycle	149	Tile	9	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:26:11.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36839, sync = True, waitForSettling = True)
17-03-18 06:26:11.444 -07 000000610 INF: Z Motor: Moving to -0.168638 mm, started at -0.175437 mm, distance = 6.80 um
17-03-18 06:26:11.444 -07 000000610 INF: FPGA: Xmit ZDACW 36839\n [Z Motor]
17-03-18 06:26:11.444 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:26:11.454 -07 000000610 INF: FPGA: 'ZDACW 36839' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:26:11.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:11.454 -07 000000462 INF: FPGA: Recv ZDACR 36839
17-03-18 06:26:11.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:11.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:26:11.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:11.614 -07 000000462 INF: FPGA: Recv ZSGSRD 35543
17-03-18 06:26:11.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:11.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:11.624 -07 000000382 INF: FPGA: Recv ZSGSRD 35548
17-03-18 06:26:11.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:11.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:11.634 -07 000000611 INF: FPGA: Recv ZSGSRD 35534
17-03-18 06:26:11.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:11.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:11.644 -07 000000467 INF: FPGA: Recv ZSGSRD 35541
17-03-18 06:26:11.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:11.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:11.654 -07 000000579 INF: FPGA: Recv ZSGSRD 35546
17-03-18 06:26:11.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:11.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:11.664 -07 000000629 INF: FPGA: Recv ZSGSRD 35539
17-03-18 06:26:11.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:11.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:11.674 -07 000000382 INF: FPGA: Recv ZSGSRD 35542
17-03-18 06:26:11.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:11.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:11.684 -07 000000462 INF: FPGA: Recv ZSGSRD 35547
17-03-18 06:26:11.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:11.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:11.694 -07 000000461 INF: FPGA: Recv ZSGSRD 35544
17-03-18 06:26:11.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:26:11.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:11.704 -07 000000467 INF: FPGA: Recv ZSGSRD 35547
17-03-18 06:26:11.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:11.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:11.714 -07 000000447 INF: FPGA: Recv ZPIEZORD 31309
17-03-18 06:26:11.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:11.724 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.3 V.
17-03-18 06:26:11.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35543 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35544 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35534 (-167.7 uncal um), Max = 35548 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:26:11.724 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35543, posNoise = 5, negNoise = 9
17-03-18 06:26:11.724 -07 000000610 INF: Z Motor: After move to -0.168638, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:11.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:26:11.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:11.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:11.724 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:11.724 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:11.724 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:26:11.724 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:11.724 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:26:11.724 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:26:11.724 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:26:11.724 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:26:11.724 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:26:11.724 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:26:11.724 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:26:11.724 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:26:11.724 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:26:11.734 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:26:11.734 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:26:11.734 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:26:11.734 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:26:11.734 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:26:11.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37016 150\n [Camera]
17-03-18 06:26:11.854 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:26:11.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:26:11.944 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:26:12.404 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 654
17-03-18 06:26:12.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 654
17-03-18 06:26:12.404 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:12.404 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:12.404 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:26:12.404 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 654
17-03-18 06:26:12.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 654
17-03-18 06:26:12.404 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:12.404 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:12.404 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:26:12.594 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37016 844
17-03-18 06:26:12.744 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:26:12.804 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:26:12.804 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:26:12.804 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:12.804 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:26:12.804 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:26:12.804 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:12.804 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:12.804 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:12.804 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:26:12.814 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:26:12.964 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:12.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:12.964 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:12.964 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:12.964 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:26:12.964 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:12.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:12.964 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:12.964 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:12.964 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 06:26:13.154 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-18 06:26:13.154 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:13.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37016 150' command took 2 ms to send, 1407 ms to get response, and 1415 ms overall
17-03-18 06:26:13.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:26:13.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.168659124165745. ------
17-03-18 06:26:13.284 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17535 mm
17-03-18 06:26:13.284 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:13.294 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:13.294 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:26:13.294 -07 000000461 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 06:26:13.294 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38305, sync = True, waitForSettling = False)
17-03-18 06:26:13.294 -07 000000438 INF: Z Motor: Moving to -0.175349 mm, started at -0.168659 mm, distance = -6.69 um
17-03-18 06:26:13.294 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:13.304 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:26:13.304 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:13.304 -07 000000629 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:26:13.314 -07 000000438 INF: FPGA: Xmit ZDACW 38305\n [Z Motor]
17-03-18 06:26:13.314 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:26:13.314 -07 000000461 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:13.314 -07 000000461 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:26:13.314 -07 000000461 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:26:13.314 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:26:13.324 -07 000000438 INF: FPGA: 'ZDACW 38305' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:26:13.324 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:13.334 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:26:13.344 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:13.344 -07 000000455 INF: FPGA: Recv ZDACR 38305
17-03-18 06:26:13.354 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:26:13.354 -07 000000438 INF: Z Motor: MoveAbsStepped took 58 ms (did NOT wait for settling yet))
17-03-18 06:26:13.374 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:26:13.374 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:26:13.374 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:13.374 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:26:13.374 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:26:13.374 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:13.374 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:13.374 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:26:13.374 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:26:13.384 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:26:13.524 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:13.524 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:26:13.604 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.979922,
17-03-18 06:26:13.714 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 06:26:13.714 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-18 06:26:13.764 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:13.764 -07 000000467 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:26:13.774 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:26:13.774 -07 000000461 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:13.774 -07 000000461 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 06:26:13.774 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.117 mm/sec
17-03-18 06:26:14.724 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:14.724 -07 000000501 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:26:14.734 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:14.734 -07 000000461 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:14.764 -07 000000461 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:26:14.764 -07 000000461 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:26:14.764 -07 000000461 INF: Y Motor: Moved to 67.3706 after 1472 ms (table move)
17-03-18 06:26:14.764 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175349 mm (DAC = 38305)
17-03-18 06:26:14.764 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:14.774 -07 000000461 INF: FPGA: Recv ZSGSRD 36587
17-03-18 06:26:14.774 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:26:14.774 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:14.774 -07 000000611 INF: FPGA: Recv ZSGSRD 36588
17-03-18 06:26:14.784 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:26:14.784 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:14.784 -07 000000579 INF: FPGA: Recv ZSGSRD 36584
17-03-18 06:26:14.794 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:14.794 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:14.794 -07 000000462 INF: FPGA: Recv ZSGSRD 36586
17-03-18 06:26:14.804 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:14.804 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:14.804 -07 000000382 INF: FPGA: Recv ZSGSRD 36592
17-03-18 06:26:14.814 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:14.814 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:14.814 -07 000000438 INF: FPGA: Recv ZSGSRD 36590
17-03-18 06:26:14.824 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:14.824 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:14.824 -07 000000591 INF: FPGA: Recv ZSGSRD 36585
17-03-18 06:26:14.834 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:14.834 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:14.834 -07 000000579 INF: FPGA: Recv ZSGSRD 36582
17-03-18 06:26:14.844 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:14.844 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:14.844 -07 000000467 INF: FPGA: Recv ZSGSRD 36577
17-03-18 06:26:14.854 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:14.854 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:14.854 -07 000000479 INF: FPGA: Recv ZSGSRD 36585
17-03-18 06:26:14.864 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:14.864 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:14.864 -07 000000591 INF: FPGA: Recv ZPIEZORD 32697
17-03-18 06:26:14.874 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:14.874 -07 000000474 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.845 V. Piezo Error = -8.6 V.
17-03-18 06:26:14.874 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36586 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36586 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36577 (-174.4 uncal um), Max = 36592 (-174.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:26:14.874 -07 000000474 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36586, posNoise = 6, negNoise = 9
17-03-18 06:26:14.874 -07 000000474 INF: Z Motor: After move to -0.175349, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:14.874 -07 000000474 INF: Z Motor: Settle wait time = 1477 ms, measure time = 101 ms (allowed 150 ms), total time = 1578 ms
17-03-18 06:26:14.874 -07 000000474 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 06:26:14.924 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 06:26:14.924 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:26:14.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:14.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:14.924 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:14.924 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:14.924 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:26:14.924 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:14.924 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:26:14.924 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:26:14.934 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:26:14.934 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:26:14.934 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:26:14.934 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:26:14.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:26:14.984 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:26:15.284 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:26:15.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:26:15.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:26:15.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:26:15.324 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:26:15.324 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:26:15.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:26:15.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:26:15.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:15.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:26:15.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:26:15.424 -07 000000501 INF: Autofocus start
17-03-18 06:26:15.424 -07 000000501 INF: MeasureProfile start
17-03-18 06:26:15.424 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:15.424 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:15.434 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:26:15.434 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:26:15.434 -07 000000501 INF: MeasureProfile done
17-03-18 06:26:15.434 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:26:15.434 -07 000000501 INF: Autofocus finished
17-03-18 06:26:15.634 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:26:15.634 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 06:26:15.644 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.175359577429601. ----------
17-03-18 06:26:15.644 -07 000000610 INF: Cycle	149	Tile	10	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:26:15.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36820, sync = True, waitForSettling = True)
17-03-18 06:26:15.644 -07 000000610 INF: Z Motor: Moving to -0.168551 mm, started at -0.175360 mm, distance = 6.81 um
17-03-18 06:26:15.644 -07 000000610 INF: FPGA: Xmit ZDACW 36820\n [Z Motor]
17-03-18 06:26:15.644 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:26:15.654 -07 000000610 INF: FPGA: 'ZDACW 36820' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:26:15.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:15.654 -07 000000591 INF: FPGA: Recv ZDACR 36820
17-03-18 06:26:15.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:15.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:26:15.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:15.814 -07 000000501 INF: FPGA: Recv ZSGSRD 35526
17-03-18 06:26:15.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:15.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:15.824 -07 000000447 INF: FPGA: Recv ZSGSRD 35528
17-03-18 06:26:15.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:15.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:15.834 -07 000000467 INF: FPGA: Recv ZSGSRD 35526
17-03-18 06:26:15.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:15.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:15.844 -07 000000438 INF: FPGA: Recv ZSGSRD 35531
17-03-18 06:26:15.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:15.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:15.854 -07 000000569 INF: FPGA: Recv ZSGSRD 35527
17-03-18 06:26:15.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:15.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:15.864 -07 000000579 INF: FPGA: Recv ZSGSRD 35524
17-03-18 06:26:15.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:15.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:15.874 -07 000000608 INF: FPGA: Recv ZSGSRD 35526
17-03-18 06:26:15.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:15.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:15.884 -07 000000501 INF: FPGA: Recv ZSGSRD 35523
17-03-18 06:26:15.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:15.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:15.894 -07 000000461 INF: FPGA: Recv ZSGSRD 35533
17-03-18 06:26:15.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:15.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:15.904 -07 000000579 INF: FPGA: Recv ZSGSRD 35524
17-03-18 06:26:15.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:15.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:15.914 -07 000000467 INF: FPGA: Recv ZPIEZORD 31293
17-03-18 06:26:15.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:15.924 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.3 V.
17-03-18 06:26:15.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35527 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35526 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35523 (-167.7 uncal um), Max = 35533 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:26:15.924 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35527, posNoise = 6, negNoise = 4
17-03-18 06:26:15.924 -07 000000610 INF: Z Motor: After move to -0.168551, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:15.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:26:15.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:15.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:15.924 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:15.924 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:15.924 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:26:15.924 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:26:15.924 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:26:15.924 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:15.924 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:26:15.924 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:26:15.924 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:26:15.924 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:26:15.934 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:26:15.934 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:26:15.934 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:26:15.934 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:26:15.944 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:26:15.944 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:26:15.944 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:26:15.944 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:26:15.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36997 150\n [Camera]
17-03-18 06:26:16.154 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:26:16.614 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:26:16.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:26:16.614 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:16.614 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:26:16.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:26:16.614 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:16.614 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:16.614 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:26:16.614 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:16.624 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:26:16.804 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36997 846
17-03-18 06:26:16.854 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:26:16.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:26:16.954 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:26:17.004 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 06:26:17.004 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:26:17.004 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:17.004 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:26:17.004 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:26:17.004 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:17.004 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:17.004 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:26:17.004 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:17.014 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:26:17.174 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:17.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:17.174 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:17.174 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:17.174 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 06:26:17.174 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:17.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:17.174 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:17.174 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:17.174 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:26:17.364 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:26:17.364 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:17.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36997 150' command took 2 ms to send, 1406 ms to get response, and 1415 ms overall
17-03-18 06:26:17.364 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:26:17.364 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37060546875, Z-Position -0.168556336771476. ------
17-03-18 06:26:17.484 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17490 mm
17-03-18 06:26:17.484 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:17.484 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:17.484 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:26:17.484 -07 000000479 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 06:26:17.484 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38207, sync = True, waitForSettling = False)
17-03-18 06:26:17.484 -07 000000608 INF: Z Motor: Moving to -0.174900 mm, started at -0.168556 mm, distance = -6.34 um
17-03-18 06:26:17.494 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:17.494 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:17.494 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:26:17.494 -07 000000591 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:26:17.504 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:17.504 -07 000000479 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:17.504 -07 000000608 INF: FPGA: Xmit ZDACW 38207\n [Z Motor]
17-03-18 06:26:17.504 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:26:17.504 -07 000000479 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:26:17.504 -07 000000479 INF: Y Motor: Moving 1346 steps-25
17-03-18 06:26:17.514 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:17.514 -07 000000608 INF: FPGA: 'ZDACW 38207' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:26:17.524 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:26:17.534 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:17.534 -07 000000611 INF: FPGA: Recv ZDACR 38207
17-03-18 06:26:17.544 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:26:17.544 -07 000000608 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 06:26:17.574 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:26:17.574 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:26:17.574 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:17.574 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:26:17.574 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:26:17.574 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:17.574 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:17.574 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:26:17.584 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:17.584 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:26:17.714 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:17.714 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:26:17.894 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 06:26:17.894 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 06:26:17.944 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:17.954 -07 000000455 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:26:17.964 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:17.964 -07 000000479 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:17.964 -07 000000479 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:26:17.964 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.842 mm, average velocity = 2.148 mm/sec
17-03-18 06:26:18.914 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:18.914 -07 000000591 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:26:18.924 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:18.924 -07 000000479 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:18.954 -07 000000479 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:26:18.954 -07 000000479 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:26:18.954 -07 000000479 INF: Y Motor: Moved to 68.2036 after 1464 ms (table move)
17-03-18 06:26:18.954 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174900 mm (DAC = 38207)
17-03-18 06:26:18.964 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.004458,
17-03-18 06:26:18.974 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:18.974 -07 000000455 INF: FPGA: Recv ZSGSRD 36504
17-03-18 06:26:18.984 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:26:19.004 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:19.004 -07 000000569 INF: FPGA: Recv ZSGSRD 36522
17-03-18 06:26:19.014 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:26:19.034 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:19.034 -07 000000467 INF: FPGA: Recv ZSGSRD 36521
17-03-18 06:26:19.044 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:26:19.044 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:19.044 -07 000000611 INF: FPGA: Recv ZSGSRD 36509
17-03-18 06:26:19.054 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:19.054 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:19.054 -07 000000382 INF: FPGA: Recv ZSGSRD 36520
17-03-18 06:26:19.064 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:19.064 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:19.064 -07 000000608 INF: FPGA: Recv ZSGSRD 36511
17-03-18 06:26:19.074 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:19.074 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:19.074 -07 000000479 INF: FPGA: Recv ZSGSRD 36514
17-03-18 06:26:19.084 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:19.084 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:19.084 -07 000000569 INF: FPGA: Recv ZSGSRD 36519
17-03-18 06:26:19.094 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:19.094 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:19.094 -07 000000591 INF: FPGA: Recv ZSGSRD 36516
17-03-18 06:26:19.104 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:19.104 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:19.104 -07 000000462 INF: FPGA: Recv ZSGSRD 36519
17-03-18 06:26:19.114 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:19.114 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:19.114 -07 000000467 INF: FPGA: Recv ZPIEZORD 32605
17-03-18 06:26:19.124 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:19.124 -07 000000474 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.830 V. Piezo Error = -8.6 V.
17-03-18 06:26:19.124 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36516 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36518 (-174.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36504 (-173.9 uncal um), Max = 36522 (-174.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 06:26:19.124 -07 000000474 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36516, posNoise = 6, negNoise = 12
17-03-18 06:26:19.124 -07 000000474 INF: Z Motor: After move to -0.174900, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:19.124 -07 000000474 INF: Z Motor: Settle wait time = 1468 ms, measure time = 163 ms (allowed 150 ms), total time = 1631 ms
17-03-18 06:26:19.124 -07 000000474 INF: Z Motor: Warning: Actual position measuring time = 163 ms, longer than max expected time of 150 ms
17-03-18 06:26:19.124 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 06:26:19.124 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:26:19.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:19.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:19.124 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:19.124 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:19.134 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:26:19.134 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:19.134 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:26:19.134 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:26:19.134 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:26:19.134 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:26:19.144 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:26:19.144 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:26:19.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:26:19.184 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:26:19.484 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:26:19.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:26:19.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:26:19.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:26:19.524 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:26:19.524 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 06:26:19.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:26:19.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:26:19.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:19.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:26:19.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:26:19.624 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:19.624 -07 000000461 INF: Autofocus start
17-03-18 06:26:19.624 -07 000000461 INF: MeasureProfile start
17-03-18 06:26:19.624 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:19.634 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:26:19.634 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:26:19.634 -07 000000461 INF: MeasureProfile done
17-03-18 06:26:19.634 -07 000000461 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 06:26:19.634 -07 000000461 INF: Autofocus finished
17-03-18 06:26:19.834 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:26:19.834 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 06:26:19.844 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.174909882579678. ----------
17-03-18 06:26:19.844 -07 000000610 INF: Cycle	149	Tile	11	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:26:19.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36687, sync = True, waitForSettling = True)
17-03-18 06:26:19.844 -07 000000610 INF: Z Motor: Moving to -0.167942 mm, started at -0.174910 mm, distance = 6.97 um
17-03-18 06:26:19.844 -07 000000610 INF: FPGA: Xmit ZDACW 36687\n [Z Motor]
17-03-18 06:26:19.844 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:26:19.854 -07 000000610 INF: FPGA: 'ZDACW 36687' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:26:19.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:19.854 -07 000000438 INF: FPGA: Recv ZDACR 36687
17-03-18 06:26:19.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:19.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:26:20.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:20.014 -07 000000447 INF: FPGA: Recv ZSGSRD 35441
17-03-18 06:26:20.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:20.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:20.024 -07 000000479 INF: FPGA: Recv ZSGSRD 35432
17-03-18 06:26:20.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:20.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:20.034 -07 000000611 INF: FPGA: Recv ZSGSRD 35430
17-03-18 06:26:20.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:20.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:20.044 -07 000000569 INF: FPGA: Recv ZSGSRD 35432
17-03-18 06:26:20.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:20.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:20.054 -07 000000461 INF: FPGA: Recv ZSGSRD 35429
17-03-18 06:26:20.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:20.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:20.064 -07 000000474 INF: FPGA: Recv ZSGSRD 35438
17-03-18 06:26:20.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:20.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:20.074 -07 000000579 INF: FPGA: Recv ZSGSRD 35429
17-03-18 06:26:20.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:20.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:20.084 -07 000000455 INF: FPGA: Recv ZSGSRD 35436
17-03-18 06:26:20.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:20.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:20.094 -07 000000591 INF: FPGA: Recv ZSGSRD 35431
17-03-18 06:26:20.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:20.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:20.104 -07 000000479 INF: FPGA: Recv ZSGSRD 35428
17-03-18 06:26:20.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:20.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:20.114 -07 000000611 INF: FPGA: Recv ZPIEZORD 31158
17-03-18 06:26:20.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:20.124 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -9.4 V.
17-03-18 06:26:20.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35433 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35432 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35428 (-167.1 uncal um), Max = 35441 (-167.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:26:20.124 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35433, posNoise = 8, negNoise = 5
17-03-18 06:26:20.124 -07 000000610 INF: Z Motor: After move to -0.167942, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:20.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:26:20.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:20.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:20.124 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:20.124 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:20.124 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:26:20.124 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:20.124 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:26:20.124 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:26:20.134 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:26:20.134 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:26:20.134 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:26:20.134 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:26:20.134 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:26:20.134 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:26:20.134 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:26:20.134 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:26:20.144 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:26:20.144 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:26:20.144 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:26:20.144 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:26:20.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36864 150\n [Camera]
17-03-18 06:26:20.344 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:26:20.804 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:26:20.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:26:20.804 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:20.804 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:26:20.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:26:20.814 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:20.814 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:20.814 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:26:20.814 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:20.814 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:26:20.994 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36864 844
17-03-18 06:26:21.144 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:26:21.204 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:26:21.204 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:26:21.204 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:21.214 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:26:21.214 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:26:21.214 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:21.214 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:21.214 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:26:21.214 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:21.224 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:26:21.374 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:21.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:21.374 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:21.374 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:21.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:21.374 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:21.384 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:21.384 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:26:21.384 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:21.384 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 06:26:21.564 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-18 06:26:21.564 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:21.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36864 150' command took 2 ms to send, 1402 ms to get response, and 1414 ms overall
17-03-18 06:26:21.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:26:21.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.167952460830151. ------
17-03-18 06:26:21.564 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:21.564 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17449 mm
17-03-18 06:26:21.564 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:21.574 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:21.574 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38118, sync = True, waitForSettling = False)
17-03-18 06:26:21.574 -07 000000455 INF: Z Motor: Moving to -0.174493 mm, started at -0.167952 mm, distance = -6.54 um
17-03-18 06:26:21.574 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:26:21.574 -07 000000591 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 06:26:21.574 -07 000000455 INF: FPGA: Xmit ZDACW 38118\n [Z Motor]
17-03-18 06:26:21.574 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:26:21.574 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:26:21.584 -07 000000455 INF: FPGA: 'ZDACW 38118' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:26:21.584 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:21.584 -07 000000382 INF: FPGA: Recv ZDACR 38118
17-03-18 06:26:21.594 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:21.594 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:21.594 -07 000000455 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-18 06:26:21.594 -07 000000447 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:26:21.604 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:21.604 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:26:21.604 -07 000000591 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:21.604 -07 000000591 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:26:21.604 -07 000000591 INF: Y Motor: Moving 1342 steps-18
17-03-18 06:26:21.614 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:26:21.764 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:26:21.764 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:26:21.764 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:21.774 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:21.774 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 06:26:21.774 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:26:21.774 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:21.774 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:21.774 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:26:21.774 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:26:21.804 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:21.804 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 230 ms overall
17-03-18 06:26:21.864 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:26:21.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:26:21.984 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:26:21.984 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:26:22.034 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:22.044 -07 000000462 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:26:22.054 -07 000000591 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:22.054 -07 000000591 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:22.054 -07 000000591 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 06:26:22.054 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.168 mm/sec
17-03-18 06:26:23.004 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:23.004 -07 000000447 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:26:23.014 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:23.014 -07 000000591 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:23.044 -07 000000591 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:26:23.044 -07 000000591 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:26:23.044 -07 000000591 INF: Y Motor: Moved to 69.0259 after 1470 ms (table move)
17-03-18 06:26:23.044 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174493 mm (DAC = 38118)
17-03-18 06:26:23.044 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:23.044 -07 000000461 INF: FPGA: Recv ZSGSRD 36457
17-03-18 06:26:23.054 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:26:23.054 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:23.054 -07 000000438 INF: FPGA: Recv ZSGSRD 36452
17-03-18 06:26:23.064 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:23.064 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:23.064 -07 000000479 INF: FPGA: Recv ZSGSRD 36447
17-03-18 06:26:23.074 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:23.074 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:23.074 -07 000000474 INF: FPGA: Recv ZSGSRD 36454
17-03-18 06:26:23.084 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:23.084 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:23.084 -07 000000382 INF: FPGA: Recv ZSGSRD 36457
17-03-18 06:26:23.094 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:23.094 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:23.094 -07 000000461 INF: FPGA: Recv ZSGSRD 36458
17-03-18 06:26:23.104 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:23.104 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:23.104 -07 000000462 INF: FPGA: Recv ZSGSRD 36450
17-03-18 06:26:23.114 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:23.114 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:23.114 -07 000000474 INF: FPGA: Recv ZSGSRD 36451
17-03-18 06:26:23.124 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:23.124 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:23.124 -07 000000591 INF: FPGA: Recv ZSGSRD 36451
17-03-18 06:26:23.134 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:23.134 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:23.134 -07 000000479 INF: FPGA: Recv ZSGSRD 36448
17-03-18 06:26:23.144 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:26:23.144 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:23.144 -07 000000461 INF: FPGA: Recv ZPIEZORD 32553
17-03-18 06:26:23.154 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:23.154 -07 000000608 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.816 V. Piezo Error = -8.6 V.
17-03-18 06:26:23.154 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36452 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36452 (-173.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36447 (-173.6 uncal um), Max = 36458 (-173.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:26:23.154 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36452, posNoise = 6, negNoise = 5
17-03-18 06:26:23.154 -07 000000608 INF: Z Motor: After move to -0.174493, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:23.154 -07 000000608 INF: Z Motor: Settle wait time = 1474 ms, measure time = 104 ms (allowed 150 ms), total time = 1578 ms
17-03-18 06:26:23.154 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:26:23.204 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 06:26:23.204 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:26:23.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:23.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:23.214 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:23.214 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:26:23.214 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:23.214 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:23.214 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:26:23.214 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:26:23.214 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:26:23.214 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:26:23.224 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:26:23.224 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:26:23.224 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:26:23.274 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:26:23.574 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:26:23.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:26:23.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:26:23.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 06:26:23.614 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:26:23.614 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 06:26:23.614 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:26:23.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:26:23.684 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:23.684 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:26:23.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:26:23.714 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:23.714 -07 000000455 INF: Autofocus start
17-03-18 06:26:23.714 -07 000000455 INF: MeasureProfile start
17-03-18 06:26:23.714 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:23.724 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:26:23.724 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:26:23.724 -07 000000455 INF: MeasureProfile done
17-03-18 06:26:23.724 -07 000000455 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:26:23.724 -07 000000455 INF: Autofocus finished
17-03-18 06:26:23.924 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:26:23.924 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:26:23.924 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.174498733002605. ----------
17-03-18 06:26:23.924 -07 000000610 INF: Cycle	149	Tile	12	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:26:23.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36651, sync = True, waitForSettling = True)
17-03-18 06:26:23.934 -07 000000610 INF: Z Motor: Moving to -0.167778 mm, started at -0.174499 mm, distance = 6.72 um
17-03-18 06:26:23.934 -07 000000610 INF: FPGA: Xmit ZDACW 36651\n [Z Motor]
17-03-18 06:26:23.934 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:26:23.944 -07 000000610 INF: FPGA: 'ZDACW 36651' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:26:23.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:23.944 -07 000000467 INF: FPGA: Recv ZDACR 36651
17-03-18 06:26:23.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:23.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:26:24.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:24.104 -07 000000461 INF: FPGA: Recv ZSGSRD 35409
17-03-18 06:26:24.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:24.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:24.114 -07 000000569 INF: FPGA: Recv ZSGSRD 35408
17-03-18 06:26:24.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:24.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:24.124 -07 000000447 INF: FPGA: Recv ZSGSRD 35403
17-03-18 06:26:24.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:24.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:24.134 -07 000000462 INF: FPGA: Recv ZSGSRD 35405
17-03-18 06:26:24.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:24.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:24.144 -07 000000579 INF: FPGA: Recv ZSGSRD 35409
17-03-18 06:26:24.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:24.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:24.154 -07 000000629 INF: FPGA: Recv ZSGSRD 35411
17-03-18 06:26:24.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:24.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:24.164 -07 000000474 INF: FPGA: Recv ZSGSRD 35403
17-03-18 06:26:24.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:24.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:24.174 -07 000000382 INF: FPGA: Recv ZSGSRD 35410
17-03-18 06:26:24.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:24.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:24.184 -07 000000501 INF: FPGA: Recv ZSGSRD 35412
17-03-18 06:26:24.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:24.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:24.194 -07 000000479 INF: FPGA: Recv ZSGSRD 35404
17-03-18 06:26:24.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:24.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:24.204 -07 000000474 INF: FPGA: Recv ZPIEZORD 31127
17-03-18 06:26:24.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:24.214 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.593 V. Piezo Error = -9.4 V.
17-03-18 06:26:24.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35407 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35408 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35403 (-166.9 uncal um), Max = 35412 (-166.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:26:24.214 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35407, posNoise = 5, negNoise = 4
17-03-18 06:26:24.214 -07 000000610 INF: Z Motor: After move to -0.167778, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:24.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:26:24.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:24.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:24.214 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:24.214 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:24.214 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:26:24.214 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:24.214 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:26:24.214 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:26:24.214 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:26:24.214 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:26:24.214 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:26:24.214 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:26:24.224 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:26:24.224 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:26:24.224 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:26:24.224 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:26:24.234 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:26:24.234 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:26:24.234 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:26:24.234 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:26:24.234 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36827 150\n [Camera]
17-03-18 06:26:24.354 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.999021,
17-03-18 06:26:24.434 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:26:24.894 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:26:24.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:26:24.894 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:24.894 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:24.894 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:26:24.894 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:26:24.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:26:24.894 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:24.894 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:24.894 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:26:25.084 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36827 844
17-03-18 06:26:25.234 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:26:25.284 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:26:25.284 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:26:25.284 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:25.294 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:25.294 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:26:25.294 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:26:25.294 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:25.294 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:25.294 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:26:25.294 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:26:25.454 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:25.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:25.454 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:25.454 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:25.454 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:26:25.464 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:25.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:25.464 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:25.464 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:25.464 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:26:25.644 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:26:25.654 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:25.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36827 150' command took 2 ms to send, 1410 ms to get response, and 1415 ms overall
17-03-18 06:26:25.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:26:25.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.167785431314465. ------
17-03-18 06:26:25.654 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:25.654 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17414 mm
17-03-18 06:26:25.654 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:25.654 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:25.654 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:26:25.654 -07 000000611 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 06:26:25.654 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38041, sync = True, waitForSettling = False)
17-03-18 06:26:25.654 -07 000000579 INF: Z Motor: Moving to -0.174141 mm, started at -0.167785 mm, distance = -6.36 um
17-03-18 06:26:25.664 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:26:25.784 -07 000000579 INF: FPGA: Xmit ZDACW 38041\n [Z Motor]
17-03-18 06:26:25.784 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:26:25.794 -07 000000579 INF: FPGA: 'ZDACW 38041' command took 0 ms to send, 0 ms to get response, and 131 ms overall
17-03-18 06:26:25.794 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:25.804 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:25.804 -07 000000438 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:26:25.814 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:25.814 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 151 ms overall
17-03-18 06:26:25.814 -07 000000611 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:25.814 -07 000000611 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:26:25.814 -07 000000611 INF: Y Motor: Moving 1355 steps-34
17-03-18 06:26:25.814 -07 000000447 INF: FPGA: Recv ZDACR 38041
17-03-18 06:26:25.824 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:26:25.824 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:26:25.824 -07 000000579 INF: Z Motor: MoveAbsStepped took 161 ms (did NOT wait for settling yet))
17-03-18 06:26:25.864 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:26:25.864 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:26:25.864 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:25.864 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:26:25.864 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:26:25.864 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:25.864 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:25.874 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:26:25.874 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:26:25.874 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:26:25.994 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:25.994 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-18 06:26:26.194 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:26:26.194 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 387 ms overall
17-03-18 06:26:26.254 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:26.254 -07 000000629 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:26:26.264 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:26.264 -07 000000611 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:26.264 -07 000000611 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:26:26.264 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.847 mm, average velocity = 2.188 mm/sec
17-03-18 06:26:26.864 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:26:26.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:26:27.214 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:27.214 -07 000000467 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:26:27.224 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:27.224 -07 000000611 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:27.254 -07 000000611 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:26:27.254 -07 000000611 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:26:27.254 -07 000000611 INF: Y Motor: Moved to 69.8618 after 1595 ms (table move)
17-03-18 06:26:27.254 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174141 mm (DAC = 38041)
17-03-18 06:26:27.254 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:27.254 -07 000000467 INF: FPGA: Recv ZSGSRD 36391
17-03-18 06:26:27.264 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:26:27.264 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:27.264 -07 000000629 INF: FPGA: Recv ZSGSRD 36402
17-03-18 06:26:27.274 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:27.274 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:27.274 -07 000000579 INF: FPGA: Recv ZSGSRD 36398
17-03-18 06:26:27.284 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:27.284 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:27.284 -07 000000569 INF: FPGA: Recv ZSGSRD 36395
17-03-18 06:26:27.294 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:27.294 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:27.294 -07 000000382 INF: FPGA: Recv ZSGSRD 36392
17-03-18 06:26:27.304 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:27.304 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:27.304 -07 000000629 INF: FPGA: Recv ZSGSRD 36402
17-03-18 06:26:27.314 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:27.314 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:27.314 -07 000000579 INF: FPGA: Recv ZSGSRD 36400
17-03-18 06:26:27.324 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:27.324 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:27.324 -07 000000479 INF: FPGA: Recv ZSGSRD 36397
17-03-18 06:26:27.334 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:27.334 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:27.334 -07 000000474 INF: FPGA: Recv ZSGSRD 36400
17-03-18 06:26:27.344 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:27.344 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:27.344 -07 000000447 INF: FPGA: Recv ZSGSRD 36401
17-03-18 06:26:27.354 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:27.354 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:27.354 -07 000000479 INF: FPGA: Recv ZPIEZORD 32430
17-03-18 06:26:27.364 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:27.364 -07 000000462 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.805 V. Piezo Error = -8.8 V.
17-03-18 06:26:27.364 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36398 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36399 (-173.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36391 (-173.2 uncal um), Max = 36402 (-173.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:26:27.364 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36398, posNoise = 4, negNoise = 7
17-03-18 06:26:27.364 -07 000000462 INF: Z Motor: After move to -0.174141, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:27.364 -07 000000462 INF: Z Motor: Settle wait time = 1598 ms, measure time = 103 ms (allowed 150 ms), total time = 1701 ms
17-03-18 06:26:27.364 -07 000000462 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:26:27.414 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1754 ms
17-03-18 06:26:27.414 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:26:27.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:27.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:27.414 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:27.424 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:27.424 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:26:27.424 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:27.424 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:26:27.424 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:26:27.424 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:26:27.424 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:26:27.434 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:26:27.434 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:26:27.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:26:27.484 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:26:27.784 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:26:27.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:26:27.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:26:27.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:26:27.824 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:26:27.824 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:26:27.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 387 ms overall
17-03-18 06:26:27.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:26:27.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:27.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:26:27.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:26:27.924 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:27.924 -07 000000608 INF: Autofocus start
17-03-18 06:26:27.924 -07 000000608 INF: MeasureProfile start
17-03-18 06:26:27.924 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:27.934 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:26:27.934 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:26:27.934 -07 000000608 INF: MeasureProfile done
17-03-18 06:26:27.934 -07 000000608 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:26:27.934 -07 000000608 INF: Autofocus finished
17-03-18 06:26:28.134 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:26:28.134 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:26:28.134 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.17415182554695. ----------
17-03-18 06:26:28.134 -07 000000610 INF: Cycle	149	Tile	13	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:26:28.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36574, sync = True, waitForSettling = True)
17-03-18 06:26:28.144 -07 000000610 INF: Z Motor: Moving to -0.167425 mm, started at -0.174152 mm, distance = 6.73 um
17-03-18 06:26:28.144 -07 000000610 INF: FPGA: Xmit ZDACW 36574\n [Z Motor]
17-03-18 06:26:28.144 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:26:28.154 -07 000000610 INF: FPGA: 'ZDACW 36574' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:28.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:28.154 -07 000000462 INF: FPGA: Recv ZDACR 36574
17-03-18 06:26:28.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:28.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:26:28.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:28.314 -07 000000474 INF: FPGA: Recv ZSGSRD 35353
17-03-18 06:26:28.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:28.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:28.324 -07 000000438 INF: FPGA: Recv ZSGSRD 35354
17-03-18 06:26:28.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:28.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:28.334 -07 000000461 INF: FPGA: Recv ZSGSRD 35351
17-03-18 06:26:28.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:28.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:28.344 -07 000000501 INF: FPGA: Recv ZSGSRD 35349
17-03-18 06:26:28.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:28.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:28.354 -07 000000611 INF: FPGA: Recv ZSGSRD 35347
17-03-18 06:26:28.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:28.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:28.364 -07 000000608 INF: FPGA: Recv ZSGSRD 35350
17-03-18 06:26:28.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:28.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:28.374 -07 000000455 INF: FPGA: Recv ZSGSRD 35352
17-03-18 06:26:28.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:28.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:28.384 -07 000000569 INF: FPGA: Recv ZSGSRD 35352
17-03-18 06:26:28.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:28.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:28.394 -07 000000479 INF: FPGA: Recv ZSGSRD 35351
17-03-18 06:26:28.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:28.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:28.404 -07 000000608 INF: FPGA: Recv ZSGSRD 35348
17-03-18 06:26:28.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:28.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:28.414 -07 000000579 INF: FPGA: Recv ZPIEZORD 31067
17-03-18 06:26:28.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:26:28.424 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.581 V. Piezo Error = -9.4 V.
17-03-18 06:26:28.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35351 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35351 (-166.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35347 (-166.5 uncal um), Max = 35354 (-166.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:26:28.424 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35351, posNoise = 3, negNoise = 4
17-03-18 06:26:28.424 -07 000000610 INF: Z Motor: After move to -0.167425, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:28.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:26:28.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:28.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:28.424 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:28.424 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:28.424 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:26:28.424 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:28.424 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:26:28.424 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:26:28.424 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:26:28.424 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:26:28.424 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:26:28.424 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:26:28.434 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:26:28.434 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:26:28.434 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:26:28.434 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:26:28.434 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:26:28.434 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:26:28.444 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:26:28.444 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:26:28.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36751 150\n [Camera]
17-03-18 06:26:28.644 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 06:26:29.104 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:26:29.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:26:29.104 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:29.104 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:26:29.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:26:29.104 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:29.104 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:26:29.104 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:29.114 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:29.114 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:26:29.294 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36751 844
17-03-18 06:26:29.444 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:26:29.484 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:26:29.484 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:26:29.484 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:29.494 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:29.494 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:26:29.494 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:26:29.494 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:26:29.494 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:29.494 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:29.504 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:26:29.664 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:29.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:29.664 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:29.664 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:29.664 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:29.664 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:26:29.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:29.664 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:29.664 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:29.664 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:26:29.714 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.020806,
17-03-18 06:26:29.854 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:26:29.854 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:29.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36751 150' command took 2 ms to send, 1407 ms to get response, and 1415 ms overall
17-03-18 06:26:29.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:26:29.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86181640625, Z-Position -0.167425675434527. ------
17-03-18 06:26:29.974 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:29.974 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17377 mm
17-03-18 06:26:29.974 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:29.974 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:29.974 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 37959, sync = True, waitForSettling = False)
17-03-18 06:26:29.984 -07 000000579 INF: Z Motor: Moving to -0.173765 mm, started at -0.167426 mm, distance = -6.34 um
17-03-18 06:26:29.984 -07 000000579 INF: FPGA: Xmit ZDACW 37959\n [Z Motor]
17-03-18 06:26:29.984 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:26:29.984 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:26:29.984 -07 000000455 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-18 06:26:29.984 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:26:29.994 -07 000000579 INF: FPGA: 'ZDACW 37959' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:29.994 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:29.994 -07 000000474 INF: FPGA: Recv ZDACR 37959
17-03-18 06:26:30.004 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:30.004 -07 000000579 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 06:26:30.004 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:30.014 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:30.014 -07 000000447 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:26:30.024 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 06:26:30.024 -07 000000455 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:30.024 -07 000000455 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:26:30.024 -07 000000455 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:26:30.044 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:26:30.064 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:26:30.064 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:26:30.064 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:30.064 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:26:30.064 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:26:30.064 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:30.064 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:30.064 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:26:30.064 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:30.074 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:26:30.204 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:30.204 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:26:30.414 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:26:30.414 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 06:26:30.474 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:30.474 -07 000000382 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:26:30.484 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:30.484 -07 000000455 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:30.484 -07 000000455 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:26:30.484 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.841 mm, average velocity = 2.150 mm/sec
17-03-18 06:26:31.434 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:31.434 -07 000000438 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:26:31.444 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:31.444 -07 000000455 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:31.474 -07 000000455 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:26:31.474 -07 000000455 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:26:31.474 -07 000000455 INF: Y Motor: Moved to 70.6875 after 1491 ms (table move)
17-03-18 06:26:31.474 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173765 mm (DAC = 37959)
17-03-18 06:26:31.474 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:31.484 -07 000000455 INF: FPGA: Recv ZSGSRD 36347
17-03-18 06:26:31.484 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:26:31.484 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:31.484 -07 000000569 INF: FPGA: Recv ZSGSRD 36341
17-03-18 06:26:31.494 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:31.494 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:31.494 -07 000000462 INF: FPGA: Recv ZSGSRD 36339
17-03-18 06:26:31.504 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:31.504 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:31.504 -07 000000467 INF: FPGA: Recv ZSGSRD 36332
17-03-18 06:26:31.514 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:31.514 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:31.514 -07 000000591 INF: FPGA: Recv ZSGSRD 36335
17-03-18 06:26:31.524 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:31.524 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:31.524 -07 000000438 INF: FPGA: Recv ZSGSRD 36344
17-03-18 06:26:31.534 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:31.534 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:31.534 -07 000000569 INF: FPGA: Recv ZSGSRD 36347
17-03-18 06:26:31.544 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:31.544 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:31.544 -07 000000467 INF: FPGA: Recv ZSGSRD 36341
17-03-18 06:26:31.554 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:31.554 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:31.554 -07 000000591 INF: FPGA: Recv ZSGSRD 36339
17-03-18 06:26:31.564 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:31.564 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:31.564 -07 000000447 INF: FPGA: Recv ZSGSRD 36336
17-03-18 06:26:31.574 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:31.574 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:31.574 -07 000000501 INF: FPGA: Recv ZPIEZORD 32401
17-03-18 06:26:31.584 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:31.584 -07 000000608 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.792 V. Piezo Error = -8.7 V.
17-03-18 06:26:31.584 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36340 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36340 (-172.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36332 (-172.8 uncal um), Max = 36347 (-172.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:26:31.584 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36340, posNoise = 7, negNoise = 8
17-03-18 06:26:31.584 -07 000000608 INF: Z Motor: After move to -0.173765, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:31.584 -07 000000608 INF: Z Motor: Settle wait time = 1497 ms, measure time = 103 ms (allowed 150 ms), total time = 1600 ms
17-03-18 06:26:31.584 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:26:31.634 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1653 ms
17-03-18 06:26:31.634 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:26:31.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:31.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:31.634 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:31.634 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:26:31.634 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:31.634 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:31.634 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:26:31.634 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:26:31.644 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:26:31.644 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:26:31.644 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:26:31.644 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:26:31.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:26:31.694 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:26:31.864 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:26:31.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:26:31.994 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:26:31.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:26:31.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:26:31.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:26:32.034 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:26:32.034 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 06:26:32.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:26:32.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 06:26:32.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:32.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:26:32.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 06:26:32.134 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:32.134 -07 000000438 INF: Autofocus start
17-03-18 06:26:32.134 -07 000000438 INF: MeasureProfile start
17-03-18 06:26:32.144 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:32.144 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 06:26:32.144 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:26:32.144 -07 000000438 INF: MeasureProfile done
17-03-18 06:26:32.144 -07 000000438 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:26:32.144 -07 000000438 INF: Autofocus finished
17-03-18 06:26:32.344 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:26:32.344 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:26:32.354 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.173779221242728. ----------
17-03-18 06:26:32.354 -07 000000610 INF: Cycle	149	Tile	14	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:26:32.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36492, sync = True, waitForSettling = True)
17-03-18 06:26:32.354 -07 000000610 INF: Z Motor: Moving to -0.167050 mm, started at -0.173779 mm, distance = 6.73 um
17-03-18 06:26:32.354 -07 000000610 INF: FPGA: Xmit ZDACW 36492\n [Z Motor]
17-03-18 06:26:32.354 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:26:32.364 -07 000000610 INF: FPGA: 'ZDACW 36492' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:26:32.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:32.364 -07 000000474 INF: FPGA: Recv ZDACR 36492
17-03-18 06:26:32.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:32.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:26:32.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:32.524 -07 000000569 INF: FPGA: Recv ZSGSRD 35292
17-03-18 06:26:32.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:32.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:32.534 -07 000000467 INF: FPGA: Recv ZSGSRD 35290
17-03-18 06:26:32.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:32.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:32.544 -07 000000382 INF: FPGA: Recv ZSGSRD 35295
17-03-18 06:26:32.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:32.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:32.554 -07 000000479 INF: FPGA: Recv ZSGSRD 35292
17-03-18 06:26:32.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:32.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:32.564 -07 000000462 INF: FPGA: Recv ZSGSRD 35297
17-03-18 06:26:32.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:32.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:32.574 -07 000000611 INF: FPGA: Recv ZSGSRD 35297
17-03-18 06:26:32.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:32.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:32.584 -07 000000501 INF: FPGA: Recv ZSGSRD 35292
17-03-18 06:26:32.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:32.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:32.594 -07 000000479 INF: FPGA: Recv ZSGSRD 35292
17-03-18 06:26:32.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:32.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:32.604 -07 000000462 INF: FPGA: Recv ZSGSRD 35294
17-03-18 06:26:32.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:32.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:32.614 -07 000000461 INF: FPGA: Recv ZSGSRD 35297
17-03-18 06:26:32.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:32.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:32.624 -07 000000382 INF: FPGA: Recv ZPIEZORD 30947
17-03-18 06:26:32.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:32.634 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.568 V. Piezo Error = -9.6 V.
17-03-18 06:26:32.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35294 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35293 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35290 (-166.2 uncal um), Max = 35297 (-166.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:26:32.634 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35294, posNoise = 3, negNoise = 4
17-03-18 06:26:32.634 -07 000000610 INF: Z Motor: After move to -0.167050, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:32.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:26:32.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:32.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:32.634 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:26:32.634 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:26:32.634 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:32.634 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:32.634 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:26:32.634 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:32.634 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:26:32.634 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:26:32.634 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:26:32.634 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:26:32.644 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:26:32.644 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:26:32.644 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:26:32.644 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:26:32.654 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:26:32.654 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:26:32.654 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:26:32.654 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:26:32.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36669 150\n [Camera]
17-03-18 06:26:32.854 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:26:33.314 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:26:33.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:26:33.314 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:33.314 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:26:33.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:26:33.314 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:33.324 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:33.324 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:26:33.324 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:33.324 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:26:33.514 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36669 847
17-03-18 06:26:33.654 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:26:33.724 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:26:33.724 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:26:33.724 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:33.724 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:26:33.724 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:26:33.724 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:33.724 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:33.724 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:33.724 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:26:33.734 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:26:33.874 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:33.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:33.884 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:33.884 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:33.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:33.884 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:33.894 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:33.894 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:26:33.894 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:33.894 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:26:34.074 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:26:34.074 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:34.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36669 150' command took 2 ms to send, 1411 ms to get response, and 1415 ms overall
17-03-18 06:26:34.074 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:26:34.074 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.167059495342446. ------
17-03-18 06:26:34.074 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:34.074 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17382 mm
17-03-18 06:26:34.074 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:34.074 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:34.084 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:26:34.084 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:34.084 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37971, sync = True, waitForSettling = False)
17-03-18 06:26:34.084 -07 000000455 INF: Z Motor: Moving to -0.173820 mm, started at -0.167059 mm, distance = -6.76 um
17-03-18 06:26:34.084 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:26:34.084 -07 000000461 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 06:26:34.094 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:34.094 -07 000000447 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:26:34.104 -07 000000455 INF: FPGA: Xmit ZDACW 37971\n [Z Motor]
17-03-18 06:26:34.104 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:26:34.104 -07 000000461 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:34.104 -07 000000461 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:26:34.104 -07 000000461 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:26:34.104 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:26:34.114 -07 000000455 INF: FPGA: 'ZDACW 37971' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:26:34.114 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:34.114 -07 000000479 INF: FPGA: Recv ZDACR 37971
17-03-18 06:26:34.124 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:34.124 -07 000000455 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 06:26:34.124 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:26:34.284 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:34.284 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:26:34.294 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:26:34.294 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:26:34.294 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:34.294 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:26:34.294 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:26:34.294 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:34.294 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:34.294 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 06:26:34.294 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:34.304 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 06:26:34.494 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:26:34.494 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:26:34.544 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:34.554 -07 000000455 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:26:34.554 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:26:34.554 -07 000000461 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:34.554 -07 000000461 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:26:34.554 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 06:26:35.084 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.015368,
17-03-18 06:26:35.504 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:35.504 -07 000000591 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:26:35.514 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:35.514 -07 000000461 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:35.544 -07 000000461 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:26:35.544 -07 000000461 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:26:35.544 -07 000000461 INF: Y Motor: Moved to 71.5176 after 1461 ms (table move)
17-03-18 06:26:35.544 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173820 mm (DAC = 37971)
17-03-18 06:26:35.544 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:35.544 -07 000000608 INF: FPGA: Recv ZSGSRD 36351
17-03-18 06:26:35.554 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:26:35.554 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:35.554 -07 000000569 INF: FPGA: Recv ZSGSRD 36350
17-03-18 06:26:35.564 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:35.564 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:35.564 -07 000000479 INF: FPGA: Recv ZSGSRD 36346
17-03-18 06:26:35.574 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:35.574 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:35.574 -07 000000447 INF: FPGA: Recv ZSGSRD 36342
17-03-18 06:26:35.584 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:35.584 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:35.584 -07 000000467 INF: FPGA: Recv ZSGSRD 36343
17-03-18 06:26:35.594 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:35.594 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:35.594 -07 000000462 INF: FPGA: Recv ZSGSRD 36348
17-03-18 06:26:35.604 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:26:35.604 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:35.604 -07 000000467 INF: FPGA: Recv ZSGSRD 36347
17-03-18 06:26:35.614 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:35.614 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:35.614 -07 000000608 INF: FPGA: Recv ZSGSRD 36344
17-03-18 06:26:35.624 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:35.624 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:35.624 -07 000000382 INF: FPGA: Recv ZSGSRD 36348
17-03-18 06:26:35.634 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:35.634 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:35.634 -07 000000501 INF: FPGA: Recv ZSGSRD 36348
17-03-18 06:26:35.644 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:35.644 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:35.644 -07 000000591 INF: FPGA: Recv ZPIEZORD 32404
17-03-18 06:26:35.654 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:35.654 -07 000000438 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.794 V. Piezo Error = -8.7 V.
17-03-18 06:26:35.654 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36347 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36348 (-172.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36342 (-172.9 uncal um), Max = 36351 (-173.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:26:35.654 -07 000000438 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36347, posNoise = 4, negNoise = 5
17-03-18 06:26:35.654 -07 000000438 INF: Z Motor: After move to -0.173820, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:35.654 -07 000000438 INF: Z Motor: Settle wait time = 1465 ms, measure time = 105 ms (allowed 150 ms), total time = 1570 ms
17-03-18 06:26:35.654 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:26:35.704 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 06:26:35.704 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:26:35.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:35.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:35.704 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:35.704 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:35.704 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:26:35.704 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:35.704 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:26:35.704 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:26:35.714 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:26:35.714 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:26:35.714 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:26:35.714 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:26:35.724 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:26:35.764 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:26:36.064 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:26:36.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:26:36.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:26:36.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 06:26:36.104 -07 000000569 INF: FPGA: Recv @CAMSNAP 384
17-03-18 06:26:36.114 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 06:26:36.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 388 ms overall
17-03-18 06:26:36.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:26:36.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:36.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:26:36.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:26:36.214 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:36.214 -07 000000629 INF: Autofocus start
17-03-18 06:26:36.214 -07 000000629 INF: MeasureProfile start
17-03-18 06:26:36.214 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:36.224 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:26:36.224 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:26:36.234 -07 000000629 INF: MeasureProfile done
17-03-18 06:26:36.234 -07 000000629 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:26:36.234 -07 000000629 INF: Autofocus finished
17-03-18 06:26:36.424 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:26:36.424 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:26:36.424 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.17382419072772. ----------
17-03-18 06:26:36.424 -07 000000610 INF: Cycle	149	Tile	15	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:26:36.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36468, sync = True, waitForSettling = True)
17-03-18 06:26:36.434 -07 000000610 INF: Z Motor: Moving to -0.166940 mm, started at -0.173824 mm, distance = 6.88 um
17-03-18 06:26:36.434 -07 000000610 INF: FPGA: Xmit ZDACW 36468\n [Z Motor]
17-03-18 06:26:36.434 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:26:36.444 -07 000000610 INF: FPGA: 'ZDACW 36468' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:36.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:36.444 -07 000000382 INF: FPGA: Recv ZDACR 36468
17-03-18 06:26:36.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:36.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:26:36.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:36.604 -07 000000591 INF: FPGA: Recv ZSGSRD 35274
17-03-18 06:26:36.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:36.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:36.614 -07 000000479 INF: FPGA: Recv ZSGSRD 35279
17-03-18 06:26:36.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:36.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:36.624 -07 000000608 INF: FPGA: Recv ZSGSRD 35278
17-03-18 06:26:36.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:36.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:36.634 -07 000000461 INF: FPGA: Recv ZSGSRD 35272
17-03-18 06:26:36.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:36.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:36.644 -07 000000591 INF: FPGA: Recv ZSGSRD 35277
17-03-18 06:26:36.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:36.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:36.654 -07 000000479 INF: FPGA: Recv ZSGSRD 35279
17-03-18 06:26:36.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:36.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:36.664 -07 000000474 INF: FPGA: Recv ZSGSRD 35277
17-03-18 06:26:36.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:36.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:36.674 -07 000000467 INF: FPGA: Recv ZSGSRD 35282
17-03-18 06:26:36.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:36.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:36.684 -07 000000438 INF: FPGA: Recv ZSGSRD 35281
17-03-18 06:26:36.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:36.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:36.694 -07 000000479 INF: FPGA: Recv ZSGSRD 35277
17-03-18 06:26:36.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:36.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:36.704 -07 000000579 INF: FPGA: Recv ZPIEZORD 30957
17-03-18 06:26:36.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:36.714 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.565 V. Piezo Error = -9.5 V.
17-03-18 06:26:36.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35278 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35278 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35272 (-166.1 uncal um), Max = 35282 (-166.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:26:36.714 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35278, posNoise = 4, negNoise = 6
17-03-18 06:26:36.714 -07 000000610 INF: Z Motor: After move to -0.166940, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:36.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:26:36.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:36.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:36.714 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:36.714 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:26:36.714 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:36.714 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:36.714 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:26:36.714 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:26:36.714 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:26:36.714 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:26:36.714 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:26:36.714 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:26:36.724 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:26:36.724 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:26:36.724 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:26:36.724 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:26:36.734 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:26:36.734 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:26:36.734 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:26:36.734 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:26:36.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36645 150\n [Camera]
17-03-18 06:26:36.864 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:26:36.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:26:36.934 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:26:37.394 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:26:37.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:26:37.394 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:37.394 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:37.394 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:26:37.394 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:26:37.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:26:37.394 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:37.394 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:37.394 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:26:37.584 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36645 844
17-03-18 06:26:37.734 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:26:37.774 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:26:37.774 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:26:37.774 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:37.774 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:26:37.774 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:26:37.774 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:37.774 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:37.784 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:37.784 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:26:37.784 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:26:37.954 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:37.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:37.954 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:37.954 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:37.954 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:37.954 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:26:37.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:37.964 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:37.964 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:37.964 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 06:26:38.144 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-18 06:26:38.144 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:38.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36645 150' command took 2 ms to send, 1408 ms to get response, and 1415 ms overall
17-03-18 06:26:38.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:26:38.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.166956707948178. ------
17-03-18 06:26:38.154 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:38.154 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17316 mm
17-03-18 06:26:38.154 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:38.154 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:26:38.154 -07 000000629 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 06:26:38.154 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37827, sync = True, waitForSettling = False)
17-03-18 06:26:38.154 -07 000000382 INF: Z Motor: Moving to -0.173161 mm, started at -0.166957 mm, distance = -6.20 um
17-03-18 06:26:38.154 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:38.164 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:26:38.164 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:38.164 -07 000000462 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:26:38.174 -07 000000382 INF: FPGA: Xmit ZDACW 37827\n [Z Motor]
17-03-18 06:26:38.174 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:26:38.174 -07 000000629 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:38.304 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:38.304 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:26:38.304 -07 000000382 INF: FPGA: 'ZDACW 37827' command took 0 ms to send, 0 ms to get response, and 145 ms overall
17-03-18 06:26:38.304 -07 000000629 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:26:38.304 -07 000000629 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:26:38.314 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:38.314 -07 000000579 INF: FPGA: Recv ZDACR 37827
17-03-18 06:26:38.324 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:26:38.324 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:26:38.324 -07 000000382 INF: Z Motor: MoveAbsStepped took 163 ms (did NOT wait for settling yet))
17-03-18 06:26:38.364 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 06:26:38.364 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:26:38.364 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:38.364 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 06:26:38.364 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:26:38.364 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:38.374 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:38.374 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:26:38.374 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 06:26:38.374 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:26:38.504 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:38.504 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 345 ms overall
17-03-18 06:26:38.694 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:26:38.694 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 06:26:38.754 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:38.754 -07 000000438 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:26:38.764 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:38.764 -07 000000629 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:38.764 -07 000000629 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:26:38.764 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.845 mm, average velocity = 2.167 mm/sec
17-03-18 06:26:39.714 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:39.714 -07 000000579 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:26:39.724 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:39.724 -07 000000629 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:39.754 -07 000000629 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:26:39.754 -07 000000629 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:26:39.754 -07 000000629 INF: Y Motor: Moved to 72.3486 after 1596 ms (table move)
17-03-18 06:26:39.754 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173161 mm (DAC = 37827)
17-03-18 06:26:39.754 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:39.754 -07 000000382 INF: FPGA: Recv ZSGSRD 36248
17-03-18 06:26:39.764 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:26:39.764 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:39.764 -07 000000455 INF: FPGA: Recv ZSGSRD 36243
17-03-18 06:26:39.774 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:39.774 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:39.774 -07 000000474 INF: FPGA: Recv ZSGSRD 36238
17-03-18 06:26:39.784 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:39.784 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:39.784 -07 000000585 INF: FPGA: Recv ZSGSRD 36246
17-03-18 06:26:39.794 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:39.794 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:39.794 -07 000000579 INF: FPGA: Recv ZSGSRD 36247
17-03-18 06:26:39.804 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:39.804 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:39.804 -07 000000437 INF: FPGA: Recv ZSGSRD 36243
17-03-18 06:26:39.814 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:39.814 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:39.814 -07 000000461 INF: FPGA: Recv ZSGSRD 36253
17-03-18 06:26:39.824 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:39.824 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:39.824 -07 000000501 INF: FPGA: Recv ZSGSRD 36245
17-03-18 06:26:39.834 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:39.834 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:39.834 -07 000000502 INF: FPGA: Recv ZSGSRD 36244
17-03-18 06:26:39.844 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:39.844 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:39.844 -07 000000629 INF: FPGA: Recv ZSGSRD 36251
17-03-18 06:26:39.854 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:39.854 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:39.854 -07 000000467 INF: FPGA: Recv ZPIEZORD 32268
17-03-18 06:26:39.864 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:39.864 -07 000000608 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.772 V. Piezo Error = -8.8 V.
17-03-18 06:26:39.864 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36246 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36246 (-172.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36238 (-172.2 uncal um), Max = 36253 (-172.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:26:39.864 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36246, posNoise = 7, negNoise = 8
17-03-18 06:26:39.864 -07 000000608 INF: Z Motor: After move to -0.173161, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:39.864 -07 000000608 INF: Z Motor: Settle wait time = 1599 ms, measure time = 104 ms (allowed 150 ms), total time = 1703 ms
17-03-18 06:26:39.864 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:26:39.914 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1755 ms
17-03-18 06:26:39.914 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:26:39.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:39.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:39.914 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:39.914 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:39.914 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:26:39.914 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:39.914 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:26:39.924 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:26:39.924 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:26:39.924 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:26:39.924 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:26:39.924 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:26:39.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:26:39.974 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:26:40.274 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:26:40.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:26:40.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:26:40.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:26:40.314 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:26:40.314 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 06:26:40.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 06:26:40.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:26:40.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:40.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:26:40.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:26:40.424 -07 000000438 INF: Autofocus start
17-03-18 06:26:40.424 -07 000000438 INF: MeasureProfile start
17-03-18 06:26:40.424 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:40.424 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:40.434 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:26:40.434 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:26:40.434 -07 000000438 INF: MeasureProfile done
17-03-18 06:26:40.434 -07 000000438 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:26:40.434 -07 000000438 INF: Autofocus finished
17-03-18 06:26:40.454 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.020806,
17-03-18 06:26:40.634 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:26:40.634 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:26:40.634 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.173175345301403. ----------
17-03-18 06:26:40.634 -07 000000610 INF: Cycle	149	Tile	16	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:26:40.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36378, sync = True, waitForSettling = True)
17-03-18 06:26:40.644 -07 000000610 INF: Z Motor: Moving to -0.166528 mm, started at -0.173175 mm, distance = 6.65 um
17-03-18 06:26:40.644 -07 000000610 INF: FPGA: Xmit ZDACW 36378\n [Z Motor]
17-03-18 06:26:40.644 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:26:40.654 -07 000000610 INF: FPGA: 'ZDACW 36378' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:40.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:40.654 -07 000000502 INF: FPGA: Recv ZDACR 36378
17-03-18 06:26:40.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:40.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:26:40.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:40.814 -07 000000462 INF: FPGA: Recv ZSGSRD 35217
17-03-18 06:26:40.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:40.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:40.824 -07 000000382 INF: FPGA: Recv ZSGSRD 35213
17-03-18 06:26:40.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:40.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:40.834 -07 000000479 INF: FPGA: Recv ZSGSRD 35212
17-03-18 06:26:40.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:40.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:40.844 -07 000000569 INF: FPGA: Recv ZSGSRD 35207
17-03-18 06:26:40.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:40.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:40.854 -07 000000591 INF: FPGA: Recv ZSGSRD 35221
17-03-18 06:26:40.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:26:40.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:40.864 -07 000000447 INF: FPGA: Recv ZSGSRD 35219
17-03-18 06:26:40.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:40.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:40.874 -07 000000569 INF: FPGA: Recv ZSGSRD 35209
17-03-18 06:26:40.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:40.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:40.884 -07 000000611 INF: FPGA: Recv ZSGSRD 35212
17-03-18 06:26:40.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:40.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:40.894 -07 000000608 INF: FPGA: Recv ZSGSRD 35212
17-03-18 06:26:40.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:40.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:40.904 -07 000000480 INF: FPGA: Recv ZSGSRD 35212
17-03-18 06:26:40.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:40.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:40.914 -07 000000382 INF: FPGA: Recv ZPIEZORD 30906
17-03-18 06:26:40.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:40.924 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.551 V. Piezo Error = -9.5 V.
17-03-18 06:26:40.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35213 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35212 (-165.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35207 (-165.6 uncal um), Max = 35221 (-165.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:26:40.924 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35213, posNoise = 8, negNoise = 6
17-03-18 06:26:40.924 -07 000000610 INF: Z Motor: After move to -0.166528, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:40.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:26:40.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:40.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:40.924 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:40.924 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:40.924 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:26:40.924 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:40.924 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:26:40.924 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:26:40.924 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:26:40.924 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:26:40.924 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:26:40.924 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:26:40.934 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:26:40.934 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:26:40.934 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:26:40.934 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:26:40.934 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:26:40.934 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:26:40.944 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:26:40.944 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:26:40.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36555 150\n [Camera]
17-03-18 06:26:41.144 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:26:41.604 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:26:41.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:26:41.604 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:41.614 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:41.614 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:26:41.614 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:26:41.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:26:41.614 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:41.614 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:41.614 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:26:41.794 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36555 844
17-03-18 06:26:41.864 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:26:41.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:26:41.944 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:26:41.994 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:26:41.994 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:26:41.994 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:41.994 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:26:41.994 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:26:41.994 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:42.004 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:42.004 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:26:42.004 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:42.004 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:26:42.164 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:42.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:42.174 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:42.174 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:42.174 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:42.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:42.174 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 06:26:42.174 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:42.174 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:42.174 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:26:42.364 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:26:42.474 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:42.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36555 150' command took 2 ms to send, 1524 ms to get response, and 1528 ms overall
17-03-18 06:26:42.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:26:42.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.166539134158964. ------
17-03-18 06:26:42.474 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:42.474 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17311 mm
17-03-18 06:26:42.474 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:42.484 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:26:42.484 -07 000000474 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 06:26:42.484 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:42.484 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:26:42.484 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:42.484 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37817, sync = True, waitForSettling = False)
17-03-18 06:26:42.484 -07 000000608 INF: Z Motor: Moving to -0.173115 mm, started at -0.166539 mm, distance = -6.58 um
17-03-18 06:26:42.484 -07 000000382 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:26:42.494 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:42.494 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:26:42.494 -07 000000474 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:42.494 -07 000000474 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:26:42.494 -07 000000474 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:26:42.504 -07 000000608 INF: FPGA: Xmit ZDACW 37817\n [Z Motor]
17-03-18 06:26:42.504 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:26:42.514 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:26:42.514 -07 000000608 INF: FPGA: 'ZDACW 37817' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:26:42.524 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:42.524 -07 000000585 INF: FPGA: Recv ZDACR 37817
17-03-18 06:26:42.534 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:26:42.534 -07 000000608 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 06:26:42.574 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:26:42.574 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:26:42.574 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:42.574 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:26:42.574 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:26:42.574 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:42.574 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:42.574 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:42.574 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:26:42.584 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:26:42.694 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:42.694 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-18 06:26:42.884 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:26:42.884 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:26:42.944 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:42.944 -07 000000461 INF: FPGA: Recv YRDPOS 149861
17-03-18 06:26:42.954 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:42.954 -07 000000474 INF: Y Motor: Encoder = 149861 = motor step 117078.9 = 73.1743 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:42.954 -07 000000474 INF: Y Motor: Position error before settling (table move) = -37 encoder counts (-0.018 mm)
17-03-18 06:26:42.954 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 06:26:43.904 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:43.904 -07 000000438 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:26:43.914 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:43.914 -07 000000474 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:43.944 -07 000000474 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:26:43.944 -07 000000474 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:26:43.944 -07 000000474 INF: Y Motor: Moved to 73.1748 after 1460 ms (table move)
17-03-18 06:26:43.944 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173115 mm (DAC = 37817)
17-03-18 06:26:43.944 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:43.954 -07 000000437 INF: FPGA: Recv ZSGSRD 36241
17-03-18 06:26:43.954 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:26:43.954 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:43.954 -07 000000462 INF: FPGA: Recv ZSGSRD 36239
17-03-18 06:26:43.964 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:26:43.964 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:43.964 -07 000000608 INF: FPGA: Recv ZSGSRD 36238
17-03-18 06:26:43.974 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:43.974 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:43.974 -07 000000479 INF: FPGA: Recv ZSGSRD 36238
17-03-18 06:26:43.984 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:43.984 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:43.984 -07 000000629 INF: FPGA: Recv ZSGSRD 36237
17-03-18 06:26:43.994 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:43.994 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:43.994 -07 000000569 INF: FPGA: Recv ZSGSRD 36238
17-03-18 06:26:44.004 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:44.004 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:44.004 -07 000000592 INF: FPGA: Recv ZSGSRD 36238
17-03-18 06:26:44.014 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:44.014 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:44.014 -07 000000611 INF: FPGA: Recv ZSGSRD 36240
17-03-18 06:26:44.024 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:44.024 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:44.024 -07 000000461 INF: FPGA: Recv ZSGSRD 36236
17-03-18 06:26:44.034 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:44.034 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:44.034 -07 000000438 INF: FPGA: Recv ZSGSRD 36233
17-03-18 06:26:44.044 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:44.044 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:44.044 -07 000000480 INF: FPGA: Recv ZPIEZORD 32295
17-03-18 06:26:44.054 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:44.054 -07 000000591 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.771 V. Piezo Error = -8.7 V.
17-03-18 06:26:44.054 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36238 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36238 (-172.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36233 (-172.2 uncal um), Max = 36241 (-172.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:26:44.054 -07 000000591 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36238, posNoise = 3, negNoise = 5
17-03-18 06:26:44.054 -07 000000591 INF: Z Motor: After move to -0.173115, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:44.054 -07 000000591 INF: Z Motor: Settle wait time = 1464 ms, measure time = 103 ms (allowed 150 ms), total time = 1567 ms
17-03-18 06:26:44.054 -07 000000591 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:26:44.104 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 06:26:44.104 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:26:44.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:44.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:44.104 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:44.104 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:44.104 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:26:44.104 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:44.114 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:26:44.114 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:26:44.114 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:26:44.114 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:26:44.124 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:26:44.124 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:26:44.124 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:26:44.164 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:26:44.464 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:26:44.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:26:44.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:26:44.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:26:44.504 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:26:44.504 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 06:26:44.504 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:26:44.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 06:26:44.584 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:44.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:26:44.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:26:44.604 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:44.604 -07 000000608 INF: Autofocus start
17-03-18 06:26:44.604 -07 000000608 INF: MeasureProfile start
17-03-18 06:26:44.614 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:44.614 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 06:26:44.614 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:26:44.614 -07 000000608 INF: MeasureProfile done
17-03-18 06:26:44.614 -07 000000608 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 06:26:44.614 -07 000000608 INF: Autofocus finished
17-03-18 06:26:44.814 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:26:44.814 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 06:26:44.844 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.173123951604269. ----------
17-03-18 06:26:44.844 -07 000000610 INF: Cycle	149	Tile	17	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:26:44.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36297, sync = True, waitForSettling = True)
17-03-18 06:26:44.844 -07 000000610 INF: Z Motor: Moving to -0.166157 mm, started at -0.173124 mm, distance = 6.97 um
17-03-18 06:26:44.844 -07 000000610 INF: FPGA: Xmit ZDACW 36297\n [Z Motor]
17-03-18 06:26:44.844 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:26:44.854 -07 000000610 INF: FPGA: 'ZDACW 36297' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:26:44.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:44.854 -07 000000501 INF: FPGA: Recv ZDACR 36297
17-03-18 06:26:44.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:44.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:26:45.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:45.014 -07 000000455 INF: FPGA: Recv ZSGSRD 35154
17-03-18 06:26:45.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:45.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:45.024 -07 000000474 INF: FPGA: Recv ZSGSRD 35156
17-03-18 06:26:45.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:45.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:45.034 -07 000000461 INF: FPGA: Recv ZSGSRD 35154
17-03-18 06:26:45.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:45.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:45.044 -07 000000480 INF: FPGA: Recv ZSGSRD 35147
17-03-18 06:26:45.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:45.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:45.054 -07 000000437 INF: FPGA: Recv ZSGSRD 35158
17-03-18 06:26:45.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:45.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:45.064 -07 000000455 INF: FPGA: Recv ZSGSRD 35158
17-03-18 06:26:45.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:45.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:45.074 -07 000000462 INF: FPGA: Recv ZSGSRD 35156
17-03-18 06:26:45.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:45.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:45.084 -07 000000461 INF: FPGA: Recv ZSGSRD 35154
17-03-18 06:26:45.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:45.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:45.094 -07 000000585 INF: FPGA: Recv ZSGSRD 35157
17-03-18 06:26:45.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:45.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:45.104 -07 000000438 INF: FPGA: Recv ZSGSRD 35152
17-03-18 06:26:45.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:45.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:45.114 -07 000000447 INF: FPGA: Recv ZPIEZORD 30856
17-03-18 06:26:45.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:45.124 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.5 V.
17-03-18 06:26:45.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35155 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35155 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35147 (-165.2 uncal um), Max = 35158 (-165.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:26:45.124 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35155, posNoise = 3, negNoise = 8
17-03-18 06:26:45.124 -07 000000610 INF: Z Motor: After move to -0.166157, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:45.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:26:45.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:45.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:45.124 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:45.124 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:45.124 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:26:45.124 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:45.124 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:26:45.124 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:26:45.124 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:26:45.124 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:26:45.124 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:26:45.124 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:26:45.134 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:26:45.134 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:26:45.134 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:26:45.134 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:26:45.134 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:26:45.134 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:26:45.144 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:26:45.144 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:26:45.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36473 150\n [Camera]
17-03-18 06:26:45.344 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 06:26:45.804 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:26:45.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:26:45.804 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:45.804 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:26:45.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:26:45.804 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:45.804 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:45.804 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:26:45.814 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:45.814 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:26:45.824 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.009895,
17-03-18 06:26:45.994 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36473 844
17-03-18 06:26:46.144 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 995
17-03-18 06:26:46.194 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:26:46.194 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:26:46.194 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:46.194 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:46.204 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:26:46.204 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:26:46.204 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:46.204 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:46.204 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:26:46.204 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:26:46.364 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:46.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:46.364 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:46.364 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:46.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:46.374 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:46.374 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:46.374 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:26:46.384 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:46.384 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 06:26:46.554 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:26:46.554 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:46.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36473 150' command took 2 ms to send, 1408 ms to get response, and 1415 ms overall
17-03-18 06:26:46.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:26:46.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166166529854741. ------
17-03-18 06:26:46.564 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:46.564 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17208 mm
17-03-18 06:26:46.564 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:46.564 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:26:46.564 -07 000000438 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 06:26:46.564 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:46.574 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:26:46.574 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:46.574 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37591, sync = True, waitForSettling = False)
17-03-18 06:26:46.574 -07 000000608 INF: Z Motor: Moving to -0.172081 mm, started at -0.166167 mm, distance = -5.91 um
17-03-18 06:26:46.574 -07 000000467 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:26:46.584 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:46.584 -07 000000438 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:46.584 -07 000000438 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:26:46.584 -07 000000438 INF: Y Motor: Moving 1356 steps-37
17-03-18 06:26:46.584 -07 000000608 INF: FPGA: Xmit ZDACW 37591\n [Z Motor]
17-03-18 06:26:46.584 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:26:46.594 -07 000000608 INF: FPGA: 'ZDACW 37591' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:26:46.594 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:46.604 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:26:46.614 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:46.614 -07 000000611 INF: FPGA: Recv ZDACR 37591
17-03-18 06:26:46.624 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:26:46.624 -07 000000608 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 06:26:46.774 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:26:46.774 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:26:46.774 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:46.774 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:26:46.774 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:26:46.774 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:46.784 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:46.784 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 06:26:46.784 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:46.784 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:26:46.794 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:46.794 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:26:46.864 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:26:46.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:26:46.974 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:26:46.974 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:26:47.024 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:47.024 -07 000000501 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:26:47.034 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:47.034 -07 000000438 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:47.034 -07 000000438 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:26:47.034 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.848 mm, average velocity = 2.136 mm/sec
17-03-18 06:26:47.984 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:47.984 -07 000000585 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:26:47.994 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:47.994 -07 000000438 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:48.014 -07 000000438 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:26:48.014 -07 000000438 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:26:48.014 -07 000000438 INF: Y Motor: Moved to 74.0068 after 1447 ms (table move)
17-03-18 06:26:48.024 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172081 mm (DAC = 37591)
17-03-18 06:26:48.024 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:48.024 -07 000000569 INF: FPGA: Recv ZSGSRD 36080
17-03-18 06:26:48.034 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:48.034 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:48.034 -07 000000629 INF: FPGA: Recv ZSGSRD 36078
17-03-18 06:26:48.044 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:48.044 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:48.044 -07 000000461 INF: FPGA: Recv ZSGSRD 36080
17-03-18 06:26:48.054 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:48.054 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:48.054 -07 000000437 INF: FPGA: Recv ZSGSRD 36077
17-03-18 06:26:48.064 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:48.064 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:48.064 -07 000000462 INF: FPGA: Recv ZSGSRD 36070
17-03-18 06:26:48.074 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:48.074 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:48.074 -07 000000474 INF: FPGA: Recv ZSGSRD 36074
17-03-18 06:26:48.084 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:48.084 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:48.084 -07 000000501 INF: FPGA: Recv ZSGSRD 36083
17-03-18 06:26:48.094 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:48.094 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:48.094 -07 000000592 INF: FPGA: Recv ZSGSRD 36075
17-03-18 06:26:48.104 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:48.104 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:48.104 -07 000000474 INF: FPGA: Recv ZSGSRD 36083
17-03-18 06:26:48.114 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:48.114 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:48.114 -07 000000579 INF: FPGA: Recv ZSGSRD 36074
17-03-18 06:26:48.124 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:48.124 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:48.124 -07 000000438 INF: FPGA: Recv ZPIEZORD 32093
17-03-18 06:26:48.134 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:48.134 -07 000000591 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.736 V. Piezo Error = -8.8 V.
17-03-18 06:26:48.134 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36077 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36078 (-171.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36070 (-171.2 uncal um), Max = 36083 (-171.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:26:48.134 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36077, posNoise = 6, negNoise = 7
17-03-18 06:26:48.134 -07 000000591 INF: Z Motor: After move to -0.172081, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:48.134 -07 000000591 INF: Z Motor: Settle wait time = 1448 ms, measure time = 111 ms (allowed 150 ms), total time = 1559 ms
17-03-18 06:26:48.134 -07 000000591 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:26:48.174 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 06:26:48.174 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:26:48.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:48.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:48.174 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:48.174 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:48.174 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:26:48.174 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:48.174 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:26:48.174 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:26:48.184 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:26:48.184 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:26:48.184 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:26:48.184 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:26:48.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:26:48.234 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:26:48.534 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:26:48.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:26:48.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:26:48.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 06:26:48.574 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:26:48.574 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 06:26:48.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 06:26:48.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:26:48.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:48.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:26:48.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:26:48.674 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:48.674 -07 000000480 INF: Autofocus start
17-03-18 06:26:48.674 -07 000000480 INF: MeasureProfile start
17-03-18 06:26:48.674 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:48.684 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:26:48.684 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:26:48.684 -07 000000480 INF: MeasureProfile done
17-03-18 06:26:48.684 -07 000000480 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:26:48.694 -07 000000480 INF: Autofocus finished
17-03-18 06:26:48.884 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:26:48.884 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:26:48.894 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.172089653449445. ----------
17-03-18 06:26:48.894 -07 000000610 INF: Cycle	149	Tile	18	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:26:48.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36088, sync = True, waitForSettling = True)
17-03-18 06:26:48.894 -07 000000610 INF: Z Motor: Moving to -0.165200 mm, started at -0.172090 mm, distance = 6.89 um
17-03-18 06:26:48.894 -07 000000610 INF: FPGA: Xmit ZDACW 36088\n [Z Motor]
17-03-18 06:26:48.904 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:26:48.904 -07 000000610 INF: FPGA: 'ZDACW 36088' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:26:48.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:48.904 -07 000000629 INF: FPGA: Recv ZDACR 36088
17-03-18 06:26:48.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:48.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:26:49.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:49.064 -07 000000611 INF: FPGA: Recv ZSGSRD 35015
17-03-18 06:26:49.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:49.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:49.074 -07 000000447 INF: FPGA: Recv ZSGSRD 35002
17-03-18 06:26:49.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:49.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:49.084 -07 000000502 INF: FPGA: Recv ZSGSRD 35007
17-03-18 06:26:49.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:49.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:49.094 -07 000000480 INF: FPGA: Recv ZSGSRD 35006
17-03-18 06:26:49.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:49.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:49.104 -07 000000474 INF: FPGA: Recv ZSGSRD 35009
17-03-18 06:26:49.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:49.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:49.114 -07 000000579 INF: FPGA: Recv ZSGSRD 35010
17-03-18 06:26:49.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:49.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:49.124 -07 000000447 INF: FPGA: Recv ZSGSRD 34999
17-03-18 06:26:49.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:49.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:49.134 -07 000000585 INF: FPGA: Recv ZSGSRD 35006
17-03-18 06:26:49.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:49.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:49.144 -07 000000467 INF: FPGA: Recv ZSGSRD 35009
17-03-18 06:26:49.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:49.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:49.154 -07 000000438 INF: FPGA: Recv ZSGSRD 35013
17-03-18 06:26:49.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:49.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:49.164 -07 000000611 INF: FPGA: Recv ZPIEZORD 30680
17-03-18 06:26:49.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:49.174 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.507 V. Piezo Error = -9.5 V.
17-03-18 06:26:49.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35008 (-164.4 uncal um), Error = 0.8 uncal um, Median = 35008 (-164.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 34999 (-164.3 uncal um), Max = 35015 (-164.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:26:49.174 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35008, posNoise = 7, negNoise = 9
17-03-18 06:26:49.174 -07 000000610 INF: Z Motor: After move to -0.165200, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:49.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:26:49.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:49.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:49.174 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:49.174 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:26:49.174 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:49.174 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:49.174 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:26:49.174 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:26:49.174 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:26:49.174 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:26:49.174 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:26:49.174 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:26:49.184 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:26:49.184 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:26:49.184 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:26:49.184 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:26:49.194 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 06:26:49.194 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:26:49.194 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:26:49.194 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:26:49.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36265 150\n [Camera]
17-03-18 06:26:49.394 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:26:49.854 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:26:49.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:26:49.854 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:49.854 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:49.854 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:26:49.854 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:26:49.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:26:49.854 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:49.864 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:49.864 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:26:50.044 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36265 844
17-03-18 06:26:50.194 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:26:50.254 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:26:50.254 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:26:50.254 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:50.254 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:26:50.254 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:26:50.254 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:50.254 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:50.254 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:26:50.254 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:50.264 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:26:50.424 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:50.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:50.424 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:50.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:50.424 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:50.424 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:50.424 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:26:50.424 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:50.424 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:50.424 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:26:50.614 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:26:50.614 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:50.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36265 150' command took 2 ms to send, 1414 ms to get response, and 1417 ms overall
17-03-18 06:26:50.614 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:26:50.614 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165222170669903. ------
17-03-18 06:26:50.624 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:50.624 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17152 mm
17-03-18 06:26:50.624 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:50.624 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 37468, sync = True, waitForSettling = False)
17-03-18 06:26:50.624 -07 000000592 INF: Z Motor: Moving to -0.171518 mm, started at -0.165222 mm, distance = -6.30 um
17-03-18 06:26:50.624 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:26:50.624 -07 000000502 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 06:26:50.624 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:50.634 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:50.754 -07 000000592 INF: FPGA: Xmit ZDACW 37468\n [Z Motor]
17-03-18 06:26:50.754 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:26:50.764 -07 000000592 INF: FPGA: 'ZDACW 37468' command took 124 ms to send, 0 ms to get response, and 135 ms overall
17-03-18 06:26:50.764 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:50.764 -07 000000479 INF: FPGA: Recv ZDACR 37468
17-03-18 06:26:50.774 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:50.774 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:50.774 -07 000000592 INF: Z Motor: MoveAbsStepped took 146 ms (did NOT wait for settling yet))
17-03-18 06:26:50.774 -07 000000437 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:26:50.784 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 155 ms overall
17-03-18 06:26:50.784 -07 000000502 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:50.784 -07 000000502 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:26:50.784 -07 000000502 INF: Y Motor: Moving 1353 steps-32
17-03-18 06:26:50.784 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:50.794 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:26:50.834 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 06:26:50.834 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:26:50.834 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:50.834 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:26:50.834 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:26:50.834 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:50.834 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:26:50.834 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:26:50.834 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 06:26:50.844 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:26:50.984 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:50.984 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 229 ms overall
17-03-18 06:26:51.164 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 06:26:51.164 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:26:51.194 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.011254,
17-03-18 06:26:51.224 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:51.224 -07 000000608 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:26:51.234 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:26:51.234 -07 000000502 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:51.234 -07 000000502 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 06:26:51.234 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.185 mm/sec
17-03-18 06:26:51.864 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:26:51.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:26:52.184 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:52.184 -07 000000585 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:26:52.194 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:52.194 -07 000000502 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:52.214 -07 000000502 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:26:52.214 -07 000000502 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:26:52.214 -07 000000502 INF: Y Motor: Moved to 74.8306 after 1586 ms (table move)
17-03-18 06:26:52.214 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171518 mm (DAC = 37468)
17-03-18 06:26:52.214 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:52.214 -07 000000467 INF: FPGA: Recv ZSGSRD 35991
17-03-18 06:26:52.224 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:26:52.224 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:52.224 -07 000000479 INF: FPGA: Recv ZSGSRD 35989
17-03-18 06:26:52.234 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:52.234 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:52.234 -07 000000501 INF: FPGA: Recv ZSGSRD 35993
17-03-18 06:26:52.244 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:52.244 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:52.244 -07 000000461 INF: FPGA: Recv ZSGSRD 35983
17-03-18 06:26:52.254 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:52.254 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:52.254 -07 000000438 INF: FPGA: Recv ZSGSRD 35992
17-03-18 06:26:52.264 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:52.264 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:52.264 -07 000000579 INF: FPGA: Recv ZSGSRD 35989
17-03-18 06:26:52.274 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:52.274 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:52.274 -07 000000502 INF: FPGA: Recv ZSGSRD 35984
17-03-18 06:26:52.284 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:52.284 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:52.284 -07 000000462 INF: FPGA: Recv ZSGSRD 35986
17-03-18 06:26:52.294 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:52.294 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:52.294 -07 000000569 INF: FPGA: Recv ZSGSRD 35992
17-03-18 06:26:52.304 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:52.304 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:52.304 -07 000000438 INF: FPGA: Recv ZSGSRD 35995
17-03-18 06:26:52.314 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:52.314 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:52.314 -07 000000591 INF: FPGA: Recv ZPIEZORD 31956
17-03-18 06:26:52.324 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:26:52.324 -07 000000629 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -8.9 V.
17-03-18 06:26:52.324 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35989 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35990 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35983 (-170.6 uncal um), Max = 35995 (-170.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:26:52.324 -07 000000629 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35989, posNoise = 6, negNoise = 6
17-03-18 06:26:52.324 -07 000000629 INF: Z Motor: After move to -0.171518, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:52.324 -07 000000629 INF: Z Motor: Settle wait time = 1591 ms, measure time = 105 ms (allowed 150 ms), total time = 1696 ms
17-03-18 06:26:52.324 -07 000000629 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:26:52.374 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1748 ms
17-03-18 06:26:52.374 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:26:52.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:52.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:52.374 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:52.374 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:52.374 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:26:52.374 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:52.374 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:26:52.374 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:26:52.384 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:26:52.384 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:26:52.394 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:26:52.394 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:26:52.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:26:52.444 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:26:52.744 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:26:52.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:26:52.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:26:52.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:26:52.784 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:26:52.784 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:26:52.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:26:52.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:26:52.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:52.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:26:52.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:26:52.884 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:52.884 -07 000000502 INF: Autofocus start
17-03-18 06:26:52.884 -07 000000502 INF: MeasureProfile start
17-03-18 06:26:52.884 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:52.894 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:26:52.894 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:26:52.894 -07 000000502 INF: MeasureProfile done
17-03-18 06:26:52.894 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:26:52.894 -07 000000502 INF: Autofocus finished
17-03-18 06:26:53.094 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:26:53.094 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:26:53.094 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.17152432278097. ----------
17-03-18 06:26:53.094 -07 000000610 INF: Cycle	149	Tile	19	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:26:53.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35982, sync = True, waitForSettling = True)
17-03-18 06:26:53.104 -07 000000610 INF: Z Motor: Moving to -0.164715 mm, started at -0.171524 mm, distance = 6.81 um
17-03-18 06:26:53.104 -07 000000610 INF: FPGA: Xmit ZDACW 35982\n [Z Motor]
17-03-18 06:26:53.104 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:26:53.114 -07 000000610 INF: FPGA: 'ZDACW 35982' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:26:53.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:53.114 -07 000000608 INF: FPGA: Recv ZDACR 35982
17-03-18 06:26:53.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:53.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:26:53.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:53.274 -07 000000611 INF: FPGA: Recv ZSGSRD 34935
17-03-18 06:26:53.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:26:53.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:53.284 -07 000000592 INF: FPGA: Recv ZSGSRD 34930
17-03-18 06:26:53.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:53.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:53.294 -07 000000455 INF: FPGA: Recv ZSGSRD 34931
17-03-18 06:26:53.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:53.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:53.304 -07 000000479 INF: FPGA: Recv ZSGSRD 34931
17-03-18 06:26:53.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:53.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:53.314 -07 000000461 INF: FPGA: Recv ZSGSRD 34933
17-03-18 06:26:53.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:53.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:53.324 -07 000000569 INF: FPGA: Recv ZSGSRD 34937
17-03-18 06:26:53.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:53.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:53.334 -07 000000592 INF: FPGA: Recv ZSGSRD 34927
17-03-18 06:26:53.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:53.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:53.344 -07 000000455 INF: FPGA: Recv ZSGSRD 34935
17-03-18 06:26:53.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:53.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:53.354 -07 000000382 INF: FPGA: Recv ZSGSRD 34928
17-03-18 06:26:53.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:53.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:26:53.364 -07 000000502 INF: FPGA: Recv ZSGSRD 34933
17-03-18 06:26:53.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:53.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:26:53.374 -07 000000569 INF: FPGA: Recv ZPIEZORD 30589
17-03-18 06:26:53.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:53.384 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.491 V. Piezo Error = -9.6 V.
17-03-18 06:26:53.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34932 (-163.9 uncal um), Error = 0.8 uncal um, Median = 34932 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 34927 (-163.8 uncal um), Max = 34937 (-163.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:26:53.384 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34932, posNoise = 5, negNoise = 5
17-03-18 06:26:53.384 -07 000000610 INF: Z Motor: After move to -0.164715, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:26:53.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:26:53.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:26:53.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:26:53.384 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:26:53.384 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:26:53.384 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:26:53.384 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:26:53.384 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:26:53.384 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:26:53.384 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:26:53.384 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:26:53.384 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:26:53.384 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:26:53.394 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:26:53.394 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:26:53.394 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:26:53.394 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:26:53.404 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:26:53.404 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:26:53.404 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:26:53.404 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:26:53.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36159 150\n [Camera]
17-03-18 06:26:53.604 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:26:54.064 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:26:54.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:26:54.064 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:26:54.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:26:54.064 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:54.064 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:54.074 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:54.074 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:26:54.074 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:54.074 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:26:54.254 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36159 844
17-03-18 06:26:54.404 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:26:54.444 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:26:54.444 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:26:54.444 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:54.444 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:26:54.444 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:26:54.444 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:54.454 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:54.454 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:54.454 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:26:54.464 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:26:54.624 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:26:54.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:26:54.624 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:26:54.624 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:26:54.634 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:26:54.634 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:26:54.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:26:54.634 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:26:54.634 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:26:54.634 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:26:54.814 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:26:54.814 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:26:54.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36159 150' command took 2 ms to send, 1409 ms to get response, and 1415 ms overall
17-03-18 06:26:55.034 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:26:55.034 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:26:55.034 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:55.034 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 06:26:55.034 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:26:55.034 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:26:55.044 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:55.044 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:26:55.044 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:26:55.044 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:26:55.044 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:26:55.194 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 149 ms.
17-03-18 06:26:55.194 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:26:55.234 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:26:55.234 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 06:26:55.234 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:26:55.234 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-18 06:26:55.244 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:26:55.244 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 06:26:55.744 -07 000000462 INF: FPGA: Recv EMIN
17-03-18 06:26:55.744 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:26:55.744 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 06:26:55.744 -07 000000629 INF: FPGA: Recv EMCUR 
17-03-18 06:26:55.754 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:26:55.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:26:55.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164733930547129. ------
17-03-18 06:26:55.754 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:26:55.754 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13928 mm
17-03-18 06:26:55.754 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:26:55.754 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:26:55.754 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:26:55.754 -07 000000474 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 06:26:55.764 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:26:55.764 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:26:55.764 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 30425, sync = True, waitForSettling = False)
17-03-18 06:26:55.764 -07 000000585 INF: Z Motor: Moving to -0.139277 mm, started at -0.164734 mm, distance = 25.46 um
17-03-18 06:26:55.764 -07 000000438 INF: FPGA: Recv YRDPOS 153255
17-03-18 06:26:55.774 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:26:55.774 -07 000000474 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:26:55.774 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:26:55.774 -07 000000474 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 06:26:55.774 -07 000000474 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:26:55.784 -07 000000585 INF: FPGA: Xmit ZDACW 30425\n [Z Motor]
17-03-18 06:26:55.784 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:26:55.794 -07 000000474 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:26:55.794 -07 000000585 INF: FPGA: 'ZDACW 30425' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:26:55.804 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:26:55.804 -07 000000502 INF: FPGA: Recv ZDACR 30425
17-03-18 06:26:55.814 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:26:55.814 -07 000000585 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 06:26:55.974 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:26:55.974 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:26:56.574 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.012614,
17-03-18 06:26:56.864 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:26:56.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:26:57.414 -07 000000462 INF: FPGA: Recv YMVTO 122702 23903
17-03-18 06:26:57.414 -07 000000474 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1640 ms overall
17-03-18 06:26:57.414 -07 000000474 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 06:26:57.414 -07 000000474 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 06:26:57.414 -07 000000474 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1640 ms, distance = 14.918 mm, average velocity = 9.096 mm/sec
17-03-18 06:27:00.264 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:00.264 -07 000000462 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:27:00.274 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:00.274 -07 000000474 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:00.314 -07 000000474 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:00.314 -07 000000474 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 06:27:00.314 -07 000000474 INF: Y Motor: Moved to 59.9102 after 4557 ms
17-03-18 06:27:00.314 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139277 mm (DAC = 30425)
17-03-18 06:27:00.314 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:00.324 -07 000000437 INF: FPGA: Recv ZSGSRD 30975
17-03-18 06:27:00.324 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:27:00.324 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:00.324 -07 000000579 INF: FPGA: Recv ZSGSRD 30970
17-03-18 06:27:00.334 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:27:00.334 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:00.334 -07 000000467 INF: FPGA: Recv ZSGSRD 30971
17-03-18 06:27:00.344 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:00.344 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:00.344 -07 000000455 INF: FPGA: Recv ZSGSRD 30966
17-03-18 06:27:00.354 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:00.354 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:00.354 -07 000000585 INF: FPGA: Recv ZSGSRD 30963
17-03-18 06:27:00.364 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:00.364 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:00.364 -07 000000474 INF: FPGA: Recv ZSGSRD 30970
17-03-18 06:27:00.374 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:00.374 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:00.374 -07 000000437 INF: FPGA: Recv ZSGSRD 30974
17-03-18 06:27:00.384 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:00.384 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:00.384 -07 000000592 INF: FPGA: Recv ZSGSRD 30969
17-03-18 06:27:00.394 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:00.394 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:00.394 -07 000000502 INF: FPGA: Recv ZSGSRD 30968
17-03-18 06:27:00.404 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:00.404 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:00.404 -07 000000382 INF: FPGA: Recv ZSGSRD 30973
17-03-18 06:27:00.414 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:00.414 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:00.414 -07 000000467 INF: FPGA: Recv ZPIEZORD 26427
17-03-18 06:27:00.424 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:00.424 -07 000000501 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -10.0 V.
17-03-18 06:27:00.424 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30970 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30970 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30963 (-138.4 uncal um), Max = 30975 (-138.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:27:00.424 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30970, posNoise = 5, negNoise = 7
17-03-18 06:27:00.424 -07 000000501 INF: Z Motor: After move to -0.139277, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:00.424 -07 000000501 INF: Z Motor: Settle wait time = 4558 ms, measure time = 101 ms (allowed 150 ms), total time = 4659 ms
17-03-18 06:27:00.424 -07 000000501 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:00.474 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4714 ms
17-03-18 06:27:00.474 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:00.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:00.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:00.474 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:00.474 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:00.474 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:00.474 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:00.474 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:27:00.474 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:27:00.504 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 06:27:00.504 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:00.504 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:27:00.504 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:00.514 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:27:00.524 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 06:27:00.524 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:00.564 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:00.864 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:00.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:00.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:00.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:27:00.904 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:00.904 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:00.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:27:00.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:27:00.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:00.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:27:00.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:27:01.004 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:01.004 -07 000000501 INF: Image SNR check: start
17-03-18 06:27:01.004 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:01.014 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:27:01.014 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:01.024 -07 000000501 INF: Image SNR check: pass  [peak (Max-Min)=114.93]
17-03-18 06:27:01.024 -07 000000501 INF: Autofocus start
17-03-18 06:27:01.024 -07 000000501 INF: MeasureProfile start
17-03-18 06:27:01.034 -07 000000501 INF: MeasureProfile done
17-03-18 06:27:01.034 -07 000000501 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:27:01.034 -07 000000501 INF: Autofocus finished
17-03-18 06:27:01.214 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:01.214 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 06:27:01.224 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139281202041472. ----------
17-03-18 06:27:01.224 -07 000000610 INF: Cycle	149	Tile	1	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:01.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28920, sync = True, waitForSettling = True)
17-03-18 06:27:01.224 -07 000000610 INF: Z Motor: Moving to -0.132387 mm, started at -0.139281 mm, distance = 6.89 um
17-03-18 06:27:01.224 -07 000000610 INF: FPGA: Xmit ZDACW 28920\n [Z Motor]
17-03-18 06:27:01.224 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:27:01.234 -07 000000610 INF: FPGA: 'ZDACW 28920' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:27:01.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:01.234 -07 000000438 INF: FPGA: Recv ZDACR 28920
17-03-18 06:27:01.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:01.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:01.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:01.394 -07 000000437 INF: FPGA: Recv ZSGSRD 29899
17-03-18 06:27:01.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:01.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:01.404 -07 000000461 INF: FPGA: Recv ZSGSRD 29896
17-03-18 06:27:01.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:01.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:01.414 -07 000000501 INF: FPGA: Recv ZSGSRD 29898
17-03-18 06:27:01.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:01.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:01.424 -07 000000474 INF: FPGA: Recv ZSGSRD 29898
17-03-18 06:27:01.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:01.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:01.434 -07 000000438 INF: FPGA: Recv ZSGSRD 29894
17-03-18 06:27:01.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:01.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:01.444 -07 000000591 INF: FPGA: Recv ZSGSRD 29901
17-03-18 06:27:01.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:01.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:01.454 -07 000000480 INF: FPGA: Recv ZSGSRD 29896
17-03-18 06:27:01.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:01.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:01.464 -07 000000611 INF: FPGA: Recv ZSGSRD 29899
17-03-18 06:27:01.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:01.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:01.474 -07 000000447 INF: FPGA: Recv ZSGSRD 29895
17-03-18 06:27:01.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:01.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:01.484 -07 000000438 INF: FPGA: Recv ZSGSRD 29892
17-03-18 06:27:01.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:01.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:01.494 -07 000000585 INF: FPGA: Recv ZPIEZORD 25308
17-03-18 06:27:01.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:01.504 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -10.1 V.
17-03-18 06:27:01.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29897 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29897 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29892 (-131.6 uncal um), Max = 29901 (-131.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:27:01.504 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29897, posNoise = 4, negNoise = 5
17-03-18 06:27:01.504 -07 000000610 INF: Z Motor: After move to -0.132387, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:01.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:27:01.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:01.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:01.504 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:01.504 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:01.504 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:01.504 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:01.504 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:01.504 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:01.504 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:27:01.504 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:01.504 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:27:01.504 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:27:01.514 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:01.514 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:01.514 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:27:01.524 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:27:01.524 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 06:27:01.524 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:01.534 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:27:01.534 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:01.544 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:27:01.544 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 06:27:01.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 29096 150\n [Camera]
17-03-18 06:27:01.744 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:01.864 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:27:01.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:27:01.934 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.981281,
17-03-18 06:27:02.204 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:27:02.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:27:02.204 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:02.204 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:27:02.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:27:02.204 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:02.204 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:02.204 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:27:02.214 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:02.214 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:27:02.394 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29096 844
17-03-18 06:27:02.544 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:02.584 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:27:02.584 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:27:02.584 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:02.584 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:27:02.584 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:27:02.584 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:02.584 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:02.594 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:02.594 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:27:02.594 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:27:02.764 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:27:02.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:27:02.764 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:02.764 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:02.764 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:27:02.764 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:27:02.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:27:02.774 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:02.774 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:02.774 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:27:02.954 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-18 06:27:02.954 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:02.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 29096 150' command took 2 ms to send, 1408 ms to get response, and 1416 ms overall
17-03-18 06:27:02.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:02.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132388022413362. ------
17-03-18 06:27:03.074 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13876 mm
17-03-18 06:27:03.074 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:03.074 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:03.074 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 30311, sync = True, waitForSettling = False)
17-03-18 06:27:03.074 -07 000000467 INF: Z Motor: Moving to -0.138755 mm, started at -0.132388 mm, distance = -6.37 um
17-03-18 06:27:03.074 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:27:03.074 -07 000000501 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 06:27:03.074 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:03.084 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:27:03.084 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:03.084 -07 000000437 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:27:03.094 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:03.094 -07 000000501 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:03.094 -07 000000501 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:03.094 -07 000000501 INF: Y Motor: Moving 1332 steps1
17-03-18 06:27:03.094 -07 000000467 INF: FPGA: Xmit ZDACW 30311\n [Z Motor]
17-03-18 06:27:03.094 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:27:03.104 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:03.104 -07 000000467 INF: FPGA: 'ZDACW 30311' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:27:03.114 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:03.124 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:03.124 -07 000000455 INF: FPGA: Recv ZDACR 30311
17-03-18 06:27:03.134 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:27:03.134 -07 000000467 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 06:27:03.164 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:27:03.164 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:27:03.164 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:03.164 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:27:03.164 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:27:03.164 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:03.164 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:03.174 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:03.174 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:27:03.174 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:27:03.304 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:03.304 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:27:03.494 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:27:03.494 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 06:27:03.534 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:03.534 -07 000000611 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:27:03.544 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:27:03.544 -07 000000501 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:03.544 -07 000000501 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:27:03.544 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.832 mm, average velocity = 2.081 mm/sec
17-03-18 06:27:04.494 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:04.494 -07 000000461 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:27:04.504 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:04.504 -07 000000501 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:04.534 -07 000000501 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:04.534 -07 000000501 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:27:04.534 -07 000000501 INF: Y Motor: Moved to 60.7324 after 1455 ms (table move)
17-03-18 06:27:04.534 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138755 mm (DAC = 30311)
17-03-18 06:27:04.534 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:04.544 -07 000000585 INF: FPGA: Recv ZSGSRD 30895
17-03-18 06:27:04.544 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:27:04.544 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:04.544 -07 000000455 INF: FPGA: Recv ZSGSRD 30883
17-03-18 06:27:04.554 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:27:04.554 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:04.554 -07 000000467 INF: FPGA: Recv ZSGSRD 30891
17-03-18 06:27:04.564 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:04.564 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:04.564 -07 000000447 INF: FPGA: Recv ZSGSRD 30893
17-03-18 06:27:04.574 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:04.574 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:04.574 -07 000000461 INF: FPGA: Recv ZSGSRD 30893
17-03-18 06:27:04.584 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:04.584 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:04.584 -07 000000480 INF: FPGA: Recv ZSGSRD 30888
17-03-18 06:27:04.594 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:04.594 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:04.594 -07 000000474 INF: FPGA: Recv ZSGSRD 30882
17-03-18 06:27:04.604 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:04.604 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:04.604 -07 000000467 INF: FPGA: Recv ZSGSRD 30881
17-03-18 06:27:04.614 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:04.614 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:04.614 -07 000000447 INF: FPGA: Recv ZSGSRD 30885
17-03-18 06:27:04.624 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:04.624 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:04.624 -07 000000585 INF: FPGA: Recv ZSGSRD 30889
17-03-18 06:27:04.634 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:04.634 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:04.634 -07 000000480 INF: FPGA: Recv ZPIEZORD 26643
17-03-18 06:27:04.644 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:04.644 -07 000000608 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.625 V. Piezo Error = -9.3 V.
17-03-18 06:27:04.644 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30888 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30888 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30881 (-137.9 uncal um), Max = 30895 (-138.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:27:04.644 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30888, posNoise = 7, negNoise = 7
17-03-18 06:27:04.644 -07 000000608 INF: Z Motor: After move to -0.138755, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:04.644 -07 000000608 INF: Z Motor: Settle wait time = 1458 ms, measure time = 103 ms (allowed 150 ms), total time = 1561 ms
17-03-18 06:27:04.644 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:04.694 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 06:27:04.694 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:04.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:04.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:04.694 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:04.694 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:04.694 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:04.694 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:04.694 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:04.694 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:04.704 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:04.704 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:04.714 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:27:04.714 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:27:04.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:04.754 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:05.054 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:05.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:05.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:05.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:27:05.094 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:05.104 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:05.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 386 ms overall
17-03-18 06:27:05.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:27:05.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:05.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:27:05.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:27:05.204 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:05.204 -07 000000479 INF: Autofocus start
17-03-18 06:27:05.204 -07 000000479 INF: MeasureProfile start
17-03-18 06:27:05.204 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:05.214 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:05.214 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:05.214 -07 000000479 INF: MeasureProfile done
17-03-18 06:27:05.214 -07 000000479 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:27:05.214 -07 000000479 INF: Autofocus finished
17-03-18 06:27:05.414 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:05.414 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:27:05.414 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138754416645847. ----------
17-03-18 06:27:05.414 -07 000000610 INF: Cycle	149	Tile	2	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:05.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28835, sync = True, waitForSettling = True)
17-03-18 06:27:05.424 -07 000000610 INF: Z Motor: Moving to -0.131998 mm, started at -0.138754 mm, distance = 6.76 um
17-03-18 06:27:05.424 -07 000000610 INF: FPGA: Xmit ZDACW 28835\n [Z Motor]
17-03-18 06:27:05.424 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:27:05.434 -07 000000610 INF: FPGA: 'ZDACW 28835' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:27:05.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:05.434 -07 000000438 INF: FPGA: Recv ZDACR 28835
17-03-18 06:27:05.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:05.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:05.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:05.594 -07 000000437 INF: FPGA: Recv ZSGSRD 29838
17-03-18 06:27:05.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:05.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:05.604 -07 000000467 INF: FPGA: Recv ZSGSRD 29834
17-03-18 06:27:05.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:05.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:05.614 -07 000000569 INF: FPGA: Recv ZSGSRD 29834
17-03-18 06:27:05.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:05.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:05.624 -07 000000591 INF: FPGA: Recv ZSGSRD 29839
17-03-18 06:27:05.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:05.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:05.634 -07 000000461 INF: FPGA: Recv ZSGSRD 29839
17-03-18 06:27:05.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:05.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:05.644 -07 000000474 INF: FPGA: Recv ZSGSRD 29837
17-03-18 06:27:05.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:05.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:05.654 -07 000000479 INF: FPGA: Recv ZSGSRD 29837
17-03-18 06:27:05.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:05.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:05.664 -07 000000474 INF: FPGA: Recv ZSGSRD 29840
17-03-18 06:27:05.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:05.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:05.674 -07 000000501 INF: FPGA: Recv ZSGSRD 29836
17-03-18 06:27:05.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:05.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:05.684 -07 000000438 INF: FPGA: Recv ZSGSRD 29835
17-03-18 06:27:05.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:05.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:05.694 -07 000000585 INF: FPGA: Recv ZPIEZORD 25266
17-03-18 06:27:05.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:05.704 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.400 V. Piezo Error = -10.0 V.
17-03-18 06:27:05.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29837 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29837 (-131.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29834 (-131.2 uncal um), Max = 29840 (-131.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:27:05.704 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29837, posNoise = 3, negNoise = 3
17-03-18 06:27:05.704 -07 000000610 INF: Z Motor: After move to -0.131998, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:05.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:27:05.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:05.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:05.704 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:05.704 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:05.704 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:05.704 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:05.704 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:05.704 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:05.704 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:05.704 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:05.704 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:27:05.704 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:05.714 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:27:05.714 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:05.714 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:05.714 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:05.724 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:27:05.724 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:27:05.724 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:27:05.724 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:27:05.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 29012 150\n [Camera]
17-03-18 06:27:05.924 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:06.384 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:27:06.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:27:06.384 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:06.394 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:27:06.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:27:06.394 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:06.394 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:06.394 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:27:06.394 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:06.394 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:27:06.584 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29012 844
17-03-18 06:27:06.724 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:06.784 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:27:06.784 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:27:06.784 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:06.794 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:06.794 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:27:06.794 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:27:06.794 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:27:06.794 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:06.794 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:06.804 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:27:06.864 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:27:06.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:27:06.954 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1216
17-03-18 06:27:06.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1216
17-03-18 06:27:06.954 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:06.954 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1216
17-03-18 06:27:06.954 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:06.954 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:27:06.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1216
17-03-18 06:27:06.954 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:06.954 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:06.954 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:27:07.144 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:27:07.144 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:07.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 29012 150' command took 2 ms to send, 1403 ms to get response, and 1415 ms overall
17-03-18 06:27:07.144 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:07.144 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132002569684857. ------
17-03-18 06:27:07.154 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:07.154 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13883 mm
17-03-18 06:27:07.154 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:07.154 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:07.154 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30328, sync = True, waitForSettling = False)
17-03-18 06:27:07.154 -07 000000569 INF: Z Motor: Moving to -0.138833 mm, started at -0.132003 mm, distance = -6.83 um
17-03-18 06:27:07.154 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:27:07.154 -07 000000455 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 06:27:07.164 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:07.164 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:07.164 -07 000000611 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:27:07.174 -07 000000569 INF: FPGA: Xmit ZDACW 30328\n [Z Motor]
17-03-18 06:27:07.174 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:27:07.174 -07 000000455 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:07.174 -07 000000455 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:07.174 -07 000000455 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:27:07.174 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:27:07.184 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:07.184 -07 000000569 INF: FPGA: 'ZDACW 30328' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:27:07.194 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:07.204 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:07.204 -07 000000461 INF: FPGA: Recv ZDACR 30328
17-03-18 06:27:07.214 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:27:07.214 -07 000000569 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 06:27:07.304 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.986717,
17-03-18 06:27:07.354 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:27:07.354 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:27:07.354 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:07.364 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:27:07.364 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:27:07.364 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:07.364 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:27:07.364 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:27:07.364 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:07.374 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:27:07.384 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:07.384 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:27:07.564 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 06:27:07.564 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:27:07.644 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:07.644 -07 000000467 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:27:07.654 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:27:07.654 -07 000000455 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:07.654 -07 000000455 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:27:07.654 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 06:27:08.604 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:08.604 -07 000000447 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:27:08.614 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:08.614 -07 000000455 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:08.644 -07 000000455 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:08.644 -07 000000455 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:27:08.644 -07 000000455 INF: Y Motor: Moved to 61.5630 after 1488 ms (table move)
17-03-18 06:27:08.644 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138833 mm (DAC = 30328)
17-03-18 06:27:08.644 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:08.654 -07 000000592 INF: FPGA: Recv ZSGSRD 30904
17-03-18 06:27:08.654 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 06:27:08.654 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:08.654 -07 000000461 INF: FPGA: Recv ZSGSRD 30911
17-03-18 06:27:08.664 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:27:08.664 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:08.664 -07 000000569 INF: FPGA: Recv ZSGSRD 30895
17-03-18 06:27:08.674 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:08.674 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:08.674 -07 000000502 INF: FPGA: Recv ZSGSRD 30896
17-03-18 06:27:08.684 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:08.684 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:08.684 -07 000000467 INF: FPGA: Recv ZSGSRD 30896
17-03-18 06:27:08.694 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:08.694 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:08.694 -07 000000592 INF: FPGA: Recv ZSGSRD 30906
17-03-18 06:27:08.704 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:08.704 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:08.704 -07 000000455 INF: FPGA: Recv ZSGSRD 30904
17-03-18 06:27:08.714 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:08.714 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:08.714 -07 000000479 INF: FPGA: Recv ZSGSRD 30900
17-03-18 06:27:08.724 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:08.724 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:08.724 -07 000000629 INF: FPGA: Recv ZSGSRD 30906
17-03-18 06:27:08.734 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:08.734 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:08.734 -07 000000474 INF: FPGA: Recv ZSGSRD 30904
17-03-18 06:27:08.744 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:08.744 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:08.744 -07 000000591 INF: FPGA: Recv ZPIEZORD 26671
17-03-18 06:27:08.754 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:08.754 -07 000000585 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.628 V. Piezo Error = -9.3 V.
17-03-18 06:27:08.754 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30902 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30904 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30895 (-138.0 uncal um), Max = 30911 (-138.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:27:08.754 -07 000000585 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30902, posNoise = 9, negNoise = 7
17-03-18 06:27:08.754 -07 000000585 INF: Z Motor: After move to -0.138833, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:08.754 -07 000000585 INF: Z Motor: Settle wait time = 1492 ms, measure time = 104 ms (allowed 150 ms), total time = 1596 ms
17-03-18 06:27:08.754 -07 000000585 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:08.804 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1649 ms
17-03-18 06:27:08.804 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:08.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:08.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:08.804 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:08.804 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:08.804 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:08.804 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:08.804 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:08.804 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:08.814 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:08.814 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:08.824 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:27:08.824 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:27:08.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:08.864 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:09.164 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:09.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:09.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:09.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 06:27:09.204 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:09.204 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:09.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:27:09.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:27:09.284 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:09.284 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:27:09.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:27:09.304 -07 000000629 INF: Autofocus start
17-03-18 06:27:09.304 -07 000000629 INF: MeasureProfile start
17-03-18 06:27:09.304 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:09.304 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:09.314 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:27:09.314 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:09.314 -07 000000629 INF: MeasureProfile done
17-03-18 06:27:09.314 -07 000000629 INF: X=11  Z correction [um]=0.02896596
17-03-18 06:27:09.314 -07 000000629 INF: Autofocus finished
17-03-18 06:27:09.514 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:09.514 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:27:09.514 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138844355615832. ----------
17-03-18 06:27:09.514 -07 000000610 INF: Cycle	149	Tile	3	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:09.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28846, sync = True, waitForSettling = True)
17-03-18 06:27:09.524 -07 000000610 INF: Z Motor: Moving to -0.132049 mm, started at -0.138844 mm, distance = 6.80 um
17-03-18 06:27:09.524 -07 000000610 INF: FPGA: Xmit ZDACW 28846\n [Z Motor]
17-03-18 06:27:09.524 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:27:09.534 -07 000000610 INF: FPGA: 'ZDACW 28846' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:27:09.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:09.534 -07 000000462 INF: FPGA: Recv ZDACR 28846
17-03-18 06:27:09.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:09.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:09.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:09.694 -07 000000592 INF: FPGA: Recv ZSGSRD 29855
17-03-18 06:27:09.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:09.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:09.704 -07 000000438 INF: FPGA: Recv ZSGSRD 29843
17-03-18 06:27:09.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:09.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:09.714 -07 000000569 INF: FPGA: Recv ZSGSRD 29848
17-03-18 06:27:09.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:09.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:09.724 -07 000000461 INF: FPGA: Recv ZSGSRD 29849
17-03-18 06:27:09.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:27:09.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:09.734 -07 000000462 INF: FPGA: Recv ZSGSRD 29840
17-03-18 06:27:09.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:09.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:09.744 -07 000000591 INF: FPGA: Recv ZSGSRD 29848
17-03-18 06:27:09.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:09.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:09.754 -07 000000474 INF: FPGA: Recv ZSGSRD 29839
17-03-18 06:27:09.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:09.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:09.764 -07 000000437 INF: FPGA: Recv ZSGSRD 29848
17-03-18 06:27:09.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:09.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:09.774 -07 000000480 INF: FPGA: Recv ZSGSRD 29839
17-03-18 06:27:09.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:09.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:09.784 -07 000000608 INF: FPGA: Recv ZSGSRD 29841
17-03-18 06:27:09.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:09.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:09.794 -07 000000480 INF: FPGA: Recv ZPIEZORD 25307
17-03-18 06:27:09.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:09.804 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.0 V.
17-03-18 06:27:09.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29845 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29846 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29839 (-131.2 uncal um), Max = 29855 (-131.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:27:09.804 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29845, posNoise = 10, negNoise = 6
17-03-18 06:27:09.804 -07 000000610 INF: Z Motor: After move to -0.132049, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:09.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:27:09.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:09.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:09.804 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:09.804 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:09.804 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:09.804 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:09.804 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:09.804 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:09.804 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:27:09.804 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:09.804 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:09.804 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:09.814 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:27:09.814 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:09.814 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:09.814 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:09.814 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:27:09.814 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:27:09.824 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:27:09.824 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:27:09.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 29023 150\n [Camera]
17-03-18 06:27:10.024 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:10.484 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:27:10.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:27:10.484 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:10.484 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:10.484 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:27:10.484 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:27:10.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:27:10.484 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:10.484 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:10.484 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:27:10.674 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29023 844
17-03-18 06:27:10.824 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:10.864 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:27:10.864 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:27:10.864 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:10.864 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:27:10.864 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:27:10.864 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:10.864 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:10.864 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:10.864 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:27:10.874 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:27:11.044 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:27:11.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:27:11.044 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:11.044 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:11.044 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:27:11.054 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:27:11.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:27:11.054 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:11.054 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:11.054 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:27:11.234 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:27:11.234 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:11.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 29023 150' command took 2 ms to send, 1408 ms to get response, and 1414 ms overall
17-03-18 06:27:11.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:11.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132053963381991. ------
17-03-18 06:27:11.244 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:11.244 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13845 mm
17-03-18 06:27:11.244 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:11.244 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 30245, sync = True, waitForSettling = False)
17-03-18 06:27:11.244 -07 000000437 INF: Z Motor: Moving to -0.138453 mm, started at -0.132054 mm, distance = -6.40 um
17-03-18 06:27:11.244 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:27:11.244 -07 000000579 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 06:27:11.254 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:11.254 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:11.254 -07 000000437 INF: FPGA: Xmit ZDACW 30245\n [Z Motor]
17-03-18 06:27:11.254 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:27:11.264 -07 000000437 INF: FPGA: 'ZDACW 30245' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:11.264 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:11.264 -07 000000501 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:27:11.274 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:27:11.274 -07 000000579 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:11.274 -07 000000579 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:11.274 -07 000000579 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:27:11.274 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:11.284 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:11.284 -07 000000502 INF: FPGA: Recv ZDACR 30245
17-03-18 06:27:11.294 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:27:11.294 -07 000000437 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:27:11.294 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:11.454 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:27:11.454 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:27:11.454 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:11.454 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:27:11.454 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:27:11.454 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:11.454 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:11.454 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:27:11.454 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:27:11.464 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:27:11.474 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:11.474 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:27:11.664 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 06:27:11.664 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:27:11.724 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:11.724 -07 000000592 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:27:11.734 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:11.734 -07 000000579 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:11.734 -07 000000579 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:27:11.734 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 06:27:11.864 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:27:11.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:27:12.674 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.985358,
17-03-18 06:27:12.684 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:12.684 -07 000000502 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:27:12.694 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:12.694 -07 000000579 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:12.724 -07 000000579 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:12.724 -07 000000579 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:27:12.724 -07 000000579 INF: Y Motor: Moved to 62.3945 after 1476 ms (table move)
17-03-18 06:27:12.724 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138453 mm (DAC = 30245)
17-03-18 06:27:12.734 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:12.734 -07 000000479 INF: FPGA: Recv ZSGSRD 30836
17-03-18 06:27:12.744 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:12.744 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:12.744 -07 000000474 INF: FPGA: Recv ZSGSRD 30834
17-03-18 06:27:12.754 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:12.754 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:12.754 -07 000000437 INF: FPGA: Recv ZSGSRD 30841
17-03-18 06:27:12.764 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:12.764 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:12.764 -07 000000569 INF: FPGA: Recv ZSGSRD 30834
17-03-18 06:27:12.774 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:12.774 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:12.774 -07 000000591 INF: FPGA: Recv ZSGSRD 30853
17-03-18 06:27:12.784 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:12.784 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:12.784 -07 000000501 INF: FPGA: Recv ZSGSRD 30845
17-03-18 06:27:12.794 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:12.794 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:12.794 -07 000000480 INF: FPGA: Recv ZSGSRD 30850
17-03-18 06:27:12.804 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:12.804 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:12.804 -07 000000474 INF: FPGA: Recv ZSGSRD 30842
17-03-18 06:27:12.814 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:12.814 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:12.814 -07 000000479 INF: FPGA: Recv ZSGSRD 30843
17-03-18 06:27:12.824 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:12.824 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:12.824 -07 000000592 INF: FPGA: Recv ZSGSRD 30841
17-03-18 06:27:12.834 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:12.834 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:12.834 -07 000000437 INF: FPGA: Recv ZPIEZORD 26626
17-03-18 06:27:12.844 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:12.844 -07 000000585 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.615 V. Piezo Error = -9.3 V.
17-03-18 06:27:12.844 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30842 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30842 (-137.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30834 (-137.6 uncal um), Max = 30853 (-137.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:27:12.844 -07 000000585 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30842, posNoise = 11, negNoise = 8
17-03-18 06:27:12.844 -07 000000585 INF: Z Motor: After move to -0.138453, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:12.844 -07 000000585 INF: Z Motor: Settle wait time = 1479 ms, measure time = 111 ms (allowed 150 ms), total time = 1590 ms
17-03-18 06:27:12.844 -07 000000585 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:12.884 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 06:27:12.884 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:12.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:12.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:12.884 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:12.884 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:12.884 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:12.884 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:12.884 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:12.884 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:12.894 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:12.894 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:12.894 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:27:12.894 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:27:12.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:12.954 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:13.254 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:13.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:13.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:13.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 06:27:13.284 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:13.284 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:13.284 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:27:13.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:27:13.364 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:13.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:27:13.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:27:13.384 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:13.384 -07 000000629 INF: Autofocus start
17-03-18 06:27:13.384 -07 000000629 INF: MeasureProfile start
17-03-18 06:27:13.384 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:13.394 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:13.394 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:13.394 -07 000000629 INF: MeasureProfile done
17-03-18 06:27:13.394 -07 000000629 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:27:13.394 -07 000000629 INF: Autofocus finished
17-03-18 06:27:13.594 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:13.594 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:27:13.594 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.138458902887326. ----------
17-03-18 06:27:13.594 -07 000000610 INF: Cycle	149	Tile	4	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:13.604 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28769, sync = True, waitForSettling = True)
17-03-18 06:27:13.604 -07 000000610 INF: Z Motor: Moving to -0.131696 mm, started at -0.138459 mm, distance = 6.76 um
17-03-18 06:27:13.604 -07 000000610 INF: FPGA: Xmit ZDACW 28769\n [Z Motor]
17-03-18 06:27:13.604 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:27:13.614 -07 000000610 INF: FPGA: 'ZDACW 28769' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:13.614 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:13.614 -07 000000502 INF: FPGA: Recv ZDACR 28769
17-03-18 06:27:13.624 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:13.624 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:13.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:13.774 -07 000000455 INF: FPGA: Recv ZSGSRD 29789
17-03-18 06:27:13.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:13.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:13.784 -07 000000462 INF: FPGA: Recv ZSGSRD 29791
17-03-18 06:27:13.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:13.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:13.794 -07 000000462 INF: FPGA: Recv ZSGSRD 29793
17-03-18 06:27:13.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:13.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:13.804 -07 000000501 INF: FPGA: Recv ZSGSRD 29787
17-03-18 06:27:13.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:13.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:13.814 -07 000000591 INF: FPGA: Recv ZSGSRD 29795
17-03-18 06:27:13.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:13.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:13.824 -07 000000592 INF: FPGA: Recv ZSGSRD 29796
17-03-18 06:27:13.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:13.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:13.834 -07 000000579 INF: FPGA: Recv ZSGSRD 29785
17-03-18 06:27:13.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:13.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:13.844 -07 000000608 INF: FPGA: Recv ZSGSRD 29783
17-03-18 06:27:13.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:13.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:13.854 -07 000000501 INF: FPGA: Recv ZSGSRD 29794
17-03-18 06:27:13.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:13.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:13.864 -07 000000474 INF: FPGA: Recv ZSGSRD 29791
17-03-18 06:27:13.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:13.874 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:13.874 -07 000000569 INF: FPGA: Recv ZPIEZORD 25269
17-03-18 06:27:13.884 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:13.884 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.9 V.
17-03-18 06:27:13.884 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29790 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29791 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29783 (-130.9 uncal um), Max = 29796 (-131.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:27:13.884 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29790, posNoise = 6, negNoise = 7
17-03-18 06:27:13.884 -07 000000610 INF: Z Motor: After move to -0.131696, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:13.884 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:27:13.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:13.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:13.884 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:13.884 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:13.884 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:13.884 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:13.884 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:13.884 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:13.884 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:13.884 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:13.884 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:27:13.884 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:13.884 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:13.884 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:13.894 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:27:13.894 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:13.904 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:27:13.904 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:27:13.904 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:27:13.904 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:27:13.904 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28946 150\n [Camera]
17-03-18 06:27:14.104 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:14.564 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:27:14.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:27:14.564 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:14.564 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:14.564 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 06:27:14.574 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:27:14.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:27:14.574 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:14.574 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:14.574 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 06:27:14.764 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28946 844
17-03-18 06:27:14.914 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:14.964 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:27:14.964 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:27:14.964 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:14.964 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:27:14.964 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:27:14.964 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:14.974 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:14.974 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:27:14.974 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:14.974 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:27:15.134 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:27:15.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:27:15.134 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:15.134 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:15.134 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:27:15.134 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:27:15.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:27:15.134 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:15.134 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:15.134 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:27:15.324 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:27:15.324 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:15.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28946 150' command took 2 ms to send, 1404 ms to get response, and 1415 ms overall
17-03-18 06:27:15.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:15.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.131700631714194. ------
17-03-18 06:27:15.334 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:15.334 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13835 mm
17-03-18 06:27:15.334 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:15.334 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:15.334 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30223, sync = True, waitForSettling = False)
17-03-18 06:27:15.334 -07 000000608 INF: Z Motor: Moving to -0.138352 mm, started at -0.131701 mm, distance = -6.65 um
17-03-18 06:27:15.334 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:27:15.334 -07 000000462 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 06:27:15.344 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:15.344 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:15.344 -07 000000569 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:27:15.354 -07 000000608 INF: FPGA: Xmit ZDACW 30223\n [Z Motor]
17-03-18 06:27:15.354 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:27:15.354 -07 000000462 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:15.354 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:27:15.354 -07 000000462 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:15.354 -07 000000462 INF: Y Motor: Moving 1340 steps-17
17-03-18 06:27:15.364 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:15.364 -07 000000608 INF: FPGA: 'ZDACW 30223' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:27:15.374 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:15.384 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:15.384 -07 000000591 INF: FPGA: Recv ZDACR 30223
17-03-18 06:27:15.394 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:27:15.394 -07 000000608 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-18 06:27:15.524 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:27:15.524 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:27:15.524 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:15.524 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:27:15.524 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:27:15.524 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:15.534 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:15.534 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:27:15.534 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:27:15.534 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:27:15.564 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:15.564 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:27:15.744 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:27:15.744 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 06:27:15.804 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:15.804 -07 000000611 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:27:15.814 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:15.814 -07 000000462 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:15.814 -07 000000462 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:27:15.814 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.133 mm/sec
17-03-18 06:27:16.764 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:16.764 -07 000000480 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:27:16.774 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:16.774 -07 000000462 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:16.804 -07 000000462 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:16.804 -07 000000462 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:27:16.804 -07 000000462 INF: Y Motor: Moved to 63.2231 after 1469 ms (table move)
17-03-18 06:27:16.804 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138352 mm (DAC = 30223)
17-03-18 06:27:16.804 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:16.814 -07 000000480 INF: FPGA: Recv ZSGSRD 30829
17-03-18 06:27:16.814 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:27:16.814 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:16.814 -07 000000608 INF: FPGA: Recv ZSGSRD 30833
17-03-18 06:27:16.824 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:27:16.824 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:16.824 -07 000000569 INF: FPGA: Recv ZSGSRD 30829
17-03-18 06:27:16.834 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:16.834 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:16.834 -07 000000467 INF: FPGA: Recv ZSGSRD 30825
17-03-18 06:27:16.844 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:16.844 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:16.844 -07 000000585 INF: FPGA: Recv ZSGSRD 30827
17-03-18 06:27:16.854 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:16.854 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:16.854 -07 000000502 INF: FPGA: Recv ZSGSRD 30823
17-03-18 06:27:16.864 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:16.864 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:16.864 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:27:16.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:27:16.864 -07 000000608 INF: FPGA: Recv ZSGSRD 30825
17-03-18 06:27:16.874 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:16.874 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:16.874 -07 000000591 INF: FPGA: Recv ZSGSRD 30827
17-03-18 06:27:16.884 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:16.884 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:16.884 -07 000000579 INF: FPGA: Recv ZSGSRD 30826
17-03-18 06:27:16.894 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:16.894 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:16.894 -07 000000474 INF: FPGA: Recv ZSGSRD 30833
17-03-18 06:27:16.904 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:16.904 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:16.904 -07 000000608 INF: FPGA: Recv ZPIEZORD 26614
17-03-18 06:27:16.914 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:16.914 -07 000000501 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -9.3 V.
17-03-18 06:27:16.914 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30828 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30827 (-137.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30823 (-137.5 uncal um), Max = 30833 (-137.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:27:16.914 -07 000000501 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30828, posNoise = 5, negNoise = 5
17-03-18 06:27:16.914 -07 000000501 INF: Z Motor: After move to -0.138352, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:16.914 -07 000000501 INF: Z Motor: Settle wait time = 1472 ms, measure time = 103 ms (allowed 150 ms), total time = 1575 ms
17-03-18 06:27:16.914 -07 000000501 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:16.964 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 06:27:16.964 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:16.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:16.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:16.964 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:16.964 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:16.964 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:16.964 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:16.964 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:16.974 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:16.974 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:16.974 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:16.984 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:27:16.984 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:27:16.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:17.034 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:17.324 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:17.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:17.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:17.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 06:27:17.364 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:17.364 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:17.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:27:17.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:27:17.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:17.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:27:17.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:27:17.474 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:17.474 -07 000000437 INF: Autofocus start
17-03-18 06:27:17.474 -07 000000437 INF: MeasureProfile start
17-03-18 06:27:17.474 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:17.484 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:17.484 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:17.484 -07 000000437 INF: MeasureProfile done
17-03-18 06:27:17.484 -07 000000437 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 06:27:17.484 -07 000000437 INF: Autofocus finished
17-03-18 06:27:17.684 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:17.684 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:27:17.684 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138368963917342. ----------
17-03-18 06:27:17.694 -07 000000610 INF: Cycle	149	Tile	5	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:17.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28701, sync = True, waitForSettling = True)
17-03-18 06:27:17.694 -07 000000610 INF: Z Motor: Moving to -0.131385 mm, started at -0.138369 mm, distance = 6.98 um
17-03-18 06:27:17.694 -07 000000610 INF: FPGA: Xmit ZDACW 28701\n [Z Motor]
17-03-18 06:27:17.694 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:27:17.704 -07 000000610 INF: FPGA: 'ZDACW 28701' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:17.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:17.704 -07 000000479 INF: FPGA: Recv ZDACR 28701
17-03-18 06:27:17.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:17.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:17.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:17.864 -07 000000579 INF: FPGA: Recv ZSGSRD 29742
17-03-18 06:27:17.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:17.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:17.874 -07 000000611 INF: FPGA: Recv ZSGSRD 29744
17-03-18 06:27:17.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:17.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:17.884 -07 000000462 INF: FPGA: Recv ZSGSRD 29735
17-03-18 06:27:17.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:17.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:17.894 -07 000000467 INF: FPGA: Recv ZSGSRD 29741
17-03-18 06:27:17.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:17.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:17.904 -07 000000592 INF: FPGA: Recv ZSGSRD 29744
17-03-18 06:27:17.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:17.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:17.914 -07 000000501 INF: FPGA: Recv ZSGSRD 29743
17-03-18 06:27:17.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:17.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:17.924 -07 000000608 INF: FPGA: Recv ZSGSRD 29739
17-03-18 06:27:17.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:17.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:17.934 -07 000000479 INF: FPGA: Recv ZSGSRD 29745
17-03-18 06:27:17.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:17.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:17.944 -07 000000502 INF: FPGA: Recv ZSGSRD 29743
17-03-18 06:27:17.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:17.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:17.954 -07 000000437 INF: FPGA: Recv ZSGSRD 29743
17-03-18 06:27:17.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:17.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:17.964 -07 000000461 INF: FPGA: Recv ZPIEZORD 25198
17-03-18 06:27:17.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:17.974 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -10.0 V.
17-03-18 06:27:17.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29742 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29743 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29735 (-130.6 uncal um), Max = 29745 (-130.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:27:17.974 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29742, posNoise = 3, negNoise = 7
17-03-18 06:27:17.974 -07 000000610 INF: Z Motor: After move to -0.131385, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:17.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:27:17.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:17.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:17.974 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:17.974 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:17.974 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:17.974 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:17.974 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:17.974 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:17.974 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:27:17.974 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:17.974 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:27:17.974 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:17.984 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:17.984 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:17.984 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:27:17.984 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:17.994 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:27:17.994 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:27:17.994 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:27:17.994 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:27:17.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28878 150\n [Camera]
17-03-18 06:27:18.054 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.98264,
17-03-18 06:27:18.194 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:18.654 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 654
17-03-18 06:27:18.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 654
17-03-18 06:27:18.654 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:18.654 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:18.654 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:27:18.654 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 654
17-03-18 06:27:18.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 654
17-03-18 06:27:18.654 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:18.654 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:18.654 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:27:18.844 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28878 844
17-03-18 06:27:18.994 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:19.034 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:27:19.034 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:27:19.034 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:19.034 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:27:19.034 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:27:19.034 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:19.034 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:27:19.034 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:27:19.034 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:27:19.044 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:27:19.214 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:27:19.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:27:19.214 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:19.214 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:19.214 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 06:27:19.224 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:27:19.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:27:19.224 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:19.224 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:19.224 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 06:27:19.404 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:27:19.404 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:19.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28878 150' command took 2 ms to send, 1408 ms to get response, and 1414 ms overall
17-03-18 06:27:19.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:19.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.131392269531389. ------
17-03-18 06:27:19.414 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:19.414 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13782 mm
17-03-18 06:27:19.414 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:19.414 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:27:19.414 -07 000000569 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 06:27:19.414 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 30106, sync = True, waitForSettling = False)
17-03-18 06:27:19.414 -07 000000467 INF: Z Motor: Moving to -0.137816 mm, started at -0.131392 mm, distance = -6.42 um
17-03-18 06:27:19.424 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:19.424 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:19.424 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:27:19.424 -07 000000501 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:27:19.434 -07 000000467 INF: FPGA: Xmit ZDACW 30106\n [Z Motor]
17-03-18 06:27:19.434 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:27:19.434 -07 000000569 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:19.434 -07 000000569 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:19.434 -07 000000569 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:27:19.434 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:27:19.444 -07 000000467 INF: FPGA: 'ZDACW 30106' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:27:19.444 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:19.454 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:19.464 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:19.464 -07 000000611 INF: FPGA: Recv ZDACR 30106
17-03-18 06:27:19.474 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:27:19.474 -07 000000467 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:27:19.614 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:27:19.614 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:27:19.614 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:19.614 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 06:27:19.614 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:27:19.614 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:19.624 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:19.624 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 06:27:19.624 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:27:19.624 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:27:19.644 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:19.644 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 06:27:19.824 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 06:27:19.824 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:27:19.884 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:19.884 -07 000000629 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:27:19.894 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:27:19.894 -07 000000569 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:19.894 -07 000000569 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 06:27:19.894 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.109 mm/sec
17-03-18 06:27:20.844 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:20.844 -07 000000579 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:27:20.854 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:20.854 -07 000000569 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:20.884 -07 000000569 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:20.884 -07 000000569 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:27:20.884 -07 000000569 INF: Y Motor: Moved to 64.0562 after 1463 ms (table move)
17-03-18 06:27:20.884 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137816 mm (DAC = 30106)
17-03-18 06:27:20.884 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:20.884 -07 000000592 INF: FPGA: Recv ZSGSRD 30751
17-03-18 06:27:20.894 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:27:20.894 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:20.894 -07 000000629 INF: FPGA: Recv ZSGSRD 30745
17-03-18 06:27:20.904 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:20.904 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:20.904 -07 000000502 INF: FPGA: Recv ZSGSRD 30739
17-03-18 06:27:20.914 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:20.914 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:20.914 -07 000000579 INF: FPGA: Recv ZSGSRD 30735
17-03-18 06:27:20.924 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:20.924 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:20.924 -07 000000462 INF: FPGA: Recv ZSGSRD 30739
17-03-18 06:27:20.934 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:20.934 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:20.934 -07 000000608 INF: FPGA: Recv ZSGSRD 30742
17-03-18 06:27:20.944 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:20.944 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:20.944 -07 000000592 INF: FPGA: Recv ZSGSRD 30740
17-03-18 06:27:20.954 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:27:20.954 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:20.954 -07 000000501 INF: FPGA: Recv ZSGSRD 30743
17-03-18 06:27:20.964 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:20.964 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:20.964 -07 000000502 INF: FPGA: Recv ZSGSRD 30743
17-03-18 06:27:20.974 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:20.974 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:20.974 -07 000000569 INF: FPGA: Recv ZSGSRD 30746
17-03-18 06:27:20.984 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:20.984 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:20.984 -07 000000480 INF: FPGA: Recv ZPIEZORD 26552
17-03-18 06:27:20.994 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:20.994 -07 000000474 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -9.2 V.
17-03-18 06:27:20.994 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30742 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30742 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30735 (-137.0 uncal um), Max = 30751 (-137.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:27:20.994 -07 000000474 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30742, posNoise = 9, negNoise = 7
17-03-18 06:27:20.994 -07 000000474 INF: Z Motor: After move to -0.137816, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:20.994 -07 000000474 INF: Z Motor: Settle wait time = 1466 ms, measure time = 105 ms (allowed 150 ms), total time = 1571 ms
17-03-18 06:27:20.994 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:21.044 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 06:27:21.044 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:21.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:21.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:21.064 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:21.064 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:21.064 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:21.064 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:21.064 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:21.064 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:21.064 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:21.064 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:21.074 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 06:27:21.074 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:27:21.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:21.124 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:21.424 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:21.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:21.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:21.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-18 06:27:21.464 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:21.464 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:21.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:27:21.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:27:21.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:21.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:27:21.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:27:21.564 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:21.564 -07 000000502 INF: Autofocus start
17-03-18 06:27:21.564 -07 000000502 INF: MeasureProfile start
17-03-18 06:27:21.564 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:21.574 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:21.574 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:21.574 -07 000000502 INF: MeasureProfile done
17-03-18 06:27:21.584 -07 000000502 INF: X=-48  Z correction [um]=-0.2370583
17-03-18 06:27:21.584 -07 000000502 INF: Autofocus finished
17-03-18 06:27:21.774 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:21.774 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:27:21.774 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.13781648167315. ----------
17-03-18 06:27:21.774 -07 000000610 INF: Cycle	149	Tile	6	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:21.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28567, sync = True, waitForSettling = True)
17-03-18 06:27:21.784 -07 000000610 INF: Z Motor: Moving to -0.130771 mm, started at -0.137816 mm, distance = 7.05 um
17-03-18 06:27:21.784 -07 000000610 INF: FPGA: Xmit ZDACW 28567\n [Z Motor]
17-03-18 06:27:21.784 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:27:21.794 -07 000000610 INF: FPGA: 'ZDACW 28567' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:27:21.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:21.794 -07 000000591 INF: FPGA: Recv ZDACR 28567
17-03-18 06:27:21.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:21.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:21.864 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:27:21.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:27:21.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:21.954 -07 000000629 INF: FPGA: Recv ZSGSRD 29649
17-03-18 06:27:21.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:21.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:21.964 -07 000000474 INF: FPGA: Recv ZSGSRD 29642
17-03-18 06:27:21.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:21.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:21.974 -07 000000480 INF: FPGA: Recv ZSGSRD 29650
17-03-18 06:27:21.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:21.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:21.984 -07 000000592 INF: FPGA: Recv ZSGSRD 29655
17-03-18 06:27:21.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:21.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:21.994 -07 000000585 INF: FPGA: Recv ZSGSRD 29647
17-03-18 06:27:22.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:22.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:22.004 -07 000000462 INF: FPGA: Recv ZSGSRD 29644
17-03-18 06:27:22.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:22.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:22.014 -07 000000608 INF: FPGA: Recv ZSGSRD 29646
17-03-18 06:27:22.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:22.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:22.024 -07 000000461 INF: FPGA: Recv ZSGSRD 29651
17-03-18 06:27:22.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:22.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:22.034 -07 000000437 INF: FPGA: Recv ZSGSRD 29645
17-03-18 06:27:22.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:22.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:22.044 -07 000000611 INF: FPGA: Recv ZSGSRD 29642
17-03-18 06:27:22.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:22.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:22.054 -07 000000579 INF: FPGA: Recv ZPIEZORD 25103
17-03-18 06:27:22.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:22.064 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -10.0 V.
17-03-18 06:27:22.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29647 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29646 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29642 (-130.0 uncal um), Max = 29655 (-130.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:27:22.064 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29647, posNoise = 8, negNoise = 5
17-03-18 06:27:22.064 -07 000000610 INF: Z Motor: After move to -0.130771, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:22.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:27:22.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:22.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:22.064 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:22.064 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:22.064 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:22.064 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:22.064 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:22.064 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:22.064 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:27:22.064 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:22.064 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:22.064 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:22.074 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:27:22.074 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:22.074 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:22.074 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:22.084 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:27:22.084 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:27:22.084 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:27:22.084 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:27:22.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28744 150\n [Camera]
17-03-18 06:27:22.284 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:22.744 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:27:22.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:27:22.744 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:22.744 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:27:22.744 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:22.744 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 06:27:22.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:27:22.744 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:22.754 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:22.754 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 06:27:22.934 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28744 844
17-03-18 06:27:23.084 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:23.144 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:27:23.144 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:27:23.144 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:23.144 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:27:23.144 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:27:23.144 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:23.154 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:23.154 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:27:23.154 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:23.154 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:27:23.304 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:27:23.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:27:23.304 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:23.304 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:23.304 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 06:27:23.304 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:27:23.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:27:23.314 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:23.314 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:23.314 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 06:27:23.414 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.988112,
17-03-18 06:27:23.494 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:27:23.494 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:23.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28744 150' command took 2 ms to send, 1408 ms to get response, and 1415 ms overall
17-03-18 06:27:23.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:23.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.130781969377922. ------
17-03-18 06:27:23.504 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:23.504 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13737 mm
17-03-18 06:27:23.504 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:23.644 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:23.644 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 141 ms overall
17-03-18 06:27:23.644 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:23.644 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:27:23.644 -07 000000461 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 06:27:23.644 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30009, sync = True, waitForSettling = False)
17-03-18 06:27:23.644 -07 000000462 INF: Z Motor: Moving to -0.137372 mm, started at -0.130782 mm, distance = -6.59 um
17-03-18 06:27:23.654 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:23.654 -07 000000579 INF: FPGA: Recv YRDPOS 131188
17-03-18 06:27:23.664 -07 000000462 INF: FPGA: Xmit ZDACW 30009\n [Z Motor]
17-03-18 06:27:23.664 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:27:23.664 -07 000000461 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:23.664 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:27:23.664 -07 000000461 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:23.664 -07 000000461 INF: Y Motor: Moving 1338 steps-13
17-03-18 06:27:23.674 -07 000000462 INF: FPGA: 'ZDACW 30009' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:27:23.674 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:23.674 -07 000000480 INF: FPGA: Recv ZDACR 30009
17-03-18 06:27:23.684 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:23.684 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:23.684 -07 000000462 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 06:27:23.714 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 407 ms.
17-03-18 06:27:23.714 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:27:23.714 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:23.714 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 410 ms.
17-03-18 06:27:23.714 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:27:23.714 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:23.724 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:23.724 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:27:23.724 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-18 06:27:23.724 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 06:27:23.844 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:23.844 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-18 06:27:24.054 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:27:24.054 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 06:27:24.104 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:24.114 -07 000000592 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:27:24.114 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 06:27:24.114 -07 000000461 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:24.114 -07 000000461 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:27:24.114 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.836 mm, average velocity = 2.134 mm/sec
17-03-18 06:27:25.064 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:25.064 -07 000000474 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:27:25.074 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:25.074 -07 000000461 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:25.104 -07 000000461 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:25.104 -07 000000461 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:27:25.104 -07 000000461 INF: Y Motor: Moved to 64.8779 after 1455 ms (table move)
17-03-18 06:27:25.104 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137372 mm (DAC = 30009)
17-03-18 06:27:25.104 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:25.104 -07 000000585 INF: FPGA: Recv ZSGSRD 30675
17-03-18 06:27:25.114 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:27:25.114 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:25.114 -07 000000480 INF: FPGA: Recv ZSGSRD 30669
17-03-18 06:27:25.124 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:25.124 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:25.124 -07 000000608 INF: FPGA: Recv ZSGSRD 30680
17-03-18 06:27:25.134 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:25.134 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:25.134 -07 000000467 INF: FPGA: Recv ZSGSRD 30683
17-03-18 06:27:25.144 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:25.144 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:25.144 -07 000000585 INF: FPGA: Recv ZSGSRD 30668
17-03-18 06:27:25.154 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:25.154 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:25.154 -07 000000611 INF: FPGA: Recv ZSGSRD 30672
17-03-18 06:27:25.164 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:25.164 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:25.164 -07 000000608 INF: FPGA: Recv ZSGSRD 30670
17-03-18 06:27:25.174 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:25.174 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:25.174 -07 000000461 INF: FPGA: Recv ZSGSRD 30673
17-03-18 06:27:25.184 -07 000000629 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:25.184 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:25.184 -07 000000502 INF: FPGA: Recv ZSGSRD 30674
17-03-18 06:27:25.194 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:25.194 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:25.194 -07 000000474 INF: FPGA: Recv ZSGSRD 30672
17-03-18 06:27:25.204 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:25.204 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:25.204 -07 000000501 INF: FPGA: Recv ZPIEZORD 26449
17-03-18 06:27:25.214 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:25.214 -07 000000629 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.579 V. Piezo Error = -9.3 V.
17-03-18 06:27:25.214 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30674 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30672 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30668 (-136.5 uncal um), Max = 30683 (-136.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:27:25.214 -07 000000629 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30674, posNoise = 9, negNoise = 6
17-03-18 06:27:25.214 -07 000000629 INF: Z Motor: After move to -0.137372, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:25.214 -07 000000629 INF: Z Motor: Settle wait time = 1458 ms, measure time = 106 ms (allowed 150 ms), total time = 1564 ms
17-03-18 06:27:25.214 -07 000000629 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:25.264 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1756 ms
17-03-18 06:27:25.264 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:25.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:25.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:25.264 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:25.264 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:25.264 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:25.264 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:25.264 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:27:25.264 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:25.274 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:25.274 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:25.284 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:27:25.284 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:27:25.284 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:25.334 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:25.634 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:25.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:25.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:25.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:27:25.664 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:25.674 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:25.674 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:27:25.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:27:25.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:25.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:27:25.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:27:25.774 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:25.774 -07 000000501 INF: Autofocus start
17-03-18 06:27:25.774 -07 000000501 INF: MeasureProfile start
17-03-18 06:27:25.774 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:25.784 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:25.784 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:25.784 -07 000000501 INF: MeasureProfile done
17-03-18 06:27:25.784 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:27:25.784 -07 000000501 INF: Autofocus finished
17-03-18 06:27:25.984 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:25.984 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:27:25.984 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.137379635247511. ----------
17-03-18 06:27:25.984 -07 000000610 INF: Cycle	149	Tile	7	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:25.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28516, sync = True, waitForSettling = True)
17-03-18 06:27:25.994 -07 000000610 INF: Z Motor: Moving to -0.130538 mm, started at -0.137380 mm, distance = 6.84 um
17-03-18 06:27:25.994 -07 000000610 INF: FPGA: Xmit ZDACW 28516\n [Z Motor]
17-03-18 06:27:25.994 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:27:26.004 -07 000000610 INF: FPGA: 'ZDACW 28516' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:26.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:26.004 -07 000000461 INF: FPGA: Recv ZDACR 28516
17-03-18 06:27:26.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:26.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:26.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:26.164 -07 000000501 INF: FPGA: Recv ZSGSRD 29609
17-03-18 06:27:26.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:26.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:26.174 -07 000000569 INF: FPGA: Recv ZSGSRD 29611
17-03-18 06:27:26.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:26.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:26.184 -07 000000592 INF: FPGA: Recv ZSGSRD 29616
17-03-18 06:27:26.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:26.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:26.194 -07 000000467 INF: FPGA: Recv ZSGSRD 29611
17-03-18 06:27:26.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:26.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:26.204 -07 000000501 INF: FPGA: Recv ZSGSRD 29610
17-03-18 06:27:26.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:26.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:26.214 -07 000000591 INF: FPGA: Recv ZSGSRD 29609
17-03-18 06:27:26.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:26.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:26.224 -07 000000462 INF: FPGA: Recv ZSGSRD 29609
17-03-18 06:27:26.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:26.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:26.234 -07 000000611 INF: FPGA: Recv ZSGSRD 29614
17-03-18 06:27:26.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:26.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:26.244 -07 000000585 INF: FPGA: Recv ZSGSRD 29612
17-03-18 06:27:26.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:26.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:26.254 -07 000000608 INF: FPGA: Recv ZSGSRD 29612
17-03-18 06:27:26.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:26.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:26.264 -07 000000629 INF: FPGA: Recv ZPIEZORD 25074
17-03-18 06:27:26.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:26.274 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -9.9 V.
17-03-18 06:27:26.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29611 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29611 (-129.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29609 (-129.8 uncal um), Max = 29616 (-129.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:27:26.274 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29611, posNoise = 5, negNoise = 2
17-03-18 06:27:26.274 -07 000000610 INF: Z Motor: After move to -0.130538, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:26.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:27:26.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:26.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:26.274 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:26.274 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:26.274 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:26.274 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:26.274 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:26.274 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:26.284 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 06:27:26.284 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:26.284 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:27:26.284 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:26.284 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:26.284 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:26.284 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:27:26.284 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:26.294 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:27:26.294 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:27:26.294 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:27:26.294 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:27:26.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28693 150\n [Camera]
17-03-18 06:27:26.494 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:26.864 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:27:26.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:27:26.954 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:27:26.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:27:26.954 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:26.964 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:27:26.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:27:26.964 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:26.964 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:26.964 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:27:26.964 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:26.964 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:27:27.144 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28693 844
17-03-18 06:27:27.294 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:27.334 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 06:27:27.334 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 06:27:27.334 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:27.334 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:27:27.334 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 06:27:27.334 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:27.344 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:27.344 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:27.344 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:27:27.344 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:27:27.514 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:27:27.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:27:27.524 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:27.524 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:27:27.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:27:27.524 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:27.654 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:27.654 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:27:27.654 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:27.654 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:27:27.714 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:27:27.714 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:27.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28693 150' command took 2 ms to send, 1411 ms to get response, and 1415 ms overall
17-03-18 06:27:27.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:27.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.130550697740819. ------
17-03-18 06:27:27.714 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:27.714 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13731 mm
17-03-18 06:27:27.714 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:27.714 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:27:27.714 -07 000000608 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 06:27:27.714 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:27.714 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29994, sync = True, waitForSettling = False)
17-03-18 06:27:27.714 -07 000000467 INF: Z Motor: Moving to -0.137304 mm, started at -0.130551 mm, distance = -6.75 um
17-03-18 06:27:27.724 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:27:27.724 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:27.724 -07 000000569 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:27:27.734 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:27.734 -07 000000608 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:27.734 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:27.734 -07 000000608 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:27.734 -07 000000608 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:27:27.744 -07 000000467 INF: FPGA: Xmit ZDACW 29994\n [Z Motor]
17-03-18 06:27:27.744 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:27:27.754 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:27.754 -07 000000467 INF: FPGA: 'ZDACW 29994' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:27:27.764 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:27.764 -07 000000592 INF: FPGA: Recv ZDACR 29994
17-03-18 06:27:27.774 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:27:27.774 -07 000000467 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 06:27:27.934 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:27.934 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 06:27:28.034 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 06:27:28.034 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:27:28.044 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:28.044 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:28.044 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:27:28.044 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:27:28.044 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:28.044 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-18 06:27:28.054 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:28.054 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 532 ms.
17-03-18 06:27:28.134 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:27:28.134 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 392 ms overall
17-03-18 06:27:28.184 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:28.184 -07 000000591 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:27:28.194 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:27:28.194 -07 000000608 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:28.194 -07 000000608 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 06:27:28.194 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.149 mm/sec
17-03-18 06:27:28.784 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.99219,
17-03-18 06:27:29.144 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:29.144 -07 000000591 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:27:29.154 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:29.154 -07 000000608 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:29.194 -07 000000608 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:29.194 -07 000000608 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:27:29.194 -07 000000608 INF: Y Motor: Moved to 65.7134 after 1479 ms (table move)
17-03-18 06:27:29.204 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137304 mm (DAC = 29994)
17-03-18 06:27:29.204 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:29.204 -07 000000501 INF: FPGA: Recv ZSGSRD 30669
17-03-18 06:27:29.214 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:27:29.214 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:29.214 -07 000000502 INF: FPGA: Recv ZSGSRD 30663
17-03-18 06:27:29.224 -07 000000629 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:29.224 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:29.224 -07 000000467 INF: FPGA: Recv ZSGSRD 30666
17-03-18 06:27:29.234 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:29.234 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:29.234 -07 000000579 INF: FPGA: Recv ZSGSRD 30663
17-03-18 06:27:29.244 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:29.244 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:29.244 -07 000000467 INF: FPGA: Recv ZSGSRD 30661
17-03-18 06:27:29.254 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:29.254 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:29.254 -07 000000461 INF: FPGA: Recv ZSGSRD 30656
17-03-18 06:27:29.264 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:29.264 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:29.264 -07 000000591 INF: FPGA: Recv ZSGSRD 30660
17-03-18 06:27:29.274 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:29.274 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:29.274 -07 000000592 INF: FPGA: Recv ZSGSRD 30658
17-03-18 06:27:29.284 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:29.284 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:29.284 -07 000000467 INF: FPGA: Recv ZSGSRD 30659
17-03-18 06:27:29.294 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:29.294 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:29.294 -07 000000579 INF: FPGA: Recv ZSGSRD 30669
17-03-18 06:27:29.304 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:29.304 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:29.304 -07 000000569 INF: FPGA: Recv ZPIEZORD 26470
17-03-18 06:27:29.314 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:29.314 -07 000000629 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -9.2 V.
17-03-18 06:27:29.314 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30662 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30662 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30656 (-136.5 uncal um), Max = 30669 (-136.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:27:29.314 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30662, posNoise = 7, negNoise = 6
17-03-18 06:27:29.314 -07 000000629 INF: Z Motor: After move to -0.137304, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:29.314 -07 000000629 INF: Z Motor: Settle wait time = 1482 ms, measure time = 109 ms (allowed 150 ms), total time = 1591 ms
17-03-18 06:27:29.314 -07 000000629 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:29.364 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1643 ms
17-03-18 06:27:29.364 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:29.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:29.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:29.364 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:29.364 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:29.364 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:29.364 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:29.364 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:29.364 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:29.374 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:29.374 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:29.374 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:27:29.374 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:27:29.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:29.424 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:29.724 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:29.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:29.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:29.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:27:29.764 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:29.764 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:29.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:27:29.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:27:29.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:29.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:27:29.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:27:29.864 -07 000000474 INF: Autofocus start
17-03-18 06:27:29.864 -07 000000474 INF: MeasureProfile start
17-03-18 06:27:29.864 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:29.864 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:29.874 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:27:29.874 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:29.874 -07 000000474 INF: MeasureProfile done
17-03-18 06:27:29.874 -07 000000474 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:27:29.874 -07 000000474 INF: Autofocus finished
17-03-18 06:27:30.074 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:30.074 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:27:30.074 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137302544701809. ----------
17-03-18 06:27:30.074 -07 000000610 INF: Cycle	149	Tile	8	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:30.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28502, sync = True, waitForSettling = True)
17-03-18 06:27:30.084 -07 000000610 INF: Z Motor: Moving to -0.130474 mm, started at -0.137303 mm, distance = 6.83 um
17-03-18 06:27:30.084 -07 000000610 INF: FPGA: Xmit ZDACW 28502\n [Z Motor]
17-03-18 06:27:30.084 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:27:30.094 -07 000000610 INF: FPGA: 'ZDACW 28502' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:27:30.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:30.094 -07 000000501 INF: FPGA: Recv ZDACR 28502
17-03-18 06:27:30.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:30.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:30.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:30.254 -07 000000502 INF: FPGA: Recv ZSGSRD 29596
17-03-18 06:27:30.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:30.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:30.264 -07 000000569 INF: FPGA: Recv ZSGSRD 29600
17-03-18 06:27:30.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:30.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:30.274 -07 000000591 INF: FPGA: Recv ZSGSRD 29599
17-03-18 06:27:30.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:30.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:30.284 -07 000000501 INF: FPGA: Recv ZSGSRD 29597
17-03-18 06:27:30.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:30.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:30.294 -07 000000502 INF: FPGA: Recv ZSGSRD 29601
17-03-18 06:27:30.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:30.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:30.304 -07 000000474 INF: FPGA: Recv ZSGSRD 29604
17-03-18 06:27:30.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:30.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:30.314 -07 000000591 INF: FPGA: Recv ZSGSRD 29598
17-03-18 06:27:30.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:27:30.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:30.324 -07 000000501 INF: FPGA: Recv ZSGSRD 29601
17-03-18 06:27:30.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:30.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:30.334 -07 000000467 INF: FPGA: Recv ZSGSRD 29605
17-03-18 06:27:30.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:30.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:30.344 -07 000000592 INF: FPGA: Recv ZSGSRD 29602
17-03-18 06:27:30.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:30.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:30.354 -07 000000591 INF: FPGA: Recv ZPIEZORD 25073
17-03-18 06:27:30.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:30.364 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -9.9 V.
17-03-18 06:27:30.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29600 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29600 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29596 (-129.7 uncal um), Max = 29605 (-129.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:27:30.364 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29600, posNoise = 5, negNoise = 4
17-03-18 06:27:30.364 -07 000000610 INF: Z Motor: After move to -0.130474, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:30.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:27:30.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:30.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:30.364 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:30.364 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:30.364 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:30.364 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:30.364 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:30.364 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:30.374 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:30.374 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:30.374 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:27:30.374 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:30.374 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:30.374 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:30.374 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:27:30.374 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:30.384 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:27:30.384 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:27:30.384 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:27:30.384 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:27:30.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28678 150\n [Camera]
17-03-18 06:27:30.584 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:31.044 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:27:31.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:27:31.044 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:31.044 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:27:31.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:27:31.054 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:31.054 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:31.054 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:27:31.054 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:31.054 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:27:31.234 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28678 844
17-03-18 06:27:31.384 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:31.434 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:27:31.434 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:27:31.434 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:31.434 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:31.434 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:27:31.434 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:27:31.434 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:31.444 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:31.444 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:27:31.444 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:27:31.614 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:27:31.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:27:31.614 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:31.614 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:31.614 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:27:31.614 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:27:31.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:27:31.614 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:31.614 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:31.614 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 06:27:31.804 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:27:31.804 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:31.804 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28678 150' command took 2 ms to send, 1402 ms to get response, and 1414 ms overall
17-03-18 06:27:31.804 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:31.804 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130480031407259. ------
17-03-18 06:27:31.804 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13682 mm
17-03-18 06:27:31.804 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:31.804 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:31.814 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:31.814 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:27:31.814 -07 000000501 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 06:27:31.814 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:31.814 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29887, sync = True, waitForSettling = False)
17-03-18 06:27:31.814 -07 000000474 INF: Z Motor: Moving to -0.136814 mm, started at -0.130480 mm, distance = -6.33 um
17-03-18 06:27:31.814 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:27:31.814 -07 000000502 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:27:31.824 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:27:31.824 -07 000000501 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:31.824 -07 000000501 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:31.824 -07 000000501 INF: Y Motor: Moving 1343 steps-19
17-03-18 06:27:31.824 -07 000000474 INF: FPGA: Xmit ZDACW 29887\n [Z Motor]
17-03-18 06:27:31.824 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:27:31.834 -07 000000474 INF: FPGA: 'ZDACW 29887' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:27:31.834 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:31.844 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:31.854 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:31.854 -07 000000579 INF: FPGA: Recv ZDACR 29887
17-03-18 06:27:31.864 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:27:31.864 -07 000000474 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 06:27:31.864 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:27:31.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:27:32.014 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:27:32.014 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:27:32.014 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:32.014 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:27:32.014 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:27:32.014 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:32.014 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:32.024 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:27:32.024 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:27:32.024 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:27:32.034 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:32.034 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-18 06:27:32.214 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 06:27:32.214 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:27:32.264 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:32.274 -07 000000579 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:27:32.284 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:32.284 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:32.284 -07 000000501 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:27:32.284 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 06:27:33.234 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:33.234 -07 000000579 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:27:33.244 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:33.244 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:33.274 -07 000000501 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:33.274 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:27:33.274 -07 000000501 INF: Y Motor: Moved to 66.5386 after 1463 ms (table move)
17-03-18 06:27:33.274 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136814 mm (DAC = 29887)
17-03-18 06:27:33.274 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:33.284 -07 000000474 INF: FPGA: Recv ZSGSRD 30588
17-03-18 06:27:33.284 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:27:33.284 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:33.284 -07 000000579 INF: FPGA: Recv ZSGSRD 30593
17-03-18 06:27:33.294 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:27:33.294 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:33.294 -07 000000608 INF: FPGA: Recv ZSGSRD 30590
17-03-18 06:27:33.304 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:33.304 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:33.304 -07 000000502 INF: FPGA: Recv ZSGSRD 30578
17-03-18 06:27:33.314 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:33.314 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:33.314 -07 000000474 INF: FPGA: Recv ZSGSRD 30585
17-03-18 06:27:33.324 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:33.324 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:33.324 -07 000000437 INF: FPGA: Recv ZSGSRD 30588
17-03-18 06:27:33.334 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:33.334 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:33.334 -07 000000608 INF: FPGA: Recv ZSGSRD 30589
17-03-18 06:27:33.344 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:33.344 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:33.344 -07 000000474 INF: FPGA: Recv ZSGSRD 30586
17-03-18 06:27:33.354 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:33.354 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:33.354 -07 000000461 INF: FPGA: Recv ZSGSRD 30591
17-03-18 06:27:33.364 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:33.364 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:33.364 -07 000000608 INF: FPGA: Recv ZSGSRD 30592
17-03-18 06:27:33.374 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:33.374 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:33.374 -07 000000629 INF: FPGA: Recv ZPIEZORD 26374
17-03-18 06:27:33.384 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:33.384 -07 000000611 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.3 V.
17-03-18 06:27:33.384 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30588 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30588 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30578 (-136.0 uncal um), Max = 30593 (-136.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:27:33.384 -07 000000611 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30588, posNoise = 5, negNoise = 10
17-03-18 06:27:33.384 -07 000000611 INF: Z Motor: After move to -0.136814, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:33.384 -07 000000611 INF: Z Motor: Settle wait time = 1465 ms, measure time = 104 ms (allowed 150 ms), total time = 1569 ms
17-03-18 06:27:33.384 -07 000000611 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:33.434 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 06:27:33.434 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:33.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:33.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:33.434 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:33.434 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:33.434 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:33.434 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:33.434 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:33.434 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:33.444 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:33.444 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:33.454 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-18 06:27:33.454 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:27:33.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:33.504 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:33.804 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:33.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:33.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:33.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1082280040, 0x0, 559484976) start.
17-03-18 06:27:33.844 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:33.844 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:33.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 06:27:33.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1082280040, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:27:33.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:33.924 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:27:33.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:27:33.944 -07 000000474 INF: Autofocus start
17-03-18 06:27:33.944 -07 000000474 INF: MeasureProfile start
17-03-18 06:27:33.944 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:33.944 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:33.954 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:33.954 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:33.954 -07 000000474 INF: MeasureProfile done
17-03-18 06:27:33.954 -07 000000474 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:27:33.954 -07 000000474 INF: Autofocus finished
17-03-18 06:27:34.154 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.014009,
17-03-18 06:27:34.164 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:34.164 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 202 ms to get response, and 212 ms overall
17-03-18 06:27:34.164 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.136827153003319. ----------
17-03-18 06:27:34.164 -07 000000610 INF: Cycle	149	Tile	9	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:34.164 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28382, sync = True, waitForSettling = True)
17-03-18 06:27:34.164 -07 000000610 INF: Z Motor: Moving to -0.129924 mm, started at -0.136827 mm, distance = 6.90 um
17-03-18 06:27:34.194 -07 000000610 INF: FPGA: Xmit ZDACW 28382\n [Z Motor]
17-03-18 06:27:34.194 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:27:34.204 -07 000000610 INF: FPGA: 'ZDACW 28382' command took 1 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:27:34.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:34.204 -07 000000611 INF: FPGA: Recv ZDACR 28382
17-03-18 06:27:34.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:34.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:34.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:34.364 -07 000000437 INF: FPGA: Recv ZSGSRD 29510
17-03-18 06:27:34.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:34.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:34.374 -07 000000467 INF: FPGA: Recv ZSGSRD 29516
17-03-18 06:27:34.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:34.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:34.384 -07 000000461 INF: FPGA: Recv ZSGSRD 29515
17-03-18 06:27:34.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:34.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:34.394 -07 000000437 INF: FPGA: Recv ZSGSRD 29513
17-03-18 06:27:34.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:34.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:34.404 -07 000000461 INF: FPGA: Recv ZSGSRD 29513
17-03-18 06:27:34.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:34.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:34.414 -07 000000467 INF: FPGA: Recv ZSGSRD 29508
17-03-18 06:27:34.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:34.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:34.424 -07 000000437 INF: FPGA: Recv ZSGSRD 29517
17-03-18 06:27:34.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:34.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:34.434 -07 000000467 INF: FPGA: Recv ZSGSRD 29513
17-03-18 06:27:34.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:34.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:34.444 -07 000000461 INF: FPGA: Recv ZSGSRD 29515
17-03-18 06:27:34.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:34.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:34.454 -07 000000437 INF: FPGA: Recv ZSGSRD 29514
17-03-18 06:27:34.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:34.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:34.474 -07 000000437 INF: FPGA: Recv ZPIEZORD 24978
17-03-18 06:27:34.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:27:34.484 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.9 V.
17-03-18 06:27:34.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29513 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29514 (-129.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29508 (-129.1 uncal um), Max = 29517 (-129.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:27:34.484 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29513, posNoise = 4, negNoise = 5
17-03-18 06:27:34.484 -07 000000610 INF: Z Motor: After move to -0.129924, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:34.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 311 ms)
17-03-18 06:27:34.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:34.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:34.484 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:34.484 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:34.484 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:34.484 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:34.484 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:34.484 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:34.484 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:27:34.484 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:27:34.484 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:34.484 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:34.494 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:34.494 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:34.494 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:27:34.494 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:34.504 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:27:34.504 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:27:34.504 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:27:34.504 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:27:34.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28559 150\n [Camera]
17-03-18 06:27:34.704 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:35.164 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:27:35.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:27:35.174 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:35.174 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:35.174 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:27:35.174 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:27:35.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:27:35.174 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:35.174 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:35.174 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:27:35.364 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28559 844
17-03-18 06:27:35.514 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:35.554 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:27:35.554 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:27:35.554 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:35.554 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:27:35.554 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:27:35.554 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:35.554 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:35.554 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:27:35.554 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:35.564 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:27:35.734 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:27:35.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:27:35.734 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:35.854 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:27:35.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:27:35.854 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:35.854 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:35.854 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:27:35.864 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:35.864 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 06:27:35.924 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1409
17-03-18 06:27:35.924 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:35.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28559 150' command took 2 ms to send, 1407 ms to get response, and 1422 ms overall
17-03-18 06:27:35.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:35.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.129921124950926. ------
17-03-18 06:27:35.934 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:35.934 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13664 mm
17-03-18 06:27:35.934 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:35.934 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:27:35.934 -07 000000461 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 06:27:35.934 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:35.934 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 29850, sync = True, waitForSettling = False)
17-03-18 06:27:35.934 -07 000000611 INF: Z Motor: Moving to -0.136645 mm, started at -0.129921 mm, distance = -6.72 um
17-03-18 06:27:35.944 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:27:35.944 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:35.944 -07 000000474 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:27:35.954 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:27:35.954 -07 000000461 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:35.954 -07 000000461 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:35.954 -07 000000461 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:27:35.954 -07 000000611 INF: FPGA: Xmit ZDACW 29850\n [Z Motor]
17-03-18 06:27:35.954 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:27:35.964 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:35.964 -07 000000611 INF: FPGA: 'ZDACW 29850' command took 3 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:27:35.974 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:35.984 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:35.984 -07 000000467 INF: FPGA: Recv ZDACR 29850
17-03-18 06:27:35.994 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:27:35.994 -07 000000611 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:27:36.164 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:36.164 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:27:36.244 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 06:27:36.244 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:27:36.244 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:36.244 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:36.254 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:27:36.254 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:27:36.254 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:36.254 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:36.254 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 06:27:36.254 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:27:36.344 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 06:27:36.344 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:27:36.394 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:36.404 -07 000000608 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:27:36.404 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:27:36.404 -07 000000461 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:36.404 -07 000000461 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 06:27:36.404 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 06:27:36.864 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:27:36.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:27:37.354 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:37.354 -07 000000611 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:27:37.364 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:37.364 -07 000000461 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:37.394 -07 000000461 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:37.394 -07 000000461 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:27:37.394 -07 000000461 INF: Y Motor: Moved to 67.3716 after 1456 ms (table move)
17-03-18 06:27:37.394 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136645 mm (DAC = 29850)
17-03-18 06:27:37.394 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:37.394 -07 000000461 INF: FPGA: Recv ZSGSRD 30563
17-03-18 06:27:37.404 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:27:37.404 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:37.404 -07 000000461 INF: FPGA: Recv ZSGSRD 30565
17-03-18 06:27:37.414 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:37.414 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:37.414 -07 000000611 INF: FPGA: Recv ZSGSRD 30563
17-03-18 06:27:37.424 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:37.424 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:37.424 -07 000000569 INF: FPGA: Recv ZSGSRD 30562
17-03-18 06:27:37.434 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:37.434 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:37.434 -07 000000569 INF: FPGA: Recv ZSGSRD 30555
17-03-18 06:27:37.444 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:37.444 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:37.444 -07 000000462 INF: FPGA: Recv ZSGSRD 30557
17-03-18 06:27:37.454 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:37.454 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:37.454 -07 000000462 INF: FPGA: Recv ZSGSRD 30562
17-03-18 06:27:37.464 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:37.464 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:37.464 -07 000000611 INF: FPGA: Recv ZSGSRD 30570
17-03-18 06:27:37.474 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:37.474 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:37.474 -07 000000611 INF: FPGA: Recv ZSGSRD 30557
17-03-18 06:27:37.484 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:37.484 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:37.484 -07 000000611 INF: FPGA: Recv ZSGSRD 30573
17-03-18 06:27:37.494 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:37.494 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:37.494 -07 000000611 INF: FPGA: Recv ZPIEZORD 26370
17-03-18 06:27:37.504 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:37.504 -07 000000592 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.555 V. Piezo Error = -9.2 V.
17-03-18 06:27:37.504 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30563 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30562 (-135.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30555 (-135.8 uncal um), Max = 30573 (-135.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:27:37.504 -07 000000592 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30563, posNoise = 10, negNoise = 8
17-03-18 06:27:37.504 -07 000000592 INF: Z Motor: After move to -0.136645, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:37.504 -07 000000592 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-18 06:27:37.504 -07 000000592 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:37.554 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 06:27:37.554 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:37.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:37.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:37.554 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:37.554 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:37.554 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:37.554 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:37.554 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:37.554 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:37.564 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:37.564 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:37.574 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:27:37.574 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:27:37.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:37.624 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:37.924 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:37.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:37.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:37.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 06:27:37.964 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:37.964 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:37.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:27:38.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:27:38.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:38.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:27:38.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:27:38.064 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:38.064 -07 000000592 INF: Autofocus start
17-03-18 06:27:38.064 -07 000000592 INF: MeasureProfile start
17-03-18 06:27:38.064 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:38.074 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:27:38.074 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:38.074 -07 000000592 INF: MeasureProfile done
17-03-18 06:27:38.074 -07 000000592 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:27:38.074 -07 000000592 INF: Autofocus finished
17-03-18 06:27:38.274 -07 000000474 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:38.274 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:27:38.274 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.136666547699775. ----------
17-03-18 06:27:38.274 -07 000000610 INF: Cycle	149	Tile	10	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:38.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28391, sync = True, waitForSettling = True)
17-03-18 06:27:38.284 -07 000000610 INF: Z Motor: Moving to -0.129966 mm, started at -0.136667 mm, distance = 6.70 um
17-03-18 06:27:38.284 -07 000000610 INF: FPGA: Xmit ZDACW 28391\n [Z Motor]
17-03-18 06:27:38.284 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:27:38.294 -07 000000610 INF: FPGA: 'ZDACW 28391' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:38.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:38.294 -07 000000437 INF: FPGA: Recv ZDACR 28391
17-03-18 06:27:38.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:38.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:38.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:38.454 -07 000000462 INF: FPGA: Recv ZSGSRD 29522
17-03-18 06:27:38.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:38.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:38.464 -07 000000437 INF: FPGA: Recv ZSGSRD 29525
17-03-18 06:27:38.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:38.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:38.474 -07 000000591 INF: FPGA: Recv ZSGSRD 29513
17-03-18 06:27:38.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:38.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:38.484 -07 000000462 INF: FPGA: Recv ZSGSRD 29519
17-03-18 06:27:38.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:38.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:38.494 -07 000000437 INF: FPGA: Recv ZSGSRD 29516
17-03-18 06:27:38.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:38.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:38.504 -07 000000592 INF: FPGA: Recv ZSGSRD 29521
17-03-18 06:27:38.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:38.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:38.514 -07 000000462 INF: FPGA: Recv ZSGSRD 29519
17-03-18 06:27:38.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:38.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:38.524 -07 000000591 INF: FPGA: Recv ZSGSRD 29522
17-03-18 06:27:38.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:38.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:38.534 -07 000000592 INF: FPGA: Recv ZSGSRD 29522
17-03-18 06:27:38.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:38.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:38.544 -07 000000591 INF: FPGA: Recv ZSGSRD 29520
17-03-18 06:27:38.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:38.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:38.554 -07 000000437 INF: FPGA: Recv ZPIEZORD 25011
17-03-18 06:27:38.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:38.564 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.332 V. Piezo Error = -9.9 V.
17-03-18 06:27:38.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29520 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29520 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29513 (-129.1 uncal um), Max = 29525 (-129.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:27:38.564 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29520, posNoise = 5, negNoise = 7
17-03-18 06:27:38.564 -07 000000610 INF: Z Motor: After move to -0.129966, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:38.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:27:38.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:38.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:38.564 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:38.564 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:38.564 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:38.564 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:38.564 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:38.564 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:38.564 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:27:38.564 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:38.564 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:38.564 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:38.574 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:27:38.574 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:38.574 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:38.574 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:38.584 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:27:38.584 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:27:38.584 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:27:38.584 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:27:38.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28567 150\n [Camera]
17-03-18 06:27:38.784 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:39.244 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:27:39.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:27:39.244 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:39.244 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:27:39.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:27:39.254 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:39.254 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:27:39.254 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:39.264 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:39.264 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:27:39.434 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28567 844
17-03-18 06:27:39.544 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.994908,
17-03-18 06:27:39.584 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:39.624 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:27:39.624 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:27:39.624 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:39.634 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:39.634 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:27:39.634 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 06:27:39.634 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 06:27:39.634 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:39.634 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:39.644 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:27:39.804 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:27:39.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:27:39.804 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:39.924 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:27:39.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:27:39.934 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:39.934 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:27:39.934 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:39.934 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:39.934 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 06:27:39.994 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:27:39.994 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:39.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28567 150' command took 2 ms to send, 1409 ms to get response, and 1414 ms overall
17-03-18 06:27:40.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:40.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.129966094435918. ------
17-03-18 06:27:40.004 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13641 mm
17-03-18 06:27:40.004 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:40.004 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:40.004 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:27:40.004 -07 000000462 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 06:27:40.004 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29799, sync = True, waitForSettling = False)
17-03-18 06:27:40.004 -07 000000569 INF: Z Motor: Moving to -0.136411 mm, started at -0.129966 mm, distance = -6.44 um
17-03-18 06:27:40.004 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:40.014 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:27:40.014 -07 000000569 INF: FPGA: Xmit ZDACW 29799\n [Z Motor]
17-03-18 06:27:40.014 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:27:40.024 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:40.024 -07 000000569 INF: FPGA: 'ZDACW 29799' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:27:40.024 -07 000000611 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:27:40.034 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:40.034 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:27:40.034 -07 000000462 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:40.034 -07 000000462 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:40.034 -07 000000462 INF: Y Motor: Moving 1346 steps-24
17-03-18 06:27:40.044 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:40.044 -07 000000591 INF: FPGA: Recv ZDACR 29799
17-03-18 06:27:40.054 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:40.054 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:27:40.054 -07 000000569 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 06:27:40.234 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:40.234 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:27:40.324 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:27:40.334 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:27:40.334 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:40.334 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:27:40.334 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:27:40.334 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:40.334 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:40.334 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:40.334 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-18 06:27:40.344 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:27:40.424 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 06:27:40.424 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:27:40.474 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:40.484 -07 000000591 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:27:40.494 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:40.494 -07 000000462 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:40.494 -07 000000462 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 06:27:40.494 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.129 mm/sec
17-03-18 06:27:41.444 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:41.444 -07 000000611 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:27:41.454 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:41.454 -07 000000462 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:41.484 -07 000000462 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:41.484 -07 000000462 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:27:41.484 -07 000000462 INF: Y Motor: Moved to 68.2046 after 1474 ms (table move)
17-03-18 06:27:41.484 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136411 mm (DAC = 29799)
17-03-18 06:27:41.484 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:41.494 -07 000000474 INF: FPGA: Recv ZSGSRD 30526
17-03-18 06:27:41.494 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:27:41.494 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:41.494 -07 000000629 INF: FPGA: Recv ZSGSRD 30531
17-03-18 06:27:41.504 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:41.504 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:41.504 -07 000000569 INF: FPGA: Recv ZSGSRD 30518
17-03-18 06:27:41.514 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:41.514 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:41.514 -07 000000592 INF: FPGA: Recv ZSGSRD 30516
17-03-18 06:27:41.524 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:41.524 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:41.524 -07 000000474 INF: FPGA: Recv ZSGSRD 30526
17-03-18 06:27:41.534 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:41.534 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:41.534 -07 000000591 INF: FPGA: Recv ZSGSRD 30522
17-03-18 06:27:41.544 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:41.544 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:41.544 -07 000000569 INF: FPGA: Recv ZSGSRD 30529
17-03-18 06:27:41.554 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:41.554 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:41.554 -07 000000591 INF: FPGA: Recv ZSGSRD 30524
17-03-18 06:27:41.564 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:41.564 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:41.564 -07 000000592 INF: FPGA: Recv ZSGSRD 30528
17-03-18 06:27:41.574 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:41.574 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:41.574 -07 000000474 INF: FPGA: Recv ZSGSRD 30523
17-03-18 06:27:41.584 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:41.584 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:41.584 -07 000000462 INF: FPGA: Recv ZPIEZORD 26306
17-03-18 06:27:41.594 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:41.594 -07 000000467 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.3 V.
17-03-18 06:27:41.594 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30524 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30525 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30516 (-135.6 uncal um), Max = 30531 (-135.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:27:41.594 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30524, posNoise = 7, negNoise = 8
17-03-18 06:27:41.594 -07 000000467 INF: Z Motor: After move to -0.136411, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:41.594 -07 000000467 INF: Z Motor: Settle wait time = 1479 ms, measure time = 103 ms (allowed 150 ms), total time = 1582 ms
17-03-18 06:27:41.594 -07 000000467 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:41.644 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 06:27:41.644 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:41.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:41.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:41.644 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:41.644 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:41.644 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:41.644 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:41.654 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:41.654 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:41.654 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:41.654 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:41.664 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:27:41.664 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:27:41.674 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:41.714 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:41.864 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:27:41.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:27:42.014 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:42.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:42.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:42.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) start.
17-03-18 06:27:42.054 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:42.054 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:42.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:27:42.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1147047128, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:27:42.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:42.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:27:42.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:27:42.154 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:42.154 -07 000000467 INF: Autofocus start
17-03-18 06:27:42.154 -07 000000467 INF: MeasureProfile start
17-03-18 06:27:42.164 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:42.164 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 06:27:42.164 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:42.164 -07 000000467 INF: MeasureProfile done
17-03-18 06:27:42.164 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:27:42.164 -07 000000467 INF: Autofocus finished
17-03-18 06:27:42.364 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:42.364 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:27:42.364 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.136416003426246. ----------
17-03-18 06:27:42.374 -07 000000610 INF: Cycle	149	Tile	11	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:42.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28323, sync = True, waitForSettling = True)
17-03-18 06:27:42.374 -07 000000610 INF: Z Motor: Moving to -0.129654 mm, started at -0.136416 mm, distance = 6.76 um
17-03-18 06:27:42.374 -07 000000610 INF: FPGA: Xmit ZDACW 28323\n [Z Motor]
17-03-18 06:27:42.374 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:27:42.384 -07 000000610 INF: FPGA: 'ZDACW 28323' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:42.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:42.384 -07 000000461 INF: FPGA: Recv ZDACR 28323
17-03-18 06:27:42.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:42.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:42.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:42.544 -07 000000462 INF: FPGA: Recv ZSGSRD 29478
17-03-18 06:27:42.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:42.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:42.554 -07 000000467 INF: FPGA: Recv ZSGSRD 29471
17-03-18 06:27:42.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:42.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:42.564 -07 000000474 INF: FPGA: Recv ZSGSRD 29471
17-03-18 06:27:42.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:42.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:42.574 -07 000000461 INF: FPGA: Recv ZSGSRD 29468
17-03-18 06:27:42.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:42.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:42.584 -07 000000592 INF: FPGA: Recv ZSGSRD 29477
17-03-18 06:27:42.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:42.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:42.594 -07 000000461 INF: FPGA: Recv ZSGSRD 29469
17-03-18 06:27:42.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:42.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:42.604 -07 000000474 INF: FPGA: Recv ZSGSRD 29477
17-03-18 06:27:42.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:42.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:42.614 -07 000000591 INF: FPGA: Recv ZSGSRD 29475
17-03-18 06:27:42.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:42.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:42.624 -07 000000467 INF: FPGA: Recv ZSGSRD 29470
17-03-18 06:27:42.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:42.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:42.634 -07 000000569 INF: FPGA: Recv ZSGSRD 29475
17-03-18 06:27:42.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:42.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:42.644 -07 000000629 INF: FPGA: Recv ZPIEZORD 24945
17-03-18 06:27:42.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:42.654 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -9.9 V.
17-03-18 06:27:42.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29473 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29473 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29468 (-128.9 uncal um), Max = 29478 (-128.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:27:42.654 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29473, posNoise = 5, negNoise = 5
17-03-18 06:27:42.654 -07 000000610 INF: Z Motor: After move to -0.129654, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:42.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:27:42.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:42.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:42.654 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:42.654 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:42.654 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:42.654 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:42.654 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:42.654 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:42.654 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:42.654 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:42.654 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:27:42.654 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:42.664 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:27:42.664 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:42.664 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:42.664 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:42.674 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:27:42.674 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:27:42.674 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:27:42.674 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:27:42.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28500 150\n [Camera]
17-03-18 06:27:42.874 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:43.334 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:27:43.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:27:43.334 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:43.334 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:43.334 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:27:43.334 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:27:43.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:27:43.334 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:43.334 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:43.334 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:27:43.524 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28500 844
17-03-18 06:27:43.674 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:43.714 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:27:43.714 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:27:43.714 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:43.714 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:43.714 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:27:43.714 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:27:43.714 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:43.714 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:43.714 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:27:43.724 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:27:43.894 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:27:43.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:27:43.894 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:43.894 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:27:43.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:27:43.894 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:43.894 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:27:43.894 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:43.894 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:43.904 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:27:44.084 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:27:44.084 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:44.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28500 150' command took 2 ms to send, 1407 ms to get response, and 1414 ms overall
17-03-18 06:27:44.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:44.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.129664156465256. ------
17-03-18 06:27:44.094 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:44.094 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13629 mm
17-03-18 06:27:44.094 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:44.204 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:44.204 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-18 06:27:44.204 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:44.204 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29773, sync = True, waitForSettling = False)
17-03-18 06:27:44.204 -07 000000591 INF: Z Motor: Moving to -0.136292 mm, started at -0.129664 mm, distance = -6.63 um
17-03-18 06:27:44.204 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:27:44.204 -07 000000462 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 06:27:44.214 -07 000000591 INF: FPGA: Xmit ZDACW 29773\n [Z Motor]
17-03-18 06:27:44.214 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:27:44.224 -07 000000591 INF: FPGA: 'ZDACW 29773' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:27:44.224 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:44.224 -07 000000585 INF: FPGA: Recv ZDACR 29773
17-03-18 06:27:44.234 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:44.234 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:44.234 -07 000000591 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 06:27:44.234 -07 000000569 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:27:44.244 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:27:44.244 -07 000000462 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:44.244 -07 000000462 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:44.244 -07 000000462 INF: Y Motor: Moving 1341 steps-16
17-03-18 06:27:44.244 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:44.294 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:27:44.294 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:27:44.294 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:44.294 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:27:44.294 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:27:44.294 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:44.294 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:44.304 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:44.304 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:27:44.304 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:27:44.414 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:44.414 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-18 06:27:44.614 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:27:44.614 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 06:27:44.674 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:44.674 -07 000000474 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:27:44.684 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:27:44.684 -07 000000462 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:44.684 -07 000000462 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 06:27:44.684 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.838 mm, average velocity = 2.211 mm/sec
17-03-18 06:27:44.914 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.009895,
17-03-18 06:27:45.634 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:45.634 -07 000000461 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:27:45.644 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:45.644 -07 000000462 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:45.674 -07 000000462 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:45.674 -07 000000462 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:27:45.674 -07 000000462 INF: Y Motor: Moved to 69.0264 after 1463 ms (table move)
17-03-18 06:27:45.674 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136292 mm (DAC = 29773)
17-03-18 06:27:45.674 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:45.674 -07 000000569 INF: FPGA: Recv ZSGSRD 30511
17-03-18 06:27:45.684 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:27:45.684 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:45.684 -07 000000462 INF: FPGA: Recv ZSGSRD 30501
17-03-18 06:27:45.694 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:45.694 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:45.694 -07 000000569 INF: FPGA: Recv ZSGSRD 30504
17-03-18 06:27:45.704 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:45.704 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:45.704 -07 000000462 INF: FPGA: Recv ZSGSRD 30501
17-03-18 06:27:45.714 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:45.714 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:45.714 -07 000000461 INF: FPGA: Recv ZSGSRD 30503
17-03-18 06:27:45.724 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:45.724 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:45.724 -07 000000569 INF: FPGA: Recv ZSGSRD 30505
17-03-18 06:27:45.734 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:45.734 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:45.734 -07 000000592 INF: FPGA: Recv ZSGSRD 30512
17-03-18 06:27:45.744 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:45.744 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:45.744 -07 000000608 INF: FPGA: Recv ZSGSRD 30507
17-03-18 06:27:45.754 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:45.754 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:45.754 -07 000000462 INF: FPGA: Recv ZSGSRD 30504
17-03-18 06:27:45.764 -07 000000611 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:45.764 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:45.764 -07 000000585 INF: FPGA: Recv ZSGSRD 30505
17-03-18 06:27:45.774 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:45.774 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:45.774 -07 000000467 INF: FPGA: Recv ZPIEZORD 26300
17-03-18 06:27:45.784 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:45.784 -07 000000611 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.543 V. Piezo Error = -9.2 V.
17-03-18 06:27:45.784 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30505 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30504 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30501 (-135.5 uncal um), Max = 30512 (-135.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:27:45.784 -07 000000611 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30505, posNoise = 7, negNoise = 4
17-03-18 06:27:45.784 -07 000000611 INF: Z Motor: After move to -0.136292, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:45.784 -07 000000611 INF: Z Motor: Settle wait time = 1467 ms, measure time = 104 ms (allowed 150 ms), total time = 1571 ms
17-03-18 06:27:45.784 -07 000000611 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:45.834 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1736 ms
17-03-18 06:27:45.834 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:45.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:45.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:45.834 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:45.834 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:45.834 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:45.834 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:45.834 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:45.834 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:45.844 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:45.844 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:45.854 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:27:45.854 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:27:45.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:45.904 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:46.204 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:46.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:46.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:46.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:27:46.244 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:46.244 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:46.244 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 06:27:46.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:27:46.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:46.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:27:46.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:27:46.344 -07 000000461 INF: Autofocus start
17-03-18 06:27:46.344 -07 000000461 INF: MeasureProfile start
17-03-18 06:27:46.344 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:46.344 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:46.354 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:46.354 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:46.354 -07 000000461 INF: MeasureProfile done
17-03-18 06:27:46.354 -07 000000461 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:27:46.354 -07 000000461 INF: Autofocus finished
17-03-18 06:27:46.554 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:46.554 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:27:46.554 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136293943395553. ----------
17-03-18 06:27:46.564 -07 000000610 INF: Cycle	149	Tile	12	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:46.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28281, sync = True, waitForSettling = True)
17-03-18 06:27:46.564 -07 000000610 INF: Z Motor: Moving to -0.129462 mm, started at -0.136294 mm, distance = 6.83 um
17-03-18 06:27:46.564 -07 000000610 INF: FPGA: Xmit ZDACW 28281\n [Z Motor]
17-03-18 06:27:46.564 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:27:46.574 -07 000000610 INF: FPGA: 'ZDACW 28281' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:46.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:46.574 -07 000000592 INF: FPGA: Recv ZDACR 28281
17-03-18 06:27:46.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:46.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:46.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:46.734 -07 000000585 INF: FPGA: Recv ZSGSRD 29443
17-03-18 06:27:46.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:46.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:46.744 -07 000000611 INF: FPGA: Recv ZSGSRD 29445
17-03-18 06:27:46.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:46.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:46.754 -07 000000585 INF: FPGA: Recv ZSGSRD 29439
17-03-18 06:27:46.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:46.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:46.764 -07 000000608 INF: FPGA: Recv ZSGSRD 29442
17-03-18 06:27:46.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:46.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:46.774 -07 000000462 INF: FPGA: Recv ZSGSRD 29440
17-03-18 06:27:46.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:46.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:46.784 -07 000000592 INF: FPGA: Recv ZSGSRD 29443
17-03-18 06:27:46.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:46.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:46.794 -07 000000585 INF: FPGA: Recv ZSGSRD 29448
17-03-18 06:27:46.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:46.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:46.804 -07 000000592 INF: FPGA: Recv ZSGSRD 29436
17-03-18 06:27:46.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:46.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:46.814 -07 000000608 INF: FPGA: Recv ZSGSRD 29445
17-03-18 06:27:46.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:46.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:46.824 -07 000000611 INF: FPGA: Recv ZSGSRD 29440
17-03-18 06:27:46.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:46.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:46.834 -07 000000462 INF: FPGA: Recv ZPIEZORD 24911
17-03-18 06:27:46.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:46.844 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.315 V. Piezo Error = -9.9 V.
17-03-18 06:27:46.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29442 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29442 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29436 (-128.6 uncal um), Max = 29448 (-128.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:27:46.844 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29442, posNoise = 6, negNoise = 6
17-03-18 06:27:46.844 -07 000000610 INF: Z Motor: After move to -0.129462, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:46.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:27:46.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:46.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:46.844 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:46.844 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:46.844 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:46.844 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:46.844 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:46.844 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:46.854 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:27:46.854 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:46.854 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 06:27:46.854 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:46.854 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:27:46.854 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:46.854 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:46.854 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:46.864 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:27:46.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:27:46.864 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 06:27:46.864 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:27:46.864 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:27:46.864 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:27:46.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28457 150\n [Camera]
17-03-18 06:27:47.074 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:47.534 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:27:47.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:27:47.534 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:47.534 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:27:47.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:27:47.534 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:47.534 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:47.534 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:27:47.544 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:47.544 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:27:47.724 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28457 844
17-03-18 06:27:47.874 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:47.914 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:27:47.914 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:27:47.914 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:47.914 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:27:47.914 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 06:27:47.914 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:47.914 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:47.914 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:47.914 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:27:47.924 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:27:48.094 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:27:48.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:27:48.094 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:48.094 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:27:48.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:27:48.094 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:48.104 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:48.104 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:27:48.104 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:48.104 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:27:48.284 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-18 06:27:48.284 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:48.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28457 150' command took 2 ms to send, 1407 ms to get response, and 1415 ms overall
17-03-18 06:27:48.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:48.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129465005888861. ------
17-03-18 06:27:48.294 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:48.294 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13539 mm
17-03-18 06:27:48.294 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:48.294 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29576, sync = True, waitForSettling = False)
17-03-18 06:27:48.294 -07 000000462 INF: Z Motor: Moving to -0.135390 mm, started at -0.129465 mm, distance = -5.93 um
17-03-18 06:27:48.294 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:48.294 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:27:48.294 -07 000000608 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 06:27:48.304 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:27:48.304 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:48.304 -07 000000501 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:27:48.314 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:27:48.314 -07 000000608 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:48.314 -07 000000608 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:48.314 -07 000000608 INF: Y Motor: Moving 1354 steps-33
17-03-18 06:27:48.314 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:48.324 -07 000000462 INF: FPGA: Xmit ZDACW 29576\n [Z Motor]
17-03-18 06:27:48.324 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:27:48.334 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:48.334 -07 000000462 INF: FPGA: 'ZDACW 29576' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 06:27:48.344 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:48.344 -07 000000591 INF: FPGA: Recv ZDACR 29576
17-03-18 06:27:48.354 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:27:48.354 -07 000000462 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 06:27:48.484 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:27:48.484 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:27:48.484 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:48.494 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:48.494 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:27:48.494 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:27:48.494 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:48.494 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:27:48.504 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:48.504 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:27:48.514 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:48.514 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 06:27:48.704 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 06:27:48.704 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:27:48.764 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:48.764 -07 000000611 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:27:48.774 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:48.774 -07 000000608 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:48.774 -07 000000608 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:27:48.774 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 06:27:49.724 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:49.724 -07 000000585 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:27:49.734 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:49.734 -07 000000608 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:49.764 -07 000000608 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:49.764 -07 000000608 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:27:49.764 -07 000000608 INF: Y Motor: Moved to 69.8628 after 1465 ms (table move)
17-03-18 06:27:49.764 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135390 mm (DAC = 29576)
17-03-18 06:27:49.764 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:49.774 -07 000000461 INF: FPGA: Recv ZSGSRD 30364
17-03-18 06:27:49.774 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:27:49.774 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:49.774 -07 000000579 INF: FPGA: Recv ZSGSRD 30372
17-03-18 06:27:49.784 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:49.784 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:49.784 -07 000000608 INF: FPGA: Recv ZSGSRD 30366
17-03-18 06:27:49.794 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:49.794 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:49.794 -07 000000461 INF: FPGA: Recv ZSGSRD 30359
17-03-18 06:27:49.804 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:49.804 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:49.804 -07 000000591 INF: FPGA: Recv ZSGSRD 30366
17-03-18 06:27:49.814 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:49.814 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:49.814 -07 000000467 INF: FPGA: Recv ZSGSRD 30364
17-03-18 06:27:49.824 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:49.824 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:49.824 -07 000000462 INF: FPGA: Recv ZSGSRD 30369
17-03-18 06:27:49.834 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:49.834 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:49.834 -07 000000437 INF: FPGA: Recv ZSGSRD 30365
17-03-18 06:27:49.844 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:49.844 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:49.844 -07 000000462 INF: FPGA: Recv ZSGSRD 30366
17-03-18 06:27:49.854 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:49.854 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:49.854 -07 000000585 INF: FPGA: Recv ZSGSRD 30370
17-03-18 06:27:49.864 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:49.864 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:49.864 -07 000000462 INF: FPGA: Recv ZPIEZORD 26135
17-03-18 06:27:49.874 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:49.874 -07 000000592 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -9.3 V.
17-03-18 06:27:49.874 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30366 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30366 (-134.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30359 (-134.6 uncal um), Max = 30372 (-134.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:27:49.874 -07 000000592 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30366, posNoise = 6, negNoise = 7
17-03-18 06:27:49.874 -07 000000592 INF: Z Motor: After move to -0.135390, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:49.874 -07 000000592 INF: Z Motor: Settle wait time = 1471 ms, measure time = 103 ms (allowed 150 ms), total time = 1574 ms
17-03-18 06:27:49.874 -07 000000592 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:49.924 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:27:49.924 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:49.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:49.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:49.924 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:49.924 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:49.924 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:49.924 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:49.934 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:27:49.934 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:49.934 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:49.934 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:49.934 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:27:49.944 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:27:49.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:49.984 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:50.274 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.018051,
17-03-18 06:27:50.284 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:50.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:50.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:50.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 06:27:50.324 -07 000000579 INF: FPGA: Recv @CAMSNAP 382
17-03-18 06:27:50.324 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:50.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 06:27:50.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:27:50.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:50.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:27:50.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:27:50.434 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:50.434 -07 000000592 INF: Autofocus start
17-03-18 06:27:50.434 -07 000000592 INF: MeasureProfile start
17-03-18 06:27:50.434 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:50.444 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:50.444 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:50.444 -07 000000592 INF: MeasureProfile done
17-03-18 06:27:50.444 -07 000000592 INF: X=112  Z correction [um]=0.5148152
17-03-18 06:27:50.444 -07 000000592 INF: Autofocus finished
17-03-18 06:27:50.644 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:50.644 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 06:27:50.654 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.135400977907848. ----------
17-03-18 06:27:50.654 -07 000000610 INF: Cycle	149	Tile	13	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:50.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28201, sync = True, waitForSettling = True)
17-03-18 06:27:50.654 -07 000000610 INF: Z Motor: Moving to -0.129096 mm, started at -0.135401 mm, distance = 6.31 um
17-03-18 06:27:50.664 -07 000000610 INF: FPGA: Xmit ZDACW 28201\n [Z Motor]
17-03-18 06:27:50.664 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:27:50.674 -07 000000610 INF: FPGA: 'ZDACW 28201' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:27:50.674 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:50.674 -07 000000437 INF: FPGA: Recv ZDACR 28201
17-03-18 06:27:50.684 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:50.684 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:50.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:50.834 -07 000000591 INF: FPGA: Recv ZSGSRD 29386
17-03-18 06:27:50.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:50.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:50.844 -07 000000462 INF: FPGA: Recv ZSGSRD 29383
17-03-18 06:27:50.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:50.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:50.854 -07 000000502 INF: FPGA: Recv ZSGSRD 29388
17-03-18 06:27:50.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:50.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:50.864 -07 000000462 INF: FPGA: Recv ZSGSRD 29382
17-03-18 06:27:50.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:50.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:50.874 -07 000000592 INF: FPGA: Recv ZSGSRD 29384
17-03-18 06:27:50.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:50.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:50.884 -07 000000591 INF: FPGA: Recv ZSGSRD 29386
17-03-18 06:27:50.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:50.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:50.894 -07 000000592 INF: FPGA: Recv ZSGSRD 29387
17-03-18 06:27:50.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:50.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:50.904 -07 000000461 INF: FPGA: Recv ZSGSRD 29387
17-03-18 06:27:50.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:50.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:50.914 -07 000000462 INF: FPGA: Recv ZSGSRD 29384
17-03-18 06:27:50.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:50.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:50.924 -07 000000591 INF: FPGA: Recv ZSGSRD 29383
17-03-18 06:27:50.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:50.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:50.934 -07 000000461 INF: FPGA: Recv ZPIEZORD 24858
17-03-18 06:27:50.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:50.944 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -9.9 V.
17-03-18 06:27:50.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29385 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29385 (-128.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29382 (-128.3 uncal um), Max = 29388 (-128.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:27:50.944 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29385, posNoise = 3, negNoise = 3
17-03-18 06:27:50.944 -07 000000610 INF: Z Motor: After move to -0.129096, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:50.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 06:27:50.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:50.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:50.944 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:50.944 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:50.944 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:50.944 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:50.944 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:50.944 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:50.944 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:50.944 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:50.944 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:27:50.944 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:50.954 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:50.954 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:27:50.954 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:50.954 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:50.964 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:27:50.964 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:27:50.964 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:27:50.964 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:27:50.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28377 150\n [Camera]
17-03-18 06:27:51.164 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:51.634 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:27:51.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:27:51.634 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:51.634 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:51.634 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:27:51.634 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:27:51.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:27:51.634 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:51.634 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:51.634 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:27:51.824 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28377 844
17-03-18 06:27:51.864 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:27:51.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:27:51.974 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:52.024 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:27:52.024 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:27:52.024 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:52.024 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:27:52.024 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:27:52.024 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:52.034 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:52.034 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:27:52.034 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:52.034 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:27:52.194 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:27:52.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:27:52.194 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:52.194 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:52.194 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:27:52.194 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:27:52.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:27:52.194 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:52.194 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:52.194 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 06:27:52.384 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:27:52.384 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:52.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28377 150' command took 2 ms to send, 1405 ms to get response, and 1414 ms overall
17-03-18 06:27:52.384 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:52.384 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129098825796781. ------
17-03-18 06:27:52.514 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13540 mm
17-03-18 06:27:52.514 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:52.514 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:52.514 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:27:52.514 -07 000000592 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 06:27:52.514 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29578, sync = True, waitForSettling = False)
17-03-18 06:27:52.514 -07 000000467 INF: Z Motor: Moving to -0.135399 mm, started at -0.129099 mm, distance = -6.30 um
17-03-18 06:27:52.514 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:52.524 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:52.524 -07 000000467 INF: FPGA: Xmit ZDACW 29578\n [Z Motor]
17-03-18 06:27:52.524 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:27:52.534 -07 000000467 INF: FPGA: 'ZDACW 29578' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:27:52.534 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:52.534 -07 000000462 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:27:52.544 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:27:52.544 -07 000000592 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:52.544 -07 000000592 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:52.544 -07 000000592 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:27:52.544 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:52.554 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:52.554 -07 000000462 INF: FPGA: Recv ZDACR 29578
17-03-18 06:27:52.564 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:52.564 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:27:52.564 -07 000000467 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 06:27:52.594 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:27:52.594 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:27:52.594 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:52.594 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:27:52.594 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:27:52.594 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:52.604 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:52.604 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:27:52.604 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:27:52.604 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:27:52.744 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:52.744 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 06:27:52.934 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:27:52.934 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 06:27:52.994 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:52.994 -07 000000437 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:27:53.004 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:53.004 -07 000000592 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:53.004 -07 000000592 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:27:53.004 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 06:27:53.954 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:53.954 -07 000000467 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:27:53.964 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:53.964 -07 000000592 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:53.994 -07 000000592 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:53.994 -07 000000592 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:27:53.994 -07 000000592 INF: Y Motor: Moved to 70.6880 after 1475 ms (table move)
17-03-18 06:27:53.994 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135399 mm (DAC = 29578)
17-03-18 06:27:53.994 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:53.994 -07 000000467 INF: FPGA: Recv ZSGSRD 30374
17-03-18 06:27:54.004 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:27:54.004 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:54.004 -07 000000437 INF: FPGA: Recv ZSGSRD 30359
17-03-18 06:27:54.014 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:54.014 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:54.014 -07 000000467 INF: FPGA: Recv ZSGSRD 30365
17-03-18 06:27:54.024 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:54.024 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:54.024 -07 000000591 INF: FPGA: Recv ZSGSRD 30359
17-03-18 06:27:54.034 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:54.034 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:54.034 -07 000000462 INF: FPGA: Recv ZSGSRD 30365
17-03-18 06:27:54.044 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:54.044 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:54.044 -07 000000592 INF: FPGA: Recv ZSGSRD 30370
17-03-18 06:27:54.054 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:54.054 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:54.054 -07 000000437 INF: FPGA: Recv ZSGSRD 30373
17-03-18 06:27:54.064 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:54.064 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:54.064 -07 000000467 INF: FPGA: Recv ZSGSRD 30371
17-03-18 06:27:54.074 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:54.074 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:54.074 -07 000000461 INF: FPGA: Recv ZSGSRD 30363
17-03-18 06:27:54.084 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:54.084 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:54.084 -07 000000569 INF: FPGA: Recv ZSGSRD 30370
17-03-18 06:27:54.094 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:27:54.094 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:54.094 -07 000000592 INF: FPGA: Recv ZPIEZORD 26120
17-03-18 06:27:54.104 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:54.104 -07 000000502 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -9.3 V.
17-03-18 06:27:54.104 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30367 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30368 (-134.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30359 (-134.6 uncal um), Max = 30374 (-134.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:27:54.104 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30367, posNoise = 7, negNoise = 8
17-03-18 06:27:54.104 -07 000000502 INF: Z Motor: After move to -0.135399, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:54.104 -07 000000502 INF: Z Motor: Settle wait time = 1478 ms, measure time = 105 ms (allowed 150 ms), total time = 1583 ms
17-03-18 06:27:54.104 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:54.154 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 06:27:54.154 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:54.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:54.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:54.154 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:54.154 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:54.154 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:54.154 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:54.154 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:54.154 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:54.164 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:54.164 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:54.164 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:27:54.164 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:27:54.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:54.214 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:54.514 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:54.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:54.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:54.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:27:54.554 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:54.554 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:54.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:27:54.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:27:54.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:54.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:27:54.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:27:54.654 -07 000000569 INF: Autofocus start
17-03-18 06:27:54.654 -07 000000569 INF: MeasureProfile start
17-03-18 06:27:54.654 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:54.654 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:54.664 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:54.664 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:54.674 -07 000000569 INF: MeasureProfile done
17-03-18 06:27:54.674 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:27:54.674 -07 000000569 INF: Autofocus finished
17-03-18 06:27:54.864 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:54.864 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 06:27:54.874 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.13540740211999. ----------
17-03-18 06:27:54.874 -07 000000610 INF: Cycle	149	Tile	14	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:54.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28073, sync = True, waitForSettling = True)
17-03-18 06:27:54.874 -07 000000610 INF: Z Motor: Moving to -0.128510 mm, started at -0.135407 mm, distance = 6.90 um
17-03-18 06:27:54.874 -07 000000610 INF: FPGA: Xmit ZDACW 28073\n [Z Motor]
17-03-18 06:27:54.874 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:27:54.884 -07 000000610 INF: FPGA: 'ZDACW 28073' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:54.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:54.884 -07 000000592 INF: FPGA: Recv ZDACR 28073
17-03-18 06:27:54.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:54.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:55.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:55.044 -07 000000467 INF: FPGA: Recv ZSGSRD 29292
17-03-18 06:27:55.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:55.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:55.054 -07 000000461 INF: FPGA: Recv ZSGSRD 29295
17-03-18 06:27:55.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:55.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:55.064 -07 000000437 INF: FPGA: Recv ZSGSRD 29295
17-03-18 06:27:55.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:55.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:55.074 -07 000000461 INF: FPGA: Recv ZSGSRD 29294
17-03-18 06:27:55.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:55.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:55.084 -07 000000502 INF: FPGA: Recv ZSGSRD 29294
17-03-18 06:27:55.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:55.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:55.094 -07 000000569 INF: FPGA: Recv ZSGSRD 29298
17-03-18 06:27:55.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:55.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:55.104 -07 000000591 INF: FPGA: Recv ZSGSRD 29296
17-03-18 06:27:55.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:55.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:55.114 -07 000000461 INF: FPGA: Recv ZSGSRD 29296
17-03-18 06:27:55.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:55.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:55.124 -07 000000591 INF: FPGA: Recv ZSGSRD 29292
17-03-18 06:27:55.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:55.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:55.134 -07 000000467 INF: FPGA: Recv ZSGSRD 29298
17-03-18 06:27:55.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:55.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:55.144 -07 000000502 INF: FPGA: Recv ZPIEZORD 24749
17-03-18 06:27:55.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:55.154 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -10.0 V.
17-03-18 06:27:55.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29295 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29295 (-127.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29292 (-127.7 uncal um), Max = 29298 (-127.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:27:55.154 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29295, posNoise = 3, negNoise = 3
17-03-18 06:27:55.154 -07 000000610 INF: Z Motor: After move to -0.128510, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:55.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:27:55.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:55.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:55.154 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:55.154 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:55.154 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:55.154 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:55.154 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:55.154 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:55.154 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:27:55.154 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:55.154 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:55.154 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:55.154 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:55.154 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:55.164 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:27:55.164 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:55.164 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:27:55.164 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:27:55.164 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:27:55.164 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:27:55.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28249 150\n [Camera]
17-03-18 06:27:55.374 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:27:55.634 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.003063,
17-03-18 06:27:55.834 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 652
17-03-18 06:27:55.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 652
17-03-18 06:27:55.834 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:55.834 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 652
17-03-18 06:27:55.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 652
17-03-18 06:27:55.834 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:55.834 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:55.834 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:27:55.844 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:55.844 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:27:56.024 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28249 844
17-03-18 06:27:56.174 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:27:56.214 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:27:56.214 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:27:56.214 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:56.224 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:27:56.224 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:27:56.224 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:56.224 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:56.224 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:27:56.224 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:27:56.224 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:27:56.394 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:27:56.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:27:56.394 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:27:56.394 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:27:56.394 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 06:27:56.404 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:27:56.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:27:56.404 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:27:56.404 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:27:56.404 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:27:56.584 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:27:56.584 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:27:56.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28249 150' command took 2 ms to send, 1407 ms to get response, and 1415 ms overall
17-03-18 06:27:56.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:27:56.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128520646704022. ------
17-03-18 06:27:56.594 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:56.594 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13525 mm
17-03-18 06:27:56.594 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:27:56.594 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29546, sync = True, waitForSettling = False)
17-03-18 06:27:56.594 -07 000000437 INF: Z Motor: Moving to -0.135253 mm, started at -0.128521 mm, distance = -6.73 um
17-03-18 06:27:56.594 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:27:56.594 -07 000000569 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 06:27:56.604 -07 000000437 INF: FPGA: Xmit ZDACW 29546\n [Z Motor]
17-03-18 06:27:56.614 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:56.804 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 408 ms.
17-03-18 06:27:56.804 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:27:56.804 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:56.804 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:27:56.804 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:27:56.804 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:56.814 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:56.814 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 06:27:56.934 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:27:56.934 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms.
17-03-18 06:27:56.934 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:56.934 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:27:56.934 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 339 ms to get response, and 346 ms overall
17-03-18 06:27:56.934 -07 000000437 INF: FPGA: 'ZDACW 29546' command took 0 ms to send, 329 ms to get response, and 343 ms overall
17-03-18 06:27:56.944 -07 000000592 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:27:56.944 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:27:56.944 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 320 ms to get response, and 343 ms overall
17-03-18 06:27:56.944 -07 000000569 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:56.944 -07 000000569 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:27:56.944 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:27:56.944 -07 000000569 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:27:56.944 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:56.944 -07 000000592 INF: FPGA: Recv ZDACR 29546
17-03-18 06:27:56.954 -07 000000437 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:56.954 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:27:56.954 -07 000000437 INF: Z Motor: MoveAbsStepped took 353 ms (did NOT wait for settling yet))
17-03-18 06:27:56.964 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:27:57.154 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:27:57.154 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 06:27:57.334 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 06:27:57.344 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 06:27:57.394 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:57.394 -07 000000592 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:27:57.404 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:27:57.404 -07 000000569 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:57.404 -07 000000569 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:27:57.404 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.117 mm/sec
17-03-18 06:27:58.354 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:27:58.354 -07 000000592 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:27:58.364 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:27:58.364 -07 000000569 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:27:58.394 -07 000000569 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:27:58.394 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:27:58.394 -07 000000569 INF: Y Motor: Moved to 71.5186 after 1796 ms (table move)
17-03-18 06:27:58.394 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135253 mm (DAC = 29546)
17-03-18 06:27:58.394 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:58.404 -07 000000474 INF: FPGA: Recv ZSGSRD 30347
17-03-18 06:27:58.404 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:27:58.404 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:58.404 -07 000000592 INF: FPGA: Recv ZSGSRD 30343
17-03-18 06:27:58.414 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:58.414 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:58.414 -07 000000474 INF: FPGA: Recv ZSGSRD 30336
17-03-18 06:27:58.424 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:58.424 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:58.424 -07 000000592 INF: FPGA: Recv ZSGSRD 30346
17-03-18 06:27:58.434 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:58.434 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:58.434 -07 000000467 INF: FPGA: Recv ZSGSRD 30346
17-03-18 06:27:58.444 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:58.444 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:58.444 -07 000000437 INF: FPGA: Recv ZSGSRD 30343
17-03-18 06:27:58.454 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:58.454 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:58.454 -07 000000467 INF: FPGA: Recv ZSGSRD 30352
17-03-18 06:27:58.464 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:58.464 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:58.464 -07 000000569 INF: FPGA: Recv ZSGSRD 30342
17-03-18 06:27:58.474 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:58.474 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:58.474 -07 000000467 INF: FPGA: Recv ZSGSRD 30352
17-03-18 06:27:58.484 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:58.484 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:58.484 -07 000000437 INF: FPGA: Recv ZSGSRD 30344
17-03-18 06:27:58.494 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:58.494 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:58.494 -07 000000474 INF: FPGA: Recv ZPIEZORD 26155
17-03-18 06:27:58.504 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:58.504 -07 000000502 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -9.2 V.
17-03-18 06:27:58.504 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30345 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30345 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30336 (-134.4 uncal um), Max = 30352 (-134.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:27:58.504 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30345, posNoise = 7, negNoise = 9
17-03-18 06:27:58.504 -07 000000502 INF: Z Motor: After move to -0.135253, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:58.504 -07 000000502 INF: Z Motor: Settle wait time = 1801 ms, measure time = 103 ms (allowed 150 ms), total time = 1904 ms
17-03-18 06:27:58.504 -07 000000502 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:27:58.554 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1956 ms
17-03-18 06:27:58.554 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:27:58.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:58.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:58.554 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:58.554 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:58.554 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:27:58.554 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:58.554 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:27:58.554 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:27:58.564 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:27:58.564 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:27:58.564 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:27:58.564 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:27:58.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:27:58.614 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:27:58.914 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:27:58.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:27:58.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:27:58.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:27:58.954 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:27:58.954 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 06:27:58.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 06:27:59.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 06:27:59.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:27:59.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:27:59.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 06:27:59.054 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:27:59.054 -07 000000437 INF: Autofocus start
17-03-18 06:27:59.054 -07 000000437 INF: MeasureProfile start
17-03-18 06:27:59.054 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:27:59.064 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:27:59.064 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:27:59.064 -07 000000437 INF: MeasureProfile done
17-03-18 06:27:59.064 -07 000000437 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:27:59.064 -07 000000437 INF: Autofocus finished
17-03-18 06:27:59.264 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:27:59.264 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 06:27:59.274 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.135266069452871. ----------
17-03-18 06:27:59.274 -07 000000610 INF: Cycle	149	Tile	15	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:27:59.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28087, sync = True, waitForSettling = True)
17-03-18 06:27:59.274 -07 000000610 INF: Z Motor: Moving to -0.128574 mm, started at -0.135266 mm, distance = 6.69 um
17-03-18 06:27:59.274 -07 000000610 INF: FPGA: Xmit ZDACW 28087\n [Z Motor]
17-03-18 06:27:59.274 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:27:59.284 -07 000000610 INF: FPGA: 'ZDACW 28087' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:27:59.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:27:59.284 -07 000000592 INF: FPGA: Recv ZDACR 28087
17-03-18 06:27:59.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:59.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:27:59.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:59.444 -07 000000474 INF: FPGA: Recv ZSGSRD 29298
17-03-18 06:27:59.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:59.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:59.454 -07 000000629 INF: FPGA: Recv ZSGSRD 29310
17-03-18 06:27:59.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:59.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:59.464 -07 000000480 INF: FPGA: Recv ZSGSRD 29308
17-03-18 06:27:59.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:59.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:59.474 -07 000000480 INF: FPGA: Recv ZSGSRD 29311
17-03-18 06:27:59.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:59.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:59.484 -07 000000569 INF: FPGA: Recv ZSGSRD 29304
17-03-18 06:27:59.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:59.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:59.494 -07 000000437 INF: FPGA: Recv ZSGSRD 29303
17-03-18 06:27:59.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:59.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:59.504 -07 000000629 INF: FPGA: Recv ZSGSRD 29314
17-03-18 06:27:59.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:59.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:59.514 -07 000000437 INF: FPGA: Recv ZSGSRD 29296
17-03-18 06:27:59.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:59.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:59.524 -07 000000467 INF: FPGA: Recv ZSGSRD 29300
17-03-18 06:27:59.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:59.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:27:59.534 -07 000000480 INF: FPGA: Recv ZSGSRD 29303
17-03-18 06:27:59.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:59.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:27:59.544 -07 000000591 INF: FPGA: Recv ZPIEZORD 24787
17-03-18 06:27:59.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:27:59.554 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.286 V. Piezo Error = -9.9 V.
17-03-18 06:27:59.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29305 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29304 (-127.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29296 (-127.8 uncal um), Max = 29314 (-127.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:27:59.554 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29305, posNoise = 9, negNoise = 9
17-03-18 06:27:59.554 -07 000000610 INF: Z Motor: After move to -0.128574, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:27:59.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:27:59.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:27:59.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:27:59.554 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:27:59.554 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:27:59.554 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:27:59.554 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:27:59.554 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:27:59.554 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:27:59.554 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:27:59.554 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:27:59.554 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:27:59.554 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:27:59.564 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:27:59.564 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:27:59.564 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:27:59.564 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:27:59.564 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:27:59.564 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:27:59.574 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:27:59.574 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:27:59.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28264 150\n [Camera]
17-03-18 06:27:59.774 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:28:00.234 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:28:00.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:28:00.234 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:28:00.234 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:28:00.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:28:00.234 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:28:00.234 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:28:00.234 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:28:00.244 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:28:00.244 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:28:00.424 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28264 844
17-03-18 06:28:00.574 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:28:00.634 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:28:00.634 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:28:00.634 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:00.634 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:28:00.634 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:28:00.634 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:00.634 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:28:00.634 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:28:00.634 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:28:00.644 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:28:00.794 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:28:00.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:28:00.794 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:28:00.794 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:28:00.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:28:00.794 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:28:00.794 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:28:00.794 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:28:00.794 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:28:00.794 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:28:00.984 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:28:00.984 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:28:00.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28264 150' command took 2 ms to send, 1407 ms to get response, and 1414 ms overall
17-03-18 06:28:00.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:28:00.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.12858488882544. ------
17-03-18 06:28:00.994 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 3.985358,
17-03-18 06:28:00.994 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13503 mm
17-03-18 06:28:00.994 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:28:01.114 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:28:01.114 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29497, sync = True, waitForSettling = False)
17-03-18 06:28:01.114 -07 000000474 INF: Z Motor: Moving to -0.135029 mm, started at -0.128585 mm, distance = -6.44 um
17-03-18 06:28:01.114 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:28:01.114 -07 000000467 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 06:28:01.144 -07 000000474 INF: FPGA: Xmit ZDACW 29497\n [Z Motor]
17-03-18 06:28:01.154 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:01.184 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:28:01.184 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:28:01.184 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:01.184 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:28:01.194 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:28:01.194 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:01.194 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:28:01.194 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:28:01.194 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:28:01.194 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:28:01.204 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:28:01.204 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:28:01.204 -07 000000502 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:28:01.204 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 44 ms to get response, and 86 ms overall
17-03-18 06:28:01.204 -07 000000467 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:01.204 -07 000000467 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:28:01.204 -07 000000467 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:28:01.204 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 84 ms to get response, and 211 ms overall
17-03-18 06:28:01.204 -07 000000474 INF: FPGA: 'ZDACW 29497' command took 0 ms to send, 54 ms to get response, and 86 ms overall
17-03-18 06:28:01.224 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:28:01.224 -07 000000437 INF: FPGA: Recv ZDACR 29497
17-03-18 06:28:01.234 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:28:01.234 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:28:01.234 -07 000000474 INF: Z Motor: MoveAbsStepped took 113 ms (did NOT wait for settling yet))
17-03-18 06:28:01.244 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:28:01.444 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:28:01.444 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 237 ms overall
17-03-18 06:28:01.604 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 06:28:01.604 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 402 ms overall
17-03-18 06:28:01.654 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:01.664 -07 000000474 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:28:01.664 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:28:01.664 -07 000000467 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:01.664 -07 000000467 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 06:28:01.664 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 403 ms, distance = 0.844 mm, average velocity = 2.094 mm/sec
17-03-18 06:28:01.864 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:28:01.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:28:02.614 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:02.614 -07 000000437 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:28:02.624 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:02.624 -07 000000467 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:02.654 -07 000000467 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:28:02.654 -07 000000467 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:28:02.654 -07 000000467 INF: Y Motor: Moved to 72.3491 after 1535 ms (table move)
17-03-18 06:28:02.654 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135029 mm (DAC = 29497)
17-03-18 06:28:02.654 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:02.654 -07 000000437 INF: FPGA: Recv ZSGSRD 30312
17-03-18 06:28:02.664 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:28:02.664 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:02.664 -07 000000579 INF: FPGA: Recv ZSGSRD 30304
17-03-18 06:28:02.674 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:02.674 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:02.674 -07 000000467 INF: FPGA: Recv ZSGSRD 30308
17-03-18 06:28:02.684 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:02.684 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:02.684 -07 000000474 INF: FPGA: Recv ZSGSRD 30307
17-03-18 06:28:02.694 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:02.694 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:02.694 -07 000000608 INF: FPGA: Recv ZSGSRD 30305
17-03-18 06:28:02.704 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:02.704 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:02.704 -07 000000474 INF: FPGA: Recv ZSGSRD 30305
17-03-18 06:28:02.714 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:02.714 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:02.714 -07 000000608 INF: FPGA: Recv ZSGSRD 30309
17-03-18 06:28:02.724 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:02.724 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:02.724 -07 000000467 INF: FPGA: Recv ZSGSRD 30309
17-03-18 06:28:02.734 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:28:02.734 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:02.734 -07 000000437 INF: FPGA: Recv ZSGSRD 30307
17-03-18 06:28:02.744 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:02.744 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:02.744 -07 000000467 INF: FPGA: Recv ZSGSRD 30312
17-03-18 06:28:02.754 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:02.754 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:28:02.754 -07 000000474 INF: FPGA: Recv ZPIEZORD 26134
17-03-18 06:28:02.764 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:02.764 -07 000000629 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -9.2 V.
17-03-18 06:28:02.764 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30308 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30308 (-134.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30304 (-134.2 uncal um), Max = 30312 (-134.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:28:02.764 -07 000000629 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30308, posNoise = 4, negNoise = 4
17-03-18 06:28:02.764 -07 000000629 INF: Z Motor: After move to -0.135029, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:28:02.764 -07 000000629 INF: Z Motor: Settle wait time = 1538 ms, measure time = 105 ms (allowed 150 ms), total time = 1643 ms
17-03-18 06:28:02.764 -07 000000629 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:28:02.814 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1817 ms
17-03-18 06:28:02.814 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:28:02.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:28:02.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:28:02.814 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:28:02.814 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:28:02.814 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:28:02.814 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:28:02.814 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:28:02.814 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:28:02.824 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:28:02.824 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:28:02.824 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:28:02.834 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:28:02.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:28:02.874 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:28:03.174 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:28:03.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:28:03.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:28:03.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) start.
17-03-18 06:28:03.214 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:28:03.214 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:28:03.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 06:28:03.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594366336, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 06:28:03.304 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:03.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:28:03.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 06:28:03.314 -07 000000467 INF: Autofocus start
17-03-18 06:28:03.314 -07 000000467 INF: MeasureProfile start
17-03-18 06:28:03.314 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:28:03.314 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:28:03.324 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:28:03.324 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:28:03.324 -07 000000467 INF: MeasureProfile done
17-03-18 06:28:03.324 -07 000000467 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:28:03.324 -07 000000467 INF: Autofocus finished
17-03-18 06:28:03.524 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:28:03.524 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:28:03.524 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.135028373603626. ----------
17-03-18 06:28:03.534 -07 000000610 INF: Cycle	149	Tile	16	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:28:03.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28005, sync = True, waitForSettling = True)
17-03-18 06:28:03.534 -07 000000610 INF: Z Motor: Moving to -0.128199 mm, started at -0.135028 mm, distance = 6.83 um
17-03-18 06:28:03.534 -07 000000610 INF: FPGA: Xmit ZDACW 28005\n [Z Motor]
17-03-18 06:28:03.534 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:28:03.544 -07 000000610 INF: FPGA: 'ZDACW 28005' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:28:03.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:28:03.544 -07 000000629 INF: FPGA: Recv ZDACR 28005
17-03-18 06:28:03.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:03.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:28:03.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:03.704 -07 000000502 INF: FPGA: Recv ZSGSRD 29255
17-03-18 06:28:03.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:28:03.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:03.714 -07 000000502 INF: FPGA: Recv ZSGSRD 29243
17-03-18 06:28:03.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:03.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:03.724 -07 000000467 INF: FPGA: Recv ZSGSRD 29244
17-03-18 06:28:03.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:03.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:03.734 -07 000000502 INF: FPGA: Recv ZSGSRD 29242
17-03-18 06:28:03.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:03.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:03.744 -07 000000467 INF: FPGA: Recv ZSGSRD 29244
17-03-18 06:28:03.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:03.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:03.754 -07 000000467 INF: FPGA: Recv ZSGSRD 29252
17-03-18 06:28:03.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:03.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:03.764 -07 000000502 INF: FPGA: Recv ZSGSRD 29238
17-03-18 06:28:03.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:03.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:03.774 -07 000000502 INF: FPGA: Recv ZSGSRD 29246
17-03-18 06:28:03.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:03.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:03.784 -07 000000502 INF: FPGA: Recv ZSGSRD 29247
17-03-18 06:28:03.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:03.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:03.794 -07 000000467 INF: FPGA: Recv ZSGSRD 29245
17-03-18 06:28:03.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:03.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:28:03.804 -07 000000608 INF: FPGA: Recv ZPIEZORD 24727
17-03-18 06:28:03.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:03.814 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -9.9 V.
17-03-18 06:28:03.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29246 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29244 (-127.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29238 (-127.4 uncal um), Max = 29255 (-127.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:28:03.814 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29246, posNoise = 9, negNoise = 8
17-03-18 06:28:03.814 -07 000000610 INF: Z Motor: After move to -0.128199, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:28:03.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:28:03.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:28:03.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:28:03.814 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:28:03.814 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:28:03.814 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:28:03.814 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:28:03.814 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:28:03.814 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:28:03.814 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:28:03.814 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:28:03.814 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:28:03.814 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:28:03.824 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:28:03.824 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:28:03.824 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:28:03.824 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:28:03.824 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:28:03.834 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:28:03.834 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:28:03.834 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:28:03.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28181 150\n [Camera]
17-03-18 06:28:04.034 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:28:04.494 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:28:04.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:28:04.494 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:28:04.494 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:28:04.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:28:04.494 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:28:04.504 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:28:04.504 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 06:28:04.504 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:28:04.504 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 06:28:04.684 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28181 844
17-03-18 06:28:04.834 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:28:04.884 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:28:04.884 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:28:04.884 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:04.884 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:28:04.884 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:28:04.884 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:28:04.884 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:04.884 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:28:04.884 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:28:04.894 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:28:05.054 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:28:05.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:28:05.054 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:28:05.064 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:28:05.064 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:28:05.064 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:28:05.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:28:05.064 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:28:05.064 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:28:05.064 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:28:05.244 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-18 06:28:05.244 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:28:05.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28181 150' command took 2 ms to send, 1409 ms to get response, and 1414 ms overall
17-03-18 06:28:05.254 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:28:05.254 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128205860309076. ------
17-03-18 06:28:05.254 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:28:05.254 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13467 mm
17-03-18 06:28:05.254 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:28:05.254 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:28:05.254 -07 000000437 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 06:28:05.254 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29419, sync = True, waitForSettling = False)
17-03-18 06:28:05.254 -07 000000501 INF: Z Motor: Moving to -0.134672 mm, started at -0.128206 mm, distance = -6.47 um
17-03-18 06:28:05.254 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:28:05.264 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:28:05.264 -07 000000501 INF: FPGA: Xmit ZDACW 29419\n [Z Motor]
17-03-18 06:28:05.264 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:28:05.274 -07 000000501 INF: FPGA: 'ZDACW 29419' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:28:05.274 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:05.284 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:28:05.294 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:28:05.464 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:28:05.464 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:28:05.464 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:05.464 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:28:05.464 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:28:05.464 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:05.474 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:28:05.474 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 06:28:05.474 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:28:05.484 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:28:05.484 -07 000000629 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:28:05.484 -07 000000629 INF: FPGA: Recv ZDACR 29419
17-03-18 06:28:05.484 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:28:05.484 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 06:28:05.484 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 185 ms to get response, and 215 ms overall
17-03-18 06:28:05.484 -07 000000501 INF: Z Motor: MoveAbsStepped took 228 ms (did NOT wait for settling yet))
17-03-18 06:28:05.484 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 205 ms to get response, and 228 ms overall
17-03-18 06:28:05.484 -07 000000437 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:05.484 -07 000000437 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:28:05.484 -07 000000437 INF: Y Motor: Moving 1350 steps-28
17-03-18 06:28:05.484 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:28:05.864 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:28:05.864 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 379 ms overall
17-03-18 06:28:05.914 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:05.924 -07 000000474 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:28:05.924 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:28:05.924 -07 000000437 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:05.924 -07 000000437 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 06:28:05.924 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.843 mm, average velocity = 2.220 mm/sec
17-03-18 06:28:06.544 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.016692,
17-03-18 06:28:06.864 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:28:06.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:28:06.874 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:06.874 -07 000000501 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:28:06.884 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:06.884 -07 000000437 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:06.914 -07 000000437 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:28:06.914 -07 000000437 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:28:06.914 -07 000000437 INF: Y Motor: Moved to 73.1753 after 1659 ms (table move)
17-03-18 06:28:06.924 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134672 mm (DAC = 29419)
17-03-18 06:28:06.924 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:06.924 -07 000000501 INF: FPGA: Recv ZSGSRD 30257
17-03-18 06:28:06.934 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:06.934 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:06.934 -07 000000474 INF: FPGA: Recv ZSGSRD 30261
17-03-18 06:28:06.944 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:06.944 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:06.944 -07 000000629 INF: FPGA: Recv ZSGSRD 30256
17-03-18 06:28:06.954 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:06.954 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:06.954 -07 000000474 INF: FPGA: Recv ZSGSRD 30252
17-03-18 06:28:06.964 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:06.964 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:06.964 -07 000000629 INF: FPGA: Recv ZSGSRD 30251
17-03-18 06:28:06.974 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:06.974 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:06.974 -07 000000474 INF: FPGA: Recv ZSGSRD 30257
17-03-18 06:28:06.984 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:06.984 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:06.984 -07 000000474 INF: FPGA: Recv ZSGSRD 30257
17-03-18 06:28:06.994 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:06.994 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:06.994 -07 000000437 INF: FPGA: Recv ZSGSRD 30253
17-03-18 06:28:07.004 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:07.004 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:07.004 -07 000000501 INF: FPGA: Recv ZSGSRD 30255
17-03-18 06:28:07.014 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:07.014 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:07.014 -07 000000437 INF: FPGA: Recv ZSGSRD 30250
17-03-18 06:28:07.024 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:07.024 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:28:07.024 -07 000000501 INF: FPGA: Recv ZPIEZORD 26044
17-03-18 06:28:07.034 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:07.034 -07 000000569 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.489 V. Piezo Error = -9.3 V.
17-03-18 06:28:07.034 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30255 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30256 (-133.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30250 (-133.9 uncal um), Max = 30261 (-133.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:28:07.034 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30255, posNoise = 6, negNoise = 5
17-03-18 06:28:07.034 -07 000000569 INF: Z Motor: After move to -0.134672, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:28:07.034 -07 000000569 INF: Z Motor: Settle wait time = 1662 ms, measure time = 111 ms (allowed 150 ms), total time = 1773 ms
17-03-18 06:28:07.034 -07 000000569 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:28:07.074 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1815 ms
17-03-18 06:28:07.074 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:28:07.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:28:07.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:28:07.074 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:28:07.074 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:28:07.074 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:28:07.074 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:28:07.074 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:28:07.074 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:28:07.084 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:28:07.084 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:28:07.084 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:28:07.084 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:28:07.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:28:07.134 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:28:07.434 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:28:07.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:28:07.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:28:07.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 06:28:07.474 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:28:07.474 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 06:28:07.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:28:07.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:28:07.554 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:07.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:28:07.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:28:07.574 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:28:07.574 -07 000000501 INF: Autofocus start
17-03-18 06:28:07.574 -07 000000501 INF: MeasureProfile start
17-03-18 06:28:07.574 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:28:07.584 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:28:07.584 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:28:07.584 -07 000000501 INF: MeasureProfile done
17-03-18 06:28:07.584 -07 000000501 INF: X=-3  Z correction [um]=-0.01800644
17-03-18 06:28:07.584 -07 000000501 INF: Autofocus finished
17-03-18 06:28:07.784 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:28:07.784 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:28:07.784 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134687890360113. ----------
17-03-18 06:28:07.794 -07 000000610 INF: Cycle	149	Tile	17	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:28:07.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27928, sync = True, waitForSettling = True)
17-03-18 06:28:07.794 -07 000000610 INF: Z Motor: Moving to -0.127846 mm, started at -0.134688 mm, distance = 6.84 um
17-03-18 06:28:07.794 -07 000000610 INF: FPGA: Xmit ZDACW 27928\n [Z Motor]
17-03-18 06:28:07.794 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:28:07.804 -07 000000610 INF: FPGA: 'ZDACW 27928' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:28:07.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:28:07.804 -07 000000629 INF: FPGA: Recv ZDACR 27928
17-03-18 06:28:07.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:07.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:28:07.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:07.964 -07 000000501 INF: FPGA: Recv ZSGSRD 29189
17-03-18 06:28:07.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:07.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:07.974 -07 000000629 INF: FPGA: Recv ZSGSRD 29190
17-03-18 06:28:07.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:07.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:07.984 -07 000000437 INF: FPGA: Recv ZSGSRD 29190
17-03-18 06:28:07.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:07.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:07.994 -07 000000461 INF: FPGA: Recv ZSGSRD 29191
17-03-18 06:28:08.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:08.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:08.004 -07 000000437 INF: FPGA: Recv ZSGSRD 29189
17-03-18 06:28:08.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:08.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:08.014 -07 000000461 INF: FPGA: Recv ZSGSRD 29190
17-03-18 06:28:08.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:28:08.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:08.024 -07 000000501 INF: FPGA: Recv ZSGSRD 29189
17-03-18 06:28:08.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:08.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:08.034 -07 000000569 INF: FPGA: Recv ZSGSRD 29194
17-03-18 06:28:08.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:08.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:08.044 -07 000000474 INF: FPGA: Recv ZSGSRD 29189
17-03-18 06:28:08.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:08.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:08.054 -07 000000585 INF: FPGA: Recv ZSGSRD 29190
17-03-18 06:28:08.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:08.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:28:08.064 -07 000000569 INF: FPGA: Recv ZPIEZORD 24630
17-03-18 06:28:08.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:08.074 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -10.0 V.
17-03-18 06:28:08.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29190 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29190 (-127.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29189 (-127.1 uncal um), Max = 29194 (-127.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-18 06:28:08.074 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29190, posNoise = 4, negNoise = 1
17-03-18 06:28:08.074 -07 000000610 INF: Z Motor: After move to -0.127846, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:28:08.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:28:08.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:28:08.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:28:08.074 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:28:08.074 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:28:08.074 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:28:08.074 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:28:08.074 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:28:08.074 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:28:08.074 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:28:08.074 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:28:08.074 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:28:08.074 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:28:08.084 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:28:08.084 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:28:08.084 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:28:08.084 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:28:08.094 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:28:08.094 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:28:08.094 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:28:08.094 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:28:08.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28105 150\n [Camera]
17-03-18 06:28:08.304 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:28:08.754 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:28:08.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:28:08.764 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:28:08.764 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:28:08.764 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:28:08.764 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:28:08.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:28:08.764 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:28:08.764 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:28:08.764 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:28:08.954 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28105 844
17-03-18 06:28:09.104 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:28:09.154 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:28:09.154 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:28:09.154 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:09.154 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:28:09.154 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:28:09.154 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:09.164 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:28:09.164 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:28:09.164 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:28:09.164 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:28:09.324 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:28:09.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:28:09.324 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:28:09.324 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:28:09.324 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:28:09.324 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:28:09.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:28:09.324 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:28:09.324 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:28:09.324 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:28:09.514 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:28:09.514 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:28:09.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28105 150' command took 2 ms to send, 1405 ms to get response, and 1415 ms overall
17-03-18 06:28:09.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:28:09.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.127846104429137. ------
17-03-18 06:28:09.524 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:28:09.524 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13377 mm
17-03-18 06:28:09.524 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:28:09.524 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:28:09.524 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:28:09.524 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29223, sync = True, waitForSettling = False)
17-03-18 06:28:09.524 -07 000000462 INF: Z Motor: Moving to -0.133774 mm, started at -0.127846 mm, distance = -5.93 um
17-03-18 06:28:09.524 -07 000000501 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 06:28:09.534 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:28:09.534 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:09.544 -07 000000462 INF: FPGA: Xmit ZDACW 29223\n [Z Motor]
17-03-18 06:28:09.554 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:28:09.724 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:28:09.724 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:28:09.724 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:09.734 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:28:09.734 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:28:09.734 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:09.734 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:28:09.734 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:28:09.734 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:28:09.744 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:28:09.754 -07 000000592 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:28:09.754 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:28:09.754 -07 000000462 INF: FPGA: 'ZDACW 29223' command took 0 ms to send, 201 ms to get response, and 225 ms overall
17-03-18 06:28:09.754 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:28:09.754 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 211 ms to get response, and 224 ms overall
17-03-18 06:28:09.754 -07 000000501 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:09.754 -07 000000501 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:28:09.754 -07 000000501 INF: Y Motor: Moving 1356 steps-35
17-03-18 06:28:09.754 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:28:09.754 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:28:09.754 -07 000000592 INF: FPGA: Recv ZDACR 29223
17-03-18 06:28:09.764 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:28:09.764 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:28:09.764 -07 000000462 INF: Z Motor: MoveAbsStepped took 234 ms (did NOT wait for settling yet))
17-03-18 06:28:10.134 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:28:10.134 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 06:28:10.184 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:10.184 -07 000000462 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:28:10.194 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:10.194 -07 000000501 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:10.194 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:28:10.194 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.847 mm, average velocity = 2.201 mm/sec
17-03-18 06:28:11.144 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:11.144 -07 000000462 INF: FPGA: Recv YRDPOS 151568
17-03-18 06:28:11.154 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:11.154 -07 000000501 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:11.174 -07 000000501 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:28:11.174 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:28:11.174 -07 000000501 INF: Y Motor: Moved to 74.0078 after 1651 ms (table move)
17-03-18 06:28:11.184 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133774 mm (DAC = 29223)
17-03-18 06:28:11.184 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:11.184 -07 000000592 INF: FPGA: Recv ZSGSRD 30120
17-03-18 06:28:11.194 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:11.194 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:11.194 -07 000000585 INF: FPGA: Recv ZSGSRD 30112
17-03-18 06:28:11.204 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:11.204 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:11.204 -07 000000462 INF: FPGA: Recv ZSGSRD 30112
17-03-18 06:28:11.214 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:11.214 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:11.214 -07 000000462 INF: FPGA: Recv ZSGSRD 30114
17-03-18 06:28:11.224 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:11.224 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:11.224 -07 000000592 INF: FPGA: Recv ZSGSRD 30108
17-03-18 06:28:11.234 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:11.234 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:11.234 -07 000000592 INF: FPGA: Recv ZSGSRD 30110
17-03-18 06:28:11.244 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:11.244 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:11.244 -07 000000501 INF: FPGA: Recv ZSGSRD 30110
17-03-18 06:28:11.254 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:11.254 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:11.254 -07 000000585 INF: FPGA: Recv ZSGSRD 30114
17-03-18 06:28:11.264 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:11.264 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:11.264 -07 000000501 INF: FPGA: Recv ZSGSRD 30122
17-03-18 06:28:11.274 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:11.274 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:11.274 -07 000000462 INF: FPGA: Recv ZSGSRD 30115
17-03-18 06:28:11.284 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:11.284 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:28:11.284 -07 000000585 INF: FPGA: Recv ZPIEZORD 25888
17-03-18 06:28:11.294 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:11.294 -07 000000629 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.459 V. Piezo Error = -9.3 V.
17-03-18 06:28:11.294 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30114 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30113 (-133.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30108 (-133.0 uncal um), Max = 30122 (-133.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:28:11.294 -07 000000629 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30114, posNoise = 8, negNoise = 6
17-03-18 06:28:11.294 -07 000000629 INF: Z Motor: After move to -0.133774, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:28:11.294 -07 000000629 INF: Z Motor: Settle wait time = 1654 ms, measure time = 110 ms (allowed 150 ms), total time = 1764 ms
17-03-18 06:28:11.294 -07 000000629 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 06:28:11.334 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1807 ms
17-03-18 06:28:11.334 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:28:11.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:28:11.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:28:11.334 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:28:11.334 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:28:11.334 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:28:11.334 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:28:11.334 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:28:11.334 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:28:11.344 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:28:11.344 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:28:11.344 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:28:11.344 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:28:11.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:28:11.394 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:28:11.694 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:28:11.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:28:11.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:28:11.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 06:28:11.734 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:28:11.734 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:28:11.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:28:11.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:28:11.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:11.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:28:11.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:28:11.834 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:28:11.834 -07 000000462 INF: Autofocus start
17-03-18 06:28:11.834 -07 000000462 INF: MeasureProfile start
17-03-18 06:28:11.834 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:28:11.844 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:28:11.844 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:28:11.844 -07 000000462 INF: MeasureProfile done
17-03-18 06:28:11.844 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:28:11.844 -07 000000462 INF: Autofocus finished
17-03-18 06:28:11.864 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:28:11.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:28:11.914 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.009895,
17-03-18 06:28:12.044 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:28:12.044 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:28:12.044 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.133782076448124. ----------
17-03-18 06:28:12.054 -07 000000610 INF: Cycle	149	Tile	18	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:28:12.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27730, sync = True, waitForSettling = True)
17-03-18 06:28:12.054 -07 000000610 INF: Z Motor: Moving to -0.126940 mm, started at -0.133782 mm, distance = 6.84 um
17-03-18 06:28:12.054 -07 000000610 INF: FPGA: Xmit ZDACW 27730\n [Z Motor]
17-03-18 06:28:12.054 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:28:12.064 -07 000000610 INF: FPGA: 'ZDACW 27730' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:28:12.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:28:12.064 -07 000000591 INF: FPGA: Recv ZDACR 27730
17-03-18 06:28:12.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:12.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:28:12.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:12.224 -07 000000592 INF: FPGA: Recv ZSGSRD 29051
17-03-18 06:28:12.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:12.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:12.254 -07 000000462 INF: FPGA: Recv ZSGSRD 29049
17-03-18 06:28:12.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:28:12.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:12.264 -07 000000501 INF: FPGA: Recv ZSGSRD 29051
17-03-18 06:28:12.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:28:12.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:12.294 -07 000000585 INF: FPGA: Recv ZSGSRD 29049
17-03-18 06:28:12.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:28:12.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:12.314 -07 000000462 INF: FPGA: Recv ZSGSRD 29049
17-03-18 06:28:12.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:28:12.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:12.324 -07 000000437 INF: FPGA: Recv ZSGSRD 29047
17-03-18 06:28:12.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:12.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:12.334 -07 000000592 INF: FPGA: Recv ZSGSRD 29044
17-03-18 06:28:12.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:12.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:12.344 -07 000000579 INF: FPGA: Recv ZSGSRD 29047
17-03-18 06:28:12.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:12.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:12.354 -07 000000462 INF: FPGA: Recv ZSGSRD 29057
17-03-18 06:28:12.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:12.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:12.364 -07 000000437 INF: FPGA: Recv ZSGSRD 29051
17-03-18 06:28:12.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:12.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:28:12.374 -07 000000591 INF: FPGA: Recv ZPIEZORD 24468
17-03-18 06:28:12.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:12.384 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.231 V. Piezo Error = -10.0 V.
17-03-18 06:28:12.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29050 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29049 (-126.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29044 (-126.1 uncal um), Max = 29057 (-126.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:28:12.384 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29050, posNoise = 7, negNoise = 6
17-03-18 06:28:12.384 -07 000000610 INF: Z Motor: After move to -0.126940, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:28:12.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-18 06:28:12.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:28:12.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:28:12.384 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:28:12.384 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:28:12.384 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:28:12.384 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:28:12.384 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:28:12.384 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:28:12.384 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:28:12.384 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:28:12.384 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:28:12.384 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:28:12.394 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:28:12.394 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:28:12.394 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:28:12.394 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:28:12.394 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:28:12.394 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:28:12.394 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:28:12.394 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:28:12.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 27907 150\n [Camera]
17-03-18 06:28:12.604 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:28:13.064 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:28:13.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:28:13.064 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:28:13.064 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:28:13.064 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 06:28:13.064 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:28:13.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:28:13.064 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:28:13.064 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:28:13.064 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 06:28:13.254 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27907 844
17-03-18 06:28:13.404 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:28:13.464 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:28:13.464 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:28:13.464 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:13.464 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:28:13.464 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:28:13.464 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:28:13.464 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:28:13.464 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:13.464 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:28:13.474 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:28:13.624 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:28:13.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:28:13.624 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:28:13.624 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:28:13.624 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:28:13.634 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:28:13.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:28:13.634 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:28:13.634 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:28:13.634 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:28:13.814 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-18 06:28:13.814 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:28:13.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 27907 150' command took 2 ms to send, 1409 ms to get response, and 1415 ms overall
17-03-18 06:28:13.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:28:13.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.126946714729291. ------
17-03-18 06:28:13.824 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:28:13.824 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13335 mm
17-03-18 06:28:13.824 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:28:13.824 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:28:13.834 -07 000000467 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 06:28:13.834 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:14.034 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:28:14.034 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:28:14.034 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:14.034 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:28:14.034 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:28:14.034 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:14.034 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:28:14.034 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:28:14.034 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:28:14.044 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:28:14.054 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29131, sync = True, waitForSettling = False)
17-03-18 06:28:14.054 -07 000000462 INF: Z Motor: Moving to -0.133353 mm, started at -0.126947 mm, distance = -6.41 um
17-03-18 06:28:14.054 -07 000000462 INF: FPGA: Xmit ZDACW 29131\n [Z Motor]
17-03-18 06:28:14.054 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:28:14.054 -07 000000591 INF: FPGA: Recv YRDPOS 151568
17-03-18 06:28:14.054 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 223 ms to get response, and 227 ms overall
17-03-18 06:28:14.054 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:28:14.054 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 213 ms to get response, and 223 ms overall
17-03-18 06:28:14.054 -07 000000467 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:14.054 -07 000000467 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:28:14.054 -07 000000467 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:28:14.064 -07 000000462 INF: FPGA: 'ZDACW 29131' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:28:14.064 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:28:14.074 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:28:14.084 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:28:14.084 -07 000000591 INF: FPGA: Recv ZDACR 29131
17-03-18 06:28:14.094 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:28:14.094 -07 000000462 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 06:28:14.264 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:28:14.264 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 204 ms overall
17-03-18 06:28:14.444 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 06:28:14.444 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 06:28:14.484 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:14.484 -07 000000569 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:28:14.494 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:14.494 -07 000000467 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:14.494 -07 000000467 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 06:28:14.494 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.845 mm, average velocity = 2.172 mm/sec
17-03-18 06:28:15.444 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:15.444 -07 000000569 INF: FPGA: Recv YRDPOS 153255
17-03-18 06:28:15.454 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:15.454 -07 000000467 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:15.474 -07 000000467 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:28:15.474 -07 000000467 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:28:15.474 -07 000000467 INF: Y Motor: Moved to 74.8315 after 1642 ms (table move)
17-03-18 06:28:15.474 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133353 mm (DAC = 29131)
17-03-18 06:28:15.474 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:15.474 -07 000000591 INF: FPGA: Recv ZSGSRD 30049
17-03-18 06:28:15.484 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:28:15.484 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:15.484 -07 000000591 INF: FPGA: Recv ZSGSRD 30046
17-03-18 06:28:15.494 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:15.494 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:15.494 -07 000000467 INF: FPGA: Recv ZSGSRD 30045
17-03-18 06:28:15.504 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:15.504 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:15.504 -07 000000569 INF: FPGA: Recv ZSGSRD 30051
17-03-18 06:28:15.514 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:15.514 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:15.514 -07 000000467 INF: FPGA: Recv ZSGSRD 30048
17-03-18 06:28:15.524 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:15.524 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:15.524 -07 000000591 INF: FPGA: Recv ZSGSRD 30052
17-03-18 06:28:15.534 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:15.534 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:15.534 -07 000000462 INF: FPGA: Recv ZSGSRD 30049
17-03-18 06:28:15.544 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:15.544 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:15.544 -07 000000569 INF: FPGA: Recv ZSGSRD 30046
17-03-18 06:28:15.554 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:15.554 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:15.554 -07 000000591 INF: FPGA: Recv ZSGSRD 30044
17-03-18 06:28:15.564 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:15.564 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:15.564 -07 000000591 INF: FPGA: Recv ZSGSRD 30042
17-03-18 06:28:15.574 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:15.574 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:28:15.574 -07 000000467 INF: FPGA: Recv ZPIEZORD 25855
17-03-18 06:28:15.584 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:15.584 -07 000000629 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.445 V. Piezo Error = -9.2 V.
17-03-18 06:28:15.584 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30047 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30047 (-132.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30042 (-132.5 uncal um), Max = 30052 (-132.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:28:15.584 -07 000000629 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30047, posNoise = 5, negNoise = 5
17-03-18 06:28:15.584 -07 000000629 INF: Z Motor: After move to -0.133353, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:28:15.584 -07 000000629 INF: Z Motor: Settle wait time = 1424 ms, measure time = 106 ms (allowed 150 ms), total time = 1530 ms
17-03-18 06:28:15.584 -07 000000629 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:28:15.634 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1802 ms
17-03-18 06:28:15.634 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:28:15.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:28:15.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:28:15.634 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:28:15.634 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:28:15.634 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:28:15.634 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:28:15.634 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:28:15.634 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:28:15.644 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:28:15.644 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:28:15.644 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:28:15.644 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:28:15.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:28:15.694 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:28:15.994 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:28:15.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:28:15.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:28:15.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 06:28:16.034 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:28:16.034 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 06:28:16.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:28:16.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 06:28:16.114 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:16.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:28:16.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 06:28:16.134 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:28:16.134 -07 000000569 INF: Autofocus start
17-03-18 06:28:16.134 -07 000000569 INF: MeasureProfile start
17-03-18 06:28:16.134 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:28:16.144 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:28:16.144 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:28:16.144 -07 000000569 INF: MeasureProfile done
17-03-18 06:28:16.144 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:28:16.144 -07 000000569 INF: Autofocus finished
17-03-18 06:28:16.344 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:28:16.344 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:28:16.344 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.133351654234626. ----------
17-03-18 06:28:16.344 -07 000000610 INF: Cycle	149	Tile	19	Exposure Settings		A	459	G	221	T	221	C	459
17-03-18 06:28:16.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27626, sync = True, waitForSettling = True)
17-03-18 06:28:16.354 -07 000000610 INF: Z Motor: Moving to -0.126464 mm, started at -0.133352 mm, distance = 6.89 um
17-03-18 06:28:16.354 -07 000000610 INF: FPGA: Xmit ZDACW 27626\n [Z Motor]
17-03-18 06:28:16.354 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:28:16.364 -07 000000610 INF: FPGA: 'ZDACW 27626' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:16.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:28:16.364 -07 000000592 INF: FPGA: Recv ZDACR 27626
17-03-18 06:28:16.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:16.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:28:16.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:16.524 -07 000000591 INF: FPGA: Recv ZSGSRD 28973
17-03-18 06:28:16.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:28:16.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:16.534 -07 000000569 INF: FPGA: Recv ZSGSRD 28968
17-03-18 06:28:16.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:16.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:16.544 -07 000000467 INF: FPGA: Recv ZSGSRD 28970
17-03-18 06:28:16.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:16.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:16.554 -07 000000462 INF: FPGA: Recv ZSGSRD 28978
17-03-18 06:28:16.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:16.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:16.564 -07 000000629 INF: FPGA: Recv ZSGSRD 28979
17-03-18 06:28:16.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:16.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:16.574 -07 000000569 INF: FPGA: Recv ZSGSRD 28965
17-03-18 06:28:16.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:16.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:16.584 -07 000000467 INF: FPGA: Recv ZSGSRD 28980
17-03-18 06:28:16.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:16.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:16.594 -07 000000462 INF: FPGA: Recv ZSGSRD 28975
17-03-18 06:28:16.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:16.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:16.604 -07 000000591 INF: FPGA: Recv ZSGSRD 28975
17-03-18 06:28:16.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:16.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:28:16.614 -07 000000461 INF: FPGA: Recv ZSGSRD 28974
17-03-18 06:28:16.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:16.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:28:16.624 -07 000000591 INF: FPGA: Recv ZPIEZORD 24408
17-03-18 06:28:16.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:16.634 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.215 V. Piezo Error = -10.0 V.
17-03-18 06:28:16.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28974 (-125.7 uncal um), Error = 0.8 uncal um, Median = 28974 (-125.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 28965 (-125.6 uncal um), Max = 28980 (-125.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:28:16.634 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28974, posNoise = 6, negNoise = 9
17-03-18 06:28:16.634 -07 000000610 INF: Z Motor: After move to -0.126464, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:28:16.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:28:16.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:28:16.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:28:16.634 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:28:16.634 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:28:16.634 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:28:16.634 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:28:16.634 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:28:16.634 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:28:16.634 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:28:16.634 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:28:16.634 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:28:16.634 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:28:16.644 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 06:28:16.644 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:28:16.644 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:28:16.644 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:28:16.654 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:28:16.654 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:28:16.654 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:28:16.654 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:28:16.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 27803 150\n [Camera]
17-03-18 06:28:16.854 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:28:16.864 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:28:16.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 148. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:28:17.284 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.014009,
17-03-18 06:28:17.314 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-18 06:28:17.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-18 06:28:17.314 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:28:17.314 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:28:17.314 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:28:17.314 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-18 06:28:17.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-18 06:28:17.314 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:28:17.314 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:28:17.314 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:28:17.504 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27803 844
17-03-18 06:28:17.654 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-18 06:28:17.714 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:28:17.714 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:28:17.714 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:17.714 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:28:17.714 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:28:17.714 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:17.724 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:28:17.724 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:28:17.724 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:28:17.734 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:28:17.874 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-18 06:28:17.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-18 06:28:17.874 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:28:17.874 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:28:17.874 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 06:28:17.884 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-18 06:28:17.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-18 06:28:17.884 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:28:17.884 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:28:17.884 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 06:28:18.074 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:28:18.074 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:28:18.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 27803 150' command took 2 ms to send, 1412 ms to get response, and 1417 ms overall
17-03-18 06:28:18.284 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 06:28:18.284 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:28:18.284 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:18.284 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 06:28:18.284 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:28:18.284 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:28:18.294 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:28:18.294 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:28:18.294 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 06:28:18.294 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:28:18.294 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:28:18.334 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:28:18.334 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:28:18.374 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:28:18.394 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-18 06:28:18.394 -07 000000610 INF: Imaging Cycle 149: ScanTilesCommand Cycle 149 time end. Duration was 166412 ms.
17-03-18 06:28:18.394 -07 000000610 INF: =================== Cycle #149 ===================
17-03-18 06:28:18.394 -07 000000610 INF: ===================  ===================
17-03-18 06:28:18.394 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:28:18.394 -07 000000461 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 06:28:18.404 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:28:18.404 -07 000000480 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 06:28:18.404 -07 000000480 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 149, FrontChillerTemperature: 4.014009, FrontChillerHeatSinkTemperature: 0.497797, AmbientTemperature: 18.68782, FlowCellCompartmentTemperature: 22.00417, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.41668, GreenLEDSensorTemperature: 27.42056, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 06:28:18.524 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.