17-03-17 18:28:44.948 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:28:44.948 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 18:28:44.948 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 18:28:44.948 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:44.948 -07 000000547 INF: FPGA: Recv YRDPOS 153258
17-03-17 18:28:44.958 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:28:44.958 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:44.958 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 18:28:44.958 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 18:28:44.958 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 18:28:45.068 -07 000000608 INF: FPGA: Recv YMVTO 154377 870
17-03-17 18:28:45.068 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 116 ms overall
17-03-17 18:28:45.068 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 18:28:45.068 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 18:28:45.068 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 18:28:46.438 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.969015,
17-03-17 18:28:46.598 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:28:46.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=122, R2=129, Total=251. Warn if over 250 bubbles per interval.
17-03-17 18:28:48.068 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:28:48.068 -07 000000618 INF: FPGA: Recv YRDPOS 154379
17-03-17 18:28:48.078 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:28:48.078 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:28:48.088 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:28:48.088 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 18:28:48.088 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3143 ms
17-03-17 18:28:48.098 -07 000000610 INF: =================== Cycle #14, Flow Cell Temp 60° ===================
17-03-17 18:28:48.098 -07 000000610 INF: =================== Cycle #14, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 18:28:48.098 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 18:28:48.098 -07 000000618 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:28:48.108 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:28:48.108 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:28:48.108 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-17 18:28:48.118 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:28:48.118 -07 000000610 INF: =================== Cycle #14, Flow Cell Temp 60° ===================
17-03-17 18:28:48.118 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:28:48.118 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:28:48.118 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:28:48.148 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:28:48.148 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 18:28:48.148 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:28:48.768 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:28:48.788 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:28:48.788 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:28:48.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:28:48.858 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:28:48.858 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:28:48.958 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:28:48.958 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:28:48.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:28:48.988 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:28:48.988 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:28:48.988 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:28:49.118 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:28:49.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:28:51.598 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 18:28:51.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=124, R2=131, Total=255. Warn if over 250 bubbles per interval.
17-03-17 18:28:51.798 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.96762,
17-03-17 18:28:52.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:28:52.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:28:52.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:28:52.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:28:53.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:28:53.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:28:53.218 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:28:53.218 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:28:53.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:28:53.378 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:28:53.378 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:28:53.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:28:53.538 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:28:53.538 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:28:53.538 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:28:53.668 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:28:53.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:28:54.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:28:54.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:28:54.158 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:28:54.158 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:28:55.378 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:28:55.378 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 18:28:55.378 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:28:55.398 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:28:55.398 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 18:28:55.398 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 18:28:55.528 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:28:56.088 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 18:28:56.088 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 18:28:56.138 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:28:56.158 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:28:56.158 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:28:56.258 -07 000000610 INF: =================== Cycle #14, Pumping Reagent CMS (4) ===================
17-03-17 18:28:56.258 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:28:56.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:28:56.318 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:28:56.318 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:28:56.318 -07 000000610 INF: =================== Cycle #14, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 18:28:56.448 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:28:56.488 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:28:56.598 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 18:28:56.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=126, R2=131, Total=257. Warn if over 250 bubbles per interval.
17-03-17 18:28:57.158 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.979922,
17-03-17 18:28:57.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:28:57.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:28:58.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:28:58.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:28:58.408 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 18:28:58.408 -07 000000610 INF: =================== Cycle #14, Pumping Reagent CMS (4) ===================
17-03-17 18:28:58.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:28:58.568 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:28:58.568 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:28:58.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:28:58.728 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:28:58.728 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:28:58.728 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:28:58.858 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:28:58.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:28:59.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:28:59.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:28:59.348 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:28:59.348 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:29:00.568 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:29:00.568 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:29:00.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:29:00.588 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 18:29:00.588 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 18:29:00.588 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 18:29:00.738 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:29:00.758 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 18:29:00.758 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 18:29:00.808 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:29:00.828 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:29:00.828 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:29:00.928 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:29:00.928 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:29:00.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:29:00.958 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:29:00.958 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:29:00.958 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:29:01.088 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:29:01.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:29:01.598 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 18:29:01.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=126, R2=133, Total=259. Warn if over 250 bubbles per interval.
17-03-17 18:29:01.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:02.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:29:02.028 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 18:29:02.028 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:29:02.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:29:02.188 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:29:02.188 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:29:02.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:29:02.348 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:29:02.348 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:29:02.348 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:29:02.478 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:29:02.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:29:02.518 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.988112,
17-03-17 18:29:02.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:02.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:29:02.968 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:29:02.968 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:29:02.968 -07 000000608 INF: WaitCommand(10000) start
17-03-17 18:29:02.968 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:29:02.968 -07 000000424 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:29:04.188 -07 000000424 INF: AsyncDelayTimer waited 1213ms
17-03-17 18:29:04.188 -07 000000424 INF: LanePump: Xmit /1?\r
17-03-17 18:29:04.218 -07 000000424 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:29:04.218 -07 000000424 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:29:04.348 -07 000000424 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:29:04.388 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:29:05.918 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:05.948 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:29:06.368 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:06.398 -07 000000424 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:29:06.398 -07 000000424 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:29:06.398 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:29:06.398 -07 000000424 INF: ===================  ===================
17-03-17 18:29:06.598 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:29:06.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=126, R2=133, Total=259. Warn if over 250 bubbles per interval.
17-03-17 18:29:08.348 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.003063,
17-03-17 18:29:11.598 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:29:11.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=126, R2=133, Total=259. Warn if over 250 bubbles per interval.
17-03-17 18:29:12.978 -07 000000608 INF: WaitCommand(10000) end
17-03-17 18:29:12.978 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:29:12.978 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 18:29:12.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:29:13.008 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:29:13.008 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:29:13.008 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:29:13.138 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 18:29:13.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:29:13.708 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.996267,
17-03-17 18:29:16.598 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:29:16.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=126, R2=133, Total=259. Warn if over 250 bubbles per interval.
17-03-17 18:29:19.068 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.005817,
17-03-17 18:29:19.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:19.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:29:19.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:19.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:29:20.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:20.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:29:20.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:20.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:29:21.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:21.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:29:21.138 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 18:29:21.138 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:29:21.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:29:21.298 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:29:21.298 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:29:21.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:29:21.458 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:29:21.458 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:29:21.458 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:29:21.588 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:29:21.598 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 18:29:21.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=128, R2=135, Total=263. Warn if over 250 bubbles per interval.
17-03-17 18:29:21.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:29:22.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:22.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:29:22.078 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:29:22.078 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:29:23.298 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:29:23.298 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 18:29:23.298 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:29:23.318 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:29:23.318 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 18:29:23.318 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 18:29:23.528 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:29:23.548 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 18:29:23.548 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 18:29:23.598 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:29:23.618 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:29:23.618 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:29:23.718 -07 000000610 INF: =================== Cycle #14, Pumping Reagent IMT (1) ===================
17-03-17 18:29:23.718 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:29:23.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:29:23.748 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 18:29:23.748 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 18:29:23.748 -07 000000610 INF: =================== Cycle #14, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 18:29:23.878 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:29:23.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:29:25.248 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.993549,
17-03-17 18:29:25.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:25.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:29:25.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:25.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:29:25.838 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 18:29:25.838 -07 000000610 INF: =================== Cycle #14, Pumping Reagent IMT (1) ===================
17-03-17 18:29:25.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:29:25.998 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:29:25.998 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:29:26.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:29:26.158 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:29:26.158 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:29:26.158 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:29:26.288 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:29:26.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:29:26.598 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:29:26.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=128, R2=135, Total=263. Warn if over 250 bubbles per interval.
17-03-17 18:29:26.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:26.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:29:26.778 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:29:26.778 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:29:27.998 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:29:27.998 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:29:27.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:29:28.018 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 18:29:28.018 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 18:29:28.018 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:29:28.248 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:29:28.268 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 18:29:28.268 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 18:29:28.318 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:29:28.338 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:29:28.338 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:29:28.438 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:29:28.438 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:29:28.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:29:28.468 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 18:29:28.468 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 18:29:28.468 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:29:28.598 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:29:28.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:29:29.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:29.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:29:29.538 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:29:29.538 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:29:29.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:29:29.698 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:29:29.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:29:29.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:29:29.858 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:29:29.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:29:29.858 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:29:29.988 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:29:30.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:29:30.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:29:30.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:29:30.478 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 18:29:30.478 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:29:30.478 -07 000000610 INF: =================== Cycle #14, Flow Cell Temp 65° ===================
17-03-17 18:29:30.478 -07 000000610 INF: =================== Cycle #14, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 18:29:30.478 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 18:29:30.478 -07 000000431 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:29:30.488 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:29:30.488 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:29:30.488 -07 000000475 INF: FPGA: Recv TEC2EN 
17-03-17 18:29:30.498 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:29:30.498 -07 000000610 INF: =================== Cycle #14, Flow Cell Temp 65° ===================
17-03-17 18:29:30.498 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:29:30.498 -07 000000610 INF: WaitCommand(30000) start
17-03-17 18:29:30.608 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.988112,
17-03-17 18:29:31.598 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:29:31.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=128, R2=135, Total=263. Warn if over 250 bubbles per interval.
17-03-17 18:29:36.598 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 18:29:36.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=135, Total=264. Warn if over 250 bubbles per interval.
17-03-17 18:29:36.718 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.018051,
17-03-17 18:29:41.598 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:29:41.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=135, Total=264. Warn if over 250 bubbles per interval.
17-03-17 18:29:42.078 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.020806,
17-03-17 18:29:46.598 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:29:46.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=136, Total=265. Warn if over 250 bubbles per interval.
17-03-17 18:29:47.438 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.009895,
17-03-17 18:29:51.598 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:29:51.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=136, Total=265. Warn if over 250 bubbles per interval.
17-03-17 18:29:52.798 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.018051,
17-03-17 18:29:56.598 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:29:56.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=136, Total=265. Warn if over 250 bubbles per interval.
17-03-17 18:29:58.808 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.989471,
17-03-17 18:30:00.508 -07 000000610 INF: WaitCommand(30000) end
17-03-17 18:30:00.508 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:30:00.508 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 18:30:00.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:30:00.638 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 18:30:00.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 18:30:00.638 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:30:00.768 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 18:30:00.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:30:01.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:01.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:01.378 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 18:30:01.378 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:30:01.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:30:01.538 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:30:01.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:30:01.598 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:30:01.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=136, Total=265. Warn if over 250 bubbles per interval.
17-03-17 18:30:01.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:30:01.698 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:30:01.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:30:01.698 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:30:01.828 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:30:01.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:02.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:02.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:02.318 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:30:02.318 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:30:02.318 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:30:02.318 -07 000000618 INF: WaitCommand(30000) start
17-03-17 18:30:02.318 -07 000000438 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:30:03.538 -07 000000438 INF: AsyncDelayTimer waited 1215ms
17-03-17 18:30:03.538 -07 000000438 INF: LanePump: Xmit /1?\r
17-03-17 18:30:03.568 -07 000000438 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 18:30:03.568 -07 000000438 INF: LanePump: Current Position of Pump is: 1920
17-03-17 18:30:03.698 -07 000000438 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:30:03.738 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:30:04.168 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.007176,
17-03-17 18:30:06.078 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:06.108 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:30:06.528 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:06.558 -07 000000438 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:06.558 -07 000000438 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 18:30:06.558 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:30:06.558 -07 000000438 INF: ===================  ===================
17-03-17 18:30:06.598 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:30:06.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=136, Total=265. Warn if over 250 bubbles per interval.
17-03-17 18:30:09.538 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.978563,
17-03-17 18:30:11.598 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:30:11.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=136, Total=265. Warn if over 250 bubbles per interval.
17-03-17 18:30:14.908 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.996267,
17-03-17 18:30:16.598 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:30:16.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=136, Total=265. Warn if over 250 bubbles per interval.
17-03-17 18:30:20.268 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.033041,
17-03-17 18:30:21.598 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:30:21.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=136, Total=265. Warn if over 250 bubbles per interval.
17-03-17 18:30:25.628 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.05755,
17-03-17 18:30:26.598 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:30:26.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=136, Total=265. Warn if over 250 bubbles per interval.
17-03-17 18:30:30.988 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.019446,
17-03-17 18:30:31.598 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:30:31.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=136, Total=265. Warn if over 250 bubbles per interval.
17-03-17 18:30:32.328 -07 000000618 INF: WaitCommand(30000) end
17-03-17 18:30:32.328 -07 000000610 INF: =================== Cycle #14, Flow Cell Temp 22° ===================
17-03-17 18:30:32.328 -07 000000610 INF: =================== Cycle #14, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 18:30:32.328 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 18:30:32.338 -07 000000424 INF: FPGA: Recv TEC2TEMP 
17-03-17 18:30:32.338 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:30:32.338 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 18:30:32.338 -07 000000012 INF: FPGA: Recv TEC2EN 
17-03-17 18:30:32.348 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:30:32.348 -07 000000610 INF: =================== Cycle #14, Flow Cell Temp 22° ===================
17-03-17 18:30:32.348 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:30:32.348 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:30:32.348 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 18:30:32.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:30:32.388 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 18:30:32.388 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 18:30:32.388 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:30:32.518 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 18:30:32.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:30:35.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:35.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:30:36.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:36.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:30:36.348 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.023489,
17-03-17 18:30:36.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:36.598 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:30:36.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=137, Total=266. Warn if over 250 bubbles per interval.
17-03-17 18:30:36.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:36.618 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 18:30:36.618 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:30:36.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:30:36.778 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:30:36.778 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:30:36.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:30:36.938 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:30:36.938 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:30:36.938 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:30:37.068 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:30:37.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:37.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:37.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:37.558 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:30:37.558 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:30:38.778 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 18:30:38.778 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 18:30:38.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:30:38.798 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:30:38.798 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 18:30:38.798 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 18:30:38.948 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:30:38.968 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:30:38.968 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:30:39.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:30:39.038 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:30:39.038 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:30:39.138 -07 000000610 INF: =================== Cycle #14, Pumping Reagent USM (2) ===================
17-03-17 18:30:39.138 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 18:30:39.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:30:39.168 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 18:30:39.168 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 18:30:39.168 -07 000000610 INF: =================== Cycle #14, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 18:30:39.298 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 18:30:39.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:30:40.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:40.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:30:41.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:41.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:41.258 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 18:30:41.258 -07 000000610 INF: =================== Cycle #14, Pumping Reagent USM (2) ===================
17-03-17 18:30:41.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:30:41.418 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:30:41.418 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:30:41.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:30:41.578 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:30:41.578 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:30:41.578 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:30:41.598 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:30:41.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=129, R2=137, Total=266. Warn if over 250 bubbles per interval.
17-03-17 18:30:41.708 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:30:41.708 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.015368,
17-03-17 18:30:41.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:42.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:42.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:42.198 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:30:42.198 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:30:43.418 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 18:30:43.418 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 18:30:43.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:30:43.438 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 18:30:43.438 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 18:30:43.438 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 18:30:43.588 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:30:43.608 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 18:30:43.608 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 18:30:43.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:30:43.678 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:30:43.678 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 18:30:43.778 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:30:43.778 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 18:30:43.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:30:43.808 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 18:30:43.808 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 18:30:43.808 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 18:30:43.938 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 18:30:43.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:30:44.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:44.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:44.878 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 18:30:44.878 -07 000000610 INF: =================== Cycle #14, Pumping Reagent PR2 (3) ===================
17-03-17 18:30:45.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:30:45.038 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:30:45.038 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:30:45.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 18:30:45.198 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:30:45.198 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:30:45.198 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 18:30:45.328 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 18:30:45.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:45.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:45.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:45.818 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 18:30:45.818 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:30:45.818 -07 000000475 INF: WaitCommand(10000) start
17-03-17 18:30:45.818 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:30:45.818 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 18:30:46.598 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 18:30:46.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=130, R2=137, Total=267. Warn if over 250 bubbles per interval.
17-03-17 18:30:47.038 -07 000000618 INF: AsyncDelayTimer waited 1216ms
17-03-17 18:30:47.038 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-17 18:30:47.068 -07 000000618 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 18:30:47.068 -07 000000618 INF: LanePump: Current Position of Pump is: 1110
17-03-17 18:30:47.068 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.981281,
17-03-17 18:30:47.198 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 18:30:47.238 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:30:48.768 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:48.798 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 18:30:49.218 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 18:30:49.248 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 18:30:49.248 -07 000000618 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 18:30:49.248 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 18:30:49.248 -07 000000618 INF: ===================  ===================
17-03-17 18:30:51.598 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 18:30:51.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=138, Total=270. Warn if over 250 bubbles per interval.
17-03-17 18:30:52.428 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.975845,
17-03-17 18:30:55.828 -07 000000475 INF: WaitCommand(10000) end
17-03-17 18:30:55.828 -07 000000610 INF: =================== Cycle #14, Imaging ===================
17-03-17 18:30:55.828 -07 000000610 INF: Imaging Cycle 14: ScanTilesCommand Cycle 14 time start.
17-03-17 18:30:55.828 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 18:30:55.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:30:55.858 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 18:30:55.858 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 18:30:55.858 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 18:30:56.158 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 18:30:56.178 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 18:30:56.178 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 18:30:56.228 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 18:30:56.248 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 18:30:56.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:30:56.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:30:56.258 -07 000000429 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 18:30:56.258 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:30:56.258 -07 000000429 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 18:30:56.258 -07 000000475 INF: FPGA: Recv EXLED1ON 
17-03-17 18:30:56.268 -07 000000429 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:30:56.268 -07 000000429 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 18:30:56.268 -07 000000475 INF: FPGA: Recv EXLED1ADCR 22972
17-03-17 18:30:56.278 -07 000000429 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:30:56.278 -07 000000429 INF: RedLED: Using Red data: Photodiode ADC 22972 --> 7.4 mW (old method), or 203.7 mW (new method). Difference = 196.3 mW
17-03-17 18:30:56.278 -07 000000429 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 18:30:56.278 -07 000000608 INF: FPGA: Recv EXLED1OFF 
17-03-17 18:30:56.288 -07 000000429 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:30:56.288 -07 000000429 INF: RedLED: LED was on for 19 ms
17-03-17 18:30:56.288 -07 000000429 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 30 ms.
17-03-17 18:30:56.288 -07 000000429 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 18:30:56.288 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:30:56.288 -07 000000429 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 18:30:56.288 -07 000000415 INF: FPGA: Recv EXLED2ON 
17-03-17 18:30:56.298 -07 000000429 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:30:56.298 -07 000000429 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:30:56.298 -07 000000475 INF: FPGA: Recv EXLED1ADCR 2104
17-03-17 18:30:56.308 -07 000000429 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:30:56.308 -07 000000429 INF: GreenLED: Using Green data: Photodiode ADC 2104 --> 0.9 mW (old method), or 182.8 mW (new method). Difference = 181.9 mW
17-03-17 18:30:56.308 -07 000000429 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 18:30:56.308 -07 000000012 INF: FPGA: Recv EXLED2OFF 
17-03-17 18:30:56.318 -07 000000429 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:30:56.318 -07 000000429 INF: GreenLED: LED was on for 19 ms
17-03-17 18:30:56.318 -07 000000429 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 18:30:56.318 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:30:56.318 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-17 18:30:56.328 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:30:56.328 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 18:30:56.598 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 18:30:56.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=140, Total=272. Warn if over 250 bubbles per interval.
17-03-17 18:30:56.828 -07 000000429 INF: FPGA: Recv EMOUT
17-03-17 18:30:56.828 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:30:56.828 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 18:30:56.828 -07 000000608 INF: FPGA: Recv EMCUR 
17-03-17 18:30:56.838 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:30:56.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:30:56.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.127325743245655. ------
17-03-17 18:30:56.838 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:30:56.838 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17926 mm
17-03-17 18:30:56.838 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:30:56.838 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:30:56.838 -07 000000618 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 18:30:56.838 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 39159, sync = True, waitForSettling = False)
17-03-17 18:30:56.848 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:30:56.848 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:30:56.848 -07 000000608 INF: Z Motor: Moving to -0.179258 mm, started at -0.127326 mm, distance = -51.93 um
17-03-17 18:30:56.848 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:30:56.848 -07 000000424 INF: FPGA: Recv YRDPOS 154379
17-03-17 18:30:56.858 -07 000000608 INF: FPGA: Xmit ZDACW 39159\n [Z Motor]
17-03-17 18:30:56.858 -07 000000618 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:30:56.858 -07 000000618 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:30:56.858 -07 000000618 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 18:30:56.858 -07 000000618 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:30:56.858 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:30:56.868 -07 000000608 INF: FPGA: 'ZDACW 39159' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:30:56.868 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:30:56.878 -07 000000618 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:30:56.888 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:30:56.888 -07 000000623 INF: FPGA: Recv ZDACR 39159
17-03-17 18:30:56.898 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:30:56.898 -07 000000608 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:30:57.068 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:30:57.068 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 18:30:57.788 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.96762,
17-03-17 18:30:58.558 -07 000000012 INF: FPGA: Recv YMVTO 122702 24774
17-03-17 18:30:58.558 -07 000000618 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1705 ms overall
17-03-17 18:30:58.558 -07 000000618 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 18:30:58.558 -07 000000618 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24774 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 18:30:58.558 -07 000000618 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.468 mm, average velocity = 9.072 mm/sec
17-03-17 18:31:01.408 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:01.408 -07 000000512 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:31:01.418 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:01.418 -07 000000618 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:01.438 -07 000000618 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:01.438 -07 000000618 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 18:31:01.438 -07 000000618 INF: Y Motor: Moved to 59.9116 after 4595 ms
17-03-17 18:31:01.438 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179258 mm (DAC = 39159)
17-03-17 18:31:01.438 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:01.438 -07 000000623 INF: FPGA: Recv ZSGSRD 37202
17-03-17 18:31:01.448 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:31:01.448 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:01.448 -07 000000623 INF: FPGA: Recv ZSGSRD 37188
17-03-17 18:31:01.458 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:01.458 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:01.458 -07 000000623 INF: FPGA: Recv ZSGSRD 37194
17-03-17 18:31:01.468 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:01.468 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:01.468 -07 000000618 INF: FPGA: Recv ZSGSRD 37191
17-03-17 18:31:01.478 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:01.478 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:01.478 -07 000000623 INF: FPGA: Recv ZSGSRD 37196
17-03-17 18:31:01.488 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:01.488 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:01.488 -07 000000012 INF: FPGA: Recv ZSGSRD 37194
17-03-17 18:31:01.498 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:01.498 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:01.498 -07 000000618 INF: FPGA: Recv ZSGSRD 37186
17-03-17 18:31:01.508 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:01.508 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:01.508 -07 000000618 INF: FPGA: Recv ZSGSRD 37192
17-03-17 18:31:01.518 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:01.518 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:01.518 -07 000000623 INF: FPGA: Recv ZSGSRD 37191
17-03-17 18:31:01.528 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:01.528 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:01.528 -07 000000618 INF: FPGA: Recv ZSGSRD 37189
17-03-17 18:31:01.538 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:01.538 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:01.538 -07 000000512 INF: FPGA: Recv ZPIEZORD 33497
17-03-17 18:31:01.548 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:01.548 -07 000000475 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.975 V. Piezo Error = -8.2 V.
17-03-17 18:31:01.548 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.3 um, Read 10 ADC samples: Avg = 37192 (-178.4 uncal um), Error = 0.9 uncal um, Median = 37192 (-178.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 37186 (-178.3 uncal um), Max = 37202 (-178.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:31:01.548 -07 000000475 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37192, posNoise = 10, negNoise = 6
17-03-17 18:31:01.548 -07 000000475 INF: Z Motor: After move to -0.179258, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:01.548 -07 000000475 INF: Z Motor: Settle wait time = 4594 ms, measure time = 105 ms (allowed 150 ms), total time = 4699 ms
17-03-17 18:31:01.548 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:31:01.598 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4755 ms
17-03-17 18:31:01.598 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:01.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:01.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:01.598 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 18:31:01.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:31:01.598 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:01.598 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:01.598 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:01.598 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:01.598 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:31:01.598 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:31:01.628 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-17 18:31:01.628 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:01.628 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:01.628 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:01.638 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:31:01.638 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 18:31:01.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:01.688 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:01.888 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:01.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:01.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:01.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) start.
17-03-17 18:31:01.928 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:01.928 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:01.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 18:31:02.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:31:02.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:02.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:31:02.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:31:02.028 -07 000000415 INF: Image SNR check: start
17-03-17 18:31:02.028 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:02.028 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:02.038 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:02.038 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:02.038 -07 000000415 INF: Image SNR check: pass  [peak (Max-Min)=73.46]
17-03-17 18:31:02.038 -07 000000415 INF: Autofocus start
17-03-17 18:31:02.038 -07 000000415 INF: MeasureProfile start
17-03-17 18:31:02.048 -07 000000415 INF: MeasureProfile done
17-03-17 18:31:02.048 -07 000000415 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:31:02.048 -07 000000415 INF: Autofocus finished
17-03-17 18:31:02.238 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:02.238 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:31:02.238 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.179252649987508. ----------
17-03-17 18:31:02.238 -07 000000610 INF: Cycle	14	Tile	1	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:02.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37656, sync = True, waitForSettling = True)
17-03-17 18:31:02.248 -07 000000610 INF: Z Motor: Moving to -0.172378 mm, started at -0.179253 mm, distance = 6.87 um
17-03-17 18:31:02.248 -07 000000610 INF: FPGA: Xmit ZDACW 37656\n [Z Motor]
17-03-17 18:31:02.248 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:31:02.258 -07 000000610 INF: FPGA: 'ZDACW 37656' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:02.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:02.258 -07 000000482 INF: FPGA: Recv ZDACR 37656
17-03-17 18:31:02.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:02.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:02.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:02.418 -07 000000623 INF: FPGA: Recv ZSGSRD 36127
17-03-17 18:31:02.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:02.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:02.428 -07 000000475 INF: FPGA: Recv ZSGSRD 36121
17-03-17 18:31:02.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:02.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:02.438 -07 000000415 INF: FPGA: Recv ZSGSRD 36129
17-03-17 18:31:02.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:02.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:02.448 -07 000000618 INF: FPGA: Recv ZSGSRD 36125
17-03-17 18:31:02.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:02.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:02.458 -07 000000475 INF: FPGA: Recv ZSGSRD 36123
17-03-17 18:31:02.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:02.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:02.468 -07 000000618 INF: FPGA: Recv ZSGSRD 36126
17-03-17 18:31:02.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:02.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:02.478 -07 000000608 INF: FPGA: Recv ZSGSRD 36121
17-03-17 18:31:02.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:02.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:02.488 -07 000000512 INF: FPGA: Recv ZSGSRD 36130
17-03-17 18:31:02.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:02.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:02.498 -07 000000482 INF: FPGA: Recv ZSGSRD 36122
17-03-17 18:31:02.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:02.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:02.508 -07 000000512 INF: FPGA: Recv ZSGSRD 36126
17-03-17 18:31:02.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:02.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:02.518 -07 000000608 INF: FPGA: Recv ZPIEZORD 32086
17-03-17 18:31:02.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:02.528 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.746 V. Piezo Error = -8.9 V.
17-03-17 18:31:02.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36125 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36126 (-171.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36121 (-171.5 uncal um), Max = 36130 (-171.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:31:02.528 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36125, posNoise = 5, negNoise = 4
17-03-17 18:31:02.528 -07 000000610 INF: Z Motor: After move to -0.172378, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:02.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:31:02.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:02.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:02.528 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:02.528 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:02.528 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:02.528 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:02.528 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:02.528 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:02.528 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:31:02.528 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:02.528 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:31:02.528 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:31:02.538 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:02.538 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:02.548 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:31:02.548 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:31:02.558 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 18:31:02.558 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:02.558 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:31:02.558 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:02.568 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:31:02.568 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 41 ms.
17-03-17 18:31:02.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37833 150\n [Camera]
17-03-17 18:31:02.768 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:31:03.148 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.978563,
17-03-17 18:31:03.168 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:31:03.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:31:03.168 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:03.168 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:03.168 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 18:31:03.168 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:31:03.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:31:03.168 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:03.168 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:03.168 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:31:03.358 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37833 778
17-03-17 18:31:03.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:31:03.548 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:31:03.548 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:31:03.548 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:03.548 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:31:03.548 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:31:03.548 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:03.548 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:31:03.548 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:31:03.558 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:31:03.558 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:31:03.698 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:31:03.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:31:03.698 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:03.698 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:03.698 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) start.
17-03-17 18:31:03.698 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:31:03.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:31:03.698 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:03.698 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:03.698 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:31:03.888 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:31:03.888 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:03.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37833 150' command took 2 ms to send, 1305 ms to get response, and 1316 ms overall
17-03-17 18:31:03.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:03.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.17239801563225. ------
17-03-17 18:31:03.898 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:03.898 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17857 mm
17-03-17 18:31:03.898 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:03.898 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:31:03.898 -07 000000475 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 18:31:03.908 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:04.098 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:31:04.098 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:31:04.098 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:04.098 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:31:04.098 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:31:04.098 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:04.098 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:31:04.098 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:31:04.108 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:31:04.108 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:31:04.118 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 39009, sync = True, waitForSettling = False)
17-03-17 18:31:04.118 -07 000000618 INF: Z Motor: Moving to -0.178572 mm, started at -0.172398 mm, distance = -6.17 um
17-03-17 18:31:04.118 -07 000000618 INF: FPGA: Xmit ZDACW 39009\n [Z Motor]
17-03-17 18:31:04.158 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:04.158 -07 000000608 INF: FPGA: Recv YRDPOS 122699
17-03-17 18:31:04.158 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:31:04.158 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 245 ms to get response, and 261 ms overall
17-03-17 18:31:04.158 -07 000000475 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:04.158 -07 000000475 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:04.158 -07 000000475 INF: Y Motor: Moving 1330 steps1
17-03-17 18:31:04.158 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 255 ms to get response, and 265 ms overall
17-03-17 18:31:04.158 -07 000000618 INF: FPGA: 'ZDACW 39009' command took 0 ms to send, 35 ms to get response, and 43 ms overall
17-03-17 18:31:04.158 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:04.168 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:04.168 -07 000000608 INF: FPGA: Recv ZDACR 39009
17-03-17 18:31:04.178 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:31:04.178 -07 000000618 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 18:31:04.178 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:04.378 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:04.378 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 216 ms overall
17-03-17 18:31:04.538 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:31:04.538 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 378 ms overall
17-03-17 18:31:04.568 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:04.568 -07 000000618 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:31:04.578 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:04.578 -07 000000475 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:04.578 -07 000000475 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:31:04.578 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.831 mm, average velocity = 2.198 mm/sec
17-03-17 18:31:05.528 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:05.528 -07 000000512 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:31:05.538 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:05.538 -07 000000475 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:05.558 -07 000000475 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:05.558 -07 000000475 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:31:05.558 -07 000000475 INF: Y Motor: Moved to 60.7339 after 1655 ms (table move)
17-03-17 18:31:05.558 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178572 mm (DAC = 39009)
17-03-17 18:31:05.558 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:05.558 -07 000000475 INF: FPGA: Recv ZSGSRD 37091
17-03-17 18:31:05.568 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:05.568 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:05.568 -07 000000475 INF: FPGA: Recv ZSGSRD 37085
17-03-17 18:31:05.578 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:05.578 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:05.578 -07 000000512 INF: FPGA: Recv ZSGSRD 37091
17-03-17 18:31:05.588 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:05.588 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:05.588 -07 000000512 INF: FPGA: Recv ZSGSRD 37086
17-03-17 18:31:05.598 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:05.598 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:05.598 -07 000000475 INF: FPGA: Recv ZSGSRD 37091
17-03-17 18:31:05.608 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:05.608 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:05.608 -07 000000618 INF: FPGA: Recv ZSGSRD 37084
17-03-17 18:31:05.618 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:05.618 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:05.618 -07 000000618 INF: FPGA: Recv ZSGSRD 37081
17-03-17 18:31:05.628 -07 000000415 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:05.628 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:05.628 -07 000000475 INF: FPGA: Recv ZSGSRD 37089
17-03-17 18:31:05.638 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:05.638 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:05.638 -07 000000618 INF: FPGA: Recv ZSGSRD 37079
17-03-17 18:31:05.648 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:05.648 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:05.648 -07 000000512 INF: FPGA: Recv ZSGSRD 37088
17-03-17 18:31:05.658 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:05.658 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:05.658 -07 000000475 INF: FPGA: Recv ZPIEZORD 33381
17-03-17 18:31:05.668 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:05.668 -07 000000415 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.952 V. Piezo Error = -8.2 V.
17-03-17 18:31:05.668 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37086 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37087 (-177.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37079 (-177.6 uncal um), Max = 37091 (-177.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:31:05.668 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37086, posNoise = 5, negNoise = 7
17-03-17 18:31:05.668 -07 000000415 INF: Z Motor: After move to -0.178572, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:05.668 -07 000000415 INF: Z Motor: Settle wait time = 1441 ms, measure time = 107 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:31:05.668 -07 000000415 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:31:05.718 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1818 ms
17-03-17 18:31:05.718 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:05.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:05.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:05.718 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:05.718 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:05.718 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:05.718 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:05.718 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:31:05.718 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:05.728 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:05.728 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:05.738 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:31:05.738 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:31:05.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:05.788 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:05.988 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:05.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:05.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:05.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1483501952, 0x0, 559484976) start.
17-03-17 18:31:06.018 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:06.028 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:06.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:31:06.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1483501952, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:31:06.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:06.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:31:06.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:31:06.128 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:06.128 -07 000000415 INF: Autofocus start
17-03-17 18:31:06.128 -07 000000415 INF: MeasureProfile start
17-03-17 18:31:06.128 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:06.138 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:06.138 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:06.138 -07 000000415 INF: MeasureProfile done
17-03-17 18:31:06.138 -07 000000415 INF: X=64  Z correction [um]=0.2557664
17-03-17 18:31:06.138 -07 000000415 INF: Autofocus finished
17-03-17 18:31:06.338 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:06.338 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 18:31:06.338 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.178571683500482. ----------
17-03-17 18:31:06.338 -07 000000610 INF: Cycle	14	Tile	2	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:06.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37577, sync = True, waitForSettling = True)
17-03-17 18:31:06.348 -07 000000610 INF: Z Motor: Moving to -0.172016 mm, started at -0.178572 mm, distance = 6.56 um
17-03-17 18:31:06.348 -07 000000610 INF: FPGA: Xmit ZDACW 37577\n [Z Motor]
17-03-17 18:31:06.348 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:31:06.358 -07 000000610 INF: FPGA: 'ZDACW 37577' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:31:06.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:06.358 -07 000000424 INF: FPGA: Recv ZDACR 37577
17-03-17 18:31:06.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:06.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:06.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:06.518 -07 000000618 INF: FPGA: Recv ZSGSRD 36076
17-03-17 18:31:06.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:06.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:06.528 -07 000000475 INF: FPGA: Recv ZSGSRD 36067
17-03-17 18:31:06.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:06.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:06.538 -07 000000608 INF: FPGA: Recv ZSGSRD 36068
17-03-17 18:31:06.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:06.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:06.548 -07 000000424 INF: FPGA: Recv ZSGSRD 36068
17-03-17 18:31:06.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:06.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:06.558 -07 000000593 INF: FPGA: Recv ZSGSRD 36068
17-03-17 18:31:06.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:06.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:06.568 -07 000000512 INF: FPGA: Recv ZSGSRD 36068
17-03-17 18:31:06.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:06.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:06.578 -07 000000608 INF: FPGA: Recv ZSGSRD 36067
17-03-17 18:31:06.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:06.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:06.588 -07 000000424 INF: FPGA: Recv ZSGSRD 36063
17-03-17 18:31:06.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:06.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:06.598 -07 000000593 INF: FPGA: Recv ZSGSRD 36067
17-03-17 18:31:06.598 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:31:06.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:31:06.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:06.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:06.608 -07 000000512 INF: FPGA: Recv ZSGSRD 36071
17-03-17 18:31:06.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:06.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:06.618 -07 000000415 INF: FPGA: Recv ZPIEZORD 32003
17-03-17 18:31:06.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:06.628 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.734 V. Piezo Error = -9.0 V.
17-03-17 18:31:06.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36068 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36068 (-171.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36063 (-171.1 uncal um), Max = 36076 (-171.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:31:06.628 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36068, posNoise = 8, negNoise = 5
17-03-17 18:31:06.628 -07 000000610 INF: Z Motor: After move to -0.172016, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:06.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:31:06.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:06.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:06.628 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:06.628 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:06.628 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:06.628 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:06.628 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:06.628 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:06.628 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:31:06.628 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:06.628 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:31:06.628 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:06.628 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:31:06.628 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:06.638 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:31:06.638 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:06.648 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 18:31:06.648 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:31:06.648 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:31:06.648 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:31:06.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37754 150\n [Camera]
17-03-17 18:31:06.848 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:31:07.238 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:31:07.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:31:07.248 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:07.248 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:07.248 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:31:07.248 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:31:07.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:31:07.248 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:07.248 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:07.248 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:31:07.438 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37754 778
17-03-17 18:31:07.588 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:31:07.618 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:31:07.618 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:31:07.618 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:07.618 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:31:07.618 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:31:07.618 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:07.628 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:07.628 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:31:07.628 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:07.638 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 18:31:07.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:31:07.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:31:07.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:31:07.778 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:07.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:31:07.778 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:07.778 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:31:07.778 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:07.778 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:07.778 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-17 18:31:07.968 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:31:07.968 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:07.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37754 150' command took 2 ms to send, 1313 ms to get response, and 1316 ms overall
17-03-17 18:31:07.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:07.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.172031835540169. ------
17-03-17 18:31:07.968 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:07.968 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17864 mm
17-03-17 18:31:07.968 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:07.978 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:31:07.978 -07 000000429 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 18:31:07.978 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:07.978 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:07.978 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:31:07.978 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 39023, sync = True, waitForSettling = False)
17-03-17 18:31:07.978 -07 000000012 INF: Z Motor: Moving to -0.178636 mm, started at -0.172032 mm, distance = -6.60 um
17-03-17 18:31:07.978 -07 000000512 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:31:07.988 -07 000000012 INF: FPGA: Xmit ZDACW 39023\n [Z Motor]
17-03-17 18:31:07.988 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:07.988 -07 000000429 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:07.988 -07 000000429 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:07.988 -07 000000429 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:31:07.988 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:31:07.998 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:07.998 -07 000000012 INF: FPGA: 'ZDACW 39023' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:31:08.008 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:08.018 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:08.018 -07 000000512 INF: FPGA: Recv ZDACR 39023
17-03-17 18:31:08.028 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:31:08.028 -07 000000012 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:31:08.178 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:31:08.178 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:31:08.178 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:08.178 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:31:08.178 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:31:08.178 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:08.178 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:08.188 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:31:08.188 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:31:08.188 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:31:08.198 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:08.198 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 18:31:08.388 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:31:08.388 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-17 18:31:08.418 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:08.418 -07 000000424 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:31:08.428 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:31:08.428 -07 000000429 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:08.428 -07 000000429 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:31:08.428 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-17 18:31:08.508 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.994908,
17-03-17 18:31:09.378 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:09.378 -07 000000012 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:31:09.388 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:09.388 -07 000000429 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:09.408 -07 000000429 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:09.408 -07 000000429 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:31:09.408 -07 000000429 INF: Y Motor: Moved to 61.5645 after 1429 ms (table move)
17-03-17 18:31:09.408 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178636 mm (DAC = 39023)
17-03-17 18:31:09.408 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:09.408 -07 000000012 INF: FPGA: Recv ZSGSRD 37102
17-03-17 18:31:09.418 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:09.418 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:09.418 -07 000000012 INF: FPGA: Recv ZSGSRD 37104
17-03-17 18:31:09.428 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:09.428 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:09.428 -07 000000475 INF: FPGA: Recv ZSGSRD 37100
17-03-17 18:31:09.438 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:09.438 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:09.438 -07 000000012 INF: FPGA: Recv ZSGSRD 37095
17-03-17 18:31:09.448 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:09.448 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:09.448 -07 000000012 INF: FPGA: Recv ZSGSRD 37093
17-03-17 18:31:09.458 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:09.458 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:09.458 -07 000000429 INF: FPGA: Recv ZSGSRD 37099
17-03-17 18:31:09.468 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:09.468 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:09.468 -07 000000429 INF: FPGA: Recv ZSGSRD 37094
17-03-17 18:31:09.478 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:09.478 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:09.478 -07 000000012 INF: FPGA: Recv ZSGSRD 37095
17-03-17 18:31:09.488 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:09.488 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:09.488 -07 000000012 INF: FPGA: Recv ZSGSRD 37102
17-03-17 18:31:09.498 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:09.498 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:09.498 -07 000000429 INF: FPGA: Recv ZSGSRD 37100
17-03-17 18:31:09.508 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:09.518 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:09.518 -07 000000424 INF: FPGA: Recv ZPIEZORD 33393
17-03-17 18:31:09.528 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:31:09.528 -07 000000593 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.955 V. Piezo Error = -8.2 V.
17-03-17 18:31:09.528 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37098 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37100 (-177.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37093 (-177.7 uncal um), Max = 37104 (-177.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:31:09.528 -07 000000593 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37098, posNoise = 6, negNoise = 5
17-03-17 18:31:09.528 -07 000000593 INF: Z Motor: After move to -0.178636, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:09.528 -07 000000593 INF: Z Motor: Settle wait time = 1431 ms, measure time = 117 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:31:09.528 -07 000000593 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 18:31:09.568 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 18:31:09.568 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:09.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:09.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:09.568 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:09.568 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:09.568 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:09.568 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:09.568 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:09.568 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:09.578 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:31:09.578 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:09.588 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:31:09.588 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:31:09.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:09.628 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:09.828 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:09.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:09.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:09.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1178210064, 0x0, 559484976) start.
17-03-17 18:31:09.868 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:09.868 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:09.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 18:31:09.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1178210064, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:31:09.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:09.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:31:09.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 18:31:10.068 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:10.068 -07 000000429 INF: Autofocus start
17-03-17 18:31:10.068 -07 000000429 INF: MeasureProfile start
17-03-17 18:31:10.068 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:10.078 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:31:10.078 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:10.078 -07 000000429 INF: MeasureProfile done
17-03-17 18:31:10.078 -07 000000429 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:31:10.078 -07 000000429 INF: Autofocus finished
17-03-17 18:31:10.278 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:10.278 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:31:10.278 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.178648774046183. ----------
17-03-17 18:31:10.278 -07 000000610 INF: Cycle	14	Tile	3	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:10.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37503, sync = True, waitForSettling = True)
17-03-17 18:31:10.288 -07 000000610 INF: Z Motor: Moving to -0.171678 mm, started at -0.178649 mm, distance = 6.97 um
17-03-17 18:31:10.288 -07 000000610 INF: FPGA: Xmit ZDACW 37503\n [Z Motor]
17-03-17 18:31:10.288 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:31:10.298 -07 000000610 INF: FPGA: 'ZDACW 37503' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:10.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:10.298 -07 000000012 INF: FPGA: Recv ZDACR 37503
17-03-17 18:31:10.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:10.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:10.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:10.458 -07 000000593 INF: FPGA: Recv ZSGSRD 36016
17-03-17 18:31:10.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:10.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:10.468 -07 000000608 INF: FPGA: Recv ZSGSRD 36015
17-03-17 18:31:10.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:10.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:10.478 -07 000000593 INF: FPGA: Recv ZSGSRD 36013
17-03-17 18:31:10.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:10.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:10.488 -07 000000012 INF: FPGA: Recv ZSGSRD 36012
17-03-17 18:31:10.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:10.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:10.498 -07 000000593 INF: FPGA: Recv ZSGSRD 36009
17-03-17 18:31:10.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:10.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:10.508 -07 000000012 INF: FPGA: Recv ZSGSRD 36016
17-03-17 18:31:10.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:10.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:10.518 -07 000000475 INF: FPGA: Recv ZSGSRD 36018
17-03-17 18:31:10.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:10.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:10.528 -07 000000608 INF: FPGA: Recv ZSGSRD 36018
17-03-17 18:31:10.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:10.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:10.538 -07 000000593 INF: FPGA: Recv ZSGSRD 36010
17-03-17 18:31:10.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:10.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:10.548 -07 000000608 INF: FPGA: Recv ZSGSRD 36010
17-03-17 18:31:10.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:10.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:10.558 -07 000000593 INF: FPGA: Recv ZPIEZORD 31935
17-03-17 18:31:10.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:10.568 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.723 V. Piezo Error = -9.0 V.
17-03-17 18:31:10.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36014 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36014 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36009 (-170.8 uncal um), Max = 36018 (-170.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:31:10.568 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36014, posNoise = 4, negNoise = 5
17-03-17 18:31:10.568 -07 000000610 INF: Z Motor: After move to -0.171678, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:10.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:31:10.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:10.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:10.568 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:10.568 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:10.568 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:10.568 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:10.568 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:10.568 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:10.568 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:31:10.568 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:10.568 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:31:10.568 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:10.578 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:31:10.578 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:10.578 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:31:10.578 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:10.588 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:31:10.588 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:31:10.588 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:31:10.588 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:31:10.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37680 150\n [Camera]
17-03-17 18:31:10.788 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:31:11.188 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:31:11.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:31:11.188 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:11.188 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:11.188 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2637860568, 0x0, 391868352) start.
17-03-17 18:31:11.188 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:31:11.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:31:11.188 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:11.188 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:11.188 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 18:31:11.378 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37680 778
17-03-17 18:31:11.528 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:31:11.568 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 18:31:11.578 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:31:11.578 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:11.708 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:31:11.708 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:31:11.708 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2637860568, 0x0, 391868352) end. Duration was 522 ms.
17-03-17 18:31:11.708 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 18:31:11.708 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:11.718 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 140 ms.
17-03-17 18:31:11.718 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:31:11.718 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-17 18:31:11.718 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:31:11.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:31:11.718 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:11.718 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:31:11.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:31:11.718 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:11.728 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 538 ms.
17-03-17 18:31:11.728 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:11.728 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:31:11.738 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:11.738 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:31:11.908 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:31:11.908 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:11.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37680 150' command took 2 ms to send, 1305 ms to get response, and 1316 ms overall
17-03-17 18:31:11.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:11.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.171684928084514. ------
17-03-17 18:31:11.918 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:11.918 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17781 mm
17-03-17 18:31:11.918 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:11.918 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:11.918 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:31:11.918 -07 000000429 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:31:11.918 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38842, sync = True, waitForSettling = False)
17-03-17 18:31:11.918 -07 000000424 INF: Z Motor: Moving to -0.177807 mm, started at -0.171685 mm, distance = -6.12 um
17-03-17 18:31:11.928 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:11.928 -07 000000424 INF: FPGA: Xmit ZDACW 38842\n [Z Motor]
17-03-17 18:31:11.928 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 18:31:11.938 -07 000000424 INF: FPGA: 'ZDACW 38842' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:31:11.938 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:11.938 -07 000000593 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:31:11.948 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:11.948 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:31:11.948 -07 000000429 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:11.948 -07 000000429 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:11.948 -07 000000429 INF: Y Motor: Moving 1341 steps-17
17-03-17 18:31:11.958 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:11.958 -07 000000512 INF: FPGA: Recv ZDACR 38842
17-03-17 18:31:11.968 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:31:11.968 -07 000000424 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 18:31:11.968 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:12.128 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:31:12.128 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:31:12.128 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:12.128 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:12.128 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:31:12.128 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:31:12.128 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:31:12.128 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:12.138 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:12.138 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 18:31:12.148 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:12.148 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:31:12.338 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:31:12.338 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:31:12.378 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:12.378 -07 000000482 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:31:12.388 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:31:12.388 -07 000000429 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:12.388 -07 000000429 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:31:12.388 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 18:31:13.338 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:13.338 -07 000000608 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:31:13.348 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:13.348 -07 000000429 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:13.358 -07 000000429 INF: Y Motor: After move to 62.402607, error = -0.006123, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:13.358 -07 000000429 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:31:13.358 -07 000000429 INF: Y Motor: Moved to 62.3965 after 1441 ms (table move)
17-03-17 18:31:13.368 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177807 mm (DAC = 38842)
17-03-17 18:31:13.368 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:13.368 -07 000000429 INF: FPGA: Recv ZSGSRD 36965
17-03-17 18:31:13.378 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:13.378 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:13.378 -07 000000424 INF: FPGA: Recv ZSGSRD 36963
17-03-17 18:31:13.388 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:13.388 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:13.388 -07 000000608 INF: FPGA: Recv ZSGSRD 36969
17-03-17 18:31:13.398 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:13.398 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:13.398 -07 000000482 INF: FPGA: Recv ZSGSRD 36979
17-03-17 18:31:13.408 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:13.408 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:13.408 -07 000000482 INF: FPGA: Recv ZSGSRD 36964
17-03-17 18:31:13.418 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:13.418 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:13.418 -07 000000482 INF: FPGA: Recv ZSGSRD 36971
17-03-17 18:31:13.428 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:13.428 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:13.428 -07 000000623 INF: FPGA: Recv ZSGSRD 36967
17-03-17 18:31:13.438 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:13.438 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:13.438 -07 000000623 INF: FPGA: Recv ZSGSRD 36966
17-03-17 18:31:13.448 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:13.448 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:13.448 -07 000000608 INF: FPGA: Recv ZSGSRD 36966
17-03-17 18:31:13.458 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:13.458 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:13.458 -07 000000623 INF: FPGA: Recv ZSGSRD 36960
17-03-17 18:31:13.468 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:13.468 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:13.468 -07 000000623 INF: FPGA: Recv ZPIEZORD 33200
17-03-17 18:31:13.478 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:13.478 -07 000000448 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.3 V.
17-03-17 18:31:13.478 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36967 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36966 (-176.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36960 (-176.9 uncal um), Max = 36979 (-177.0 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:31:13.478 -07 000000448 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36967, posNoise = 12, negNoise = 7
17-03-17 18:31:13.478 -07 000000448 INF: Z Motor: After move to -0.177807, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:13.478 -07 000000448 INF: Z Motor: Settle wait time = 1444 ms, measure time = 108 ms (allowed 150 ms), total time = 1552 ms
17-03-17 18:31:13.478 -07 000000448 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:31:13.528 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:31:13.528 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:13.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:13.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:13.528 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:13.528 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:13.528 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:13.528 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:13.528 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:13.528 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:13.538 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:31:13.538 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:13.548 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:31:13.548 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:31:13.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:13.598 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:13.798 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:13.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:13.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:13.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 18:31:13.838 -07 000000429 INF: FPGA: Recv @CAMSNAP 282
17-03-17 18:31:13.838 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:13.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 294 ms overall
17-03-17 18:31:13.868 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.033041,
17-03-17 18:31:13.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:31:13.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:13.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:31:13.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:31:13.938 -07 000000482 INF: Autofocus start
17-03-17 18:31:13.938 -07 000000482 INF: MeasureProfile start
17-03-17 18:31:13.938 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:13.938 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:13.948 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:31:13.948 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:13.948 -07 000000482 INF: MeasureProfile done
17-03-17 18:31:13.948 -07 000000482 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:31:13.948 -07 000000482 INF: Autofocus finished
17-03-17 18:31:14.148 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:14.148 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:31:14.148 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.396484375, Z-position -0.177807202255612. ----------
17-03-17 18:31:14.148 -07 000000610 INF: Cycle	14	Tile	4	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:14.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37393, sync = True, waitForSettling = True)
17-03-17 18:31:14.158 -07 000000610 INF: Z Motor: Moving to -0.171174 mm, started at -0.177807 mm, distance = 6.63 um
17-03-17 18:31:14.158 -07 000000610 INF: FPGA: Xmit ZDACW 37393\n [Z Motor]
17-03-17 18:31:14.158 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:31:14.168 -07 000000610 INF: FPGA: 'ZDACW 37393' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:31:14.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:14.168 -07 000000623 INF: FPGA: Recv ZDACR 37393
17-03-17 18:31:14.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:14.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:14.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:14.328 -07 000000608 INF: FPGA: Recv ZSGSRD 35934
17-03-17 18:31:14.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:14.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:14.338 -07 000000623 INF: FPGA: Recv ZSGSRD 35937
17-03-17 18:31:14.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:14.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:14.348 -07 000000608 INF: FPGA: Recv ZSGSRD 35936
17-03-17 18:31:14.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:14.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:14.358 -07 000000623 INF: FPGA: Recv ZSGSRD 35937
17-03-17 18:31:14.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:14.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:14.368 -07 000000429 INF: FPGA: Recv ZSGSRD 35934
17-03-17 18:31:14.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:14.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:14.378 -07 000000424 INF: FPGA: Recv ZSGSRD 35931
17-03-17 18:31:14.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:14.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:14.388 -07 000000608 INF: FPGA: Recv ZSGSRD 35938
17-03-17 18:31:14.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:14.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:14.398 -07 000000448 INF: FPGA: Recv ZSGSRD 35936
17-03-17 18:31:14.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:14.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:14.408 -07 000000608 INF: FPGA: Recv ZSGSRD 35937
17-03-17 18:31:14.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:14.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:14.418 -07 000000448 INF: FPGA: Recv ZSGSRD 35932
17-03-17 18:31:14.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:14.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:14.428 -07 000000608 INF: FPGA: Recv ZPIEZORD 31806
17-03-17 18:31:14.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:14.438 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -9.1 V.
17-03-17 18:31:14.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35935 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35936 (-170.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35931 (-170.3 uncal um), Max = 35938 (-170.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:31:14.438 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35935, posNoise = 3, negNoise = 4
17-03-17 18:31:14.438 -07 000000610 INF: Z Motor: After move to -0.171174, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:14.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:31:14.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:14.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:14.438 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:14.438 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:14.438 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:14.438 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:14.438 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:14.438 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:14.438 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:14.438 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:14.438 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:31:14.438 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:14.448 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:14.448 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:14.448 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:31:14.448 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:14.458 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:31:14.458 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:31:14.458 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:31:14.458 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:31:14.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37570 150\n [Camera]
17-03-17 18:31:14.658 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:31:15.058 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:31:15.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:31:15.058 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:15.058 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:31:15.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:31:15.058 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:15.188 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:15.188 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:31:15.188 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:15.188 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:31:15.248 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37570 778
17-03-17 18:31:15.398 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:31:15.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 18:31:15.578 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:31:15.578 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:15.578 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:15.578 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 18:31:15.578 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 18:31:15.578 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:31:15.578 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:15.588 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:15.588 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:31:15.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:31:15.588 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:15.588 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:31:15.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:31:15.588 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:15.598 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 535 ms.
17-03-17 18:31:15.598 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:15.598 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:31:15.598 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:15.598 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:31:15.778 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:31:15.778 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:15.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37570 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:31:15.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:15.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.396484375, Z-Position -0.171177415325315. ------
17-03-17 18:31:15.788 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:15.788 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17780 mm
17-03-17 18:31:15.788 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:15.788 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:15.788 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:31:15.788 -07 000000012 INF: Y Motor: Moving to 63.2326 mm, started at 62.3965 mm, delta = 0.8361 mm
17-03-17 18:31:15.788 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38841, sync = True, waitForSettling = False)
17-03-17 18:31:15.788 -07 000000623 INF: Z Motor: Moving to -0.177803 mm, started at -0.171177 mm, distance = -6.63 um
17-03-17 18:31:15.798 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:15.798 -07 000000623 INF: FPGA: Xmit ZDACW 38841\n [Z Motor]
17-03-17 18:31:15.798 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:31:15.808 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:15.808 -07 000000623 INF: FPGA: 'ZDACW 38841' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:15.808 -07 000000501 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:31:15.818 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:31:15.818 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:15.818 -07 000000012 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:15.818 -07 000000012 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:15.818 -07 000000012 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:31:15.828 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:15.828 -07 000000501 INF: FPGA: Recv ZDACR 38841
17-03-17 18:31:15.838 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:31:15.838 -07 000000623 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:31:15.838 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:15.988 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:31:15.988 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:31:15.988 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:15.988 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:31:15.988 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:31:15.988 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:15.988 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:15.988 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:31:15.998 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:15.998 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:31:16.018 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:16.018 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:31:16.218 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 18:31:16.218 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-17 18:31:16.248 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:16.248 -07 000000415 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:31:16.258 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:31:16.258 -07 000000012 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:16.258 -07 000000012 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:31:16.258 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.836 mm, average velocity = 2.090 mm/sec
17-03-17 18:31:16.598 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:31:16.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:31:17.208 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:17.208 -07 000000512 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:31:17.218 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:17.218 -07 000000012 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:17.238 -07 000000012 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:17.238 -07 000000012 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:31:17.238 -07 000000012 INF: Y Motor: Moved to 63.2251 after 1442 ms (table move)
17-03-17 18:31:17.238 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177803 mm (DAC = 38841)
17-03-17 18:31:17.238 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:17.238 -07 000000424 INF: FPGA: Recv ZSGSRD 36963
17-03-17 18:31:17.248 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:31:17.248 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:17.248 -07 000000618 INF: FPGA: Recv ZSGSRD 36963
17-03-17 18:31:17.258 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:17.258 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:17.258 -07 000000424 INF: FPGA: Recv ZSGSRD 36968
17-03-17 18:31:17.268 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:17.268 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:17.268 -07 000000424 INF: FPGA: Recv ZSGSRD 36969
17-03-17 18:31:17.278 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:17.278 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:17.278 -07 000000618 INF: FPGA: Recv ZSGSRD 36969
17-03-17 18:31:17.288 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:17.288 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:17.288 -07 000000608 INF: FPGA: Recv ZSGSRD 36968
17-03-17 18:31:17.298 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:17.298 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:17.298 -07 000000012 INF: FPGA: Recv ZSGSRD 36963
17-03-17 18:31:17.308 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:17.308 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:17.308 -07 000000424 INF: FPGA: Recv ZSGSRD 36968
17-03-17 18:31:17.318 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:17.318 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:17.318 -07 000000618 INF: FPGA: Recv ZSGSRD 36961
17-03-17 18:31:17.328 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:17.328 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:17.328 -07 000000618 INF: FPGA: Recv ZSGSRD 36966
17-03-17 18:31:17.338 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:17.338 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:17.338 -07 000000012 INF: FPGA: Recv ZPIEZORD 33210
17-03-17 18:31:17.348 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:17.348 -07 000000478 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.3 V.
17-03-17 18:31:17.348 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36966 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36967 (-176.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36961 (-176.9 uncal um), Max = 36969 (-176.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:31:17.348 -07 000000478 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36966, posNoise = 3, negNoise = 5
17-03-17 18:31:17.348 -07 000000478 INF: Z Motor: After move to -0.177803, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:17.348 -07 000000478 INF: Z Motor: Settle wait time = 1445 ms, measure time = 106 ms (allowed 150 ms), total time = 1551 ms
17-03-17 18:31:17.348 -07 000000478 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:31:17.398 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 18:31:17.398 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:17.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:17.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:17.398 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:17.398 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:17.398 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:17.398 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:17.398 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:31:17.398 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:17.408 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:31:17.408 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:17.418 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:31:17.418 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:31:17.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:17.458 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:17.658 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:17.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:17.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:17.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 18:31:17.698 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:17.698 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:17.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:31:17.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:31:17.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:17.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:31:17.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:31:17.798 -07 000000618 INF: Autofocus start
17-03-17 18:31:17.798 -07 000000618 INF: MeasureProfile start
17-03-17 18:31:17.798 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:17.798 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:17.808 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:17.808 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:17.808 -07 000000618 INF: MeasureProfile done
17-03-17 18:31:17.808 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:31:17.808 -07 000000618 INF: Autofocus finished
17-03-17 18:31:18.008 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:18.008 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:31:18.008 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.17780077804347. ----------
17-03-17 18:31:18.008 -07 000000610 INF: Cycle	14	Tile	5	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:18.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37355, sync = True, waitForSettling = True)
17-03-17 18:31:18.018 -07 000000610 INF: Z Motor: Moving to -0.171000 mm, started at -0.177801 mm, distance = 6.80 um
17-03-17 18:31:18.018 -07 000000610 INF: FPGA: Xmit ZDACW 37355\n [Z Motor]
17-03-17 18:31:18.018 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:31:18.028 -07 000000610 INF: FPGA: 'ZDACW 37355' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:18.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:18.028 -07 000000424 INF: FPGA: Recv ZDACR 37355
17-03-17 18:31:18.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:18.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:18.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:18.188 -07 000000012 INF: FPGA: Recv ZSGSRD 35908
17-03-17 18:31:18.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:18.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:18.198 -07 000000608 INF: FPGA: Recv ZSGSRD 35915
17-03-17 18:31:18.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:18.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:18.208 -07 000000424 INF: FPGA: Recv ZSGSRD 35911
17-03-17 18:31:18.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:18.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:18.218 -07 000000608 INF: FPGA: Recv ZSGSRD 35912
17-03-17 18:31:18.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:18.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:18.228 -07 000000012 INF: FPGA: Recv ZSGSRD 35910
17-03-17 18:31:18.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:18.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:18.238 -07 000000618 INF: FPGA: Recv ZSGSRD 35911
17-03-17 18:31:18.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:18.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:18.248 -07 000000424 INF: FPGA: Recv ZSGSRD 35910
17-03-17 18:31:18.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:18.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:18.258 -07 000000608 INF: FPGA: Recv ZSGSRD 35909
17-03-17 18:31:18.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:18.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:18.268 -07 000000478 INF: FPGA: Recv ZSGSRD 35908
17-03-17 18:31:18.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:18.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:18.278 -07 000000012 INF: FPGA: Recv ZSGSRD 35910
17-03-17 18:31:18.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:18.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:18.288 -07 000000618 INF: FPGA: Recv ZPIEZORD 31775
17-03-17 18:31:18.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:18.298 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.1 V.
17-03-17 18:31:18.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35910 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35910 (-170.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35908 (-170.1 uncal um), Max = 35915 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:31:18.298 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35910, posNoise = 5, negNoise = 2
17-03-17 18:31:18.298 -07 000000610 INF: Z Motor: After move to -0.171000, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:18.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:31:18.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:18.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:18.298 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:18.298 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:18.298 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:18.298 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:18.298 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:18.298 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:18.298 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:31:18.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:18.298 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:18.298 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:18.308 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:31:18.308 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:18.308 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:31:18.308 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:18.308 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:31:18.308 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:31:18.318 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:31:18.318 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:31:18.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37532 150\n [Camera]
17-03-17 18:31:18.518 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 18:31:18.918 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-17 18:31:18.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-17 18:31:18.928 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-17 18:31:18.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-17 18:31:18.928 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:18.928 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:18.928 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:18.928 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1403846816, 0x0, 391868352) start.
17-03-17 18:31:18.928 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:18.928 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1439269080, 0x0, 418435064) start.
17-03-17 18:31:19.098 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37532 778
17-03-17 18:31:19.228 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.033041,
17-03-17 18:31:19.248 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:31:19.308 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1439269080, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:31:19.308 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 18:31:19.308 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:19.308 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1403846816, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:31:19.308 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:31:19.308 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:19.308 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:19.318 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:19.318 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:31:19.318 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:31:19.448 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-17 18:31:19.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-17 18:31:19.448 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:19.548 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-17 18:31:19.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-17 18:31:19.548 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:19.548 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:19.548 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1474691344, 0x0, 391868352) start.
17-03-17 18:31:19.558 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:19.558 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:31:19.628 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:31:19.628 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:19.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37532 150' command took 2 ms to send, 1309 ms to get response, and 1317 ms overall
17-03-17 18:31:19.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:19.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.171016810021771. ------
17-03-17 18:31:19.638 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:19.638 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17718 mm
17-03-17 18:31:19.638 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:19.638 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:31:19.638 -07 000000623 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:31:19.638 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:19.638 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38704, sync = True, waitForSettling = False)
17-03-17 18:31:19.638 -07 000000415 INF: Z Motor: Moving to -0.177176 mm, started at -0.171017 mm, distance = -6.16 um
17-03-17 18:31:19.648 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:31:19.648 -07 000000415 INF: FPGA: Xmit ZDACW 38704\n [Z Motor]
17-03-17 18:31:19.648 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:31:19.658 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:19.658 -07 000000415 INF: FPGA: 'ZDACW 38704' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:19.658 -07 000000618 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:31:19.668 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:19.668 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:31:19.668 -07 000000623 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:19.668 -07 000000623 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:19.668 -07 000000623 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:31:19.678 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:19.678 -07 000000429 INF: FPGA: Recv ZDACR 38704
17-03-17 18:31:19.688 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:19.688 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:31:19.688 -07 000000415 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:31:19.868 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:19.868 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:31:19.938 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 18:31:19.938 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:31:19.938 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:19.948 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:19.948 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1474691344, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:31:19.948 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:31:19.948 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:19.948 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:19.948 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 18:31:19.948 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:31:20.058 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 18:31:20.058 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:31:20.098 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:20.098 -07 000000012 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:31:20.108 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:20.108 -07 000000623 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:20.108 -07 000000623 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:31:20.108 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.120 mm/sec
17-03-17 18:31:21.058 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:21.058 -07 000000429 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:31:21.068 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:21.068 -07 000000623 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:21.078 -07 000000623 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:21.078 -07 000000623 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:31:21.078 -07 000000623 INF: Y Motor: Moved to 64.0576 after 1437 ms (table move)
17-03-17 18:31:21.078 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177176 mm (DAC = 38704)
17-03-17 18:31:21.078 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:21.088 -07 000000424 INF: FPGA: Recv ZSGSRD 36873
17-03-17 18:31:21.088 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:31:21.088 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:21.088 -07 000000501 INF: FPGA: Recv ZSGSRD 36872
17-03-17 18:31:21.098 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:21.098 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:21.098 -07 000000501 INF: FPGA: Recv ZSGSRD 36865
17-03-17 18:31:21.108 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:21.108 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:21.108 -07 000000623 INF: FPGA: Recv ZSGSRD 36874
17-03-17 18:31:21.118 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:21.118 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:21.118 -07 000000501 INF: FPGA: Recv ZSGSRD 36869
17-03-17 18:31:21.128 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:21.128 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:21.128 -07 000000482 INF: FPGA: Recv ZSGSRD 36871
17-03-17 18:31:21.138 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:21.138 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:21.138 -07 000000623 INF: FPGA: Recv ZSGSRD 36876
17-03-17 18:31:21.148 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:21.148 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:21.148 -07 000000482 INF: FPGA: Recv ZSGSRD 36872
17-03-17 18:31:21.158 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:21.158 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:21.158 -07 000000501 INF: FPGA: Recv ZSGSRD 36872
17-03-17 18:31:21.168 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:21.168 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:21.168 -07 000000623 INF: FPGA: Recv ZSGSRD 36860
17-03-17 18:31:21.178 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:21.178 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:21.178 -07 000000623 INF: FPGA: Recv ZPIEZORD 33063
17-03-17 18:31:21.188 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:21.188 -07 000000512 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.906 V. Piezo Error = -8.4 V.
17-03-17 18:31:21.188 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36870 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36872 (-176.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36860 (-176.2 uncal um), Max = 36876 (-176.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:31:21.188 -07 000000512 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36870, posNoise = 6, negNoise = 10
17-03-17 18:31:21.188 -07 000000512 INF: Z Motor: After move to -0.177176, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:21.188 -07 000000512 INF: Z Motor: Settle wait time = 1440 ms, measure time = 102 ms (allowed 150 ms), total time = 1542 ms
17-03-17 18:31:21.188 -07 000000512 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:31:21.238 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 18:31:21.238 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:21.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:21.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:21.238 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:21.238 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:21.238 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:21.238 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:21.238 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:21.238 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:21.248 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:31:21.248 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:21.258 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:31:21.258 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:31:21.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:21.308 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:21.498 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:21.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:21.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:21.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 18:31:21.538 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:21.548 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:21.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:31:21.598 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:31:21.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:31:21.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:21.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:31:21.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:31:21.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:31:21.648 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:21.648 -07 000000623 INF: Autofocus start
17-03-17 18:31:21.648 -07 000000623 INF: MeasureProfile start
17-03-17 18:31:21.648 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:21.658 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:21.658 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:21.658 -07 000000623 INF: MeasureProfile done
17-03-17 18:31:21.658 -07 000000623 INF: X=64  Z correction [um]=0.2557664
17-03-17 18:31:21.658 -07 000000623 INF: Autofocus finished
17-03-17 18:31:21.858 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:21.858 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:31:21.858 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.177184053677861. ----------
17-03-17 18:31:21.858 -07 000000610 INF: Cycle	14	Tile	6	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:21.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37273, sync = True, waitForSettling = True)
17-03-17 18:31:21.868 -07 000000610 INF: Z Motor: Moving to -0.170625 mm, started at -0.177184 mm, distance = 6.56 um
17-03-17 18:31:21.868 -07 000000610 INF: FPGA: Xmit ZDACW 37273\n [Z Motor]
17-03-17 18:31:21.868 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:31:21.878 -07 000000610 INF: FPGA: 'ZDACW 37273' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:21.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:21.878 -07 000000424 INF: FPGA: Recv ZDACR 37273
17-03-17 18:31:21.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:21.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:22.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:22.038 -07 000000424 INF: FPGA: Recv ZSGSRD 35855
17-03-17 18:31:22.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:22.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:22.048 -07 000000501 INF: FPGA: Recv ZSGSRD 35851
17-03-17 18:31:22.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:22.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:22.058 -07 000000424 INF: FPGA: Recv ZSGSRD 35854
17-03-17 18:31:22.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:22.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:22.068 -07 000000512 INF: FPGA: Recv ZSGSRD 35847
17-03-17 18:31:22.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:22.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:22.078 -07 000000424 INF: FPGA: Recv ZSGSRD 35850
17-03-17 18:31:22.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:22.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:22.088 -07 000000512 INF: FPGA: Recv ZSGSRD 35850
17-03-17 18:31:22.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:22.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:22.098 -07 000000424 INF: FPGA: Recv ZSGSRD 35853
17-03-17 18:31:22.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:22.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:22.108 -07 000000512 INF: FPGA: Recv ZSGSRD 35852
17-03-17 18:31:22.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:22.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:22.118 -07 000000482 INF: FPGA: Recv ZSGSRD 35847
17-03-17 18:31:22.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:22.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:22.128 -07 000000424 INF: FPGA: Recv ZSGSRD 35853
17-03-17 18:31:22.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:22.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:22.138 -07 000000424 INF: FPGA: Recv ZPIEZORD 31699
17-03-17 18:31:22.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:22.148 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -9.2 V.
17-03-17 18:31:22.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35851 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35852 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35847 (-169.7 uncal um), Max = 35855 (-169.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:31:22.148 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35851, posNoise = 4, negNoise = 4
17-03-17 18:31:22.148 -07 000000610 INF: Z Motor: After move to -0.170625, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:22.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:31:22.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:22.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:22.148 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:22.148 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:22.148 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:22.148 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:22.148 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:22.148 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:22.148 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:22.148 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:22.148 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:31:22.148 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:22.158 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:31:22.158 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:22.158 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:22.158 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:22.168 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:31:22.168 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:31:22.168 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:31:22.168 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:31:22.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37449 150\n [Camera]
17-03-17 18:31:22.368 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:31:22.768 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:31:22.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:31:22.768 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:22.768 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:31:22.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:31:22.768 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:22.778 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:22.778 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:31:22.778 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:22.778 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:31:22.958 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37449 778
17-03-17 18:31:23.108 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:31:23.148 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:31:23.148 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 18:31:23.148 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:23.148 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 18:31:23.148 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 18:31:23.148 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:23.148 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:23.148 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:31:23.158 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:23.158 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:31:23.298 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:31:23.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:31:23.298 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:23.298 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:31:23.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:31:23.298 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:23.418 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:23.418 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:31:23.428 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:23.428 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:31:23.488 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:31:23.488 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:23.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37449 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:31:23.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:23.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.170637781505407. ------
17-03-17 18:31:23.498 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17701 mm
17-03-17 18:31:23.498 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:23.498 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:23.498 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:31:23.498 -07 000000512 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:31:23.498 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:23.498 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38668, sync = True, waitForSettling = False)
17-03-17 18:31:23.498 -07 000000482 INF: Z Motor: Moving to -0.177011 mm, started at -0.170638 mm, distance = -6.37 um
17-03-17 18:31:23.508 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:23.508 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:23.508 -07 000000475 INF: FPGA: Recv YRDPOS 131191
17-03-17 18:31:23.518 -07 000000482 INF: FPGA: Xmit ZDACW 38668\n [Z Motor]
17-03-17 18:31:23.518 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:31:23.518 -07 000000512 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:23.518 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:31:23.518 -07 000000512 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:23.518 -07 000000512 INF: Y Motor: Moving 1335 steps-10
17-03-17 18:31:23.528 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:23.528 -07 000000482 INF: FPGA: 'ZDACW 38668' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:31:23.538 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:23.548 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:23.548 -07 000000475 INF: FPGA: Recv ZDACR 38668
17-03-17 18:31:23.558 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:31:23.558 -07 000000482 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:31:23.728 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:23.728 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:31:23.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:31:23.818 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:31:23.818 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:23.818 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:31:23.818 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:31:23.818 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:23.818 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:31:23.818 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 18:31:23.818 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:23.828 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-17 18:31:23.908 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:31:23.908 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:31:23.938 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:23.948 -07 000000415 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:31:23.948 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:31:23.948 -07 000000512 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:23.948 -07 000000512 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:31:23.948 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.835 mm, average velocity = 2.136 mm/sec
17-03-17 18:31:24.588 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.0344,
17-03-17 18:31:24.898 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:24.898 -07 000000501 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:31:24.908 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:24.908 -07 000000512 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:24.928 -07 000000512 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:24.928 -07 000000512 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:31:24.928 -07 000000512 INF: Y Motor: Moved to 64.8794 after 1424 ms (table move)
17-03-17 18:31:24.928 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177011 mm (DAC = 38668)
17-03-17 18:31:24.928 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:24.928 -07 000000593 INF: FPGA: Recv ZSGSRD 36846
17-03-17 18:31:24.938 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:24.938 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:24.938 -07 000000429 INF: FPGA: Recv ZSGSRD 36852
17-03-17 18:31:24.948 -07 000000623 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:24.948 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:24.948 -07 000000593 INF: FPGA: Recv ZSGSRD 36837
17-03-17 18:31:24.958 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:24.958 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:24.958 -07 000000415 INF: FPGA: Recv ZSGSRD 36846
17-03-17 18:31:24.968 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:24.968 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:24.968 -07 000000415 INF: FPGA: Recv ZSGSRD 36842
17-03-17 18:31:24.978 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:24.978 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:24.978 -07 000000415 INF: FPGA: Recv ZSGSRD 36850
17-03-17 18:31:24.988 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:24.988 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:24.988 -07 000000478 INF: FPGA: Recv ZSGSRD 36850
17-03-17 18:31:24.998 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:24.998 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:24.998 -07 000000512 INF: FPGA: Recv ZSGSRD 36843
17-03-17 18:31:25.008 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:25.008 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:25.008 -07 000000512 INF: FPGA: Recv ZSGSRD 36848
17-03-17 18:31:25.018 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:25.018 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:25.018 -07 000000512 INF: FPGA: Recv ZSGSRD 36840
17-03-17 18:31:25.028 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:25.028 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:25.028 -07 000000478 INF: FPGA: Recv ZPIEZORD 33069
17-03-17 18:31:25.038 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:25.038 -07 000000623 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.900 V. Piezo Error = -8.4 V.
17-03-17 18:31:25.038 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36845 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36846 (-176.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36837 (-176.1 uncal um), Max = 36852 (-176.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:31:25.038 -07 000000623 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36845, posNoise = 7, negNoise = 8
17-03-17 18:31:25.038 -07 000000623 INF: Z Motor: After move to -0.177011, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:25.038 -07 000000623 INF: Z Motor: Settle wait time = 1426 ms, measure time = 108 ms (allowed 150 ms), total time = 1534 ms
17-03-17 18:31:25.038 -07 000000623 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:31:25.088 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 18:31:25.088 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:25.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:25.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:25.088 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:25.088 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:25.088 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:25.088 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:25.088 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:25.088 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:25.098 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:25.098 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:25.108 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:31:25.108 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:31:25.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:25.158 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:25.348 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:25.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:25.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:25.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 18:31:25.388 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:25.408 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:25.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 292 ms to get response, and 297 ms overall
17-03-17 18:31:25.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:31:25.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:25.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:31:25.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 137 ms.
17-03-17 18:31:25.508 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:25.508 -07 000000512 INF: Autofocus start
17-03-17 18:31:25.508 -07 000000512 INF: MeasureProfile start
17-03-17 18:31:25.508 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:25.518 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:25.518 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:25.518 -07 000000512 INF: MeasureProfile done
17-03-17 18:31:25.518 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:31:25.518 -07 000000512 INF: Autofocus finished
17-03-17 18:31:25.718 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:25.718 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:31:25.718 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.177023448374317. ----------
17-03-17 18:31:25.718 -07 000000610 INF: Cycle	14	Tile	7	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:25.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37183, sync = True, waitForSettling = True)
17-03-17 18:31:25.728 -07 000000610 INF: Z Motor: Moving to -0.170213 mm, started at -0.177023 mm, distance = 6.81 um
17-03-17 18:31:25.728 -07 000000610 INF: FPGA: Xmit ZDACW 37183\n [Z Motor]
17-03-17 18:31:25.728 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:31:25.738 -07 000000610 INF: FPGA: 'ZDACW 37183' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:31:25.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:25.738 -07 000000623 INF: FPGA: Recv ZDACR 37183
17-03-17 18:31:25.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:25.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:25.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:25.898 -07 000000478 INF: FPGA: Recv ZSGSRD 35788
17-03-17 18:31:25.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:25.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:25.918 -07 000000623 INF: FPGA: Recv ZSGSRD 35792
17-03-17 18:31:25.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:31:25.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:25.948 -07 000000608 INF: FPGA: Recv ZSGSRD 35789
17-03-17 18:31:25.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:31:25.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:25.978 -07 000000478 INF: FPGA: Recv ZSGSRD 35779
17-03-17 18:31:25.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:31:25.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:25.988 -07 000000623 INF: FPGA: Recv ZSGSRD 35782
17-03-17 18:31:25.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:25.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:25.998 -07 000000608 INF: FPGA: Recv ZSGSRD 35795
17-03-17 18:31:26.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:26.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:26.008 -07 000000608 INF: FPGA: Recv ZSGSRD 35779
17-03-17 18:31:26.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:26.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:26.018 -07 000000512 INF: FPGA: Recv ZSGSRD 35787
17-03-17 18:31:26.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:26.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:26.028 -07 000000608 INF: FPGA: Recv ZSGSRD 35787
17-03-17 18:31:26.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:26.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:26.038 -07 000000478 INF: FPGA: Recv ZSGSRD 35788
17-03-17 18:31:26.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:26.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:26.048 -07 000000608 INF: FPGA: Recv ZPIEZORD 31658
17-03-17 18:31:26.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:26.058 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.674 V. Piezo Error = -9.1 V.
17-03-17 18:31:26.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35787 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35788 (-169.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35779 (-169.3 uncal um), Max = 35795 (-169.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:31:26.058 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35787, posNoise = 8, negNoise = 8
17-03-17 18:31:26.058 -07 000000610 INF: Z Motor: After move to -0.170213, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:26.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-17 18:31:26.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:26.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:26.058 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:26.058 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:26.058 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:26.058 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:26.058 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:26.058 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:26.058 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:26.058 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:26.058 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:31:26.058 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:26.068 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:26.068 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:26.068 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:31:26.068 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:26.078 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:31:26.078 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:31:26.078 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:31:26.078 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:31:26.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37360 150\n [Camera]
17-03-17 18:31:26.278 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:31:26.598 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:31:26.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:31:26.678 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:31:26.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:31:26.678 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:26.678 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:26.678 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 654475248, 0x0, 391868352) start.
17-03-17 18:31:26.678 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:31:26.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:31:26.678 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:26.678 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:26.678 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 18:31:26.868 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37360 778
17-03-17 18:31:27.018 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:31:27.058 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 18:31:27.058 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:31:27.058 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:27.058 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 654475248, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:31:27.058 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:31:27.058 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:27.058 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:27.058 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:27.058 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:31:27.068 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:31:27.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:31:27.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:31:27.208 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:27.208 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:31:27.208 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:27.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:31:27.208 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:31:27.208 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:27.208 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:27.208 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:31:27.398 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:31:27.398 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:27.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37360 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:31:27.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:27.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.170226631928334. ------
17-03-17 18:31:27.408 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:27.408 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17668 mm
17-03-17 18:31:27.408 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:27.408 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:31:27.408 -07 000000424 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 18:31:27.408 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38595, sync = True, waitForSettling = False)
17-03-17 18:31:27.408 -07 000000593 INF: Z Motor: Moving to -0.176677 mm, started at -0.170227 mm, distance = -6.45 um
17-03-17 18:31:27.408 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:27.518 -07 000000593 INF: FPGA: Xmit ZDACW 38595\n [Z Motor]
17-03-17 18:31:27.518 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-17 18:31:27.528 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:27.528 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:31:27.528 -07 000000593 INF: FPGA: 'ZDACW 38595' command took 0 ms to send, 2 ms to get response, and 116 ms overall
17-03-17 18:31:27.538 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:27.538 -07 000000448 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:31:27.548 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:27.548 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 135 ms overall
17-03-17 18:31:27.548 -07 000000424 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:27.548 -07 000000478 INF: FPGA: Recv ZDACR 38595
17-03-17 18:31:27.548 -07 000000424 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:27.548 -07 000000424 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:31:27.558 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 18:31:27.558 -07 000000593 INF: Z Motor: MoveAbsStepped took 144 ms (did NOT wait for settling yet))
17-03-17 18:31:27.558 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:27.608 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:31:27.608 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:31:27.608 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:27.608 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 18:31:27.608 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:31:27.608 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:27.618 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:27.618 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:31:27.618 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 18:31:27.628 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:31:27.728 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:27.728 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:31:27.928 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:31:27.928 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:31:27.968 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:27.968 -07 000000512 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:31:27.978 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:27.978 -07 000000424 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:27.978 -07 000000424 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:31:27.978 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.843 mm, average velocity = 2.196 mm/sec
17-03-17 18:31:28.928 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:28.928 -07 000000593 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:31:28.938 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:28.938 -07 000000424 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:28.958 -07 000000424 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:28.958 -07 000000424 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:31:28.958 -07 000000424 INF: Y Motor: Moved to 65.7148 after 1545 ms (table move)
17-03-17 18:31:28.958 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176677 mm (DAC = 38595)
17-03-17 18:31:28.958 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:29.968 -07 000000608 INF: FPGA: Recv ZSGSRD 36794
17-03-17 18:31:29.968 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1000 ms to get response, and 1005 ms overall
17-03-17 18:31:29.968 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:29.968 -07 000000448 INF: FPGA: Recv ZSGSRD 36800
17-03-17 18:31:29.978 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:29.978 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:29.978 -07 000000475 INF: FPGA: Recv ZSGSRD 36788
17-03-17 18:31:29.988 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:29.988 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:29.988 -07 000000512 INF: FPGA: Recv ZSGSRD 36794
17-03-17 18:31:29.998 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:29.998 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:29.998 -07 000000478 INF: FPGA: Recv ZSGSRD 36792
17-03-17 18:31:30.008 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.008 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.008 -07 000000512 INF: FPGA: Recv ZSGSRD 36788
17-03-17 18:31:30.018 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.018 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.018 -07 000000478 INF: FPGA: Recv ZSGSRD 36787
17-03-17 18:31:30.028 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.028 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.028 -07 000000512 INF: FPGA: Recv ZSGSRD 36795
17-03-17 18:31:30.038 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.038 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.038 -07 000000593 INF: FPGA: Recv ZSGSRD 36795
17-03-17 18:31:30.048 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.048 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.048 -07 000000482 INF: FPGA: Recv ZSGSRD 36789
17-03-17 18:31:30.058 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.058 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:30.058 -07 000000608 INF: FPGA: Recv ZPIEZORD 32999
17-03-17 18:31:30.068 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.068 -07 000000618 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.889 V. Piezo Error = -8.4 V.
17-03-17 18:31:30.068 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36792 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36793 (-175.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36787 (-175.8 uncal um), Max = 36800 (-175.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:31:30.068 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36792, posNoise = 8, negNoise = 5
17-03-17 18:31:30.068 -07 000000618 INF: Z Motor: After move to -0.176677, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:30.068 -07 000000618 INF: Z Motor: Settle wait time = 1549 ms, measure time = 1106 ms (allowed 150 ms), total time = 2655 ms
17-03-17 18:31:30.068 -07 000000618 INF: Z Motor: Warning: Actual position measuring time = 1106 ms, longer than max expected time of 150 ms
17-03-17 18:31:30.068 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2658 ms
17-03-17 18:31:30.068 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:30.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:30.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:30.068 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:30.068 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:30.068 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:30.068 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:30.068 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:30.068 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:30.078 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:31:30.078 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:30.088 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:31:30.088 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:31:30.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:30.128 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:30.278 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.020806,
17-03-17 18:31:30.328 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:30.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:30.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:30.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:31:30.368 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:30.368 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:30.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:31:30.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:31:30.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:30.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:31:30.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:31:30.468 -07 000000448 INF: Autofocus start
17-03-17 18:31:30.468 -07 000000448 INF: MeasureProfile start
17-03-17 18:31:30.468 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:30.468 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:30.478 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:30.478 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:30.478 -07 000000448 INF: MeasureProfile done
17-03-17 18:31:30.478 -07 000000448 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:31:30.478 -07 000000448 INF: Autofocus finished
17-03-17 18:31:30.678 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:30.678 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:31:30.678 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.176682965130804. ----------
17-03-17 18:31:30.678 -07 000000610 INF: Cycle	14	Tile	8	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:30.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37128, sync = True, waitForSettling = True)
17-03-17 18:31:30.688 -07 000000610 INF: Z Motor: Moving to -0.169961 mm, started at -0.176683 mm, distance = 6.72 um
17-03-17 18:31:30.688 -07 000000610 INF: FPGA: Xmit ZDACW 37128\n [Z Motor]
17-03-17 18:31:30.688 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:31:30.698 -07 000000610 INF: FPGA: 'ZDACW 37128' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:30.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:30.698 -07 000000512 INF: FPGA: Recv ZDACR 37128
17-03-17 18:31:30.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:30.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.858 -07 000000608 INF: FPGA: Recv ZSGSRD 35744
17-03-17 18:31:30.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:30.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.868 -07 000000478 INF: FPGA: Recv ZSGSRD 35747
17-03-17 18:31:30.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.878 -07 000000475 INF: FPGA: Recv ZSGSRD 35750
17-03-17 18:31:30.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.888 -07 000000593 INF: FPGA: Recv ZSGSRD 35746
17-03-17 18:31:30.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.898 -07 000000623 INF: FPGA: Recv ZSGSRD 35751
17-03-17 18:31:30.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.908 -07 000000593 INF: FPGA: Recv ZSGSRD 35749
17-03-17 18:31:30.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.918 -07 000000475 INF: FPGA: Recv ZSGSRD 35748
17-03-17 18:31:30.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.928 -07 000000512 INF: FPGA: Recv ZSGSRD 35750
17-03-17 18:31:30.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.938 -07 000000448 INF: FPGA: Recv ZSGSRD 35746
17-03-17 18:31:30.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:30.948 -07 000000593 INF: FPGA: Recv ZSGSRD 35743
17-03-17 18:31:30.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:30.958 -07 000000475 INF: FPGA: Recv ZPIEZORD 31618
17-03-17 18:31:30.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:30.968 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.665 V. Piezo Error = -9.1 V.
17-03-17 18:31:30.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35747 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35748 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35743 (-169.1 uncal um), Max = 35751 (-169.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:31:30.968 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35747, posNoise = 4, negNoise = 4
17-03-17 18:31:30.968 -07 000000610 INF: Z Motor: After move to -0.169961, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:30.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:31:30.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:30.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:30.968 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:30.968 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:30.968 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:30.968 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:30.968 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:30.968 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:30.968 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:30.968 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:30.968 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:31:30.968 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:30.978 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:30.978 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:30.978 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:31:30.978 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:30.988 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:31:30.988 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:31:30.988 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:31:30.988 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:31:30.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37304 150\n [Camera]
17-03-17 18:31:31.188 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:31:31.578 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:31:31.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:31:31.578 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:31.578 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:31:31.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:31:31.588 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:31.588 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:31.588 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:31:31.588 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:31.588 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:31:31.598 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:31:31.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:31:31.768 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37304 778
17-03-17 18:31:31.918 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:31:31.978 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 18:31:31.978 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 18:31:31.978 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:31.978 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:31:31.978 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:31:31.978 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:31.988 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:31:31.988 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:31:31.988 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:31:31.998 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:31:32.108 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:31:32.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:31:32.108 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:32.108 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:32.108 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:31:32.118 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:31:32.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:31:32.118 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:32.118 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:32.118 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 18:31:32.298 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:31:32.308 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:32.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37304 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-17 18:31:32.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:32.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.169969663442664. ------
17-03-17 18:31:32.308 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:32.308 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17646 mm
17-03-17 18:31:32.308 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:32.308 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:31:32.308 -07 000000482 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 18:31:32.308 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38547, sync = True, waitForSettling = False)
17-03-17 18:31:32.308 -07 000000475 INF: Z Motor: Moving to -0.176457 mm, started at -0.169970 mm, distance = -6.49 um
17-03-17 18:31:32.318 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:32.318 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:32.318 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:31:32.318 -07 000000501 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:31:32.328 -07 000000475 INF: FPGA: Xmit ZDACW 38547\n [Z Motor]
17-03-17 18:31:32.328 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:32.328 -07 000000482 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:32.328 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:31:32.328 -07 000000482 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:32.328 -07 000000482 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:31:32.338 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:32.338 -07 000000475 INF: FPGA: 'ZDACW 38547' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:31:32.348 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:32.358 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:32.358 -07 000000501 INF: FPGA: Recv ZDACR 38547
17-03-17 18:31:32.368 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:31:32.368 -07 000000475 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:31:32.508 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:31:32.508 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:31:32.508 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:32.508 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:31:32.508 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:31:32.508 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:32.508 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:32.518 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:31:32.518 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:31:32.518 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:31:32.538 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:32.538 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 18:31:32.718 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:31:32.718 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 394 ms overall
17-03-17 18:31:32.758 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:32.768 -07 000000608 INF: FPGA: Recv YRDPOS 136273
17-03-17 18:31:32.768 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:31:32.768 -07 000000482 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:32.768 -07 000000482 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:31:32.768 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.126 mm/sec
17-03-17 18:31:33.718 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:33.718 -07 000000415 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:31:33.728 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:33.728 -07 000000482 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:33.748 -07 000000482 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:33.748 -07 000000482 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:31:33.748 -07 000000482 INF: Y Motor: Moved to 66.5400 after 1432 ms (table move)
17-03-17 18:31:33.748 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176457 mm (DAC = 38547)
17-03-17 18:31:33.748 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:33.748 -07 000000501 INF: FPGA: Recv ZSGSRD 36756
17-03-17 18:31:33.758 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:31:33.758 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:33.758 -07 000000501 INF: FPGA: Recv ZSGSRD 36758
17-03-17 18:31:33.768 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:33.768 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:33.768 -07 000000478 INF: FPGA: Recv ZSGSRD 36756
17-03-17 18:31:33.778 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:33.778 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:33.778 -07 000000501 INF: FPGA: Recv ZSGSRD 36754
17-03-17 18:31:33.788 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:33.788 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:33.788 -07 000000501 INF: FPGA: Recv ZSGSRD 36763
17-03-17 18:31:33.798 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:33.798 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:33.798 -07 000000475 INF: FPGA: Recv ZSGSRD 36762
17-03-17 18:31:33.808 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:33.808 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:33.808 -07 000000593 INF: FPGA: Recv ZSGSRD 36753
17-03-17 18:31:33.818 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:33.818 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:33.818 -07 000000475 INF: FPGA: Recv ZSGSRD 36752
17-03-17 18:31:33.828 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:33.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:33.828 -07 000000593 INF: FPGA: Recv ZSGSRD 36751
17-03-17 18:31:33.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:33.838 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:33.838 -07 000000501 INF: FPGA: Recv ZSGSRD 36756
17-03-17 18:31:33.848 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:33.848 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:33.848 -07 000000593 INF: FPGA: Recv ZPIEZORD 32946
17-03-17 18:31:33.858 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:33.858 -07 000000623 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.882 V. Piezo Error = -8.4 V.
17-03-17 18:31:33.858 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36756 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36756 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36751 (-175.5 uncal um), Max = 36763 (-175.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:31:33.858 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36756, posNoise = 7, negNoise = 5
17-03-17 18:31:33.858 -07 000000623 INF: Z Motor: After move to -0.176457, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:33.858 -07 000000623 INF: Z Motor: Settle wait time = 1435 ms, measure time = 105 ms (allowed 150 ms), total time = 1540 ms
17-03-17 18:31:33.858 -07 000000623 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:31:33.908 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 18:31:33.908 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:33.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:33.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:33.908 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:33.908 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:33.908 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:33.908 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:33.908 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:33.908 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:33.918 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:31:33.918 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:33.928 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:31:33.928 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:31:33.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:33.978 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:34.178 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:34.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:34.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:34.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) start.
17-03-17 18:31:34.218 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:34.218 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:34.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:31:34.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:31:34.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:34.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:31:34.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:31:34.318 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:34.318 -07 000000593 INF: Autofocus start
17-03-17 18:31:34.318 -07 000000593 INF: MeasureProfile start
17-03-17 18:31:34.318 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:34.328 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:34.328 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:34.328 -07 000000593 INF: MeasureProfile done
17-03-17 18:31:34.328 -07 000000593 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:31:34.328 -07 000000593 INF: Autofocus finished
17-03-17 18:31:34.528 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:34.528 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:31:34.528 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.176451693493701. ----------
17-03-17 18:31:34.528 -07 000000610 INF: Cycle	14	Tile	9	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:34.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37027, sync = True, waitForSettling = True)
17-03-17 18:31:34.538 -07 000000610 INF: Z Motor: Moving to -0.169499 mm, started at -0.176452 mm, distance = 6.95 um
17-03-17 18:31:34.538 -07 000000610 INF: FPGA: Xmit ZDACW 37027\n [Z Motor]
17-03-17 18:31:34.538 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:31:34.548 -07 000000610 INF: FPGA: 'ZDACW 37027' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:34.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:34.548 -07 000000593 INF: FPGA: Recv ZDACR 37027
17-03-17 18:31:34.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:34.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:34.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:34.708 -07 000000475 INF: FPGA: Recv ZSGSRD 35680
17-03-17 18:31:34.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:34.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:34.718 -07 000000501 INF: FPGA: Recv ZSGSRD 35676
17-03-17 18:31:34.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:34.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:34.728 -07 000000593 INF: FPGA: Recv ZSGSRD 35673
17-03-17 18:31:34.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:34.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:34.738 -07 000000448 INF: FPGA: Recv ZSGSRD 35674
17-03-17 18:31:34.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:34.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:34.748 -07 000000608 INF: FPGA: Recv ZSGSRD 35674
17-03-17 18:31:34.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:34.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:34.758 -07 000000608 INF: FPGA: Recv ZSGSRD 35675
17-03-17 18:31:34.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:34.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:34.768 -07 000000608 INF: FPGA: Recv ZSGSRD 35673
17-03-17 18:31:34.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:34.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:34.778 -07 000000501 INF: FPGA: Recv ZSGSRD 35670
17-03-17 18:31:34.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:34.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:34.788 -07 000000475 INF: FPGA: Recv ZSGSRD 35678
17-03-17 18:31:34.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:34.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:34.798 -07 000000608 INF: FPGA: Recv ZSGSRD 35678
17-03-17 18:31:34.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:34.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:34.808 -07 000000475 INF: FPGA: Recv ZPIEZORD 31505
17-03-17 18:31:34.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:34.818 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -9.2 V.
17-03-17 18:31:34.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35675 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35674 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35670 (-168.6 uncal um), Max = 35680 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:31:34.818 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35675, posNoise = 5, negNoise = 5
17-03-17 18:31:34.818 -07 000000610 INF: Z Motor: After move to -0.169499, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:34.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:31:34.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:34.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:34.818 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:34.818 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:34.818 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:34.818 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:34.818 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:34.818 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:34.818 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:34.818 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:34.818 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:31:34.818 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:34.828 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:31:34.828 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:34.828 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:31:34.828 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:34.838 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:31:34.838 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:31:34.838 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:31:34.838 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:31:34.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37203 150\n [Camera]
17-03-17 18:31:35.038 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:31:35.438 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:31:35.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:31:35.438 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:35.438 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:35.438 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1053691952, 0x0, 391868352) start.
17-03-17 18:31:35.438 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:31:35.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:31:35.438 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:35.438 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:35.438 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1089114216, 0x0, 418435064) start.
17-03-17 18:31:35.628 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37203 779
17-03-17 18:31:35.638 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.988112,
17-03-17 18:31:35.778 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:31:35.838 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1053691952, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:31:35.838 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:31:35.838 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:35.838 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1089114216, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:31:35.838 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:31:35.838 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:35.838 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:35.838 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:31:35.838 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:35.848 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:31:35.968 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:31:35.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:31:35.968 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:35.968 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:35.968 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1124536480, 0x0, 391868352) start.
17-03-17 18:31:35.968 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:31:35.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:31:35.968 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:35.968 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:35.968 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:31:36.158 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:31:36.158 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:36.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37203 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:31:36.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:36.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.169507120168457. ------
17-03-17 18:31:36.278 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:36.278 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17620 mm
17-03-17 18:31:36.278 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:36.278 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:36.278 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38491, sync = True, waitForSettling = False)
17-03-17 18:31:36.278 -07 000000475 INF: Z Motor: Moving to -0.176201 mm, started at -0.169507 mm, distance = -6.69 um
17-03-17 18:31:36.278 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:31:36.278 -07 000000618 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:31:36.288 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:31:36.288 -07 000000475 INF: FPGA: Xmit ZDACW 38491\n [Z Motor]
17-03-17 18:31:36.288 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:31:36.298 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:36.298 -07 000000475 INF: FPGA: 'ZDACW 38491' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:31:36.298 -07 000000415 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:31:36.308 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:36.308 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:31:36.308 -07 000000618 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:36.308 -07 000000618 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:36.308 -07 000000618 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:31:36.318 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:36.318 -07 000000415 INF: FPGA: Recv ZDACR 38491
17-03-17 18:31:36.328 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:31:36.328 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:36.328 -07 000000475 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 18:31:36.368 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1124536480, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:31:36.368 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:31:36.368 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:36.368 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:31:36.368 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:31:36.368 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:36.378 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:36.378 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:31:36.378 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:31:36.378 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:31:36.508 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:36.508 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:31:36.598 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:31:36.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:31:36.698 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:31:36.698 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 18:31:36.738 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:36.738 -07 000000478 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:31:36.748 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:36.748 -07 000000618 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:36.748 -07 000000618 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:31:36.748 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 18:31:37.698 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:37.698 -07 000000608 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:31:37.708 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:37.708 -07 000000618 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:37.728 -07 000000618 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:37.728 -07 000000618 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:31:37.728 -07 000000618 INF: Y Motor: Moved to 67.3726 after 1442 ms (table move)
17-03-17 18:31:37.728 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176201 mm (DAC = 38491)
17-03-17 18:31:37.728 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:37.728 -07 000000618 INF: FPGA: Recv ZSGSRD 36720
17-03-17 18:31:37.738 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:37.738 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:37.738 -07 000000478 INF: FPGA: Recv ZSGSRD 36715
17-03-17 18:31:37.748 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:37.748 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:37.748 -07 000000429 INF: FPGA: Recv ZSGSRD 36711
17-03-17 18:31:37.758 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:37.758 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:37.758 -07 000000429 INF: FPGA: Recv ZSGSRD 36720
17-03-17 18:31:37.768 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:37.768 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:37.768 -07 000000429 INF: FPGA: Recv ZSGSRD 36716
17-03-17 18:31:37.778 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:37.778 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:37.778 -07 000000478 INF: FPGA: Recv ZSGSRD 36721
17-03-17 18:31:37.788 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:37.908 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:37.908 -07 000000478 INF: FPGA: Recv ZSGSRD 36718
17-03-17 18:31:37.918 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:37.918 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:37.918 -07 000000482 INF: FPGA: Recv ZSGSRD 36722
17-03-17 18:31:37.928 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:37.928 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:37.928 -07 000000608 INF: FPGA: Recv ZSGSRD 36718
17-03-17 18:31:37.938 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:37.938 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:37.938 -07 000000608 INF: FPGA: Recv ZSGSRD 36715
17-03-17 18:31:37.948 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:37.948 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:37.948 -07 000000482 INF: FPGA: Recv ZPIEZORD 32912
17-03-17 18:31:37.958 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:37.958 -07 000000448 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.873 V. Piezo Error = -8.4 V.
17-03-17 18:31:37.958 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36718 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36718 (-175.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36711 (-175.3 uncal um), Max = 36722 (-175.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:31:37.958 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36718, posNoise = 4, negNoise = 7
17-03-17 18:31:37.958 -07 000000448 INF: Z Motor: After move to -0.176201, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:37.958 -07 000000448 INF: Z Motor: Settle wait time = 1446 ms, measure time = 226 ms (allowed 150 ms), total time = 1672 ms
17-03-17 18:31:37.958 -07 000000448 INF: Z Motor: Warning: Actual position measuring time = 226 ms, longer than max expected time of 150 ms
17-03-17 18:31:37.958 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1676 ms
17-03-17 18:31:37.958 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:37.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:37.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:37.958 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:37.958 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:37.958 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:37.958 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:37.958 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:31:37.958 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:37.968 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:37.968 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:37.978 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:31:37.978 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:31:37.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:38.028 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:38.228 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:38.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:38.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:38.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:31:38.268 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:38.268 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:38.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:31:38.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:31:38.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:38.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:31:38.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:31:38.368 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:38.368 -07 000000608 INF: Autofocus start
17-03-17 18:31:38.368 -07 000000608 INF: MeasureProfile start
17-03-17 18:31:38.368 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:38.378 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:38.378 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:38.378 -07 000000608 INF: MeasureProfile done
17-03-17 18:31:38.378 -07 000000608 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:31:38.378 -07 000000608 INF: Autofocus finished
17-03-17 18:31:38.578 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:38.578 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:31:38.578 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.176207573432314. ----------
17-03-17 18:31:38.578 -07 000000610 INF: Cycle	14	Tile	10	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:38.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37041, sync = True, waitForSettling = True)
17-03-17 18:31:38.588 -07 000000610 INF: Z Motor: Moving to -0.169563 mm, started at -0.176208 mm, distance = 6.64 um
17-03-17 18:31:38.588 -07 000000610 INF: FPGA: Xmit ZDACW 37041\n [Z Motor]
17-03-17 18:31:38.588 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:31:38.598 -07 000000610 INF: FPGA: 'ZDACW 37041' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:38.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:38.598 -07 000000448 INF: FPGA: Recv ZDACR 37041
17-03-17 18:31:38.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:38.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:38.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:38.758 -07 000000608 INF: FPGA: Recv ZSGSRD 35682
17-03-17 18:31:38.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:38.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:38.768 -07 000000608 INF: FPGA: Recv ZSGSRD 35688
17-03-17 18:31:38.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:38.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:38.778 -07 000000608 INF: FPGA: Recv ZSGSRD 35684
17-03-17 18:31:38.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:38.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:38.788 -07 000000448 INF: FPGA: Recv ZSGSRD 35684
17-03-17 18:31:38.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:38.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:38.798 -07 000000608 INF: FPGA: Recv ZSGSRD 35687
17-03-17 18:31:38.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:38.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:38.808 -07 000000608 INF: FPGA: Recv ZSGSRD 35689
17-03-17 18:31:38.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:38.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:38.818 -07 000000608 INF: FPGA: Recv ZSGSRD 35688
17-03-17 18:31:38.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:38.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:38.828 -07 000000608 INF: FPGA: Recv ZSGSRD 35680
17-03-17 18:31:38.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:38.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:38.838 -07 000000593 INF: FPGA: Recv ZSGSRD 35688
17-03-17 18:31:38.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:38.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:38.848 -07 000000608 INF: FPGA: Recv ZSGSRD 35686
17-03-17 18:31:38.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:38.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:38.858 -07 000000608 INF: FPGA: Recv ZPIEZORD 31535
17-03-17 18:31:38.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:38.868 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -9.2 V.
17-03-17 18:31:38.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35686 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35686 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35680 (-168.7 uncal um), Max = 35689 (-168.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:31:38.868 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35686, posNoise = 3, negNoise = 6
17-03-17 18:31:38.868 -07 000000610 INF: Z Motor: After move to -0.169563, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:38.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:31:38.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:38.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:38.868 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:38.868 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:38.868 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:38.868 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:38.868 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:38.868 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:38.868 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:31:38.868 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:38.868 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:31:38.868 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:38.878 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:31:38.878 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:38.878 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:31:38.878 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:38.888 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:31:38.888 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:31:38.888 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:31:38.888 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:31:38.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37218 150\n [Camera]
17-03-17 18:31:39.088 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:31:39.488 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:31:39.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:31:39.488 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:39.488 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:31:39.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:31:39.488 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:39.488 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:39.488 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:31:39.498 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:39.498 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:31:39.678 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37218 778
17-03-17 18:31:39.828 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:31:39.878 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:31:39.878 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:31:39.878 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:39.878 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:39.888 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:31:39.888 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:31:39.888 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:39.888 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:39.888 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:31:39.888 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:31:40.018 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:31:40.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:31:40.018 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:40.018 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:31:40.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:31:40.028 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:40.028 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:40.028 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:31:40.028 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:40.038 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) start.
17-03-17 18:31:40.208 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:31:40.208 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:40.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37218 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:31:40.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:40.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.169577786502016. ------
17-03-17 18:31:40.218 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:40.218 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17600 mm
17-03-17 18:31:40.218 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:40.218 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:31:40.218 -07 000000424 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 18:31:40.218 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38448, sync = True, waitForSettling = False)
17-03-17 18:31:40.218 -07 000000448 INF: Z Motor: Moving to -0.176004 mm, started at -0.169578 mm, distance = -6.43 um
17-03-17 18:31:40.218 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:40.228 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:40.228 -07 000000448 INF: FPGA: Xmit ZDACW 38448\n [Z Motor]
17-03-17 18:31:40.228 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:31:40.238 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:40.238 -07 000000448 INF: FPGA: 'ZDACW 38448' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:31:40.348 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:40.348 -07 000000475 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:31:40.348 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 131 ms overall
17-03-17 18:31:40.348 -07 000000424 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:40.358 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:40.358 -07 000000424 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:40.358 -07 000000424 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:31:40.358 -07 000000475 INF: FPGA: Recv ZDACR 38448
17-03-17 18:31:40.368 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 129 ms overall
17-03-17 18:31:40.368 -07 000000448 INF: Z Motor: MoveAbsStepped took 144 ms (did NOT wait for settling yet))
17-03-17 18:31:40.368 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:40.428 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:31:40.428 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:31:40.428 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:40.428 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:40.428 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:31:40.428 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:31:40.428 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:40.428 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:40.428 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:31:40.438 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:31:40.548 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:40.548 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 328 ms overall
17-03-17 18:31:40.738 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:31:40.738 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:31:40.778 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:40.778 -07 000000608 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:31:40.788 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:31:40.788 -07 000000424 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:40.788 -07 000000424 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:31:40.788 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.165 mm/sec
17-03-17 18:31:40.998 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.975845,
17-03-17 18:31:41.738 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:41.748 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:31:41.748 -07 000000475 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:31:41.748 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:41.748 -07 000000424 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:41.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:31:41.758 -07 000000424 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:41.758 -07 000000424 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:31:41.758 -07 000000424 INF: Y Motor: Moved to 68.2056 after 1544 ms (table move)
17-03-17 18:31:41.768 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176004 mm (DAC = 38448)
17-03-17 18:31:41.768 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:41.768 -07 000000608 INF: FPGA: Recv ZSGSRD 36690
17-03-17 18:31:41.778 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:31:41.778 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:41.778 -07 000000618 INF: FPGA: Recv ZSGSRD 36683
17-03-17 18:31:41.788 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:41.788 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:41.788 -07 000000424 INF: FPGA: Recv ZSGSRD 36689
17-03-17 18:31:41.798 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:41.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:41.798 -07 000000415 INF: FPGA: Recv ZSGSRD 36692
17-03-17 18:31:41.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:41.808 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:41.808 -07 000000424 INF: FPGA: Recv ZSGSRD 36690
17-03-17 18:31:41.818 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:41.818 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:41.818 -07 000000475 INF: FPGA: Recv ZSGSRD 36687
17-03-17 18:31:41.828 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:41.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:41.828 -07 000000424 INF: FPGA: Recv ZSGSRD 36687
17-03-17 18:31:41.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:41.838 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:41.838 -07 000000618 INF: FPGA: Recv ZSGSRD 36683
17-03-17 18:31:41.848 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:41.848 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:41.848 -07 000000424 INF: FPGA: Recv ZSGSRD 36680
17-03-17 18:31:41.858 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:41.858 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:41.858 -07 000000475 INF: FPGA: Recv ZSGSRD 36682
17-03-17 18:31:41.868 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:41.868 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:41.868 -07 000000424 INF: FPGA: Recv ZPIEZORD 32838
17-03-17 18:31:41.878 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:41.878 -07 000000501 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.867 V. Piezo Error = -8.5 V.
17-03-17 18:31:41.878 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36686 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36687 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36680 (-175.1 uncal um), Max = 36692 (-175.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:31:41.878 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36686, posNoise = 6, negNoise = 6
17-03-17 18:31:41.878 -07 000000501 INF: Z Motor: After move to -0.176004, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:41.878 -07 000000501 INF: Z Motor: Settle wait time = 1548 ms, measure time = 106 ms (allowed 150 ms), total time = 1654 ms
17-03-17 18:31:41.878 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:31:41.928 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1707 ms
17-03-17 18:31:41.928 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:41.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:41.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:41.928 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:41.928 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:41.928 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:41.928 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:41.938 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:41.938 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:41.938 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:31:41.938 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:41.948 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:31:41.948 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:31:41.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:41.998 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:42.198 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:42.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:42.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:42.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:31:42.238 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:42.238 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:42.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 18:31:42.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:31:42.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:42.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:31:42.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:31:42.338 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:42.338 -07 000000415 INF: Autofocus start
17-03-17 18:31:42.338 -07 000000415 INF: MeasureProfile start
17-03-17 18:31:42.338 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:42.348 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:31:42.348 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:42.348 -07 000000415 INF: MeasureProfile done
17-03-17 18:31:42.348 -07 000000415 INF: X=-96  Z correction [um]=-0.5732754
17-03-17 18:31:42.348 -07 000000415 INF: Autofocus finished
17-03-17 18:31:42.548 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:42.548 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 18:31:42.558 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.176001998643777. ----------
17-03-17 18:31:42.558 -07 000000610 INF: Cycle	14	Tile	11	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:42.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36835, sync = True, waitForSettling = True)
17-03-17 18:31:42.558 -07 000000610 INF: Z Motor: Moving to -0.168620 mm, started at -0.176002 mm, distance = 7.38 um
17-03-17 18:31:42.558 -07 000000610 INF: FPGA: Xmit ZDACW 36835\n [Z Motor]
17-03-17 18:31:42.558 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:31:42.568 -07 000000610 INF: FPGA: 'ZDACW 36835' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:42.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:42.568 -07 000000623 INF: FPGA: Recv ZDACR 36835
17-03-17 18:31:42.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:42.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:42.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:42.728 -07 000000618 INF: FPGA: Recv ZSGSRD 35546
17-03-17 18:31:42.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:42.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:42.738 -07 000000608 INF: FPGA: Recv ZSGSRD 35537
17-03-17 18:31:42.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:42.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:42.748 -07 000000501 INF: FPGA: Recv ZSGSRD 35535
17-03-17 18:31:42.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:42.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:42.758 -07 000000608 INF: FPGA: Recv ZSGSRD 35541
17-03-17 18:31:42.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:42.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:42.768 -07 000000618 INF: FPGA: Recv ZSGSRD 35541
17-03-17 18:31:42.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:42.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:42.778 -07 000000623 INF: FPGA: Recv ZSGSRD 35538
17-03-17 18:31:42.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:42.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:42.788 -07 000000424 INF: FPGA: Recv ZSGSRD 35536
17-03-17 18:31:42.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:42.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:42.798 -07 000000623 INF: FPGA: Recv ZSGSRD 35541
17-03-17 18:31:42.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:42.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:42.808 -07 000000618 INF: FPGA: Recv ZSGSRD 35546
17-03-17 18:31:42.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:42.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:42.818 -07 000000623 INF: FPGA: Recv ZSGSRD 35534
17-03-17 18:31:42.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:42.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:42.828 -07 000000618 INF: FPGA: Recv ZPIEZORD 31336
17-03-17 18:31:42.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:42.838 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.3 V.
17-03-17 18:31:42.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35540 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35540 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35534 (-167.7 uncal um), Max = 35546 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:31:42.838 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35540, posNoise = 6, negNoise = 6
17-03-17 18:31:42.838 -07 000000610 INF: Z Motor: After move to -0.168620, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:42.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:31:42.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:42.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:42.838 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:42.838 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:42.838 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:42.838 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:42.838 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:42.838 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:42.838 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:31:42.838 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:42.838 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:42.838 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:42.848 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:31:42.848 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:42.848 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:42.848 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:42.858 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:31:42.858 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:31:42.858 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:31:42.858 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:31:42.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 37012 150\n [Camera]
17-03-17 18:31:43.068 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:31:43.458 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:31:43.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:31:43.458 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:43.458 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:31:43.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:31:43.458 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:43.468 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:43.468 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:31:43.468 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:43.468 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:31:43.648 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37012 778
17-03-17 18:31:43.798 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:31:43.858 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:31:43.858 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:31:43.858 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:43.858 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:31:43.858 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:31:43.858 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:43.868 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:31:43.868 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:31:43.868 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:43.878 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:31:43.988 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:31:43.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:31:43.988 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:43.988 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:43.988 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:31:43.988 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:31:43.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:31:43.998 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:43.998 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:43.998 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 18:31:44.178 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:31:44.178 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:44.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 37012 150' command took 2 ms to send, 1308 ms to get response, and 1317 ms overall
17-03-17 18:31:44.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:44.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.168639851529319. ------
17-03-17 18:31:44.188 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:44.188 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17520 mm
17-03-17 18:31:44.188 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:44.188 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:44.188 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38272, sync = True, waitForSettling = False)
17-03-17 18:31:44.188 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:31:44.188 -07 000000478 INF: Z Motor: Moving to -0.175198 mm, started at -0.168640 mm, distance = -6.56 um
17-03-17 18:31:44.198 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:44.198 -07 000000478 INF: FPGA: Xmit ZDACW 38272\n [Z Motor]
17-03-17 18:31:44.198 -07 000000618 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:31:44.198 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:31:44.208 -07 000000478 INF: FPGA: 'ZDACW 38272' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:44.208 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:44.218 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:44.218 -07 000000593 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:31:44.228 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:31:44.228 -07 000000618 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:44.228 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:44.228 -07 000000448 INF: FPGA: Recv ZDACR 38272
17-03-17 18:31:44.228 -07 000000618 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:44.228 -07 000000618 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:31:44.238 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:31:44.238 -07 000000478 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 18:31:44.238 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:44.388 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:31:44.388 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:31:44.388 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:44.388 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:31:44.388 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:31:44.388 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:44.398 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:44.398 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:31:44.398 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:31:44.398 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 18:31:44.408 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:44.408 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 18:31:44.608 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 18:31:44.608 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:31:44.648 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:44.648 -07 000000448 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:31:44.658 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:44.658 -07 000000618 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:44.658 -07 000000618 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:31:44.658 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-17 18:31:45.608 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:45.608 -07 000000448 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:31:45.618 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:45.618 -07 000000618 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:45.638 -07 000000618 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:45.638 -07 000000618 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:31:45.638 -07 000000618 INF: Y Motor: Moved to 69.0278 after 1442 ms (table move)
17-03-17 18:31:45.638 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175198 mm (DAC = 38272)
17-03-17 18:31:45.638 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:45.638 -07 000000501 INF: FPGA: Recv ZSGSRD 36564
17-03-17 18:31:45.648 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:31:45.648 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:45.648 -07 000000501 INF: FPGA: Recv ZSGSRD 36556
17-03-17 18:31:45.658 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:45.658 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:45.658 -07 000000618 INF: FPGA: Recv ZSGSRD 36550
17-03-17 18:31:45.668 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:45.668 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:45.668 -07 000000618 INF: FPGA: Recv ZSGSRD 36565
17-03-17 18:31:45.678 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:45.678 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:45.678 -07 000000608 INF: FPGA: Recv ZSGSRD 36563
17-03-17 18:31:45.688 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:45.688 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:45.688 -07 000000478 INF: FPGA: Recv ZSGSRD 36564
17-03-17 18:31:45.698 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:45.698 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:45.698 -07 000000478 INF: FPGA: Recv ZSGSRD 36563
17-03-17 18:31:45.708 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:45.708 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:45.708 -07 000000429 INF: FPGA: Recv ZSGSRD 36565
17-03-17 18:31:45.718 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:45.718 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:45.718 -07 000000429 INF: FPGA: Recv ZSGSRD 36565
17-03-17 18:31:45.728 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:45.728 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:45.728 -07 000000475 INF: FPGA: Recv ZSGSRD 36555
17-03-17 18:31:45.738 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:45.738 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:45.738 -07 000000475 INF: FPGA: Recv ZPIEZORD 32732
17-03-17 18:31:45.748 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:45.748 -07 000000623 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.840 V. Piezo Error = -8.5 V.
17-03-17 18:31:45.748 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36561 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36564 (-174.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36550 (-174.2 uncal um), Max = 36565 (-174.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:31:45.748 -07 000000623 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36561, posNoise = 4, negNoise = 11
17-03-17 18:31:45.748 -07 000000623 INF: Z Motor: After move to -0.175198, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:45.748 -07 000000623 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 18:31:45.748 -07 000000623 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:31:45.798 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 18:31:45.798 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:45.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:45.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:45.798 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:45.798 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:45.798 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:45.798 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:45.798 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:45.798 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:45.808 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:45.808 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:45.818 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:31:45.818 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 18:31:45.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:45.868 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:46.068 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:46.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:46.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:46.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) start.
17-03-17 18:31:46.108 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:46.108 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:46.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:31:46.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:31:46.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:46.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:31:46.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:31:46.308 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:46.308 -07 000000424 INF: Autofocus start
17-03-17 18:31:46.308 -07 000000424 INF: MeasureProfile start
17-03-17 18:31:46.308 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:46.318 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:46.318 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:46.318 -07 000000424 INF: MeasureProfile done
17-03-17 18:31:46.318 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:31:46.318 -07 000000424 INF: Autofocus finished
17-03-17 18:31:46.358 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.986717,
17-03-17 18:31:46.518 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:46.518 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:31:46.518 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.175198972126057. ----------
17-03-17 18:31:46.518 -07 000000610 INF: Cycle	14	Tile	12	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:46.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36769, sync = True, waitForSettling = True)
17-03-17 18:31:46.528 -07 000000610 INF: Z Motor: Moving to -0.168318 mm, started at -0.175199 mm, distance = 6.88 um
17-03-17 18:31:46.528 -07 000000610 INF: FPGA: Xmit ZDACW 36769\n [Z Motor]
17-03-17 18:31:46.528 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:31:46.538 -07 000000610 INF: FPGA: 'ZDACW 36769' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:46.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:46.538 -07 000000475 INF: FPGA: Recv ZDACR 36769
17-03-17 18:31:46.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:46.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:46.598 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:31:46.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:31:46.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:46.698 -07 000000475 INF: FPGA: Recv ZSGSRD 35494
17-03-17 18:31:46.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:46.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:46.708 -07 000000608 INF: FPGA: Recv ZSGSRD 35490
17-03-17 18:31:46.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:46.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:46.718 -07 000000608 INF: FPGA: Recv ZSGSRD 35497
17-03-17 18:31:46.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:46.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:46.728 -07 000000475 INF: FPGA: Recv ZSGSRD 35488
17-03-17 18:31:46.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:46.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:46.738 -07 000000608 INF: FPGA: Recv ZSGSRD 35490
17-03-17 18:31:46.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:46.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:46.748 -07 000000475 INF: FPGA: Recv ZSGSRD 35494
17-03-17 18:31:46.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:46.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:46.758 -07 000000475 INF: FPGA: Recv ZSGSRD 35487
17-03-17 18:31:46.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:46.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:46.768 -07 000000475 INF: FPGA: Recv ZSGSRD 35496
17-03-17 18:31:46.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:46.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:46.778 -07 000000475 INF: FPGA: Recv ZSGSRD 35494
17-03-17 18:31:46.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:31:46.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:46.788 -07 000000475 INF: FPGA: Recv ZSGSRD 35495
17-03-17 18:31:46.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:46.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:46.798 -07 000000012 INF: FPGA: Recv ZPIEZORD 31296
17-03-17 18:31:46.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:46.808 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.611 V. Piezo Error = -9.2 V.
17-03-17 18:31:46.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35492 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35494 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35487 (-167.4 uncal um), Max = 35497 (-167.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:31:46.808 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35492, posNoise = 5, negNoise = 5
17-03-17 18:31:46.808 -07 000000610 INF: Z Motor: After move to -0.168318, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:46.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 18:31:46.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:46.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:46.808 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:46.808 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:46.808 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:46.808 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:46.808 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:46.808 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:46.808 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:46.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:46.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:31:46.808 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:46.808 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:46.818 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:46.818 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:31:46.818 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:46.828 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:31:46.828 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:31:46.828 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:31:46.828 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:31:46.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36946 150\n [Camera]
17-03-17 18:31:47.028 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:31:47.428 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:31:47.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:31:47.428 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:47.428 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:47.428 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 18:31:47.428 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:31:47.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:31:47.428 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:47.428 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:47.428 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1070567016, 0x0, 418435064) start.
17-03-17 18:31:47.618 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36946 778
17-03-17 18:31:47.768 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:31:47.818 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:31:47.818 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:31:47.818 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:47.828 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1070567016, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:31:47.828 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:31:47.828 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:47.828 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:47.828 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:31:47.828 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:47.838 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:31:47.958 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:31:47.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:31:47.958 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:47.958 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:47.958 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1105989280, 0x0, 391868352) start.
17-03-17 18:31:47.958 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:31:47.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:31:47.958 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:47.958 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:47.958 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:31:48.148 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:31:48.148 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:48.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36946 150' command took 2 ms to send, 1308 ms to get response, and 1319 ms overall
17-03-17 18:31:48.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:48.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.168331489346515. ------
17-03-17 18:31:48.278 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:48.278 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17478 mm
17-03-17 18:31:48.278 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:48.278 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:48.278 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:31:48.278 -07 000000478 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:31:48.278 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38181, sync = True, waitForSettling = False)
17-03-17 18:31:48.278 -07 000000512 INF: Z Motor: Moving to -0.174781 mm, started at -0.168331 mm, distance = -6.45 um
17-03-17 18:31:48.288 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:48.288 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:48.288 -07 000000618 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:31:48.298 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:31:48.298 -07 000000512 INF: FPGA: Xmit ZDACW 38181\n [Z Motor]
17-03-17 18:31:48.298 -07 000000478 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:48.298 -07 000000478 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:48.298 -07 000000478 INF: Y Motor: Moving 1352 steps-30
17-03-17 18:31:48.298 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:31:48.308 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:48.308 -07 000000512 INF: FPGA: 'ZDACW 38181' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 18:31:48.318 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:48.328 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:48.328 -07 000000618 INF: FPGA: Recv ZDACR 38181
17-03-17 18:31:48.338 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:31:48.338 -07 000000512 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:31:48.358 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1105989280, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:31:48.358 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:31:48.358 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:48.358 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:31:48.358 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:31:48.358 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:48.358 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:48.358 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:31:48.358 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:31:48.368 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:31:48.508 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:48.508 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:31:48.688 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 18:31:48.688 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:31:48.728 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:48.728 -07 000000618 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:31:48.738 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:48.738 -07 000000478 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:48.738 -07 000000478 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:31:48.738 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 18:31:49.688 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:49.688 -07 000000618 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:31:49.698 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:49.698 -07 000000478 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:49.718 -07 000000478 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:49.718 -07 000000478 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:31:49.718 -07 000000478 INF: Y Motor: Moved to 69.8638 after 1436 ms (table move)
17-03-17 18:31:49.718 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174781 mm (DAC = 38181)
17-03-17 18:31:49.718 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:49.728 -07 000000482 INF: FPGA: Recv ZSGSRD 36498
17-03-17 18:31:49.728 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:31:49.728 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:49.728 -07 000000012 INF: FPGA: Recv ZSGSRD 36491
17-03-17 18:31:49.738 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:49.738 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:49.738 -07 000000512 INF: FPGA: Recv ZSGSRD 36498
17-03-17 18:31:49.748 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:49.748 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:49.748 -07 000000618 INF: FPGA: Recv ZSGSRD 36497
17-03-17 18:31:49.758 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:49.758 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:50.748 -07 000000012 INF: FPGA: Recv ZSGSRD 36506
17-03-17 18:31:50.748 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 980 ms to get response, and 990 ms overall
17-03-17 18:31:50.748 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:50.748 -07 000000618 INF: FPGA: Recv ZSGSRD 36494
17-03-17 18:31:50.758 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:50.758 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:50.758 -07 000000482 INF: FPGA: Recv ZSGSRD 36502
17-03-17 18:31:50.768 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:50.768 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:50.768 -07 000000478 INF: FPGA: Recv ZSGSRD 36502
17-03-17 18:31:50.778 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:50.778 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:50.778 -07 000000482 INF: FPGA: Recv ZSGSRD 36497
17-03-17 18:31:50.788 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:50.788 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:50.788 -07 000000482 INF: FPGA: Recv ZSGSRD 36500
17-03-17 18:31:50.798 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:50.798 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:50.798 -07 000000618 INF: FPGA: Recv ZPIEZORD 32637
17-03-17 18:31:50.808 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:50.808 -07 000000415 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.826 V. Piezo Error = -8.5 V.
17-03-17 18:31:50.808 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36498 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36498 (-173.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36491 (-173.9 uncal um), Max = 36506 (-174.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:31:50.808 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36498, posNoise = 8, negNoise = 7
17-03-17 18:31:50.808 -07 000000415 INF: Z Motor: After move to -0.174781, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:50.808 -07 000000415 INF: Z Motor: Settle wait time = 1439 ms, measure time = 1086 ms (allowed 150 ms), total time = 2525 ms
17-03-17 18:31:50.808 -07 000000415 INF: Z Motor: Warning: Actual position measuring time = 1086 ms, longer than max expected time of 150 ms
17-03-17 18:31:50.808 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2529 ms
17-03-17 18:31:50.808 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:50.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:50.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:50.808 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:50.808 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:50.808 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:50.808 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:50.808 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:50.808 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:50.818 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:31:50.818 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:50.828 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:31:50.828 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:31:50.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:50.878 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:51.078 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:51.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:51.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:51.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:31:51.118 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:51.118 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:51.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 18:31:51.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:31:51.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:51.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:31:51.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:31:51.218 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:51.218 -07 000000012 INF: Autofocus start
17-03-17 18:31:51.218 -07 000000012 INF: MeasureProfile start
17-03-17 18:31:51.228 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:51.228 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:51.228 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:51.228 -07 000000012 INF: MeasureProfile done
17-03-17 18:31:51.228 -07 000000012 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:31:51.228 -07 000000012 INF: Autofocus finished
17-03-17 18:31:51.428 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:51.428 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:31:51.428 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.174794246761126. ----------
17-03-17 18:31:51.428 -07 000000610 INF: Cycle	14	Tile	13	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:51.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36678, sync = True, waitForSettling = True)
17-03-17 18:31:51.438 -07 000000610 INF: Z Motor: Moving to -0.167901 mm, started at -0.174794 mm, distance = 6.89 um
17-03-17 18:31:51.438 -07 000000610 INF: FPGA: Xmit ZDACW 36678\n [Z Motor]
17-03-17 18:31:51.438 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:31:51.448 -07 000000610 INF: FPGA: 'ZDACW 36678' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:51.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:51.448 -07 000000012 INF: FPGA: Recv ZDACR 36678
17-03-17 18:31:51.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:51.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:51.598 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:31:51.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:51.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:31:51.638 -07 000000478 INF: FPGA: Recv ZSGSRD 35429
17-03-17 18:31:51.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 40 ms overall
17-03-17 18:31:51.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:51.648 -07 000000429 INF: FPGA: Recv ZSGSRD 35430
17-03-17 18:31:51.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:51.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:51.658 -07 000000478 INF: FPGA: Recv ZSGSRD 35432
17-03-17 18:31:51.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:51.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:51.668 -07 000000012 INF: FPGA: Recv ZSGSRD 35420
17-03-17 18:31:51.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:51.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:51.678 -07 000000478 INF: FPGA: Recv ZSGSRD 35428
17-03-17 18:31:51.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:51.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:51.688 -07 000000478 INF: FPGA: Recv ZSGSRD 35427
17-03-17 18:31:51.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:51.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:51.698 -07 000000478 INF: FPGA: Recv ZSGSRD 35421
17-03-17 18:31:51.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:51.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:51.718 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.999021,
17-03-17 18:31:51.718 -07 000000478 INF: FPGA: Recv ZSGSRD 35430
17-03-17 18:31:51.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:31:51.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:51.728 -07 000000608 INF: FPGA: Recv ZSGSRD 35431
17-03-17 18:31:51.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:51.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:51.748 -07 000000429 INF: FPGA: Recv ZSGSRD 35425
17-03-17 18:31:51.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:31:51.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:51.758 -07 000000478 INF: FPGA: Recv ZPIEZORD 31225
17-03-17 18:31:51.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:51.768 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.597 V. Piezo Error = -9.3 V.
17-03-17 18:31:51.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35427 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35428 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35420 (-167.0 uncal um), Max = 35432 (-167.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:31:51.768 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35427, posNoise = 5, negNoise = 7
17-03-17 18:31:51.768 -07 000000610 INF: Z Motor: After move to -0.167901, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:51.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-17 18:31:51.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:51.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:51.768 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:51.768 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:51.768 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:51.768 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:51.768 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:51.768 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:51.768 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:51.768 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:51.768 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:31:51.768 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:51.768 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:31:51.768 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:51.768 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:31:51.778 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:51.788 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 18:31:51.788 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:31:51.788 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:31:51.788 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 18:31:51.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36855 150\n [Camera]
17-03-17 18:31:51.988 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:31:52.388 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:31:52.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:31:52.388 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:52.388 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:31:52.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:31:52.388 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:52.388 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:52.388 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:31:52.398 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:52.398 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:31:52.578 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36855 778
17-03-17 18:31:52.728 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:31:52.768 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:31:52.768 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:31:52.768 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:52.768 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:52.778 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:31:52.778 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 18:31:52.778 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:31:52.778 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:52.788 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:52.788 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:31:52.918 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:31:52.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:31:52.918 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:52.928 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:52.928 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:31:52.928 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:31:52.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:31:52.928 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:52.938 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:52.938 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1070567016, 0x0, 418435064) start.
17-03-17 18:31:53.108 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:31:53.108 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:53.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36855 150' command took 2 ms to send, 1307 ms to get response, and 1321 ms overall
17-03-17 18:31:53.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:53.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.1679139155573. ------
17-03-17 18:31:53.118 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:53.118 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17420 mm
17-03-17 18:31:53.118 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:53.118 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:31:53.118 -07 000000482 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 18:31:53.118 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38055, sync = True, waitForSettling = False)
17-03-17 18:31:53.118 -07 000000448 INF: Z Motor: Moving to -0.174205 mm, started at -0.167914 mm, distance = -6.29 um
17-03-17 18:31:53.118 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:53.128 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:53.128 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:53.128 -07 000000012 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:31:53.138 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:31:53.138 -07 000000482 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:53.138 -07 000000448 INF: FPGA: Xmit ZDACW 38055\n [Z Motor]
17-03-17 18:31:53.138 -07 000000482 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:53.248 -07 000000482 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:31:53.248 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:31:53.248 -07 000000448 INF: FPGA: 'ZDACW 38055' command took 1 ms to send, 0 ms to get response, and 129 ms overall
17-03-17 18:31:53.248 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:53.258 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:53.258 -07 000000593 INF: FPGA: Recv ZDACR 38055
17-03-17 18:31:53.268 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:53.268 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:31:53.268 -07 000000448 INF: Z Motor: MoveAbsStepped took 145 ms (did NOT wait for settling yet))
17-03-17 18:31:53.328 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:31:53.328 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:31:53.328 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:53.328 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1070567016, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 18:31:53.328 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:31:53.328 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:53.328 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:53.328 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 18:31:53.328 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:53.338 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:31:53.448 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:53.448 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 198 ms to get response, and 327 ms overall
17-03-17 18:31:53.638 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:31:53.638 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:31:53.678 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:53.678 -07 000000478 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:31:53.688 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:53.688 -07 000000482 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:53.688 -07 000000482 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:31:53.688 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 18:31:54.638 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:54.638 -07 000000475 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:31:54.648 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:54.648 -07 000000482 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:54.668 -07 000000482 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:54.668 -07 000000482 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:31:54.668 -07 000000482 INF: Y Motor: Moved to 70.6890 after 1545 ms (table move)
17-03-17 18:31:54.668 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174205 mm (DAC = 38055)
17-03-17 18:31:54.668 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:54.668 -07 000000482 INF: FPGA: Recv ZSGSRD 36405
17-03-17 18:31:54.678 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:54.678 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:54.678 -07 000000501 INF: FPGA: Recv ZSGSRD 36403
17-03-17 18:31:54.688 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:54.688 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:54.688 -07 000000482 INF: FPGA: Recv ZSGSRD 36408
17-03-17 18:31:54.698 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:54.698 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:54.698 -07 000000623 INF: FPGA: Recv ZSGSRD 36409
17-03-17 18:31:54.708 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:54.708 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:54.708 -07 000000482 INF: FPGA: Recv ZSGSRD 36405
17-03-17 18:31:54.718 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:54.718 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:54.718 -07 000000623 INF: FPGA: Recv ZSGSRD 36413
17-03-17 18:31:54.728 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:54.728 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:54.728 -07 000000482 INF: FPGA: Recv ZSGSRD 36411
17-03-17 18:31:54.738 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:54.738 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:54.738 -07 000000482 INF: FPGA: Recv ZSGSRD 36406
17-03-17 18:31:54.748 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:54.748 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:54.748 -07 000000482 INF: FPGA: Recv ZSGSRD 36405
17-03-17 18:31:54.758 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:54.758 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:54.758 -07 000000623 INF: FPGA: Recv ZSGSRD 36404
17-03-17 18:31:54.768 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:54.768 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:54.768 -07 000000623 INF: FPGA: Recv ZPIEZORD 32491
17-03-17 18:31:54.778 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:54.778 -07 000000424 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.807 V. Piezo Error = -8.7 V.
17-03-17 18:31:54.778 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36407 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36406 (-173.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36403 (-173.3 uncal um), Max = 36413 (-173.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:31:54.778 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36407, posNoise = 6, negNoise = 4
17-03-17 18:31:54.778 -07 000000424 INF: Z Motor: After move to -0.174205, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:54.778 -07 000000424 INF: Z Motor: Settle wait time = 1548 ms, measure time = 107 ms (allowed 150 ms), total time = 1655 ms
17-03-17 18:31:54.778 -07 000000424 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:31:54.828 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1707 ms
17-03-17 18:31:54.828 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:54.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:54.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:54.828 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:54.828 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:54.828 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:54.828 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:54.828 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:31:54.828 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:54.828 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:31:54.838 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:54.848 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:31:54.848 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:31:54.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:54.898 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:55.088 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:55.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:55.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:55.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:31:55.128 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:55.128 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:55.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 286 ms overall
17-03-17 18:31:55.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:31:55.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:55.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:31:55.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:31:55.238 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:55.238 -07 000000424 INF: Autofocus start
17-03-17 18:31:55.238 -07 000000424 INF: MeasureProfile start
17-03-17 18:31:55.248 -07 000000424 INF: MeasureProfile done
17-03-17 18:31:55.248 -07 000000424 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:31:55.248 -07 000000424 INF: Autofocus finished
17-03-17 18:31:55.248 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:55.248 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 14 ms overall
17-03-17 18:31:55.248 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:55.458 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:31:55.458 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 18:31:55.458 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.174209643456226. ----------
17-03-17 18:31:55.458 -07 000000610 INF: Cycle	14	Tile	14	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:31:55.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36605, sync = True, waitForSettling = True)
17-03-17 18:31:55.468 -07 000000610 INF: Z Motor: Moving to -0.167567 mm, started at -0.174210 mm, distance = 6.64 um
17-03-17 18:31:55.468 -07 000000610 INF: FPGA: Xmit ZDACW 36605\n [Z Motor]
17-03-17 18:31:55.468 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:31:55.478 -07 000000610 INF: FPGA: 'ZDACW 36605' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:55.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:55.478 -07 000000623 INF: FPGA: Recv ZDACR 36605
17-03-17 18:31:55.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:55.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:31:55.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:55.638 -07 000000424 INF: FPGA: Recv ZSGSRD 35369
17-03-17 18:31:55.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:55.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:55.648 -07 000000424 INF: FPGA: Recv ZSGSRD 35382
17-03-17 18:31:55.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:55.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:55.658 -07 000000623 INF: FPGA: Recv ZSGSRD 35372
17-03-17 18:31:55.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:55.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:55.668 -07 000000424 INF: FPGA: Recv ZSGSRD 35372
17-03-17 18:31:55.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:55.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:55.678 -07 000000424 INF: FPGA: Recv ZSGSRD 35372
17-03-17 18:31:55.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:55.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:55.688 -07 000000424 INF: FPGA: Recv ZSGSRD 35377
17-03-17 18:31:55.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:55.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:55.698 -07 000000623 INF: FPGA: Recv ZSGSRD 35379
17-03-17 18:31:55.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:55.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:55.708 -07 000000415 INF: FPGA: Recv ZSGSRD 35371
17-03-17 18:31:55.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:55.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:55.718 -07 000000618 INF: FPGA: Recv ZSGSRD 35370
17-03-17 18:31:55.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:55.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:55.728 -07 000000618 INF: FPGA: Recv ZSGSRD 35375
17-03-17 18:31:55.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:55.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:55.738 -07 000000424 INF: FPGA: Recv ZPIEZORD 31142
17-03-17 18:31:55.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:55.748 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -9.3 V.
17-03-17 18:31:55.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35374 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35372 (-166.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35369 (-166.7 uncal um), Max = 35382 (-166.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:31:55.748 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35374, posNoise = 8, negNoise = 5
17-03-17 18:31:55.748 -07 000000610 INF: Z Motor: After move to -0.167567, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:55.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:31:55.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:55.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:55.748 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:55.748 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:55.748 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:31:55.748 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:31:55.748 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:31:55.748 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:55.748 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 18:31:55.748 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:31:55.748 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:31:55.748 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:31:55.758 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:31:55.758 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:31:55.758 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:55.758 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:31:55.768 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:31:55.768 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:31:55.768 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:31:55.768 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 18:31:55.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36782 150\n [Camera]
17-03-17 18:31:55.968 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:31:56.368 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:31:56.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:31:56.368 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:56.368 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:31:56.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:31:56.368 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:56.368 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:56.368 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:31:56.378 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:56.378 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:31:56.558 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36782 778
17-03-17 18:31:56.598 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:31:56.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:31:56.708 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:31:56.768 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:31:56.768 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:31:56.768 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:56.768 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:31:56.768 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:31:56.768 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:56.768 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:56.768 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:31:56.778 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:31:56.778 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:31:56.898 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:31:56.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:31:56.898 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:31:56.898 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:31:56.898 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:31:56.898 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:31:56.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:31:56.898 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:31:56.898 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:31:56.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 18:31:57.088 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:31:57.088 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:31:57.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36782 150' command took 2 ms to send, 1307 ms to get response, and 1316 ms overall
17-03-17 18:31:57.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:31:57.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.167573432313787. ------
17-03-17 18:31:57.098 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17428 mm
17-03-17 18:31:57.098 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:31:57.098 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:57.098 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:57.098 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38071, sync = True, waitForSettling = False)
17-03-17 18:31:57.098 -07 000000478 INF: Z Motor: Moving to -0.174278 mm, started at -0.167573 mm, distance = -6.70 um
17-03-17 18:31:57.098 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:31:57.098 -07 000000415 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 18:31:57.108 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:31:57.118 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:57.118 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.99219,
17-03-17 18:31:57.118 -07 000000623 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:31:57.128 -07 000000478 INF: FPGA: Xmit ZDACW 38071\n [Z Motor]
17-03-17 18:31:57.128 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:31:57.128 -07 000000415 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:57.128 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:31:57.128 -07 000000415 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:31:57.128 -07 000000415 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:31:57.138 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:31:57.138 -07 000000478 INF: FPGA: 'ZDACW 38071' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 18:31:57.158 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:31:57.168 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:31:57.168 -07 000000623 INF: FPGA: Recv ZDACR 38071
17-03-17 18:31:57.178 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 18:31:57.178 -07 000000478 INF: Z Motor: MoveAbsStepped took 71 ms (did NOT wait for settling yet))
17-03-17 18:31:57.278 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 18:31:57.278 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 18:31:57.278 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:57.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:31:57.278 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:31:57.278 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:57.288 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:31:57.288 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:31:57.288 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:31:57.298 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:31:58.248 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:31:58.248 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:31:58.248 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1100 ms to get response, and 1140 ms overall
17-03-17 18:31:58.248 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1080 ms to get response, and 1114 ms overall
17-03-17 18:31:58.278 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:58.278 -07 000000429 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:31:58.288 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:31:58.288 -07 000000415 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:58.288 -07 000000415 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:31:58.288 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1115 ms, distance = 0.844 mm, average velocity = 0.757 mm/sec
17-03-17 18:31:59.238 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:31:59.238 -07 000000429 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:31:59.248 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:31:59.248 -07 000000415 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:31:59.268 -07 000000415 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:31:59.268 -07 000000415 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:31:59.268 -07 000000415 INF: Y Motor: Moved to 71.5195 after 2166 ms (table move)
17-03-17 18:31:59.268 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174278 mm (DAC = 38071)
17-03-17 18:31:59.268 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:59.278 -07 000000415 INF: FPGA: Recv ZSGSRD 36418
17-03-17 18:31:59.278 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:31:59.278 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:59.278 -07 000000415 INF: FPGA: Recv ZSGSRD 36422
17-03-17 18:31:59.288 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:31:59.288 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:59.288 -07 000000429 INF: FPGA: Recv ZSGSRD 36420
17-03-17 18:31:59.298 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:59.298 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:59.298 -07 000000429 INF: FPGA: Recv ZSGSRD 36418
17-03-17 18:31:59.308 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:59.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:59.308 -07 000000415 INF: FPGA: Recv ZSGSRD 36420
17-03-17 18:31:59.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:59.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:59.318 -07 000000415 INF: FPGA: Recv ZSGSRD 36417
17-03-17 18:31:59.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:59.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:59.328 -07 000000429 INF: FPGA: Recv ZSGSRD 36418
17-03-17 18:31:59.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:59.338 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:59.338 -07 000000415 INF: FPGA: Recv ZSGSRD 36418
17-03-17 18:31:59.348 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:59.348 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:59.348 -07 000000501 INF: FPGA: Recv ZSGSRD 36414
17-03-17 18:31:59.358 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:59.358 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:31:59.358 -07 000000448 INF: FPGA: Recv ZSGSRD 36417
17-03-17 18:31:59.368 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:59.368 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:31:59.368 -07 000000429 INF: FPGA: Recv ZPIEZORD 32548
17-03-17 18:31:59.378 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:31:59.378 -07 000000618 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.809 V. Piezo Error = -8.6 V.
17-03-17 18:31:59.378 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36418 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36418 (-173.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36414 (-173.4 uncal um), Max = 36422 (-173.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:31:59.378 -07 000000618 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36418, posNoise = 4, negNoise = 4
17-03-17 18:31:59.378 -07 000000618 INF: Z Motor: After move to -0.174278, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:31:59.378 -07 000000618 INF: Z Motor: Settle wait time = 2170 ms, measure time = 102 ms (allowed 150 ms), total time = 2272 ms
17-03-17 18:31:59.378 -07 000000618 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:31:59.428 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2327 ms
17-03-17 18:31:59.428 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:31:59.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:31:59.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:31:59.428 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:31:59.428 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:31:59.428 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:31:59.428 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:31:59.428 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:31:59.428 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:31:59.438 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:31:59.438 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:31:59.438 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:31:59.448 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:31:59.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:31:59.498 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:31:59.698 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:31:59.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:31:59.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:31:59.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) start.
17-03-17 18:31:59.738 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:31:59.738 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 18:31:59.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 288 ms overall
17-03-17 18:31:59.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:31:59.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:31:59.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:31:59.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:31:59.838 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:31:59.838 -07 000000512 INF: Autofocus start
17-03-17 18:31:59.838 -07 000000512 INF: MeasureProfile start
17-03-17 18:31:59.838 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:31:59.848 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:31:59.848 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:31:59.848 -07 000000512 INF: MeasureProfile done
17-03-17 18:31:59.848 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-17 18:31:59.848 -07 000000512 INF: Autofocus finished
17-03-17 18:32:00.048 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:32:00.048 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:32:00.048 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.174280309789785. ----------
17-03-17 18:32:00.048 -07 000000610 INF: Cycle	14	Tile	15	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:32:00.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36568, sync = True, waitForSettling = True)
17-03-17 18:32:00.058 -07 000000610 INF: Z Motor: Moving to -0.167398 mm, started at -0.174280 mm, distance = 6.88 um
17-03-17 18:32:00.058 -07 000000610 INF: FPGA: Xmit ZDACW 36568\n [Z Motor]
17-03-17 18:32:00.058 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:32:00.068 -07 000000610 INF: FPGA: 'ZDACW 36568' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:00.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:00.068 -07 000000501 INF: FPGA: Recv ZDACR 36568
17-03-17 18:32:00.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:00.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:32:00.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:00.228 -07 000000448 INF: FPGA: Recv ZSGSRD 35347
17-03-17 18:32:00.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:00.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:00.238 -07 000000512 INF: FPGA: Recv ZSGSRD 35347
17-03-17 18:32:00.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:00.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:00.248 -07 000000429 INF: FPGA: Recv ZSGSRD 35348
17-03-17 18:32:00.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:00.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:00.258 -07 000000415 INF: FPGA: Recv ZSGSRD 35347
17-03-17 18:32:00.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:00.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:00.268 -07 000000482 INF: FPGA: Recv ZSGSRD 35353
17-03-17 18:32:00.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:00.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:00.278 -07 000000512 INF: FPGA: Recv ZSGSRD 35345
17-03-17 18:32:00.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:00.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:00.288 -07 000000482 INF: FPGA: Recv ZSGSRD 35350
17-03-17 18:32:00.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:00.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:00.298 -07 000000618 INF: FPGA: Recv ZSGSRD 35350
17-03-17 18:32:00.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:00.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:00.308 -07 000000415 INF: FPGA: Recv ZSGSRD 35347
17-03-17 18:32:00.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:00.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:00.318 -07 000000501 INF: FPGA: Recv ZSGSRD 35348
17-03-17 18:32:00.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:00.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:00.328 -07 000000448 INF: FPGA: Recv ZPIEZORD 31110
17-03-17 18:32:00.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:00.338 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.580 V. Piezo Error = -9.3 V.
17-03-17 18:32:00.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35348 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35348 (-166.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35345 (-166.5 uncal um), Max = 35353 (-166.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:32:00.338 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35348, posNoise = 5, negNoise = 3
17-03-17 18:32:00.338 -07 000000610 INF: Z Motor: After move to -0.167398, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:00.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:32:00.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:00.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:00.338 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:00.338 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:32:00.338 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:00.338 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:32:00.338 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:32:00.338 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:00.338 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:00.338 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:32:00.338 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:32:00.338 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:32:00.338 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:00.338 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:32:00.348 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:32:00.348 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:32:00.358 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:32:00.358 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:32:00.358 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:32:00.358 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:32:00.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36745 150\n [Camera]
17-03-17 18:32:00.558 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:32:00.958 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:32:00.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:32:00.958 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:00.958 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:00.958 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:32:00.958 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:32:00.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:32:00.958 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:00.958 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:00.958 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:32:01.148 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36745 778
17-03-17 18:32:01.298 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:32:01.338 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 18:32:01.338 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 18:32:01.338 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:32:01.338 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:01.338 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:32:01.338 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:01.338 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:01.338 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:32:01.338 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:32:01.348 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:32:01.488 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:32:01.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:32:01.488 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:01.488 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:01.488 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1105989280, 0x0, 391868352) start.
17-03-17 18:32:01.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:32:01.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:32:01.488 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:01.488 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:01.488 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:32:01.598 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:32:01.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:32:01.898 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1105989280, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:32:01.898 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:32:01.898 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:01.898 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:32:01.898 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:32:01.898 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:01.898 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:01.898 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:32:01.898 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:32:02.018 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-17 18:32:02.148 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:32:02.148 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:32:02.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36745 150' command took 2 ms to send, 1779 ms to get response, and 1789 ms overall
17-03-17 18:32:02.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:32:02.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.167406402798101. ------
17-03-17 18:32:02.158 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:02.228 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17328 mm
17-03-17 18:32:02.228 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:32:02.748 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:02.748 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 580 ms to get response, and 585 ms overall
17-03-17 18:32:02.748 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:32:02.748 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:32:02.748 -07 000000424 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 18:32:02.758 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:03.748 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37853, sync = True, waitForSettling = False)
17-03-17 18:32:03.748 -07 000000608 INF: Z Motor: Moving to -0.173280 mm, started at -0.167406 mm, distance = -5.87 um
17-03-17 18:32:03.748 -07 000000608 INF: FPGA: Xmit ZDACW 37853\n [Z Motor]
17-03-17 18:32:04.748 -07 000000623 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:32:04.748 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:32:04.748 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:32:04.748 -07 000000608 INF: FPGA: 'ZDACW 37853' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 18:32:04.748 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1980 ms to get response, and 1991 ms overall
17-03-17 18:32:04.748 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:04.748 -07 000000424 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:04.748 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1990 ms to get response, and 1999 ms overall
17-03-17 18:32:04.748 -07 000000429 INF: FPGA: Recv ZDACR 37853
17-03-17 18:32:04.748 -07 000000424 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:32:04.748 -07 000000424 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:32:04.758 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:32:04.758 -07 000000608 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 18:32:04.758 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:32:05.058 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.012614,
17-03-17 18:32:05.128 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:32:05.128 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 18:32:05.168 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:05.168 -07 000000623 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:32:05.178 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:32:05.178 -07 000000424 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:05.178 -07 000000424 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:32:05.178 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.843 mm, average velocity = 2.207 mm/sec
17-03-17 18:32:06.128 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:06.128 -07 000000429 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:32:06.138 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:06.138 -07 000000424 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:06.158 -07 000000424 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:32:06.158 -07 000000424 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:32:06.158 -07 000000424 INF: Y Motor: Moved to 72.3501 after 3401 ms (table move)
17-03-17 18:32:06.158 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173280 mm (DAC = 37853)
17-03-17 18:32:06.158 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:06.158 -07 000000012 INF: FPGA: Recv ZSGSRD 36266
17-03-17 18:32:06.168 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:32:06.168 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:06.168 -07 000000429 INF: FPGA: Recv ZSGSRD 36262
17-03-17 18:32:06.178 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:06.178 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:06.178 -07 000000012 INF: FPGA: Recv ZSGSRD 36261
17-03-17 18:32:06.188 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:06.188 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:06.188 -07 000000424 INF: FPGA: Recv ZSGSRD 36261
17-03-17 18:32:06.198 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:06.198 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:06.198 -07 000000012 INF: FPGA: Recv ZSGSRD 36266
17-03-17 18:32:06.208 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:06.208 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:06.208 -07 000000424 INF: FPGA: Recv ZSGSRD 36265
17-03-17 18:32:06.218 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:06.218 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:06.218 -07 000000429 INF: FPGA: Recv ZSGSRD 36268
17-03-17 18:32:06.228 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:06.228 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:06.228 -07 000000478 INF: FPGA: Recv ZSGSRD 36263
17-03-17 18:32:06.238 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:06.238 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:06.238 -07 000000593 INF: FPGA: Recv ZSGSRD 36264
17-03-17 18:32:06.248 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:06.248 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:06.248 -07 000000478 INF: FPGA: Recv ZSGSRD 36270
17-03-17 18:32:06.258 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:06.258 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:06.258 -07 000000012 INF: FPGA: Recv ZPIEZORD 32378
17-03-17 18:32:06.268 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:06.268 -07 000000618 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.776 V. Piezo Error = -8.6 V.
17-03-17 18:32:06.268 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36265 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36264 (-172.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36261 (-172.4 uncal um), Max = 36270 (-172.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:32:06.268 -07 000000618 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36265, posNoise = 5, negNoise = 4
17-03-17 18:32:06.268 -07 000000618 INF: Z Motor: After move to -0.173280, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:06.268 -07 000000618 INF: Z Motor: Settle wait time = 2413 ms, measure time = 105 ms (allowed 150 ms), total time = 2518 ms
17-03-17 18:32:06.268 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:32:06.318 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4088 ms
17-03-17 18:32:06.318 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:32:06.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:06.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:06.318 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:06.318 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:06.318 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:32:06.318 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:06.318 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:06.318 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:32:06.328 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:06.328 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:32:06.328 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:32:06.328 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:32:06.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:32:06.378 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:32:06.578 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:32:06.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:32:06.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:32:06.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:32:06.598 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:32:06.618 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:32:06.618 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 18:32:06.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:32:06.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:32:06.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:06.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:32:06.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 18:32:06.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:32:06.818 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:06.818 -07 000000475 INF: Autofocus start
17-03-17 18:32:06.818 -07 000000475 INF: MeasureProfile start
17-03-17 18:32:06.818 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:06.828 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:06.828 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:32:06.828 -07 000000475 INF: MeasureProfile done
17-03-17 18:32:06.828 -07 000000475 INF: X=32  Z correction [um]=0.09220707
17-03-17 18:32:06.828 -07 000000475 INF: Autofocus finished
17-03-17 18:32:07.028 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:32:07.028 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 18:32:07.028 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.173297405332096. ----------
17-03-17 18:32:07.038 -07 000000610 INF: Cycle	14	Tile	16	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:32:07.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36385, sync = True, waitForSettling = True)
17-03-17 18:32:07.038 -07 000000610 INF: Z Motor: Moving to -0.166560 mm, started at -0.173297 mm, distance = 6.74 um
17-03-17 18:32:07.038 -07 000000610 INF: FPGA: Xmit ZDACW 36385\n [Z Motor]
17-03-17 18:32:07.038 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:32:07.048 -07 000000610 INF: FPGA: 'ZDACW 36385' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:32:07.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:07.048 -07 000000618 INF: FPGA: Recv ZDACR 36385
17-03-17 18:32:07.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:07.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:32:07.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:07.208 -07 000000623 INF: FPGA: Recv ZSGSRD 35223
17-03-17 18:32:07.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:07.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:07.218 -07 000000478 INF: FPGA: Recv ZSGSRD 35222
17-03-17 18:32:07.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:07.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:07.228 -07 000000593 INF: FPGA: Recv ZSGSRD 35210
17-03-17 18:32:07.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:07.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:07.238 -07 000000429 INF: FPGA: Recv ZSGSRD 35212
17-03-17 18:32:07.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:07.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:07.248 -07 000000593 INF: FPGA: Recv ZSGSRD 35228
17-03-17 18:32:07.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:07.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:07.258 -07 000000618 INF: FPGA: Recv ZSGSRD 35216
17-03-17 18:32:07.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:07.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:07.268 -07 000000415 INF: FPGA: Recv ZSGSRD 35214
17-03-17 18:32:07.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:07.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:07.278 -07 000000012 INF: FPGA: Recv ZSGSRD 35218
17-03-17 18:32:07.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:07.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:07.288 -07 000000623 INF: FPGA: Recv ZSGSRD 35218
17-03-17 18:32:07.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:07.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:07.298 -07 000000623 INF: FPGA: Recv ZSGSRD 35223
17-03-17 18:32:07.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:07.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:07.308 -07 000000478 INF: FPGA: Recv ZPIEZORD 30956
17-03-17 18:32:07.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:07.318 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.4 V.
17-03-17 18:32:07.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35218 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35218 (-165.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35210 (-165.7 uncal um), Max = 35228 (-165.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:32:07.318 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35218, posNoise = 10, negNoise = 8
17-03-17 18:32:07.318 -07 000000610 INF: Z Motor: After move to -0.166560, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:07.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:32:07.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:07.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:07.318 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:07.318 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:32:07.318 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:07.318 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:32:07.318 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:32:07.318 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:32:07.318 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:32:07.318 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:07.318 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:32:07.318 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:07.328 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:32:07.328 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:32:07.328 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:32:07.328 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:32:07.338 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 18:32:07.338 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:32:07.338 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 18:32:07.338 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:32:07.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36562 150\n [Camera]
17-03-17 18:32:07.538 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:32:07.938 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:32:07.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:32:07.938 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:07.938 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:32:07.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:32:07.938 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:07.948 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:07.948 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:32:07.948 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:07.948 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:32:08.318 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 18:32:08.318 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 18:32:08.318 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:08.328 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:08.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 18:32:08.328 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:32:08.328 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:08.328 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:08.328 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:32:08.328 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:32:08.358 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36562 780
17-03-17 18:32:08.358 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:32:08.468 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:32:08.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:32:08.468 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:08.468 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:32:08.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:32:08.468 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:08.588 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:08.588 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:32:08.588 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:08.588 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) start.
17-03-17 18:32:08.968 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 18:32:08.968 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 18:32:08.968 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:08.968 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 18:32:08.978 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 18:32:08.978 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:08.978 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:08.978 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:08.978 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-17 18:32:08.988 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 18:32:08.998 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:32:08.998 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:32:08.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36562 150' command took 2 ms to send, 1640 ms to get response, and 1651 ms overall
17-03-17 18:32:08.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:32:08.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.166571255219672. ------
17-03-17 18:32:08.998 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:08.998 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17311 mm
17-03-17 18:32:08.998 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:32:09.748 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:32:09.748 -07 000000501 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:32:09.748 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:10.748 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:10.748 -07 000000482 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:32:10.748 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1740 ms to get response, and 1746 ms overall
17-03-17 18:32:10.748 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 18:32:10.748 -07 000000501 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:10.748 -07 000000501 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:32:10.748 -07 000000501 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:32:10.748 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:32:10.748 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 37815, sync = True, waitForSettling = False)
17-03-17 18:32:10.748 -07 000000482 INF: Z Motor: Moving to -0.173106 mm, started at -0.166571 mm, distance = -6.53 um
17-03-17 18:32:10.758 -07 000000482 INF: FPGA: Xmit ZDACW 37815\n [Z Motor]
17-03-17 18:32:10.768 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:32:11.748 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:32:11.748 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:32:11.748 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:32:11.748 -07 000000482 INF: FPGA: 'ZDACW 37815' command took 0 ms to send, 980 ms to get response, and 997 ms overall
17-03-17 18:32:11.748 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:32:11.748 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:11.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:32:11.748 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 970 ms to get response, and 998 ms overall
17-03-17 18:32:11.748 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 18:32:11.748 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.974486,
17-03-17 18:32:11.748 -07 000000512 INF: FPGA: Recv ZDACR 37815
17-03-17 18:32:11.758 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:32:11.758 -07 000000482 INF: Z Motor: MoveAbsStepped took 1007 ms (did NOT wait for settling yet))
17-03-17 18:32:11.788 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:11.788 -07 000000618 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:32:11.798 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:11.798 -07 000000501 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:11.798 -07 000000501 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 18:32:11.798 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1000 ms, distance = 0.843 mm, average velocity = 0.843 mm/sec
17-03-17 18:32:12.748 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:12.748 -07 000000475 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:32:12.758 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:12.758 -07 000000501 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:12.798 -07 000000501 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:32:12.798 -07 000000501 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:32:12.798 -07 000000501 INF: Y Motor: Moved to 73.1768 after 3050 ms (table move)
17-03-17 18:32:12.798 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173106 mm (DAC = 37815)
17-03-17 18:32:12.798 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:12.808 -07 000000424 INF: FPGA: Recv ZSGSRD 36239
17-03-17 18:32:12.808 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 18:32:12.808 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:12.808 -07 000000482 INF: FPGA: Recv ZSGSRD 36237
17-03-17 18:32:12.818 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:12.818 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:12.818 -07 000000478 INF: FPGA: Recv ZSGSRD 36235
17-03-17 18:32:12.828 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:12.828 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:12.828 -07 000000618 INF: FPGA: Recv ZSGSRD 36239
17-03-17 18:32:12.838 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:12.838 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:12.838 -07 000000424 INF: FPGA: Recv ZSGSRD 36237
17-03-17 18:32:12.848 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:12.848 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:12.848 -07 000000618 INF: FPGA: Recv ZSGSRD 36235
17-03-17 18:32:12.858 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:12.858 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:12.858 -07 000000482 INF: FPGA: Recv ZSGSRD 36237
17-03-17 18:32:12.868 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:12.868 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:12.868 -07 000000618 INF: FPGA: Recv ZSGSRD 36238
17-03-17 18:32:12.878 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:12.878 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:12.878 -07 000000424 INF: FPGA: Recv ZSGSRD 36233
17-03-17 18:32:12.888 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:12.888 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:12.888 -07 000000482 INF: FPGA: Recv ZSGSRD 36239
17-03-17 18:32:12.898 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:12.898 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:12.898 -07 000000618 INF: FPGA: Recv ZPIEZORD 32366
17-03-17 18:32:12.908 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:12.908 -07 000000012 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.770 V. Piezo Error = -8.6 V.
17-03-17 18:32:12.908 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36237 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36237 (-172.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36233 (-172.2 uncal um), Max = 36239 (-172.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:32:12.908 -07 000000012 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36237, posNoise = 2, negNoise = 4
17-03-17 18:32:12.908 -07 000000012 INF: Z Motor: After move to -0.173106, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:12.908 -07 000000012 INF: Z Motor: Settle wait time = 2054 ms, measure time = 104 ms (allowed 150 ms), total time = 2158 ms
17-03-17 18:32:12.908 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:32:12.958 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3955 ms
17-03-17 18:32:12.958 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:32:12.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:12.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:12.958 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:12.968 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:12.968 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:32:12.968 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:12.968 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:32:12.968 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:32:12.968 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:32:12.968 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:32:12.978 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:32:12.978 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:32:12.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:32:13.028 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:32:13.218 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:32:13.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:32:13.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:32:13.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2315455648, 0x0, 559484976) start.
17-03-17 18:32:13.258 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:32:13.268 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 18:32:13.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 286 ms overall
17-03-17 18:32:13.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2315455648, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 18:32:13.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:13.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:32:13.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:32:13.368 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:13.368 -07 000000424 INF: Autofocus start
17-03-17 18:32:13.368 -07 000000424 INF: MeasureProfile start
17-03-17 18:32:13.368 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:13.378 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:13.378 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:32:13.378 -07 000000424 INF: MeasureProfile done
17-03-17 18:32:13.378 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-17 18:32:13.378 -07 000000424 INF: Autofocus finished
17-03-17 18:32:13.578 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:32:13.578 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:32:13.578 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.173117527392127. ----------
17-03-17 18:32:13.578 -07 000000610 INF: Cycle	14	Tile	17	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:32:13.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36330, sync = True, waitForSettling = True)
17-03-17 18:32:13.588 -07 000000610 INF: Z Motor: Moving to -0.166308 mm, started at -0.173118 mm, distance = 6.81 um
17-03-17 18:32:13.588 -07 000000610 INF: FPGA: Xmit ZDACW 36330\n [Z Motor]
17-03-17 18:32:13.588 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:32:13.598 -07 000000610 INF: FPGA: 'ZDACW 36330' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:13.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:13.598 -07 000000012 INF: FPGA: Recv ZDACR 36330
17-03-17 18:32:13.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:13.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:32:13.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:13.758 -07 000000012 INF: FPGA: Recv ZSGSRD 35182
17-03-17 18:32:13.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:13.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:13.768 -07 000000618 INF: FPGA: Recv ZSGSRD 35182
17-03-17 18:32:13.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:13.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:13.778 -07 000000618 INF: FPGA: Recv ZSGSRD 35176
17-03-17 18:32:13.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:13.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:13.788 -07 000000501 INF: FPGA: Recv ZSGSRD 35178
17-03-17 18:32:13.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:13.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:13.798 -07 000000012 INF: FPGA: Recv ZSGSRD 35182
17-03-17 18:32:13.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:13.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:13.808 -07 000000608 INF: FPGA: Recv ZSGSRD 35180
17-03-17 18:32:13.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:13.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:13.818 -07 000000608 INF: FPGA: Recv ZSGSRD 35178
17-03-17 18:32:13.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:13.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:13.828 -07 000000482 INF: FPGA: Recv ZSGSRD 35176
17-03-17 18:32:13.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:13.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:13.838 -07 000000482 INF: FPGA: Recv ZSGSRD 35181
17-03-17 18:32:13.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:13.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:13.848 -07 000000012 INF: FPGA: Recv ZSGSRD 35181
17-03-17 18:32:13.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:13.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:13.858 -07 000000012 INF: FPGA: Recv ZPIEZORD 30891
17-03-17 18:32:13.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:13.868 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.544 V. Piezo Error = -9.4 V.
17-03-17 18:32:13.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35180 (-165.5 uncal um), Error = 0.8 uncal um, Median = 35180 (-165.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35176 (-165.4 uncal um), Max = 35182 (-165.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:32:13.868 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35180, posNoise = 2, negNoise = 4
17-03-17 18:32:13.868 -07 000000610 INF: Z Motor: After move to -0.166308, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:13.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:32:13.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:13.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:13.868 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:13.868 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:13.868 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:32:13.868 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:32:13.868 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:32:13.868 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:13.868 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:32:13.868 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:32:13.868 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:13.868 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:32:13.878 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:13.878 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:32:13.878 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:32:13.878 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:32:13.888 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:32:13.888 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:32:13.888 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:32:13.888 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:32:13.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36507 150\n [Camera]
17-03-17 18:32:14.088 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:32:14.488 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:32:14.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:32:14.488 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:14.488 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:14.488 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:32:14.488 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:32:14.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:32:14.488 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:14.488 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:14.488 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 18:32:14.678 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36507 778
17-03-17 18:32:14.828 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:32:14.888 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:32:14.888 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:32:14.888 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:14.888 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:14.888 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:32:14.888 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:32:14.888 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:32:14.888 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:14.898 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:14.898 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:32:15.018 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:32:15.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:32:15.018 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:15.018 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:15.018 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:32:15.018 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:32:15.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:32:15.018 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:15.018 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:15.018 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:32:15.208 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:32:15.208 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:32:15.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36507 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-17 18:32:15.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:32:15.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.166327135158285. ------
17-03-17 18:32:15.218 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:15.418 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:32:15.418 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:32:15.418 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:15.418 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:32:15.418 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:32:15.418 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:15.428 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:15.428 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:32:15.428 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:32:15.428 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:32:15.598 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17261 mm
17-03-17 18:32:15.598 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:32:15.598 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:15.598 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 376 ms to get response, and 382 ms overall
17-03-17 18:32:15.598 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:32:15.598 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:32:15.598 -07 000000012 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:32:15.608 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:16.448 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 37708, sync = True, waitForSettling = False)
17-03-17 18:32:16.448 -07 000000623 INF: Z Motor: Moving to -0.172616 mm, started at -0.166327 mm, distance = -6.29 um
17-03-17 18:32:16.448 -07 000000623 INF: FPGA: Xmit ZDACW 37708\n [Z Motor]
17-03-17 18:32:16.978 -07 000000415 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:32:16.978 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:32:16.978 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 18:32:16.978 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:32:16.978 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1370 ms to get response, and 1373 ms overall
17-03-17 18:32:16.978 -07 000000623 INF: FPGA: 'ZDACW 37708' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-17 18:32:16.978 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:16.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:32:16.978 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1360 ms to get response, and 1372 ms overall
17-03-17 18:32:16.978 -07 000000012 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:16.978 -07 000000012 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:32:16.978 -07 000000012 INF: Y Motor: Moving 1353 steps-32
17-03-17 18:32:16.978 -07 000000415 INF: FPGA: Recv ZDACR 37708
17-03-17 18:32:16.988 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:32:16.988 -07 000000623 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-17 18:32:16.988 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:32:17.288 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.018051,
17-03-17 18:32:17.358 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:32:17.358 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 18:32:17.388 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:17.388 -07 000000424 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:32:17.398 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:32:17.398 -07 000000012 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:17.398 -07 000000012 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:32:17.398 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.846 mm, average velocity = 2.191 mm/sec
17-03-17 18:32:18.348 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:18.348 -07 000000618 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:32:18.358 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:18.358 -07 000000012 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:18.368 -07 000000012 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:32:18.368 -07 000000012 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:32:18.368 -07 000000012 INF: Y Motor: Moved to 74.0088 after 2766 ms (table move)
17-03-17 18:32:18.368 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172616 mm (DAC = 37708)
17-03-17 18:32:18.368 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:18.378 -07 000000012 INF: FPGA: Recv ZSGSRD 36157
17-03-17 18:32:18.388 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:18.388 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:18.388 -07 000000593 INF: FPGA: Recv ZSGSRD 36154
17-03-17 18:32:18.398 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:18.398 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:18.398 -07 000000623 INF: FPGA: Recv ZSGSRD 36156
17-03-17 18:32:18.408 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:18.408 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:18.408 -07 000000593 INF: FPGA: Recv ZSGSRD 36166
17-03-17 18:32:18.418 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:18.418 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:18.418 -07 000000623 INF: FPGA: Recv ZSGSRD 36158
17-03-17 18:32:18.428 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:18.428 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:18.428 -07 000000593 INF: FPGA: Recv ZSGSRD 36166
17-03-17 18:32:18.438 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:18.438 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:18.438 -07 000000475 INF: FPGA: Recv ZSGSRD 36169
17-03-17 18:32:18.448 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:18.448 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:18.448 -07 000000424 INF: FPGA: Recv ZSGSRD 36160
17-03-17 18:32:18.458 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:18.458 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:18.458 -07 000000618 INF: FPGA: Recv ZSGSRD 36157
17-03-17 18:32:18.468 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:18.468 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:18.468 -07 000000415 INF: FPGA: Recv ZSGSRD 36151
17-03-17 18:32:18.478 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:18.478 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:18.478 -07 000000618 INF: FPGA: Recv ZPIEZORD 32226
17-03-17 18:32:18.488 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:18.488 -07 000000482 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.7 V.
17-03-17 18:32:18.488 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36159 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36158 (-171.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36151 (-171.7 uncal um), Max = 36169 (-171.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:32:18.488 -07 000000482 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36159, posNoise = 10, negNoise = 8
17-03-17 18:32:18.488 -07 000000482 INF: Z Motor: After move to -0.172616, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:18.488 -07 000000482 INF: Z Motor: Settle wait time = 1928 ms, measure time = 111 ms (allowed 150 ms), total time = 2039 ms
17-03-17 18:32:18.488 -07 000000482 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 18:32:18.528 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2928 ms
17-03-17 18:32:18.528 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:32:18.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:18.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:18.528 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:18.528 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:18.528 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:32:18.528 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:18.528 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:32:18.528 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:32:18.538 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:18.538 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:32:18.548 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:32:18.548 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:32:18.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:32:18.588 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:32:18.788 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:32:18.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:32:18.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:32:18.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:32:18.828 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:32:18.828 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:32:18.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:32:18.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:32:18.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:18.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:32:18.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:32:18.928 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:18.928 -07 000000593 INF: Autofocus start
17-03-17 18:32:18.928 -07 000000593 INF: MeasureProfile start
17-03-17 18:32:18.928 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:18.938 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:32:18.938 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:32:18.938 -07 000000593 INF: MeasureProfile done
17-03-17 18:32:18.938 -07 000000593 INF: X=48  Z correction [um]=0.1739867
17-03-17 18:32:18.938 -07 000000593 INF: Autofocus finished
17-03-17 18:32:19.138 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:32:19.138 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:32:19.138 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.172616438845069. ----------
17-03-17 18:32:19.138 -07 000000610 INF: Cycle	14	Tile	18	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:32:19.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36258, sync = True, waitForSettling = True)
17-03-17 18:32:19.148 -07 000000610 INF: Z Motor: Moving to -0.165978 mm, started at -0.172616 mm, distance = 6.64 um
17-03-17 18:32:19.148 -07 000000610 INF: FPGA: Xmit ZDACW 36258\n [Z Motor]
17-03-17 18:32:19.148 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 18:32:19.158 -07 000000610 INF: FPGA: 'ZDACW 36258' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:32:19.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:19.158 -07 000000475 INF: FPGA: Recv ZDACR 36258
17-03-17 18:32:19.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:19.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:32:19.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:19.318 -07 000000482 INF: FPGA: Recv ZSGSRD 35127
17-03-17 18:32:19.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:19.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:19.328 -07 000000475 INF: FPGA: Recv ZSGSRD 35129
17-03-17 18:32:19.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:19.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:19.338 -07 000000482 INF: FPGA: Recv ZSGSRD 35126
17-03-17 18:32:19.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:19.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:19.348 -07 000000475 INF: FPGA: Recv ZSGSRD 35127
17-03-17 18:32:19.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:19.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:19.358 -07 000000618 INF: FPGA: Recv ZSGSRD 35128
17-03-17 18:32:19.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:19.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:19.368 -07 000000424 INF: FPGA: Recv ZSGSRD 35132
17-03-17 18:32:19.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:19.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:19.378 -07 000000475 INF: FPGA: Recv ZSGSRD 35122
17-03-17 18:32:19.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:19.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:19.388 -07 000000618 INF: FPGA: Recv ZSGSRD 35130
17-03-17 18:32:19.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:19.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:19.398 -07 000000475 INF: FPGA: Recv ZSGSRD 35130
17-03-17 18:32:19.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:19.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:19.408 -07 000000618 INF: FPGA: Recv ZSGSRD 35123
17-03-17 18:32:19.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:19.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:19.418 -07 000000623 INF: FPGA: Recv ZPIEZORD 30864
17-03-17 18:32:19.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 63 ms to get response, and 73 ms overall
17-03-17 18:32:19.518 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.533 V. Piezo Error = -9.4 V.
17-03-17 18:32:19.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35127 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35128 (-165.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35122 (-165.1 uncal um), Max = 35132 (-165.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:32:19.518 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35127, posNoise = 5, negNoise = 5
17-03-17 18:32:19.518 -07 000000610 INF: Z Motor: After move to -0.165978, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:19.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 375 ms)
17-03-17 18:32:19.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:19.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:19.528 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:19.528 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:19.528 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:32:19.528 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:19.528 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:32:19.528 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:32:19.528 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:32:19.528 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:32:19.528 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:32:19.528 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:32:19.528 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:32:19.528 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:32:19.528 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:32:19.528 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:32:19.538 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:32:19.538 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:32:19.538 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:32:19.538 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 18:32:19.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36435 150\n [Camera]
17-03-17 18:32:19.738 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:32:20.138 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:32:20.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:32:20.138 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:20.138 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:20.138 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1053691952, 0x0, 391868352) start.
17-03-17 18:32:20.138 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:32:20.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:32:20.138 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:20.138 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:20.138 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1089114216, 0x0, 418435064) start.
17-03-17 18:32:20.328 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36435 778
17-03-17 18:32:20.478 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:32:20.518 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1089114216, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 18:32:20.518 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 18:32:20.518 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:20.518 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:20.528 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1053691952, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:32:20.528 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:32:20.528 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:20.528 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:32:20.528 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 18:32:20.528 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:32:20.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:32:20.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:32:20.668 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:20.668 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:20.668 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1124536480, 0x0, 391868352) start.
17-03-17 18:32:20.668 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:32:20.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:32:20.668 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:20.668 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:20.668 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:32:20.858 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:32:20.858 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:32:20.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36435 150' command took 2 ms to send, 1306 ms to get response, and 1319 ms overall
17-03-17 18:32:20.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 18:32:20.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.165986651914772. ------
17-03-17 18:32:20.868 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17235 mm
17-03-17 18:32:20.868 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:32:20.868 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:20.868 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:32:20.868 -07 000000618 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:32:20.878 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:21.068 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1124536480, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 18:32:21.068 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:32:21.068 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:21.068 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:32:21.068 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:32:21.068 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:21.078 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:21.078 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:32:21.078 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:32:21.078 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:32:21.148 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 37650, sync = True, waitForSettling = False)
17-03-17 18:32:21.148 -07 000000475 INF: Z Motor: Moving to -0.172351 mm, started at -0.165987 mm, distance = -6.36 um
17-03-17 18:32:21.148 -07 000000475 INF: FPGA: Xmit ZDACW 37650\n [Z Motor]
17-03-17 18:32:21.158 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:21.158 -07 000000623 INF: FPGA: Recv YRDPOS 151571
17-03-17 18:32:21.158 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 284 ms to get response, and 292 ms overall
17-03-17 18:32:21.158 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 274 ms to get response, and 289 ms overall
17-03-17 18:32:21.158 -07 000000618 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:21.158 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:32:21.158 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:32:21.158 -07 000000475 INF: FPGA: 'ZDACW 37650' command took 0 ms to send, 5 ms to get response, and 5 ms overall
17-03-17 18:32:21.158 -07 000000618 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:32:21.158 -07 000000618 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:32:21.168 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:21.168 -07 000000623 INF: FPGA: Recv ZDACR 37650
17-03-17 18:32:21.178 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:32:21.178 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 18:32:21.178 -07 000000475 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 18:32:21.358 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:32:21.358 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-17 18:32:21.548 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 18:32:21.548 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-17 18:32:21.568 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:21.578 -07 000000475 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:32:21.578 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:32:21.578 -07 000000618 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:21.578 -07 000000618 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:32:21.578 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.844 mm, average velocity = 2.169 mm/sec
17-03-17 18:32:21.598 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:32:21.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:32:22.528 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:22.528 -07 000000482 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:32:22.538 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:22.538 -07 000000618 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:22.548 -07 000000618 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:32:22.548 -07 000000618 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:32:22.548 -07 000000618 INF: Y Motor: Moved to 74.8325 after 1681 ms (table move)
17-03-17 18:32:22.548 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172351 mm (DAC = 37650)
17-03-17 18:32:22.548 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:22.558 -07 000000429 INF: FPGA: Recv ZSGSRD 36115
17-03-17 18:32:22.558 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 18:32:22.558 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:22.558 -07 000000012 INF: FPGA: Recv ZSGSRD 36120
17-03-17 18:32:22.568 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:32:22.568 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:22.568 -07 000000623 INF: FPGA: Recv ZSGSRD 36125
17-03-17 18:32:22.578 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:22.578 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:22.578 -07 000000475 INF: FPGA: Recv ZSGSRD 36118
17-03-17 18:32:22.588 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:22.588 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:22.588 -07 000000623 INF: FPGA: Recv ZSGSRD 36108
17-03-17 18:32:22.598 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:22.598 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:22.598 -07 000000415 INF: FPGA: Recv ZSGSRD 36118
17-03-17 18:32:22.608 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:22.608 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:22.608 -07 000000424 INF: FPGA: Recv ZSGSRD 36121
17-03-17 18:32:22.618 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:22.618 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:22.618 -07 000000429 INF: FPGA: Recv ZSGSRD 36124
17-03-17 18:32:22.628 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:22.628 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:22.628 -07 000000512 INF: FPGA: Recv ZSGSRD 36118
17-03-17 18:32:22.638 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:22.648 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.049392,
17-03-17 18:32:22.658 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:22.658 -07 000000512 INF: FPGA: Recv ZSGSRD 36116
17-03-17 18:32:22.668 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:32:22.688 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:22.688 -07 000000623 INF: FPGA: Recv ZPIEZORD 32185
17-03-17 18:32:22.698 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:32:22.698 -07 000000593 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.745 V. Piezo Error = -8.7 V.
17-03-17 18:32:22.698 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36118 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36118 (-171.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36108 (-171.4 uncal um), Max = 36125 (-171.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:32:22.698 -07 000000593 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36118, posNoise = 7, negNoise = 10
17-03-17 18:32:22.698 -07 000000593 INF: Z Motor: After move to -0.172351, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:22.698 -07 000000593 INF: Z Motor: Settle wait time = 1399 ms, measure time = 141 ms (allowed 150 ms), total time = 1540 ms
17-03-17 18:32:22.698 -07 000000593 INF: Z Motor: Waiting extra 9 ms after reading position to reach expected total of 150 ms
17-03-17 18:32:22.708 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1837 ms
17-03-17 18:32:22.708 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:32:22.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:22.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:22.708 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:22.708 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:22.708 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:32:22.708 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:22.708 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:32:22.708 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:32:22.718 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:22.718 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:32:22.728 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:32:22.728 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:32:22.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:32:22.778 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:32:22.978 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:32:22.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:32:22.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:32:22.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 18:32:23.018 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:32:23.018 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 18:32:23.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:32:23.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 18:32:23.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:23.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:32:23.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 18:32:23.218 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:23.218 -07 000000482 INF: Autofocus start
17-03-17 18:32:23.218 -07 000000482 INF: MeasureProfile start
17-03-17 18:32:23.218 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:23.228 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:32:23.228 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:32:23.228 -07 000000482 INF: MeasureProfile done
17-03-17 18:32:23.228 -07 000000482 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 18:32:23.228 -07 000000482 INF: Autofocus finished
17-03-17 18:32:23.428 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:32:23.428 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:32:23.428 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172353046147257. ----------
17-03-17 18:32:23.428 -07 000000610 INF: Cycle	14	Tile	19	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:32:23.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36129, sync = True, waitForSettling = True)
17-03-17 18:32:23.438 -07 000000610 INF: Z Motor: Moving to -0.165388 mm, started at -0.172353 mm, distance = 6.97 um
17-03-17 18:32:23.438 -07 000000610 INF: FPGA: Xmit ZDACW 36129\n [Z Motor]
17-03-17 18:32:23.438 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:32:23.448 -07 000000610 INF: FPGA: 'ZDACW 36129' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:32:23.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:23.448 -07 000000618 INF: FPGA: Recv ZDACR 36129
17-03-17 18:32:23.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:23.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:32:23.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:23.608 -07 000000501 INF: FPGA: Recv ZSGSRD 35036
17-03-17 18:32:23.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:23.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:23.618 -07 000000608 INF: FPGA: Recv ZSGSRD 35038
17-03-17 18:32:23.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:23.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:23.628 -07 000000475 INF: FPGA: Recv ZSGSRD 35036
17-03-17 18:32:23.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:23.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:23.638 -07 000000623 INF: FPGA: Recv ZSGSRD 35034
17-03-17 18:32:23.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:23.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:23.648 -07 000000415 INF: FPGA: Recv ZSGSRD 35033
17-03-17 18:32:23.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:23.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:23.658 -07 000000012 INF: FPGA: Recv ZSGSRD 35037
17-03-17 18:32:23.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:23.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:23.668 -07 000000608 INF: FPGA: Recv ZSGSRD 35039
17-03-17 18:32:23.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:23.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:23.678 -07 000000482 INF: FPGA: Recv ZSGSRD 35035
17-03-17 18:32:23.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:23.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:23.688 -07 000000482 INF: FPGA: Recv ZSGSRD 35036
17-03-17 18:32:23.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:23.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:23.698 -07 000000593 INF: FPGA: Recv ZSGSRD 35033
17-03-17 18:32:23.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:23.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:23.708 -07 000000593 INF: FPGA: Recv ZPIEZORD 30741
17-03-17 18:32:23.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:23.718 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.513 V. Piezo Error = -9.5 V.
17-03-17 18:32:23.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35036 (-164.5 uncal um), Error = 0.8 uncal um, Median = 35036 (-164.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35033 (-164.5 uncal um), Max = 35039 (-164.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:32:23.718 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35036, posNoise = 3, negNoise = 3
17-03-17 18:32:23.718 -07 000000610 INF: Z Motor: After move to -0.165388, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:23.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:32:23.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:23.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:23.718 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:23.718 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:23.718 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:32:23.718 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:23.718 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:32:23.718 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:32:23.718 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:23.718 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:32:23.718 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:32:23.718 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:32:23.728 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:23.728 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:32:23.728 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:32:23.728 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:32:23.738 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:32:23.738 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:32:23.738 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:32:23.738 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:32:23.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 36306 150\n [Camera]
17-03-17 18:32:23.938 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:32:24.338 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:32:24.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:32:24.338 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:24.338 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:24.338 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:32:24.338 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:32:24.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:32:24.338 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:24.338 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:24.338 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 18:32:24.528 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36306 778
17-03-17 18:32:24.678 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:32:24.738 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 18:32:24.738 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:32:24.738 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:24.738 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:32:24.738 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:32:24.738 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:24.738 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:24.738 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:32:24.738 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:24.748 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:32:24.868 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:32:24.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:32:24.868 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:24.988 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:32:24.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:32:24.988 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:24.988 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:24.988 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 18:32:24.988 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:24.988 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:32:25.058 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1311
17-03-17 18:32:25.058 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:32:25.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 36306 150' command took 2 ms to send, 1308 ms to get response, and 1318 ms overall
17-03-17 18:32:25.368 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:32:25.368 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:32:25.368 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:25.378 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:25.378 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:32:25.378 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:32:25.378 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:25.378 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:32:25.388 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:25.388 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 18:32:25.388 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:32:25.428 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 18:32:25.428 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:32:25.468 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:32:25.468 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 18:32:25.478 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 18:32:25.478 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 18:32:25.488 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:25.488 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 18:32:25.988 -07 000000482 INF: FPGA: Recv EMIN
17-03-17 18:32:25.988 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 18:32:25.988 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 18:32:25.988 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 18:32:25.998 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:25.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:32:25.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165402048609872. ------
17-03-17 18:32:25.998 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14014 mm
17-03-17 18:32:25.998 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:32:25.998 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:26.008 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 18:32:26.008 -07 000000012 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 18:32:26.008 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:26.008 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30613, sync = True, waitForSettling = False)
17-03-17 18:32:26.008 -07 000000482 INF: Z Motor: Moving to -0.140137 mm, started at -0.165402 mm, distance = 25.26 um
17-03-17 18:32:26.008 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:26.008 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:32:26.008 -07 000000593 INF: FPGA: Recv YRDPOS 153259
17-03-17 18:32:26.018 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:26.018 -07 000000012 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:26.018 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:32:26.018 -07 000000012 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 18:32:26.018 -07 000000012 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 18:32:26.028 -07 000000482 INF: FPGA: Xmit ZDACW 30613\n [Z Motor]
17-03-17 18:32:26.028 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:32:26.038 -07 000000482 INF: FPGA: 'ZDACW 30613' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:32:26.038 -07 000000012 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 18:32:26.048 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:26.048 -07 000000593 INF: FPGA: Recv ZDACR 30613
17-03-17 18:32:26.058 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:32:26.058 -07 000000482 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 18:32:26.218 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:32:26.218 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 18:32:26.598 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:32:26.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:32:27.658 -07 000000593 INF: FPGA: Recv YMVTO 122702 23904
17-03-17 18:32:27.658 -07 000000012 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1646 ms overall
17-03-17 18:32:27.658 -07 000000012 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 18:32:27.658 -07 000000012 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 18:32:27.658 -07 000000012 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1646 ms, distance = 14.920 mm, average velocity = 9.064 mm/sec
17-03-17 18:32:28.038 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.99219,
17-03-17 18:32:30.508 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:30.508 -07 000000501 INF: FPGA: Recv YRDPOS 122700
17-03-17 18:32:30.518 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:30.518 -07 000000012 INF: Y Motor: Encoder = 122700 = motor step 95859.4 = 59.9121 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:30.538 -07 000000012 INF: Y Motor: After move to 59.912609, error = -0.000500, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:32:30.538 -07 000000012 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = -2 counts (-0.001 mm)
17-03-17 18:32:30.538 -07 000000012 INF: Y Motor: Moved to 59.9121 after 4536 ms
17-03-17 18:32:30.548 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140137 mm (DAC = 30613)
17-03-17 18:32:30.548 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:30.548 -07 000000501 INF: FPGA: Recv ZSGSRD 31100
17-03-17 18:32:30.558 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:30.558 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:30.558 -07 000000593 INF: FPGA: Recv ZSGSRD 31103
17-03-17 18:32:30.568 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:30.568 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:30.568 -07 000000424 INF: FPGA: Recv ZSGSRD 31103
17-03-17 18:32:30.578 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:30.578 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:30.578 -07 000000593 INF: FPGA: Recv ZSGSRD 31109
17-03-17 18:32:30.588 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:30.588 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:30.588 -07 000000501 INF: FPGA: Recv ZSGSRD 31107
17-03-17 18:32:30.598 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:30.598 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:30.598 -07 000000482 INF: FPGA: Recv ZSGSRD 31107
17-03-17 18:32:30.608 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:30.608 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:30.608 -07 000000424 INF: FPGA: Recv ZSGSRD 31109
17-03-17 18:32:30.618 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:30.618 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:30.618 -07 000000482 INF: FPGA: Recv ZSGSRD 31106
17-03-17 18:32:30.628 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:30.628 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:30.628 -07 000000512 INF: FPGA: Recv ZSGSRD 31104
17-03-17 18:32:30.638 -07 000000415 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:30.638 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:30.638 -07 000000501 INF: FPGA: Recv ZSGSRD 31100
17-03-17 18:32:30.648 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:30.648 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:30.648 -07 000000424 INF: FPGA: Recv ZPIEZORD 26666
17-03-17 18:32:30.658 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:30.658 -07 000000415 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.671 V. Piezo Error = -9.7 V.
17-03-17 18:32:30.658 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31105 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31105 (-139.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31100 (-139.3 uncal um), Max = 31109 (-139.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:32:30.658 -07 000000415 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31105, posNoise = 4, negNoise = 5
17-03-17 18:32:30.658 -07 000000415 INF: Z Motor: After move to -0.140137, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:30.658 -07 000000415 INF: Z Motor: Settle wait time = 4539 ms, measure time = 110 ms (allowed 150 ms), total time = 4649 ms
17-03-17 18:32:30.658 -07 000000415 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:32:30.698 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4691 ms
17-03-17 18:32:30.698 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:32:30.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:30.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:30.698 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:30.698 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:30.698 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:32:30.698 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:30.698 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:30.698 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 18:32:30.728 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 18:32:30.728 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:32:30.728 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 18:32:30.728 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:32:30.738 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:32:30.738 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 18:32:30.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:32:30.788 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:32:30.988 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:32:30.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:32:30.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:32:30.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 18:32:31.028 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:32:31.028 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:32:31.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:32:31.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:32:31.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:31.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:32:31.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:32:31.128 -07 000000482 INF: Image SNR check: start
17-03-17 18:32:31.128 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:31.128 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:31.138 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:31.138 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:32:31.138 -07 000000482 INF: Image SNR check: pass  [peak (Max-Min)=73.73]
17-03-17 18:32:31.138 -07 000000482 INF: Autofocus start
17-03-17 18:32:31.138 -07 000000482 INF: MeasureProfile start
17-03-17 18:32:31.158 -07 000000482 INF: MeasureProfile done
17-03-17 18:32:31.158 -07 000000482 INF: X=5  Z correction [um]=0.0001036296
17-03-17 18:32:31.158 -07 000000482 INF: Autofocus finished
17-03-17 18:32:31.338 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:32:31.338 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:32:31.338 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.912109375, Z-position -0.14014847068061. ----------
17-03-17 18:32:31.338 -07 000000610 INF: Cycle	14	Tile	1	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:32:31.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29126, sync = True, waitForSettling = True)
17-03-17 18:32:31.348 -07 000000610 INF: Z Motor: Moving to -0.133330 mm, started at -0.140148 mm, distance = 6.82 um
17-03-17 18:32:31.348 -07 000000610 INF: FPGA: Xmit ZDACW 29126\n [Z Motor]
17-03-17 18:32:31.348 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:32:31.358 -07 000000610 INF: FPGA: 'ZDACW 29126' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:31.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:31.358 -07 000000415 INF: FPGA: Recv ZDACR 29126
17-03-17 18:32:31.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:31.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:32:31.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:31.518 -07 000000415 INF: FPGA: Recv ZSGSRD 30046
17-03-17 18:32:31.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:31.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:31.528 -07 000000012 INF: FPGA: Recv ZSGSRD 30042
17-03-17 18:32:31.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:31.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:31.538 -07 000000012 INF: FPGA: Recv ZSGSRD 30047
17-03-17 18:32:31.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:31.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:31.548 -07 000000608 INF: FPGA: Recv ZSGSRD 30044
17-03-17 18:32:31.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:31.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:31.558 -07 000000593 INF: FPGA: Recv ZSGSRD 30041
17-03-17 18:32:31.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:31.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:31.568 -07 000000012 INF: FPGA: Recv ZSGSRD 30046
17-03-17 18:32:31.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:31.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:31.578 -07 000000512 INF: FPGA: Recv ZSGSRD 30048
17-03-17 18:32:31.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:31.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:31.588 -07 000000608 INF: FPGA: Recv ZSGSRD 30047
17-03-17 18:32:31.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:31.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:31.598 -07 000000512 INF: FPGA: Recv ZSGSRD 30045
17-03-17 18:32:31.598 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:32:31.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:32:31.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:31.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:31.608 -07 000000623 INF: FPGA: Recv ZSGSRD 30043
17-03-17 18:32:31.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:31.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:31.618 -07 000000608 INF: FPGA: Recv ZPIEZORD 25504
17-03-17 18:32:31.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:31.628 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.444 V. Piezo Error = -10.0 V.
17-03-17 18:32:31.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30045 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30046 (-132.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30041 (-132.5 uncal um), Max = 30048 (-132.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:32:31.628 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30045, posNoise = 3, negNoise = 4
17-03-17 18:32:31.628 -07 000000610 INF: Z Motor: After move to -0.133330, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:31.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:32:31.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:31.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:31.628 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:31.628 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:32:31.628 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:31.628 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:31.628 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:32:31.628 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 18:32:31.628 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:32:31.628 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:32:31.628 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 18:32:31.628 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 18:32:31.638 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:31.638 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:32:31.648 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:32:31.648 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:32:31.658 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 18:32:31.658 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:32:31.658 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:32:31.658 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:32:31.668 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:32:31.668 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 41 ms.
17-03-17 18:32:31.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29303 150\n [Camera]
17-03-17 18:32:31.868 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:32:32.268 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:32:32.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:32:32.268 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:32.268 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:32:32.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:32:32.268 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:32.268 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:32.268 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:32:32.278 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:32.278 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1053691952, 0x0, 418435064) start.
17-03-17 18:32:32.458 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29303 778
17-03-17 18:32:32.608 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:32:32.668 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:32:32.668 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:32:32.668 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:32.668 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1053691952, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:32:32.668 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:32:32.668 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:32.668 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:32.668 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:32:32.668 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:32.678 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:32:32.828 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:32:32.828 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:32:32.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:32:32.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:32:32.828 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:32.828 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:32.838 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:32.838 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:32:32.838 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:32.838 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:32:32.988 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:32:32.988 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:32:32.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29303 150' command took 2 ms to send, 1305 ms to get response, and 1317 ms overall
17-03-17 18:32:32.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:32:32.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.912109375, Z-Position -0.133338805810343. ------
17-03-17 18:32:32.998 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:32.998 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13976 mm
17-03-17 18:32:32.998 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:32:32.998 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 18:32:32.998 -07 000000012 INF: Y Motor: Moving to 60.7426 mm, started at 59.9121 mm, delta = 0.8305 mm
17-03-17 18:32:32.998 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30530, sync = True, waitForSettling = False)
17-03-17 18:32:32.998 -07 000000512 INF: Z Motor: Moving to -0.139757 mm, started at -0.133339 mm, distance = -6.42 um
17-03-17 18:32:33.008 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:33.018 -07 000000512 INF: FPGA: Xmit ZDACW 30530\n [Z Motor]
17-03-17 18:32:33.238 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:32:33.238 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:32:33.238 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:33.238 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:32:33.238 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:32:33.238 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:33.248 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:33.248 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:33.248 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 18:32:33.248 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 18:32:33.358 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:33.358 -07 000000608 INF: FPGA: Recv YRDPOS 122700
17-03-17 18:32:33.358 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:32:33.358 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 342 ms to get response, and 357 ms overall
17-03-17 18:32:33.358 -07 000000012 INF: Y Motor: Encoder = 122700 = motor step 95859.4 = 59.9121 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:33.358 -07 000000512 INF: FPGA: 'ZDACW 30530' command took 0 ms to send, 332 ms to get response, and 356 ms overall
17-03-17 18:32:33.358 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:33.358 -07 000000012 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:32:33.358 -07 000000012 INF: Y Motor: Moving 1329 steps1
17-03-17 18:32:33.358 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 352 ms to get response, and 360 ms overall
17-03-17 18:32:33.358 -07 000000608 INF: FPGA: Recv ZDACR 30530
17-03-17 18:32:33.368 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:33.368 -07 000000512 INF: Z Motor: MoveAbsStepped took 364 ms (did NOT wait for settling yet))
17-03-17 18:32:33.368 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:32:33.378 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:32:33.578 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:32:33.578 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-17 18:32:33.668 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.000345,
17-03-17 18:32:33.738 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 18:32:33.738 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:32:33.768 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:33.768 -07 000000448 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:32:33.778 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:32:33.778 -07 000000012 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:33.778 -07 000000012 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 18:32:33.778 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.830 mm, average velocity = 2.163 mm/sec
17-03-17 18:32:34.728 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:34.728 -07 000000415 INF: FPGA: Recv YRDPOS 124382
17-03-17 18:32:34.738 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:34.738 -07 000000012 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:34.758 -07 000000012 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:32:34.758 -07 000000012 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:32:34.758 -07 000000012 INF: Y Motor: Moved to 60.7334 after 1755 ms (table move)
17-03-17 18:32:34.758 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139757 mm (DAC = 30530)
17-03-17 18:32:34.758 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:34.758 -07 000000618 INF: FPGA: Recv ZSGSRD 31049
17-03-17 18:32:34.768 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:34.768 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:34.768 -07 000000623 INF: FPGA: Recv ZSGSRD 31033
17-03-17 18:32:34.778 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:34.778 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:34.778 -07 000000608 INF: FPGA: Recv ZSGSRD 31046
17-03-17 18:32:34.788 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:34.788 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:34.788 -07 000000012 INF: FPGA: Recv ZSGSRD 31047
17-03-17 18:32:34.798 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:34.798 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:34.798 -07 000000512 INF: FPGA: Recv ZSGSRD 31052
17-03-17 18:32:34.808 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:34.808 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:34.808 -07 000000623 INF: FPGA: Recv ZSGSRD 31055
17-03-17 18:32:34.818 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:34.818 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:34.818 -07 000000512 INF: FPGA: Recv ZSGSRD 31042
17-03-17 18:32:34.828 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:34.828 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:34.828 -07 000000623 INF: FPGA: Recv ZSGSRD 31041
17-03-17 18:32:34.838 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:34.838 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:34.838 -07 000000608 INF: FPGA: Recv ZSGSRD 31036
17-03-17 18:32:34.848 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:34.848 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:34.848 -07 000000618 INF: FPGA: Recv ZSGSRD 31044
17-03-17 18:32:34.858 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:34.858 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:34.858 -07 000000415 INF: FPGA: Recv ZPIEZORD 26843
17-03-17 18:32:34.868 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:34.868 -07 000000593 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.659 V. Piezo Error = -9.2 V.
17-03-17 18:32:34.868 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.8 um, Read 10 ADC samples: Avg = 31044 (-139.0 uncal um), Error = 0.8 uncal um, Median = 31045 (-139.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 31033 (-138.9 uncal um), Max = 31055 (-139.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:32:34.868 -07 000000593 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31044, posNoise = 11, negNoise = 11
17-03-17 18:32:34.868 -07 000000593 INF: Z Motor: After move to -0.139757, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:34.868 -07 000000593 INF: Z Motor: Settle wait time = 1757 ms, measure time = 107 ms (allowed 150 ms), total time = 1864 ms
17-03-17 18:32:34.868 -07 000000593 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 18:32:34.918 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1917 ms
17-03-17 18:32:34.918 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:32:34.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:34.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:34.918 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:34.918 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:32:34.918 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:34.918 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:34.918 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:34.918 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:32:34.928 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:34.928 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:32:34.938 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:32:34.938 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 18:32:34.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:32:34.978 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:32:35.178 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:32:35.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:32:35.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:32:35.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 18:32:35.218 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:32:35.218 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 18:32:35.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:32:35.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:32:35.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:35.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:32:35.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 18:32:35.318 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:35.318 -07 000000448 INF: Autofocus start
17-03-17 18:32:35.318 -07 000000448 INF: MeasureProfile start
17-03-17 18:32:35.318 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:35.328 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:35.328 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:32:35.328 -07 000000448 INF: MeasureProfile done
17-03-17 18:32:35.328 -07 000000448 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:32:35.328 -07 000000448 INF: Autofocus finished
17-03-17 18:32:35.528 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:32:35.528 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:32:35.528 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.139756593739962. ----------
17-03-17 18:32:35.528 -07 000000610 INF: Cycle	14	Tile	2	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:32:35.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29055, sync = True, waitForSettling = True)
17-03-17 18:32:35.538 -07 000000610 INF: Z Motor: Moving to -0.133005 mm, started at -0.139757 mm, distance = 6.75 um
17-03-17 18:32:35.538 -07 000000610 INF: FPGA: Xmit ZDACW 29055\n [Z Motor]
17-03-17 18:32:35.538 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 18:32:35.548 -07 000000610 INF: FPGA: 'ZDACW 29055' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:35.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:35.548 -07 000000623 INF: FPGA: Recv ZDACR 29055
17-03-17 18:32:35.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:32:35.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:32:35.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:35.708 -07 000000415 INF: FPGA: Recv ZSGSRD 29994
17-03-17 18:32:35.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:35.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:35.718 -07 000000478 INF: FPGA: Recv ZSGSRD 29994
17-03-17 18:32:35.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:35.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:35.728 -07 000000623 INF: FPGA: Recv ZSGSRD 29998
17-03-17 18:32:35.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:35.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:35.738 -07 000000618 INF: FPGA: Recv ZSGSRD 30000
17-03-17 18:32:35.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:35.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:35.748 -07 000000623 INF: FPGA: Recv ZSGSRD 29993
17-03-17 18:32:35.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:35.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:35.758 -07 000000618 INF: FPGA: Recv ZSGSRD 29995
17-03-17 18:32:35.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:35.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:35.768 -07 000000478 INF: FPGA: Recv ZSGSRD 29987
17-03-17 18:32:35.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:35.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:35.778 -07 000000608 INF: FPGA: Recv ZSGSRD 29995
17-03-17 18:32:35.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:35.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:35.788 -07 000000478 INF: FPGA: Recv ZSGSRD 29996
17-03-17 18:32:35.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:35.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:35.798 -07 000000512 INF: FPGA: Recv ZSGSRD 29998
17-03-17 18:32:35.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:35.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:35.808 -07 000000512 INF: FPGA: Recv ZPIEZORD 25545
17-03-17 18:32:35.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:35.818 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.434 V. Piezo Error = -9.8 V.
17-03-17 18:32:35.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29995 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29995 (-132.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29987 (-132.2 uncal um), Max = 30000 (-132.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:32:35.818 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29995, posNoise = 5, negNoise = 8
17-03-17 18:32:35.818 -07 000000610 INF: Z Motor: After move to -0.133005, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:35.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:32:35.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:35.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:35.818 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:35.818 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:32:35.818 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:32:35.818 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:32:35.818 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:35.818 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:32:35.818 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:35.818 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:35.818 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:32:35.818 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:32:35.828 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:32:35.828 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:32:35.828 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:32:35.828 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:32:35.838 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:32:35.838 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:32:35.838 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 18:32:35.838 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:32:35.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29231 150\n [Camera]
17-03-17 18:32:36.038 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:32:36.428 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:32:36.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:32:36.428 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:36.428 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:36.428 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:32:36.438 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:32:36.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:32:36.438 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:36.438 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:36.438 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 18:32:36.598 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:32:36.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:32:36.628 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29231 778
17-03-17 18:32:36.768 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:32:36.808 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:32:36.808 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:32:36.808 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:36.808 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:32:36.808 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:32:36.808 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:36.818 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:36.818 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 18:32:36.818 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:36.828 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:32:36.968 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1119
17-03-17 18:32:36.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1119
17-03-17 18:32:37.078 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1119
17-03-17 18:32:37.078 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:37.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1119
17-03-17 18:32:37.078 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:37.088 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:37.088 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:32:37.088 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:37.088 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:32:37.158 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:32:37.158 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:32:37.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29231 150' command took 2 ms to send, 1311 ms to get response, and 1316 ms overall
17-03-17 18:32:37.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:32:37.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.133017595203255. ------
17-03-17 18:32:37.158 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:37.158 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13971 mm
17-03-17 18:32:37.158 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:32:37.158 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:37.168 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:32:37.168 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30519, sync = True, waitForSettling = False)
17-03-17 18:32:37.168 -07 000000618 INF: Z Motor: Moving to -0.139707 mm, started at -0.133018 mm, distance = -6.69 um
17-03-17 18:32:37.168 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:32:37.168 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 18:32:37.168 -07 000000478 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 18:32:37.178 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:37.178 -07 000000012 INF: FPGA: Recv YRDPOS 124383
17-03-17 18:32:37.188 -07 000000618 INF: FPGA: Xmit ZDACW 30519\n [Z Motor]
17-03-17 18:32:37.188 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 18:32:37.188 -07 000000478 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:37.188 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 18:32:37.188 -07 000000478 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:32:37.188 -07 000000478 INF: Y Motor: Moving 1342 steps-19
17-03-17 18:32:37.198 -07 000000618 INF: FPGA: 'ZDACW 30519' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:32:37.198 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:37.198 -07 000000475 INF: FPGA: Recv ZDACR 30519
17-03-17 18:32:37.208 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:37.208 -07 000000618 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:32:37.208 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:32:37.368 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:32:37.368 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 18:32:37.478 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 18:32:37.478 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:32:37.478 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:37.478 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:32:37.478 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:32:37.478 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:37.488 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:37.488 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:32:37.488 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:37.498 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:32:37.578 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:32:37.578 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 18:32:37.618 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:37.618 -07 000000618 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:32:37.628 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:32:37.628 -07 000000478 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:37.628 -07 000000478 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 18:32:37.628 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.141 mm/sec
17-03-17 18:32:38.578 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:38.578 -07 000000512 INF: FPGA: Recv YRDPOS 126084
17-03-17 18:32:38.588 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:38.588 -07 000000478 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:38.598 -07 000000478 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:32:38.598 -07 000000478 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:32:38.598 -07 000000478 INF: Y Motor: Moved to 61.5645 after 1438 ms (table move)
17-03-17 18:32:38.608 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139707 mm (DAC = 30519)
17-03-17 18:32:38.608 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:38.608 -07 000000618 INF: FPGA: Recv ZSGSRD 31045
17-03-17 18:32:38.618 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:38.618 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:38.618 -07 000000478 INF: FPGA: Recv ZSGSRD 31037
17-03-17 18:32:38.628 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:32:38.628 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:38.628 -07 000000618 INF: FPGA: Recv ZSGSRD 31042
17-03-17 18:32:38.638 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:38.638 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:38.638 -07 000000478 INF: FPGA: Recv ZSGSRD 31028
17-03-17 18:32:38.648 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:38.648 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:38.648 -07 000000608 INF: FPGA: Recv ZSGSRD 31042
17-03-17 18:32:38.658 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:38.658 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:38.658 -07 000000475 INF: FPGA: Recv ZSGSRD 31042
17-03-17 18:32:38.668 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:38.668 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:38.668 -07 000000608 INF: FPGA: Recv ZSGSRD 31031
17-03-17 18:32:38.678 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:38.678 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:38.678 -07 000000618 INF: FPGA: Recv ZSGSRD 31035
17-03-17 18:32:38.688 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:38.688 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:38.688 -07 000000478 INF: FPGA: Recv ZSGSRD 31030
17-03-17 18:32:38.698 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:38.698 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:38.698 -07 000000415 INF: FPGA: Recv ZSGSRD 31029
17-03-17 18:32:38.708 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:38.718 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:38.718 -07 000000478 INF: FPGA: Recv ZPIEZORD 26906
17-03-17 18:32:38.728 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:32:38.728 -07 000000623 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.657 V. Piezo Error = -9.1 V.
17-03-17 18:32:38.728 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31036 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31036 (-138.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 31028 (-138.9 uncal um), Max = 31045 (-139.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:32:38.728 -07 000000623 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31036, posNoise = 9, negNoise = 8
17-03-17 18:32:38.728 -07 000000623 INF: Z Motor: After move to -0.139707, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:38.728 -07 000000623 INF: Z Motor: Settle wait time = 1442 ms, measure time = 118 ms (allowed 150 ms), total time = 1560 ms
17-03-17 18:32:38.728 -07 000000623 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 18:32:38.768 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 18:32:38.768 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:32:38.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:38.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:38.768 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:38.768 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:38.768 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:32:38.768 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:38.778 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:38.778 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:32:38.778 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:38.778 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:32:38.788 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:32:38.788 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:32:38.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:32:38.838 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:32:39.028 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.003063,
17-03-17 18:32:39.028 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:32:39.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:32:39.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:32:39.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 18:32:39.068 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:32:39.068 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 18:32:39.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:32:39.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:32:39.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:39.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:32:39.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:32:39.178 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:39.178 -07 000000415 INF: Autofocus start
17-03-17 18:32:39.178 -07 000000415 INF: MeasureProfile start
17-03-17 18:32:39.178 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:39.188 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:32:39.188 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:32:39.188 -07 000000415 INF: MeasureProfile done
17-03-17 18:32:39.188 -07 000000415 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:32:39.188 -07 000000415 INF: Autofocus finished
17-03-17 18:32:39.388 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:32:39.388 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:32:39.388 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139705200042828. ----------
17-03-17 18:32:39.388 -07 000000610 INF: Cycle	14	Tile	3	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:32:39.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29014, sync = True, waitForSettling = True)
17-03-17 18:32:39.398 -07 000000610 INF: Z Motor: Moving to -0.132818 mm, started at -0.139705 mm, distance = 6.89 um
17-03-17 18:32:39.398 -07 000000610 INF: FPGA: Xmit ZDACW 29014\n [Z Motor]
17-03-17 18:32:39.398 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:32:39.408 -07 000000610 INF: FPGA: 'ZDACW 29014' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:32:39.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:39.408 -07 000000512 INF: FPGA: Recv ZDACR 29014
17-03-17 18:32:39.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:39.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:32:39.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:39.568 -07 000000623 INF: FPGA: Recv ZSGSRD 29965
17-03-17 18:32:39.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:39.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:39.578 -07 000000482 INF: FPGA: Recv ZSGSRD 29969
17-03-17 18:32:39.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:39.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:39.588 -07 000000415 INF: FPGA: Recv ZSGSRD 29964
17-03-17 18:32:39.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:39.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:39.598 -07 000000512 INF: FPGA: Recv ZSGSRD 29962
17-03-17 18:32:39.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:39.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:39.608 -07 000000618 INF: FPGA: Recv ZSGSRD 29970
17-03-17 18:32:39.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:39.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:39.618 -07 000000415 INF: FPGA: Recv ZSGSRD 29966
17-03-17 18:32:39.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:39.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:39.628 -07 000000475 INF: FPGA: Recv ZSGSRD 29964
17-03-17 18:32:39.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:39.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:39.638 -07 000000608 INF: FPGA: Recv ZSGSRD 29955
17-03-17 18:32:39.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:39.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:39.648 -07 000000012 INF: FPGA: Recv ZSGSRD 29964
17-03-17 18:32:39.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:39.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:39.658 -07 000000415 INF: FPGA: Recv ZSGSRD 29969
17-03-17 18:32:39.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:39.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:39.668 -07 000000623 INF: FPGA: Recv ZPIEZORD 25485
17-03-17 18:32:39.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:39.678 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.427 V. Piezo Error = -9.8 V.
17-03-17 18:32:39.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29965 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29964 (-132.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29955 (-132.0 uncal um), Max = 29970 (-132.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 18:32:39.678 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29965, posNoise = 5, negNoise = 10
17-03-17 18:32:39.678 -07 000000610 INF: Z Motor: After move to -0.132818, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:39.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:32:39.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:39.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:39.678 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:39.678 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:32:39.678 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:39.678 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:32:39.678 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:32:39.678 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:39.678 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:39.678 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:32:39.678 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:32:39.678 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:32:39.688 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:32:39.688 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:32:39.688 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:32:39.688 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:32:39.698 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 18:32:39.698 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:32:39.698 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:32:39.698 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:32:39.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29191 150\n [Camera]
17-03-17 18:32:39.898 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:32:40.298 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:32:40.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:32:40.298 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:40.298 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:40.298 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:32:40.298 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:32:40.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:32:40.298 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:40.298 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:40.298 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 18:32:40.488 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29191 778
17-03-17 18:32:40.638 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:32:40.688 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:32:40.688 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 18:32:40.688 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:40.688 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:32:40.688 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 18:32:40.688 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:40.688 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:40.688 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:32:40.798 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 110 ms.
17-03-17 18:32:40.808 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 18:32:40.828 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:32:40.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:32:40.828 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:40.828 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:32:40.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:32:40.828 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:40.838 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:40.838 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:32:40.838 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:40.838 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 18:32:41.018 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:32:41.018 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:32:41.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29191 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:32:41.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:32:41.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.132824868839002. ------
17-03-17 18:32:41.028 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13929 mm
17-03-17 18:32:41.028 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:32:41.028 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:41.028 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30428, sync = True, waitForSettling = False)
17-03-17 18:32:41.028 -07 000000482 INF: Z Motor: Moving to -0.139290 mm, started at -0.132825 mm, distance = -6.47 um
17-03-17 18:32:41.028 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:41.028 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 18:32:41.028 -07 000000623 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 18:32:41.038 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:32:41.038 -07 000000482 INF: FPGA: Xmit ZDACW 30428\n [Z Motor]
17-03-17 18:32:41.038 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:32:41.048 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:41.048 -07 000000482 INF: FPGA: 'ZDACW 30428' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:32:41.048 -07 000000429 INF: FPGA: Recv YRDPOS 126085
17-03-17 18:32:41.058 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:32:41.058 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:32:41.058 -07 000000623 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:41.058 -07 000000623 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:32:41.058 -07 000000623 INF: Y Motor: Moving 1340 steps-17
17-03-17 18:32:41.068 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:41.068 -07 000000608 INF: FPGA: Recv ZDACR 30428
17-03-17 18:32:41.078 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:32:41.078 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:32:41.078 -07 000000482 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:32:41.228 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:32:41.228 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:32:41.228 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:41.228 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:32:41.238 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:32:41.238 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:41.238 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:41.238 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 18:32:41.238 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:41.248 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:32:41.258 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:32:41.258 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:32:41.448 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 18:32:41.448 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 18:32:41.488 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:41.488 -07 000000512 INF: FPGA: Recv YRDPOS 127787
17-03-17 18:32:41.498 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:41.498 -07 000000623 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:41.498 -07 000000623 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:32:41.498 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 18:32:41.598 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:32:41.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:32:42.448 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:42.448 -07 000000512 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:32:42.458 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:42.458 -07 000000623 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:42.468 -07 000000623 INF: Y Motor: After move to 62.402607, error = -0.006123, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:32:42.468 -07 000000623 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:32:42.468 -07 000000623 INF: Y Motor: Moved to 62.3965 after 1441 ms (table move)
17-03-17 18:32:42.478 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139290 mm (DAC = 30428)
17-03-17 18:32:42.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:42.478 -07 000000478 INF: FPGA: Recv ZSGSRD 30983
17-03-17 18:32:42.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:42.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:42.488 -07 000000608 INF: FPGA: Recv ZSGSRD 30973
17-03-17 18:32:42.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:42.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:42.498 -07 000000512 INF: FPGA: Recv ZSGSRD 30974
17-03-17 18:32:42.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:42.508 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:42.508 -07 000000415 INF: FPGA: Recv ZSGSRD 30975
17-03-17 18:32:42.518 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:42.518 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:42.518 -07 000000512 INF: FPGA: Recv ZSGSRD 30976
17-03-17 18:32:42.528 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:42.528 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:42.528 -07 000000512 INF: FPGA: Recv ZSGSRD 30978
17-03-17 18:32:42.538 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:42.538 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:42.538 -07 000000448 INF: FPGA: Recv ZSGSRD 30973
17-03-17 18:32:42.548 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:42.548 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:42.548 -07 000000478 INF: FPGA: Recv ZSGSRD 30966
17-03-17 18:32:42.558 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:42.558 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:42.558 -07 000000618 INF: FPGA: Recv ZSGSRD 30973
17-03-17 18:32:42.568 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:42.568 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:42.568 -07 000000482 INF: FPGA: Recv ZSGSRD 30972
17-03-17 18:32:42.578 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:42.578 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:42.578 -07 000000415 INF: FPGA: Recv ZPIEZORD 26823
17-03-17 18:32:42.588 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:42.588 -07 000000012 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -9.1 V.
17-03-17 18:32:42.588 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30974 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30974 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30966 (-138.5 uncal um), Max = 30983 (-138.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:32:42.588 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30974, posNoise = 9, negNoise = 8
17-03-17 18:32:42.588 -07 000000012 INF: Z Motor: After move to -0.139290, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:42.588 -07 000000012 INF: Z Motor: Settle wait time = 1446 ms, measure time = 108 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:32:42.588 -07 000000012 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 18:32:42.638 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 18:32:42.638 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:32:42.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:42.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:42.638 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:42.638 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:42.638 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:32:42.638 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:42.638 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:42.648 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:32:42.648 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:42.648 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:32:42.658 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:32:42.658 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:32:42.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:32:42.708 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:32:42.908 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:32:42.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:32:42.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:32:42.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 18:32:42.948 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:32:42.948 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 18:32:42.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 18:32:43.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 18:32:43.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:43.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:32:43.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 18:32:43.048 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:43.048 -07 000000415 INF: Autofocus start
17-03-17 18:32:43.048 -07 000000415 INF: MeasureProfile start
17-03-17 18:32:43.048 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:43.058 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:32:43.058 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:32:43.058 -07 000000415 INF: MeasureProfile done
17-03-17 18:32:43.058 -07 000000415 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:32:43.058 -07 000000415 INF: Autofocus finished
17-03-17 18:32:43.258 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:32:43.258 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:32:43.258 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.396484375, Z-position -0.139306898890039. ----------
17-03-17 18:32:43.268 -07 000000610 INF: Cycle	14	Tile	4	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:32:43.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28952, sync = True, waitForSettling = True)
17-03-17 18:32:43.268 -07 000000610 INF: Z Motor: Moving to -0.132534 mm, started at -0.139307 mm, distance = 6.77 um
17-03-17 18:32:43.268 -07 000000610 INF: FPGA: Xmit ZDACW 28952\n [Z Motor]
17-03-17 18:32:43.268 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 18:32:43.278 -07 000000610 INF: FPGA: 'ZDACW 28952' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:32:43.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:43.278 -07 000000623 INF: FPGA: Recv ZDACR 28952
17-03-17 18:32:43.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:43.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:32:43.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:43.438 -07 000000623 INF: FPGA: Recv ZSGSRD 29915
17-03-17 18:32:43.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:43.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:43.448 -07 000000623 INF: FPGA: Recv ZSGSRD 29919
17-03-17 18:32:43.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:43.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:43.458 -07 000000623 INF: FPGA: Recv ZSGSRD 29918
17-03-17 18:32:43.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:43.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:43.468 -07 000000623 INF: FPGA: Recv ZSGSRD 29918
17-03-17 18:32:43.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:43.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:43.478 -07 000000512 INF: FPGA: Recv ZSGSRD 29924
17-03-17 18:32:43.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:43.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:43.488 -07 000000623 INF: FPGA: Recv ZSGSRD 29916
17-03-17 18:32:43.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:43.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:43.498 -07 000000512 INF: FPGA: Recv ZSGSRD 29920
17-03-17 18:32:43.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:43.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:43.508 -07 000000480 INF: FPGA: Recv ZSGSRD 29922
17-03-17 18:32:43.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:43.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:43.518 -07 000000512 INF: FPGA: Recv ZSGSRD 29918
17-03-17 18:32:43.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:43.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:43.528 -07 000000480 INF: FPGA: Recv ZSGSRD 29919
17-03-17 18:32:43.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:43.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:43.538 -07 000000512 INF: FPGA: Recv ZPIEZORD 25466
17-03-17 18:32:43.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:43.548 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.418 V. Piezo Error = -9.8 V.
17-03-17 18:32:43.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29919 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29918 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29915 (-131.7 uncal um), Max = 29924 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:32:43.548 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29919, posNoise = 5, negNoise = 4
17-03-17 18:32:43.548 -07 000000610 INF: Z Motor: After move to -0.132534, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:43.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 18:32:43.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:43.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:43.548 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:43.548 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:43.548 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:32:43.548 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:43.548 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:32:43.548 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:32:43.548 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:43.548 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:32:43.548 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:32:43.548 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:32:43.558 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:43.558 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:32:43.558 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:32:43.558 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:32:43.568 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:32:43.568 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:32:43.568 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:32:43.568 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:32:43.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29129 150\n [Camera]
17-03-17 18:32:43.768 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:32:44.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:32:44.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:32:44.168 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:44.168 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:44.168 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:32:44.168 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:32:44.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:32:44.168 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:44.168 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:44.168 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 18:32:44.358 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29129 778
17-03-17 18:32:44.398 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.978563,
17-03-17 18:32:44.508 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:32:44.558 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:32:44.558 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:32:44.558 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:44.568 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:32:44.568 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:32:44.568 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:44.568 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:44.568 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:32:44.568 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:44.578 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 18:32:44.698 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:32:44.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:32:44.698 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:44.698 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:44.698 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 18:32:44.698 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:32:44.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:32:44.698 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:44.698 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:44.698 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:32:44.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:32:44.888 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:32:44.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29129 150' command took 2 ms to send, 1312 ms to get response, and 1317 ms overall
17-03-17 18:32:44.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:32:44.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.396484375, Z-Position -0.132529355080481. ------
17-03-17 18:32:44.888 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:44.888 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13912 mm
17-03-17 18:32:44.888 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:32:44.898 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 18:32:44.898 -07 000000448 INF: Y Motor: Moving to 63.2326 mm, started at 62.3965 mm, delta = 0.8361 mm
17-03-17 18:32:44.898 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:44.898 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30391, sync = True, waitForSettling = False)
17-03-17 18:32:44.898 -07 000000480 INF: Z Motor: Moving to -0.139121 mm, started at -0.132529 mm, distance = -6.59 um
17-03-17 18:32:44.898 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:32:44.898 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:44.898 -07 000000482 INF: FPGA: Recv YRDPOS 127788
17-03-17 18:32:44.908 -07 000000448 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:32:44.908 -07 000000448 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:44.908 -07 000000448 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:32:44.908 -07 000000448 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:32:44.908 -07 000000480 INF: FPGA: Xmit ZDACW 30391\n [Z Motor]
17-03-17 18:32:44.908 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:32:44.918 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:32:44.918 -07 000000480 INF: FPGA: 'ZDACW 30391' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:32:44.928 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:32:44.938 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:44.938 -07 000000512 INF: FPGA: Recv ZDACR 30391
17-03-17 18:32:44.948 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:32:44.948 -07 000000480 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 18:32:45.088 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:32:45.088 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:32:45.088 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:45.098 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 18:32:45.098 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 18:32:45.098 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:45.098 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:45.098 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:32:45.098 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:32:45.108 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 18:32:45.118 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:32:45.118 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 18:32:45.298 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:32:45.298 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:32:45.338 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:45.338 -07 000000618 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:32:45.348 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:45.348 -07 000000448 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:45.348 -07 000000448 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 18:32:45.348 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.106 mm/sec
17-03-17 18:32:46.298 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:46.298 -07 000000623 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:32:46.308 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:46.308 -07 000000448 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:46.328 -07 000000448 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:32:46.328 -07 000000448 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:32:46.328 -07 000000448 INF: Y Motor: Moved to 63.2251 after 1430 ms (table move)
17-03-17 18:32:46.328 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139121 mm (DAC = 30391)
17-03-17 18:32:46.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:46.328 -07 000000012 INF: FPGA: Recv ZSGSRD 30942
17-03-17 18:32:46.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:32:46.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:46.338 -07 000000480 INF: FPGA: Recv ZSGSRD 30945
17-03-17 18:32:46.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:46.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:46.348 -07 000000448 INF: FPGA: Recv ZSGSRD 30942
17-03-17 18:32:46.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:46.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:46.358 -07 000000480 INF: FPGA: Recv ZSGSRD 30952
17-03-17 18:32:46.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:46.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:46.368 -07 000000448 INF: FPGA: Recv ZSGSRD 30953
17-03-17 18:32:46.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:46.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:46.378 -07 000000480 INF: FPGA: Recv ZSGSRD 30952
17-03-17 18:32:46.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:46.388 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:46.388 -07 000000415 INF: FPGA: Recv ZSGSRD 30947
17-03-17 18:32:46.398 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:46.398 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:46.398 -07 000000623 INF: FPGA: Recv ZSGSRD 30943
17-03-17 18:32:46.408 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:46.408 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:46.408 -07 000000448 INF: FPGA: Recv ZSGSRD 30944
17-03-17 18:32:46.418 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:46.418 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:46.418 -07 000000480 INF: FPGA: Recv ZSGSRD 30944
17-03-17 18:32:46.428 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:46.428 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:46.428 -07 000000415 INF: FPGA: Recv ZPIEZORD 26839
17-03-17 18:32:46.438 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:46.438 -07 000000608 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.637 V. Piezo Error = -9.0 V.
17-03-17 18:32:46.438 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30946 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30944 (-138.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30942 (-138.3 uncal um), Max = 30953 (-138.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:32:46.438 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30946, posNoise = 7, negNoise = 4
17-03-17 18:32:46.438 -07 000000608 INF: Z Motor: After move to -0.139121, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:46.438 -07 000000608 INF: Z Motor: Settle wait time = 1432 ms, measure time = 105 ms (allowed 150 ms), total time = 1537 ms
17-03-17 18:32:46.438 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:32:46.488 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 18:32:46.488 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:32:46.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:46.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:46.488 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:46.488 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:46.488 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:32:46.488 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:46.488 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:46.488 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:32:46.498 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:32:46.498 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:32:46.508 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:32:46.508 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:32:46.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:32:46.558 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:32:46.598 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:32:46.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:32:46.758 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:32:46.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:32:46.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:32:46.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2322067272, 0x0, 559484976) start.
17-03-17 18:32:46.798 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:32:46.798 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 18:32:46.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 18:32:46.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2322067272, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:32:46.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:46.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:32:46.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 18:32:46.898 -07 000000480 INF: Autofocus start
17-03-17 18:32:46.898 -07 000000480 INF: MeasureProfile start
17-03-17 18:32:46.898 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:46.898 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:46.908 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:46.908 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:32:46.908 -07 000000480 INF: MeasureProfile done
17-03-17 18:32:46.908 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:32:46.908 -07 000000480 INF: Autofocus finished
17-03-17 18:32:47.108 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:32:47.108 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:32:47.108 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.13912702095007. ----------
17-03-17 18:32:47.108 -07 000000610 INF: Cycle	14	Tile	5	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:32:47.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28916, sync = True, waitForSettling = True)
17-03-17 18:32:47.118 -07 000000610 INF: Z Motor: Moving to -0.132369 mm, started at -0.139127 mm, distance = 6.76 um
17-03-17 18:32:47.118 -07 000000610 INF: FPGA: Xmit ZDACW 28916\n [Z Motor]
17-03-17 18:32:47.118 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:32:47.128 -07 000000610 INF: FPGA: 'ZDACW 28916' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:47.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:47.128 -07 000000482 INF: FPGA: Recv ZDACR 28916
17-03-17 18:32:47.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:47.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:32:47.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:47.288 -07 000000608 INF: FPGA: Recv ZSGSRD 29895
17-03-17 18:32:47.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:47.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:47.298 -07 000000482 INF: FPGA: Recv ZSGSRD 29901
17-03-17 18:32:47.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:47.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:47.308 -07 000000431 INF: FPGA: Recv ZSGSRD 29894
17-03-17 18:32:47.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:47.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:47.318 -07 000000482 INF: FPGA: Recv ZSGSRD 29892
17-03-17 18:32:47.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:47.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:47.328 -07 000000415 INF: FPGA: Recv ZSGSRD 29896
17-03-17 18:32:47.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:47.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:47.338 -07 000000429 INF: FPGA: Recv ZSGSRD 29896
17-03-17 18:32:47.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:47.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:47.348 -07 000000415 INF: FPGA: Recv ZSGSRD 29897
17-03-17 18:32:47.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:47.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:47.358 -07 000000512 INF: FPGA: Recv ZSGSRD 29888
17-03-17 18:32:47.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:47.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:47.368 -07 000000415 INF: FPGA: Recv ZSGSRD 29900
17-03-17 18:32:47.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:47.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:47.378 -07 000000429 INF: FPGA: Recv ZSGSRD 29900
17-03-17 18:32:47.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:47.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:47.388 -07 000000623 INF: FPGA: Recv ZPIEZORD 25444
17-03-17 18:32:47.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:32:47.398 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.8 V.
17-03-17 18:32:47.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29896 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29896 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29888 (-131.5 uncal um), Max = 29901 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:32:47.398 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29896, posNoise = 5, negNoise = 8
17-03-17 18:32:47.398 -07 000000610 INF: Z Motor: After move to -0.132369, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:47.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:32:47.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:47.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:47.398 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:47.398 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:47.398 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:32:47.398 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:32:47.398 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:32:47.398 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:47.398 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:32:47.398 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:32:47.398 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:47.398 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:32:47.398 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:32:47.398 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:32:47.408 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:32:47.408 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:32:47.418 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:32:47.418 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:32:47.418 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:32:47.418 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:32:47.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29092 150\n [Camera]
17-03-17 18:32:47.618 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:32:48.018 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:32:48.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:32:48.018 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:48.018 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:48.018 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 18:32:48.018 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:32:48.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:32:48.018 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:48.138 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:48.138 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:32:48.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29092 778
17-03-17 18:32:48.358 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:32:48.418 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:32:48.418 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 18:32:48.418 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:48.418 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:48.418 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:32:48.518 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 18:32:48.518 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:32:48.518 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:48.528 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:32:48.528 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 18:32:48.548 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:32:48.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:32:48.548 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:48.548 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:32:48.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:32:48.548 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:48.558 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:48.558 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:32:48.558 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:48.558 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 18:32:48.738 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-17 18:32:48.738 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:32:48.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29092 150' command took 2 ms to send, 1307 ms to get response, and 1319 ms overall
17-03-17 18:32:48.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:32:48.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132381598201221. ------
17-03-17 18:32:48.748 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:48.748 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13883 mm
17-03-17 18:32:48.748 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:32:48.748 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:48.748 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 18:32:48.748 -07 000000623 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 18:32:48.748 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30328, sync = True, waitForSettling = False)
17-03-17 18:32:48.748 -07 000000480 INF: Z Motor: Moving to -0.138833 mm, started at -0.132382 mm, distance = -6.45 um
17-03-17 18:32:48.758 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:48.758 -07 000000480 INF: FPGA: Xmit ZDACW 30328\n [Z Motor]
17-03-17 18:32:48.758 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:32:48.768 -07 000000480 INF: FPGA: 'ZDACW 30328' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:48.768 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:32:48.778 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:48.778 -07 000000476 INF: FPGA: Recv YRDPOS 129485
17-03-17 18:32:48.788 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:48.788 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:32:48.788 -07 000000623 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:48.788 -07 000000623 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:32:48.788 -07 000000623 INF: Y Motor: Moving 1340 steps-15
17-03-17 18:32:48.788 -07 000000482 INF: FPGA: Recv ZDACR 30328
17-03-17 18:32:48.798 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:32:48.798 -07 000000480 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 18:32:48.798 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:32:48.938 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:32:48.938 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 18:32:48.938 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:48.948 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 18:32:48.948 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 18:32:48.948 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:48.948 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:48.948 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:32:48.948 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:48.958 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:32:48.968 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:32:48.968 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 18:32:49.168 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 18:32:49.168 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 18:32:49.198 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:49.208 -07 000000608 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:32:49.218 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:49.218 -07 000000623 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:49.218 -07 000000623 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 18:32:49.218 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.164 mm/sec
17-03-17 18:32:49.768 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.974486,
17-03-17 18:32:50.168 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:50.168 -07 000000501 INF: FPGA: Recv YRDPOS 131190
17-03-17 18:32:50.178 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:50.178 -07 000000623 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:50.188 -07 000000623 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:32:50.188 -07 000000623 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:32:50.188 -07 000000623 INF: Y Motor: Moved to 64.0576 after 1437 ms (table move)
17-03-17 18:32:50.198 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138833 mm (DAC = 30328)
17-03-17 18:32:50.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:50.198 -07 000000512 INF: FPGA: Recv ZSGSRD 30903
17-03-17 18:32:50.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:32:50.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:50.208 -07 000000501 INF: FPGA: Recv ZSGSRD 30909
17-03-17 18:32:50.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:50.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:50.218 -07 000000476 INF: FPGA: Recv ZSGSRD 30900
17-03-17 18:32:50.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:50.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:50.228 -07 000000480 INF: FPGA: Recv ZSGSRD 30907
17-03-17 18:32:50.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:50.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:50.238 -07 000000623 INF: FPGA: Recv ZSGSRD 30896
17-03-17 18:32:50.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:50.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:50.248 -07 000000448 INF: FPGA: Recv ZSGSRD 30902
17-03-17 18:32:50.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:50.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:50.258 -07 000000012 INF: FPGA: Recv ZSGSRD 30903
17-03-17 18:32:50.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:50.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:50.268 -07 000000480 INF: FPGA: Recv ZSGSRD 30891
17-03-17 18:32:50.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:50.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:50.278 -07 000000012 INF: FPGA: Recv ZSGSRD 30903
17-03-17 18:32:50.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:50.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:50.288 -07 000000480 INF: FPGA: Recv ZSGSRD 30905
17-03-17 18:32:50.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:50.298 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:50.298 -07 000000012 INF: FPGA: Recv ZPIEZORD 26781
17-03-17 18:32:50.308 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:50.308 -07 000000431 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.628 V. Piezo Error = -9.1 V.
17-03-17 18:32:50.308 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30902 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30903 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30891 (-138.0 uncal um), Max = 30909 (-138.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 18:32:50.308 -07 000000431 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30902, posNoise = 7, negNoise = 11
17-03-17 18:32:50.308 -07 000000431 INF: Z Motor: After move to -0.138833, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:50.308 -07 000000431 INF: Z Motor: Settle wait time = 1441 ms, measure time = 110 ms (allowed 150 ms), total time = 1551 ms
17-03-17 18:32:50.308 -07 000000431 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 18:32:50.348 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 18:32:50.348 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:32:50.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:50.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:50.348 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:50.348 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:50.348 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:32:50.348 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:50.348 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:32:50.348 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:32:50.358 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:50.358 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:32:50.368 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:32:50.368 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:32:50.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:32:50.418 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:32:50.618 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:32:50.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:32:50.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:32:50.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-17 18:32:50.658 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:32:50.658 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 18:32:50.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 18:32:50.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 18:32:50.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:50.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:32:50.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:32:50.868 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:50.868 -07 000000482 INF: Autofocus start
17-03-17 18:32:50.868 -07 000000482 INF: MeasureProfile start
17-03-17 18:32:50.868 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:50.878 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:32:50.878 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:32:50.878 -07 000000482 INF: MeasureProfile done
17-03-17 18:32:50.878 -07 000000482 INF: X=32  Z correction [um]=0.1299841
17-03-17 18:32:50.878 -07 000000482 INF: Autofocus finished
17-03-17 18:32:51.078 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:32:51.078 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:32:51.078 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138844355615832. ----------
17-03-17 18:32:51.078 -07 000000610 INF: Cycle	14	Tile	6	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:32:51.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28869, sync = True, waitForSettling = True)
17-03-17 18:32:51.088 -07 000000610 INF: Z Motor: Moving to -0.132154 mm, started at -0.138844 mm, distance = 6.69 um
17-03-17 18:32:51.088 -07 000000610 INF: FPGA: Xmit ZDACW 28869\n [Z Motor]
17-03-17 18:32:51.088 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:32:51.098 -07 000000610 INF: FPGA: 'ZDACW 28869' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:32:51.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:51.098 -07 000000480 INF: FPGA: Recv ZDACR 28869
17-03-17 18:32:51.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:51.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:32:51.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:51.258 -07 000000448 INF: FPGA: Recv ZSGSRD 29865
17-03-17 18:32:51.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:51.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:51.268 -07 000000478 INF: FPGA: Recv ZSGSRD 29865
17-03-17 18:32:51.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:51.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:51.278 -07 000000482 INF: FPGA: Recv ZSGSRD 29857
17-03-17 18:32:51.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:51.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:51.288 -07 000000431 INF: FPGA: Recv ZSGSRD 29859
17-03-17 18:32:51.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:51.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:51.298 -07 000000608 INF: FPGA: Recv ZSGSRD 29865
17-03-17 18:32:51.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:51.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:51.308 -07 000000480 INF: FPGA: Recv ZSGSRD 29864
17-03-17 18:32:51.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:51.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:51.318 -07 000000482 INF: FPGA: Recv ZSGSRD 29864
17-03-17 18:32:51.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:51.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:51.328 -07 000000478 INF: FPGA: Recv ZSGSRD 29865
17-03-17 18:32:51.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:51.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:51.338 -07 000000618 INF: FPGA: Recv ZSGSRD 29866
17-03-17 18:32:51.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:51.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:51.348 -07 000000429 INF: FPGA: Recv ZSGSRD 29862
17-03-17 18:32:51.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:51.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:51.358 -07 000000512 INF: FPGA: Recv ZPIEZORD 25406
17-03-17 18:32:51.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:51.368 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.405 V. Piezo Error = -9.8 V.
17-03-17 18:32:51.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29863 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29864 (-131.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29857 (-131.3 uncal um), Max = 29866 (-131.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:32:51.368 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29863, posNoise = 3, negNoise = 6
17-03-17 18:32:51.368 -07 000000610 INF: Z Motor: After move to -0.132154, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:51.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:32:51.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:51.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:51.368 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:51.368 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:51.368 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:32:51.368 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:32:51.368 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:32:51.368 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:51.368 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 18:32:51.368 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:32:51.368 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:51.368 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:32:51.378 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:32:51.378 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:32:51.378 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:51.378 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:32:51.388 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:32:51.388 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 18:32:51.388 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 18:32:51.388 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:32:51.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 29045 150\n [Camera]
17-03-17 18:32:51.588 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:32:51.598 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:32:51.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:32:51.978 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:32:51.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:32:51.978 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:51.978 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:32:51.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:32:51.978 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:51.988 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:51.988 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 18:32:51.988 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:51.988 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:32:52.168 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29045 778
17-03-17 18:32:52.318 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:32:52.358 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 18:32:52.358 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 18:32:52.358 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:52.358 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 18:32:52.358 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 18:32:52.358 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:52.358 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:52.358 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:32:52.368 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:52.368 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 18:32:52.508 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:32:52.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:32:52.508 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:52.518 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:52.518 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:32:52.518 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:32:52.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:32:52.518 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:52.518 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:52.518 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 18:32:52.698 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:32:52.698 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:32:52.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 29045 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-17 18:32:52.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:32:52.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.132169599200542. ------
17-03-17 18:32:52.708 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:52.708 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13863 mm
17-03-17 18:32:52.708 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:32:52.708 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:52.708 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 18:32:52.708 -07 000000608 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 18:32:52.708 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30283, sync = True, waitForSettling = False)
17-03-17 18:32:52.708 -07 000000623 INF: Z Motor: Moving to -0.138627 mm, started at -0.132170 mm, distance = -6.46 um
17-03-17 18:32:52.718 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:32:52.718 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:52.718 -07 000000501 INF: FPGA: Recv YRDPOS 131191
17-03-17 18:32:52.728 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:52.728 -07 000000608 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:52.728 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:32:52.728 -07 000000608 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:32:52.728 -07 000000608 INF: Y Motor: Moving 1335 steps-10
17-03-17 18:32:52.738 -07 000000623 INF: FPGA: Xmit ZDACW 30283\n [Z Motor]
17-03-17 18:32:52.738 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:32:52.748 -07 000000623 INF: FPGA: 'ZDACW 30283' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 18:32:52.748 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:32:52.758 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:52.758 -07 000000618 INF: FPGA: Recv ZDACR 30283
17-03-17 18:32:52.768 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:32:52.768 -07 000000623 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 18:32:52.918 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:32:52.918 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:32:52.918 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:52.918 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:32:52.918 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:32:52.918 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:52.918 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:52.918 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 18:32:52.918 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:52.928 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:32:52.928 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 18:32:52.928 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:32:53.118 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 18:32:53.118 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 18:32:53.148 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:53.158 -07 000000482 INF: FPGA: Recv YRDPOS 132873
17-03-17 18:32:53.158 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:32:53.158 -07 000000608 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:53.158 -07 000000608 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:32:53.158 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.835 mm, average velocity = 2.119 mm/sec
17-03-17 18:32:54.108 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:54.108 -07 000000431 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:32:54.118 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:54.118 -07 000000608 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:54.138 -07 000000608 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:32:54.138 -07 000000608 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:32:54.138 -07 000000608 INF: Y Motor: Moved to 64.8799 after 1421 ms (table move)
17-03-17 18:32:54.138 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138627 mm (DAC = 30283)
17-03-17 18:32:54.138 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:54.138 -07 000000012 INF: FPGA: Recv ZSGSRD 30869
17-03-17 18:32:54.148 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:32:54.148 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:54.148 -07 000000448 INF: FPGA: Recv ZSGSRD 30861
17-03-17 18:32:54.158 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:54.158 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:54.158 -07 000000478 INF: FPGA: Recv ZSGSRD 30869
17-03-17 18:32:54.168 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:54.168 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:54.168 -07 000000480 INF: FPGA: Recv ZSGSRD 30856
17-03-17 18:32:54.178 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:54.178 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:54.178 -07 000000012 INF: FPGA: Recv ZSGSRD 30873
17-03-17 18:32:54.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:54.188 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:54.188 -07 000000448 INF: FPGA: Recv ZSGSRD 30882
17-03-17 18:32:54.198 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:54.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:54.198 -07 000000478 INF: FPGA: Recv ZSGSRD 30873
17-03-17 18:32:54.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:54.208 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:54.208 -07 000000480 INF: FPGA: Recv ZSGSRD 30873
17-03-17 18:32:54.218 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:54.218 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:54.218 -07 000000448 INF: FPGA: Recv ZSGSRD 30861
17-03-17 18:32:54.228 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:54.228 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:54.228 -07 000000623 INF: FPGA: Recv ZSGSRD 30868
17-03-17 18:32:54.238 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:54.238 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:54.238 -07 000000424 INF: FPGA: Recv ZPIEZORD 26750
17-03-17 18:32:54.248 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:54.248 -07 000000415 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -9.1 V.
17-03-17 18:32:54.248 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30868 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30869 (-137.8 uncal um), StdDev = 8 (0.1 uncal um), Range = 26 (0.2 uncal um), Min = 30856 (-137.7 uncal um), Max = 30882 (-137.9 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 18:32:54.248 -07 000000415 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30868, posNoise = 14, negNoise = 12
17-03-17 18:32:54.248 -07 000000415 INF: Z Motor: After move to -0.138627, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:54.248 -07 000000415 INF: Z Motor: Settle wait time = 1425 ms, measure time = 106 ms (allowed 150 ms), total time = 1531 ms
17-03-17 18:32:54.248 -07 000000415 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:32:54.298 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 18:32:54.298 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:32:54.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:54.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:54.298 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:54.298 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:54.298 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:32:54.298 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:54.308 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:54.308 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:32:54.308 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:32:54.308 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:32:54.318 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:32:54.318 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:32:54.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:32:54.368 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 18:32:54.568 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 18:32:54.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 18:32:54.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:32:54.678 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:32:54.678 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:32:54.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 355 ms to get response, and 358 ms overall
17-03-17 18:32:54.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) start.
17-03-17 18:32:54.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 18:32:54.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:54.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:32:54.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 230 ms.
17-03-17 18:32:54.878 -07 000000415 INF: Autofocus start
17-03-17 18:32:54.878 -07 000000415 INF: MeasureProfile start
17-03-17 18:32:54.878 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:54.878 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:54.888 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:32:54.888 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:32:54.888 -07 000000415 INF: MeasureProfile done
17-03-17 18:32:54.888 -07 000000415 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:32:54.888 -07 000000415 INF: Autofocus finished
17-03-17 18:32:55.088 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:32:55.088 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:32:55.088 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.138625932403012. ----------
17-03-17 18:32:55.098 -07 000000610 INF: Cycle	14	Tile	7	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:32:55.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28790, sync = True, waitForSettling = True)
17-03-17 18:32:55.098 -07 000000610 INF: Z Motor: Moving to -0.131792 mm, started at -0.138626 mm, distance = 6.83 um
17-03-17 18:32:55.098 -07 000000610 INF: FPGA: Xmit ZDACW 28790\n [Z Motor]
17-03-17 18:32:55.098 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:32:55.108 -07 000000610 INF: FPGA: 'ZDACW 28790' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:55.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:55.108 -07 000000480 INF: FPGA: Recv ZDACR 28790
17-03-17 18:32:55.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:55.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:32:55.148 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.996267,
17-03-17 18:32:55.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:55.268 -07 000000623 INF: FPGA: Recv ZSGSRD 29805
17-03-17 18:32:55.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:55.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:55.278 -07 000000482 INF: FPGA: Recv ZSGSRD 29808
17-03-17 18:32:55.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:55.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:55.288 -07 000000618 INF: FPGA: Recv ZSGSRD 29806
17-03-17 18:32:55.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:55.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:55.298 -07 000000501 INF: FPGA: Recv ZSGSRD 29807
17-03-17 18:32:55.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:55.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:55.308 -07 000000608 INF: FPGA: Recv ZSGSRD 29803
17-03-17 18:32:55.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:55.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:55.338 -07 000000593 INF: FPGA: Recv ZSGSRD 29811
17-03-17 18:32:55.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:32:55.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:55.348 -07 000000478 INF: FPGA: Recv ZSGSRD 29803
17-03-17 18:32:55.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:55.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:55.358 -07 000000429 INF: FPGA: Recv ZSGSRD 29806
17-03-17 18:32:55.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:55.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:55.368 -07 000000618 INF: FPGA: Recv ZSGSRD 29806
17-03-17 18:32:55.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:55.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:55.378 -07 000000448 INF: FPGA: Recv ZSGSRD 29809
17-03-17 18:32:55.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:55.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:55.388 -07 000000482 INF: FPGA: Recv ZPIEZORD 25318
17-03-17 18:32:55.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:55.398 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.8 V.
17-03-17 18:32:55.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29806 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29806 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29803 (-131.0 uncal um), Max = 29811 (-131.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:32:55.398 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29806, posNoise = 5, negNoise = 3
17-03-17 18:32:55.398 -07 000000610 INF: Z Motor: After move to -0.131792, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:55.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 298 ms)
17-03-17 18:32:55.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:55.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:55.398 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:55.398 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:55.398 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:32:55.398 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:55.398 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:32:55.398 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:32:55.398 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:55.398 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:32:55.398 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:32:55.398 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:32:55.398 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:55.398 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:32:55.408 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:32:55.408 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:32:55.418 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 18:32:55.418 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:32:55.418 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:32:55.418 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:32:55.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28967 150\n [Camera]
17-03-17 18:32:55.618 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:32:56.018 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:32:56.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:32:56.018 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:56.018 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:32:56.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:32:56.018 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:56.018 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:56.018 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:32:56.018 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:56.018 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:32:56.208 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28967 778
17-03-17 18:32:56.358 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:32:56.418 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:32:56.418 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:32:56.418 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:56.418 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:56.418 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:32:56.418 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 18:32:56.418 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 18:32:56.418 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:56.418 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:32:56.428 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:32:56.548 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:32:56.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:32:56.548 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:56.548 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:32:56.548 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:56.548 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) start.
17-03-17 18:32:56.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:32:56.548 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:56.548 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:56.548 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 18:32:56.598 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:32:56.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:32:56.738 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:32:56.738 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:32:56.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28967 150' command took 2 ms to send, 1307 ms to get response, and 1319 ms overall
17-03-17 18:32:56.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:32:56.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8798828125, Z-Position -0.131803419108462. ------
17-03-17 18:32:56.748 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13841 mm
17-03-17 18:32:56.748 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:32:56.748 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:56.748 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 18:32:56.748 -07 000000424 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 18:32:56.748 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30235, sync = True, waitForSettling = False)
17-03-17 18:32:56.748 -07 000000593 INF: Z Motor: Moving to -0.138407 mm, started at -0.131803 mm, distance = -6.60 um
17-03-17 18:32:56.748 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:56.758 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:32:56.758 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:56.758 -07 000000448 INF: FPGA: Recv YRDPOS 132874
17-03-17 18:32:56.768 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:32:56.768 -07 000000593 INF: FPGA: Xmit ZDACW 30235\n [Z Motor]
17-03-17 18:32:56.768 -07 000000424 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:56.768 -07 000000424 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:32:56.768 -07 000000424 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:32:56.768 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:32:56.778 -07 000000593 INF: FPGA: 'ZDACW 30235' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 18:32:56.778 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:32:56.788 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:32:56.798 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:56.798 -07 000000429 INF: FPGA: Recv ZDACR 30235
17-03-17 18:32:56.808 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:32:56.808 -07 000000593 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 18:32:56.948 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:32:56.948 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:32:56.948 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:56.948 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:32:56.958 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:32:56.958 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:56.958 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:56.958 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:32:56.958 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:32:56.968 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:32:56.978 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:32:56.978 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:32:57.158 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 18:32:57.158 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:32:57.198 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:57.198 -07 000000482 INF: FPGA: Recv YRDPOS 134584
17-03-17 18:32:57.208 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:57.208 -07 000000424 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:57.208 -07 000000424 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 18:32:57.208 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 18:32:58.158 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:32:58.158 -07 000000415 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:32:58.168 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:58.168 -07 000000424 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:32:58.178 -07 000000424 INF: Y Motor: After move to 65.722610, error = -0.007278, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:32:58.178 -07 000000424 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:32:58.178 -07 000000424 INF: Y Motor: Moved to 65.7153 after 1432 ms (table move)
17-03-17 18:32:58.188 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138407 mm (DAC = 30235)
17-03-17 18:32:58.188 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:58.188 -07 000000431 INF: FPGA: Recv ZSGSRD 30843
17-03-17 18:32:58.198 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:32:58.198 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:58.198 -07 000000478 INF: FPGA: Recv ZSGSRD 30831
17-03-17 18:32:58.208 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:58.208 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:58.208 -07 000000593 INF: FPGA: Recv ZSGSRD 30838
17-03-17 18:32:58.218 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:58.218 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:58.218 -07 000000424 INF: FPGA: Recv ZSGSRD 30841
17-03-17 18:32:58.228 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:58.228 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:58.228 -07 000000431 INF: FPGA: Recv ZSGSRD 30835
17-03-17 18:32:58.238 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:58.238 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:58.238 -07 000000476 INF: FPGA: Recv ZSGSRD 30841
17-03-17 18:32:58.248 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:58.248 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:58.248 -07 000000480 INF: FPGA: Recv ZSGSRD 30838
17-03-17 18:32:58.258 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:58.258 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:58.258 -07 000000429 INF: FPGA: Recv ZSGSRD 30841
17-03-17 18:32:58.268 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:58.268 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:58.268 -07 000000512 INF: FPGA: Recv ZSGSRD 30835
17-03-17 18:32:58.278 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:58.278 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:58.278 -07 000000431 INF: FPGA: Recv ZSGSRD 30839
17-03-17 18:32:58.288 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:58.288 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:58.288 -07 000000618 INF: FPGA: Recv ZPIEZORD 26748
17-03-17 18:32:58.298 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:58.298 -07 000000623 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.614 V. Piezo Error = -9.0 V.
17-03-17 18:32:58.298 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30838 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30838 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30831 (-137.6 uncal um), Max = 30843 (-137.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:32:58.298 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30838, posNoise = 5, negNoise = 7
17-03-17 18:32:58.298 -07 000000623 INF: Z Motor: After move to -0.138407, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:58.298 -07 000000623 INF: Z Motor: Settle wait time = 1435 ms, measure time = 109 ms (allowed 150 ms), total time = 1544 ms
17-03-17 18:32:58.298 -07 000000623 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:32:58.348 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 18:32:58.348 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:32:58.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:58.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:58.348 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:58.348 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:58.348 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:32:58.348 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:58.348 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:32:58.348 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:32:58.358 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:32:58.358 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:32:58.358 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 18:32:58.358 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 18:32:58.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:32:58.408 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:32:58.608 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:32:58.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:32:58.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:32:58.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 600604488, 0x0, 559484976) start.
17-03-17 18:32:58.648 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:32:58.648 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 18:32:58.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 18:32:58.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 600604488, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 18:32:58.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:32:58.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 18:32:58.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 18:32:58.748 -07 000000012 INF: Autofocus start
17-03-17 18:32:58.748 -07 000000012 INF: MeasureProfile start
17-03-17 18:32:58.748 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:32:58.748 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:32:58.758 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:32:58.758 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:32:58.758 -07 000000012 INF: MeasureProfile done
17-03-17 18:32:58.758 -07 000000012 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:32:58.758 -07 000000012 INF: Autofocus finished
17-03-17 18:32:58.958 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:32:58.958 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:32:58.958 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71533203125, Z-position -0.138433206038759. ----------
17-03-17 18:32:58.958 -07 000000610 INF: Cycle	14	Tile	8	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:32:58.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28760, sync = True, waitForSettling = True)
17-03-17 18:32:58.968 -07 000000610 INF: Z Motor: Moving to -0.131655 mm, started at -0.138433 mm, distance = 6.78 um
17-03-17 18:32:58.968 -07 000000610 INF: FPGA: Xmit ZDACW 28760\n [Z Motor]
17-03-17 18:32:58.968 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:32:58.978 -07 000000610 INF: FPGA: 'ZDACW 28760' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:32:58.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:32:58.978 -07 000000429 INF: FPGA: Recv ZDACR 28760
17-03-17 18:32:58.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:58.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:32:59.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:59.138 -07 000000476 INF: FPGA: Recv ZSGSRD 29782
17-03-17 18:32:59.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:32:59.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:59.148 -07 000000476 INF: FPGA: Recv ZSGSRD 29788
17-03-17 18:32:59.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:59.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:59.158 -07 000000478 INF: FPGA: Recv ZSGSRD 29785
17-03-17 18:32:59.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:59.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:59.168 -07 000000431 INF: FPGA: Recv ZSGSRD 29781
17-03-17 18:32:59.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:59.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:59.178 -07 000000482 INF: FPGA: Recv ZSGSRD 29786
17-03-17 18:32:59.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:59.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:59.188 -07 000000501 INF: FPGA: Recv ZSGSRD 29779
17-03-17 18:32:59.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:59.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:59.198 -07 000000593 INF: FPGA: Recv ZSGSRD 29788
17-03-17 18:32:59.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:59.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:59.208 -07 000000448 INF: FPGA: Recv ZSGSRD 29779
17-03-17 18:32:59.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:59.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:59.218 -07 000000480 INF: FPGA: Recv ZSGSRD 29787
17-03-17 18:32:59.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:59.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:32:59.228 -07 000000476 INF: FPGA: Recv ZSGSRD 29790
17-03-17 18:32:59.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:59.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:32:59.238 -07 000000429 INF: FPGA: Recv ZPIEZORD 25326
17-03-17 18:32:59.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:32:59.248 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.8 V.
17-03-17 18:32:59.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29784 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29786 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29779 (-130.8 uncal um), Max = 29790 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:32:59.248 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29784, posNoise = 6, negNoise = 5
17-03-17 18:32:59.248 -07 000000610 INF: Z Motor: After move to -0.131655, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:32:59.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:32:59.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:32:59.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:32:59.248 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:32:59.248 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:32:59.248 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:32:59.248 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:32:59.248 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:32:59.248 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:32:59.248 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:32:59.248 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:32:59.248 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:32:59.248 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:32:59.258 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:32:59.258 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:32:59.258 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 18:32:59.258 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:32:59.268 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:32:59.268 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:32:59.268 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:32:59.268 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:32:59.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28936 150\n [Camera]
17-03-17 18:32:59.468 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:32:59.858 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:32:59.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:32:59.858 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:32:59.858 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:32:59.858 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 18:32:59.858 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:32:59.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:32:59.868 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:32:59.868 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:32:59.868 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:33:00.048 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28936 778
17-03-17 18:33:00.198 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:33:00.258 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:33:00.258 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:33:00.258 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:00.258 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:33:00.258 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:33:00.258 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:00.258 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:00.258 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:33:00.258 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:33:00.268 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:33:00.388 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:33:00.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:33:00.388 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:00.498 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:33:00.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:33:00.508 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:00.508 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.997626,
17-03-17 18:33:00.508 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:00.508 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 18:33:00.508 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:00.508 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:33:00.578 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:33:00.588 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:33:00.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28936 150' command took 2 ms to send, 1310 ms to get response, and 1317 ms overall
17-03-17 18:33:00.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:33:00.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71533203125, Z-Position -0.131662086441343. ------
17-03-17 18:33:00.588 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13800 mm
17-03-17 18:33:00.588 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:33:00.588 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:00.598 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30146, sync = True, waitForSettling = False)
17-03-17 18:33:00.598 -07 000000482 INF: Z Motor: Moving to -0.138000 mm, started at -0.131662 mm, distance = -6.34 um
17-03-17 18:33:00.598 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:00.598 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 18:33:00.598 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:33:00.598 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 18:33:00.598 -07 000000431 INF: Y Motor: Moving to 66.5526 mm, started at 65.7153 mm, delta = 0.8373 mm
17-03-17 18:33:00.608 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:00.608 -07 000000623 INF: FPGA: Recv YRDPOS 134585
17-03-17 18:33:00.618 -07 000000482 INF: FPGA: Xmit ZDACW 30146\n [Z Motor]
17-03-17 18:33:00.618 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:33:00.618 -07 000000431 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:00.618 -07 000000431 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:33:00.618 -07 000000431 INF: Y Motor: Moving 1340 steps-16
17-03-17 18:33:00.618 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:33:00.628 -07 000000482 INF: FPGA: 'ZDACW 30146' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:33:00.628 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:00.628 -07 000000476 INF: FPGA: Recv ZDACR 30146
17-03-17 18:33:00.638 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:00.638 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:33:00.638 -07 000000482 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 18:33:00.798 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:33:00.798 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:33:00.908 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 18:33:00.908 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:33:00.908 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:00.908 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 18:33:00.908 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:33:00.908 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:00.918 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:33:00.918 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:33:00.918 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 18:33:00.918 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 18:33:01.008 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:33:01.008 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:33:01.048 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:01.048 -07 000000512 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:33:01.058 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:33:01.058 -07 000000431 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:01.058 -07 000000431 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:33:01.058 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-17 18:33:01.598 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:33:01.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:33:02.008 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:02.008 -07 000000623 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:33:02.018 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:02.018 -07 000000431 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:02.038 -07 000000431 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:33:02.038 -07 000000431 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:33:02.038 -07 000000431 INF: Y Motor: Moved to 66.5400 after 1438 ms (table move)
17-03-17 18:33:02.038 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138000 mm (DAC = 30146)
17-03-17 18:33:02.038 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:02.038 -07 000000480 INF: FPGA: Recv ZSGSRD 30770
17-03-17 18:33:02.048 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:33:02.048 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:02.048 -07 000000501 INF: FPGA: Recv ZSGSRD 30770
17-03-17 18:33:02.058 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:02.058 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:02.058 -07 000000012 INF: FPGA: Recv ZSGSRD 30773
17-03-17 18:33:02.068 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:02.068 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:02.068 -07 000000618 INF: FPGA: Recv ZSGSRD 30767
17-03-17 18:33:02.078 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:02.078 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:02.078 -07 000000480 INF: FPGA: Recv ZSGSRD 30778
17-03-17 18:33:02.088 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:02.088 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:02.088 -07 000000448 INF: FPGA: Recv ZSGSRD 30779
17-03-17 18:33:02.098 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:02.098 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:02.098 -07 000000012 INF: FPGA: Recv ZSGSRD 30771
17-03-17 18:33:02.108 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:02.108 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:02.108 -07 000000618 INF: FPGA: Recv ZSGSRD 30769
17-03-17 18:33:02.118 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:02.118 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:02.118 -07 000000608 INF: FPGA: Recv ZSGSRD 30766
17-03-17 18:33:02.128 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:02.128 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:02.128 -07 000000501 INF: FPGA: Recv ZSGSRD 30773
17-03-17 18:33:02.138 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:02.138 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:02.138 -07 000000429 INF: FPGA: Recv ZPIEZORD 26647
17-03-17 18:33:02.148 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:02.148 -07 000000593 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.600 V. Piezo Error = -9.1 V.
17-03-17 18:33:02.148 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30772 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30770 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30766 (-137.2 uncal um), Max = 30779 (-137.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:33:02.148 -07 000000593 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30772, posNoise = 7, negNoise = 6
17-03-17 18:33:02.148 -07 000000593 INF: Z Motor: After move to -0.138000, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:02.148 -07 000000593 INF: Z Motor: Settle wait time = 1444 ms, measure time = 105 ms (allowed 150 ms), total time = 1549 ms
17-03-17 18:33:02.148 -07 000000593 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:33:02.198 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 18:33:02.198 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:33:02.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:02.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:02.198 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:02.198 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:02.198 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:33:02.198 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:02.198 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:33:02.198 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:33:02.208 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:33:02.208 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:33:02.218 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:33:02.218 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:33:02.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:33:02.258 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:33:02.458 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:33:02.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:33:02.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:33:02.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2432798312, 0x0, 559484976) start.
17-03-17 18:33:02.498 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:33:02.498 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 18:33:02.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 18:33:02.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2432798312, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:33:02.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:02.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:33:02.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:33:02.698 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:02.698 -07 000000012 INF: Autofocus start
17-03-17 18:33:02.698 -07 000000012 INF: MeasureProfile start
17-03-17 18:33:02.698 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:02.708 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:33:02.708 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:33:02.708 -07 000000012 INF: MeasureProfile done
17-03-17 18:33:02.708 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:33:02.708 -07 000000012 INF: Autofocus finished
17-03-17 18:33:02.908 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:33:02.908 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:33:02.908 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.138009208037403. ----------
17-03-17 18:33:02.908 -07 000000610 INF: Cycle	14	Tile	9	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:33:02.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28653, sync = True, waitForSettling = True)
17-03-17 18:33:02.918 -07 000000610 INF: Z Motor: Moving to -0.131165 mm, started at -0.138009 mm, distance = 6.84 um
17-03-17 18:33:02.918 -07 000000610 INF: FPGA: Xmit ZDACW 28653\n [Z Motor]
17-03-17 18:33:02.918 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:33:02.928 -07 000000610 INF: FPGA: 'ZDACW 28653' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:33:02.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:02.928 -07 000000618 INF: FPGA: Recv ZDACR 28653
17-03-17 18:33:02.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:02.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:33:03.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:03.088 -07 000000431 INF: FPGA: Recv ZSGSRD 29707
17-03-17 18:33:03.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:03.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:03.098 -07 000000593 INF: FPGA: Recv ZSGSRD 29714
17-03-17 18:33:03.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:03.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:03.108 -07 000000476 INF: FPGA: Recv ZSGSRD 29707
17-03-17 18:33:03.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:03.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:03.118 -07 000000012 INF: FPGA: Recv ZSGSRD 29706
17-03-17 18:33:03.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:03.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:03.128 -07 000000431 INF: FPGA: Recv ZSGSRD 29710
17-03-17 18:33:03.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:03.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:03.138 -07 000000415 INF: FPGA: Recv ZSGSRD 29709
17-03-17 18:33:03.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:03.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:03.148 -07 000000608 INF: FPGA: Recv ZSGSRD 29707
17-03-17 18:33:03.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:03.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:03.158 -07 000000424 INF: FPGA: Recv ZSGSRD 29712
17-03-17 18:33:03.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:03.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:03.168 -07 000000480 INF: FPGA: Recv ZSGSRD 29706
17-03-17 18:33:03.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:03.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:03.178 -07 000000482 INF: FPGA: Recv ZSGSRD 29710
17-03-17 18:33:03.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:03.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:03.188 -07 000000429 INF: FPGA: Recv ZPIEZORD 25213
17-03-17 18:33:03.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:03.198 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.9 V.
17-03-17 18:33:03.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29709 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29708 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29706 (-130.4 uncal um), Max = 29714 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:33:03.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29709, posNoise = 5, negNoise = 3
17-03-17 18:33:03.198 -07 000000610 INF: Z Motor: After move to -0.131165, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:03.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:33:03.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:03.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:03.198 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:03.198 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:03.198 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:33:03.198 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:03.198 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:33:03.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:33:03.198 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:03.198 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:33:03.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:33:03.198 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:33:03.208 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:33:03.208 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:33:03.208 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:33:03.208 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:33:03.218 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 18:33:03.218 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:33:03.218 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 18:33:03.218 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:33:03.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28830 150\n [Camera]
17-03-17 18:33:03.418 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:33:03.818 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:33:03.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:33:03.818 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:03.818 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:03.818 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 18:33:03.818 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:33:03.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:33:03.818 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:03.938 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:03.938 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 18:33:04.008 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28830 778
17-03-17 18:33:04.158 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:33:04.198 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 18:33:04.198 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 18:33:04.198 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:04.198 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:04.198 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:33:04.308 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 18:33:04.308 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 18:33:04.308 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:04.308 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:33:04.318 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-17 18:33:04.348 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:33:04.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:33:04.348 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:04.348 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:33:04.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:33:04.348 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:04.348 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:04.348 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 18:33:04.358 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:04.358 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:33:04.538 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:33:04.538 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:33:04.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28830 150' command took 2 ms to send, 1304 ms to get response, and 1316 ms overall
17-03-17 18:33:04.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:33:04.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5400390625, Z-Position -0.131180270530711. ------
17-03-17 18:33:04.548 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:04.548 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13790 mm
17-03-17 18:33:04.548 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:33:04.548 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:04.548 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 18:33:04.548 -07 000000012 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 18:33:04.548 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30124, sync = True, waitForSettling = False)
17-03-17 18:33:04.548 -07 000000424 INF: Z Motor: Moving to -0.137899 mm, started at -0.131180 mm, distance = -6.72 um
17-03-17 18:33:04.558 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:04.558 -07 000000424 INF: FPGA: Xmit ZDACW 30124\n [Z Motor]
17-03-17 18:33:04.558 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 18:33:04.568 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:04.568 -07 000000424 INF: FPGA: 'ZDACW 30124' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 18:33:04.568 -07 000000480 INF: FPGA: Recv YRDPOS 136274
17-03-17 18:33:04.578 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:33:04.578 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:33:04.578 -07 000000012 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:04.578 -07 000000012 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:33:04.578 -07 000000012 INF: Y Motor: Moving 1348 steps-26
17-03-17 18:33:04.588 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:04.588 -07 000000448 INF: FPGA: Recv ZDACR 30124
17-03-17 18:33:04.598 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:33:04.598 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:33:04.598 -07 000000424 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 18:33:04.728 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 18:33:04.728 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 18:33:04.728 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:04.728 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 18:33:04.728 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:33:04.728 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:04.738 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:33:04.738 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 18:33:04.738 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:33:04.738 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:33:04.778 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:33:04.778 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 18:33:04.968 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 18:33:04.968 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:33:04.998 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:05.008 -07 000000448 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:33:05.018 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:05.018 -07 000000012 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:05.018 -07 000000012 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 18:33:05.018 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 18:33:05.878 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.993549,
17-03-17 18:33:05.968 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:05.968 -07 000000476 INF: FPGA: Recv YRDPOS 137979
17-03-17 18:33:05.978 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:05.978 -07 000000012 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:05.998 -07 000000012 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:33:05.998 -07 000000012 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:33:05.998 -07 000000012 INF: Y Motor: Moved to 67.3726 after 1445 ms (table move)
17-03-17 18:33:05.998 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137899 mm (DAC = 30124)
17-03-17 18:33:05.998 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:05.998 -07 000000482 INF: FPGA: Recv ZSGSRD 30763
17-03-17 18:33:06.008 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:33:06.008 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.008 -07 000000593 INF: FPGA: Recv ZSGSRD 30754
17-03-17 18:33:06.018 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.018 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.018 -07 000000623 INF: FPGA: Recv ZSGSRD 30753
17-03-17 18:33:06.028 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.028 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.028 -07 000000608 INF: FPGA: Recv ZSGSRD 30751
17-03-17 18:33:06.038 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.038 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.038 -07 000000476 INF: FPGA: Recv ZSGSRD 30761
17-03-17 18:33:06.048 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.048 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.048 -07 000000478 INF: FPGA: Recv ZSGSRD 30759
17-03-17 18:33:06.058 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.058 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.058 -07 000000429 INF: FPGA: Recv ZSGSRD 30759
17-03-17 18:33:06.068 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.068 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.068 -07 000000501 INF: FPGA: Recv ZSGSRD 30757
17-03-17 18:33:06.078 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.078 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.078 -07 000000448 INF: FPGA: Recv ZSGSRD 30752
17-03-17 18:33:06.088 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.088 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.088 -07 000000480 INF: FPGA: Recv ZSGSRD 30754
17-03-17 18:33:06.098 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.098 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:06.098 -07 000000415 INF: FPGA: Recv ZPIEZORD 26614
17-03-17 18:33:06.108 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.108 -07 000000618 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -9.1 V.
17-03-17 18:33:06.108 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30756 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30756 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30751 (-137.1 uncal um), Max = 30763 (-137.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:33:06.108 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30756, posNoise = 7, negNoise = 5
17-03-17 18:33:06.108 -07 000000618 INF: Z Motor: After move to -0.137899, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:06.108 -07 000000618 INF: Z Motor: Settle wait time = 1448 ms, measure time = 106 ms (allowed 150 ms), total time = 1554 ms
17-03-17 18:33:06.108 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:33:06.158 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 18:33:06.158 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:33:06.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:06.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:06.158 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:06.158 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:06.158 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:33:06.158 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:06.158 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:06.158 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:33:06.168 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:33:06.168 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:33:06.168 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:33:06.168 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 18:33:06.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:33:06.218 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:33:06.418 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:33:06.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:33:06.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:33:06.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-17 18:33:06.458 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:33:06.458 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 18:33:06.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 18:33:06.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 18:33:06.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:06.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:33:06.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 18:33:06.558 -07 000000608 INF: Autofocus start
17-03-17 18:33:06.558 -07 000000608 INF: MeasureProfile start
17-03-17 18:33:06.558 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:06.558 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:06.568 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:33:06.568 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:33:06.568 -07 000000608 INF: MeasureProfile done
17-03-17 18:33:06.568 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:33:06.568 -07 000000608 INF: Autofocus finished
17-03-17 18:33:06.598 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:33:06.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:33:06.768 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:33:06.768 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:33:06.768 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137906420643135. ----------
17-03-17 18:33:06.768 -07 000000610 INF: Cycle	14	Tile	10	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:33:06.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28648, sync = True, waitForSettling = True)
17-03-17 18:33:06.778 -07 000000610 INF: Z Motor: Moving to -0.131142 mm, started at -0.137906 mm, distance = 6.76 um
17-03-17 18:33:06.778 -07 000000610 INF: FPGA: Xmit ZDACW 28648\n [Z Motor]
17-03-17 18:33:06.778 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:33:06.788 -07 000000610 INF: FPGA: 'ZDACW 28648' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:06.788 -07 000000593 INF: FPGA: Recv ZDACR 28648
17-03-17 18:33:06.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:33:06.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.948 -07 000000512 INF: FPGA: Recv ZSGSRD 29709
17-03-17 18:33:06.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:06.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.958 -07 000000431 INF: FPGA: Recv ZSGSRD 29703
17-03-17 18:33:06.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.968 -07 000000608 INF: FPGA: Recv ZSGSRD 29701
17-03-17 18:33:06.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.978 -07 000000501 INF: FPGA: Recv ZSGSRD 29707
17-03-17 18:33:06.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.988 -07 000000424 INF: FPGA: Recv ZSGSRD 29705
17-03-17 18:33:06.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:06.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:06.998 -07 000000476 INF: FPGA: Recv ZSGSRD 29706
17-03-17 18:33:07.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:07.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:07.008 -07 000000623 INF: FPGA: Recv ZSGSRD 29706
17-03-17 18:33:07.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:07.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:07.018 -07 000000478 INF: FPGA: Recv ZSGSRD 29704
17-03-17 18:33:07.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:07.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:07.028 -07 000000501 INF: FPGA: Recv ZSGSRD 29706
17-03-17 18:33:07.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:07.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:07.038 -07 000000480 INF: FPGA: Recv ZSGSRD 29700
17-03-17 18:33:07.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:07.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:07.048 -07 000000512 INF: FPGA: Recv ZPIEZORD 25237
17-03-17 18:33:07.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:07.058 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.8 V.
17-03-17 18:33:07.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29705 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29706 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29700 (-130.3 uncal um), Max = 29709 (-130.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:33:07.058 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29705, posNoise = 4, negNoise = 5
17-03-17 18:33:07.058 -07 000000610 INF: Z Motor: After move to -0.131142, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:07.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:33:07.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:07.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:07.058 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:07.058 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:07.058 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:33:07.058 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:07.058 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:33:07.058 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:33:07.058 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:07.058 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:33:07.058 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:33:07.058 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:33:07.058 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:33:07.058 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:33:07.068 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:33:07.068 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:33:07.078 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:33:07.078 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:33:07.078 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:33:07.078 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:33:07.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28825 150\n [Camera]
17-03-17 18:33:07.278 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:33:07.678 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:33:07.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:33:07.678 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:07.678 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:07.678 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 18:33:07.678 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:33:07.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:33:07.678 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:07.678 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:07.678 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 18:33:07.868 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28825 778
17-03-17 18:33:08.018 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:33:08.078 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 18:33:08.078 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:33:08.078 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:08.078 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:33:08.078 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:33:08.078 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:08.078 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:33:08.078 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:08.088 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:08.088 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 18:33:08.208 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:33:08.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:33:08.208 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:08.208 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:08.208 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 18:33:08.208 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:33:08.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:33:08.208 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:08.208 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:08.208 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:33:08.398 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:33:08.398 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:33:08.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28825 150' command took 2 ms to send, 1307 ms to get response, and 1317 ms overall
17-03-17 18:33:08.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:33:08.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.131154573682144. ------
17-03-17 18:33:08.408 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:08.408 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13754 mm
17-03-17 18:33:08.408 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:33:08.408 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 18:33:08.408 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 30045, sync = True, waitForSettling = False)
17-03-17 18:33:08.408 -07 000000476 INF: Z Motor: Moving to -0.137537 mm, started at -0.131155 mm, distance = -6.38 um
17-03-17 18:33:08.408 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:08.408 -07 000000478 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 18:33:08.418 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:33:08.418 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:08.418 -07 000000429 INF: FPGA: Recv YRDPOS 137980
17-03-17 18:33:08.428 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:33:08.428 -07 000000478 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:08.428 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:33:08.428 -07 000000478 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:33:08.428 -07 000000478 INF: Y Motor: Moving 1343 steps-21
17-03-17 18:33:08.438 -07 000000476 INF: FPGA: Xmit ZDACW 30045\n [Z Motor]
17-03-17 18:33:08.438 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:33:08.448 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:33:08.448 -07 000000476 INF: FPGA: 'ZDACW 30045' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 18:33:08.458 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:08.458 -07 000000623 INF: FPGA: Recv ZDACR 30045
17-03-17 18:33:08.468 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:33:08.468 -07 000000476 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 18:33:08.608 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:33:08.608 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 18:33:08.608 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:08.618 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 18:33:08.618 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 18:33:08.618 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:08.618 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:08.618 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:33:08.618 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 18:33:08.628 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:33:08.628 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:33:08.628 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 18:33:08.818 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:33:08.818 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 18:33:08.858 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:08.858 -07 000000448 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:33:08.868 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:08.868 -07 000000478 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:08.868 -07 000000478 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 18:33:08.868 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-17 18:33:09.818 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:09.818 -07 000000415 INF: FPGA: Recv YRDPOS 139685
17-03-17 18:33:09.828 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:09.828 -07 000000478 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:09.838 -07 000000478 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:33:09.838 -07 000000478 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:33:09.838 -07 000000478 INF: Y Motor: Moved to 68.2056 after 1431 ms (table move)
17-03-17 18:33:09.848 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137537 mm (DAC = 30045)
17-03-17 18:33:09.848 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:09.848 -07 000000448 INF: FPGA: Recv ZSGSRD 30704
17-03-17 18:33:09.858 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:33:09.858 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:09.858 -07 000000012 INF: FPGA: Recv ZSGSRD 30692
17-03-17 18:33:09.868 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:09.868 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:09.868 -07 000000431 INF: FPGA: Recv ZSGSRD 30699
17-03-17 18:33:09.878 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:09.878 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:09.878 -07 000000608 INF: FPGA: Recv ZSGSRD 30704
17-03-17 18:33:09.888 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:09.888 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:09.888 -07 000000429 INF: FPGA: Recv ZSGSRD 30712
17-03-17 18:33:09.898 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:09.898 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:09.898 -07 000000476 INF: FPGA: Recv ZSGSRD 30694
17-03-17 18:33:09.908 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:09.908 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:09.908 -07 000000618 INF: FPGA: Recv ZSGSRD 30693
17-03-17 18:33:09.918 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:09.918 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:09.918 -07 000000431 INF: FPGA: Recv ZSGSRD 30695
17-03-17 18:33:09.928 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:09.928 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:09.928 -07 000000415 INF: FPGA: Recv ZSGSRD 30693
17-03-17 18:33:09.938 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:09.938 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:09.938 -07 000000482 INF: FPGA: Recv ZSGSRD 30704
17-03-17 18:33:09.948 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:09.948 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:09.948 -07 000000415 INF: FPGA: Recv ZPIEZORD 26588
17-03-17 18:33:09.958 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:09.958 -07 000000593 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.585 V. Piezo Error = -9.0 V.
17-03-17 18:33:09.958 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30699 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30697 (-136.7 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30692 (-136.7 uncal um), Max = 30712 (-136.8 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:33:09.958 -07 000000593 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30699, posNoise = 13, negNoise = 7
17-03-17 18:33:09.958 -07 000000593 INF: Z Motor: After move to -0.137537, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:09.958 -07 000000593 INF: Z Motor: Settle wait time = 1434 ms, measure time = 109 ms (allowed 150 ms), total time = 1543 ms
17-03-17 18:33:09.958 -07 000000593 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 18:33:10.008 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 18:33:10.008 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:33:10.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:10.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:10.008 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:10.008 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:10.008 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:33:10.008 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:10.008 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:10.008 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:33:10.018 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:33:10.018 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:33:10.028 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:33:10.028 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:33:10.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:33:10.078 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 18:33:10.278 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 18:33:10.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 18:33:10.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:33:10.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) start.
17-03-17 18:33:10.308 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:33:10.308 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 18:33:10.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 18:33:10.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:33:10.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:10.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:33:10.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:33:10.508 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:10.508 -07 000000429 INF: Autofocus start
17-03-17 18:33:10.508 -07 000000429 INF: MeasureProfile start
17-03-17 18:33:10.508 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:10.518 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:33:10.518 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:33:10.528 -07 000000429 INF: MeasureProfile done
17-03-17 18:33:10.528 -07 000000429 INF: X=-96  Z correction [um]=-0.4707136
17-03-17 18:33:10.528 -07 000000429 INF: Autofocus finished
17-03-17 18:33:10.718 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:33:10.718 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:33:10.718 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137540240551055. ----------
17-03-17 18:33:10.718 -07 000000610 INF: Cycle	14	Tile	11	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:33:10.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28455, sync = True, waitForSettling = True)
17-03-17 18:33:10.728 -07 000000610 INF: Z Motor: Moving to -0.130259 mm, started at -0.137540 mm, distance = 7.28 um
17-03-17 18:33:10.728 -07 000000610 INF: FPGA: Xmit ZDACW 28455\n [Z Motor]
17-03-17 18:33:10.728 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:33:10.738 -07 000000610 INF: FPGA: 'ZDACW 28455' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:10.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:10.738 -07 000000431 INF: FPGA: Recv ZDACR 28455
17-03-17 18:33:10.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:10.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:33:10.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:10.898 -07 000000478 INF: FPGA: Recv ZSGSRD 29569
17-03-17 18:33:10.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:10.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:10.908 -07 000000512 INF: FPGA: Recv ZSGSRD 29573
17-03-17 18:33:10.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:10.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:10.918 -07 000000476 INF: FPGA: Recv ZSGSRD 29561
17-03-17 18:33:10.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:10.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:10.938 -07 000000012 INF: FPGA: Recv ZSGSRD 29572
17-03-17 18:33:10.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:33:10.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:10.948 -07 000000429 INF: FPGA: Recv ZSGSRD 29565
17-03-17 18:33:10.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:10.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:10.958 -07 000000478 INF: FPGA: Recv ZSGSRD 29570
17-03-17 18:33:10.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:10.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:10.968 -07 000000501 INF: FPGA: Recv ZSGSRD 29564
17-03-17 18:33:10.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:10.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:10.978 -07 000000012 INF: FPGA: Recv ZSGSRD 29564
17-03-17 18:33:10.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:10.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:10.988 -07 000000448 INF: FPGA: Recv ZSGSRD 29565
17-03-17 18:33:10.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:10.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:10.998 -07 000000482 INF: FPGA: Recv ZSGSRD 29561
17-03-17 18:33:11.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:11.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:11.008 -07 000000608 INF: FPGA: Recv ZPIEZORD 25127
17-03-17 18:33:11.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:11.018 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.342 V. Piezo Error = -9.7 V.
17-03-17 18:33:11.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29566 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29565 (-129.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29561 (-129.5 uncal um), Max = 29573 (-129.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:33:11.018 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29566, posNoise = 7, negNoise = 5
17-03-17 18:33:11.018 -07 000000610 INF: Z Motor: After move to -0.130259, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:11.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 18:33:11.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:11.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:11.018 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:11.018 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:11.018 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:33:11.018 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:11.018 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:33:11.018 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:33:11.018 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:11.018 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:33:11.018 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:33:11.018 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:33:11.018 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:33:11.018 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:33:11.028 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:33:11.028 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:33:11.028 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 18:33:11.028 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:33:11.038 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 18:33:11.038 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 18:33:11.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28632 150\n [Camera]
17-03-17 18:33:11.238 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:33:11.248 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.98264,
17-03-17 18:33:11.598 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:33:11.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:33:11.628 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:33:11.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:33:11.628 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:11.628 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:11.628 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:33:11.628 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:33:11.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:33:11.628 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:11.628 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:11.628 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:33:11.818 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28632 778
17-03-17 18:33:11.978 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-17 18:33:12.028 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 18:33:12.028 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:33:12.028 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:12.028 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 18:33:12.028 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:33:12.028 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:12.028 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:12.028 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:33:12.028 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:12.038 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:33:12.158 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:33:12.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:33:12.158 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:12.158 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:12.158 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:33:12.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:33:12.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:33:12.168 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:12.168 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:12.168 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:33:12.348 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:33:12.348 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:33:12.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28632 150' command took 2 ms to send, 1309 ms to get response, and 1316 ms overall
17-03-17 18:33:12.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:33:12.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130261608194439. ------
17-03-17 18:33:12.358 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:12.358 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13683 mm
17-03-17 18:33:12.358 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:33:12.358 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 18:33:12.358 -07 000000448 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 18:33:12.358 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29891, sync = True, waitForSettling = False)
17-03-17 18:33:12.358 -07 000000429 INF: Z Motor: Moving to -0.136832 mm, started at -0.130262 mm, distance = -6.57 um
17-03-17 18:33:12.358 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:12.368 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:33:12.368 -07 000000429 INF: FPGA: Xmit ZDACW 29891\n [Z Motor]
17-03-17 18:33:12.488 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:33:12.488 -07 000000429 INF: FPGA: 'ZDACW 29891' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 18:33:12.488 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:33:12.498 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:12.498 -07 000000415 INF: FPGA: Recv YRDPOS 139686
17-03-17 18:33:12.508 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:12.508 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 143 ms overall
17-03-17 18:33:12.508 -07 000000448 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:12.508 -07 000000415 INF: FPGA: Recv ZDACR 29891
17-03-17 18:33:12.508 -07 000000448 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:33:12.508 -07 000000448 INF: Y Motor: Moving 1338 steps-14
17-03-17 18:33:12.518 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 18:33:12.518 -07 000000429 INF: Z Motor: MoveAbsStepped took 153 ms (did NOT wait for settling yet))
17-03-17 18:33:12.518 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:33:12.568 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:33:12.568 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:33:12.568 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:12.568 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 18:33:12.568 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 18:33:12.568 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:12.568 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:33:12.578 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:33:12.578 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 18:33:12.578 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 18:33:12.688 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:33:12.688 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 323 ms overall
17-03-17 18:33:12.888 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:33:12.888 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 18:33:12.928 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:12.928 -07 000000480 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:33:12.938 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:33:12.938 -07 000000448 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:12.938 -07 000000448 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 18:33:12.938 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-17 18:33:13.888 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:13.888 -07 000000501 INF: FPGA: Recv YRDPOS 141369
17-03-17 18:33:13.898 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:13.898 -07 000000448 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:13.908 -07 000000448 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:33:13.918 -07 000000448 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:33:13.918 -07 000000448 INF: Y Motor: Moved to 69.0278 after 1553 ms (table move)
17-03-17 18:33:13.918 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136832 mm (DAC = 29891)
17-03-17 18:33:13.918 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:13.918 -07 000000618 INF: FPGA: Recv ZSGSRD 30596
17-03-17 18:33:13.928 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:33:13.928 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:13.928 -07 000000482 INF: FPGA: Recv ZSGSRD 30588
17-03-17 18:33:13.938 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:13.938 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:13.938 -07 000000478 INF: FPGA: Recv ZSGSRD 30591
17-03-17 18:33:13.948 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:13.948 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:13.948 -07 000000593 INF: FPGA: Recv ZSGSRD 30590
17-03-17 18:33:13.958 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:13.958 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:13.958 -07 000000424 INF: FPGA: Recv ZSGSRD 30594
17-03-17 18:33:13.968 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:13.968 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:13.968 -07 000000618 INF: FPGA: Recv ZSGSRD 30590
17-03-17 18:33:13.978 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:13.978 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:13.978 -07 000000448 INF: FPGA: Recv ZSGSRD 30592
17-03-17 18:33:13.988 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:13.988 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:13.988 -07 000000476 INF: FPGA: Recv ZSGSRD 30583
17-03-17 18:33:13.998 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:13.998 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:13.998 -07 000000480 INF: FPGA: Recv ZSGSRD 30584
17-03-17 18:33:14.008 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:14.008 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:14.008 -07 000000618 INF: FPGA: Recv ZSGSRD 30589
17-03-17 18:33:14.018 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:14.018 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:14.018 -07 000000482 INF: FPGA: Recv ZPIEZORD 26478
17-03-17 18:33:14.028 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:14.028 -07 000000608 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.561 V. Piezo Error = -9.0 V.
17-03-17 18:33:14.028 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30590 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30590 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30583 (-136.0 uncal um), Max = 30596 (-136.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:33:14.028 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30590, posNoise = 6, negNoise = 7
17-03-17 18:33:14.028 -07 000000608 INF: Z Motor: After move to -0.136832, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:14.028 -07 000000608 INF: Z Motor: Settle wait time = 1557 ms, measure time = 106 ms (allowed 150 ms), total time = 1663 ms
17-03-17 18:33:14.028 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:33:14.078 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1716 ms
17-03-17 18:33:14.078 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:33:14.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:14.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:14.078 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:14.078 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:14.078 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:33:14.078 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:14.088 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:14.088 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:33:14.088 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:33:14.088 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:33:14.098 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 18:33:14.098 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 18:33:14.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:33:14.148 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 18:33:14.348 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:33:14.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:33:14.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:33:14.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:33:14.378 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:33:14.388 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:33:14.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:33:14.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:33:14.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:14.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:33:14.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:33:14.488 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:14.488 -07 000000478 INF: Autofocus start
17-03-17 18:33:14.488 -07 000000478 INF: MeasureProfile start
17-03-17 18:33:14.488 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:14.498 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:33:14.498 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:33:14.498 -07 000000478 INF: MeasureProfile done
17-03-17 18:33:14.498 -07 000000478 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:33:14.498 -07 000000478 INF: Autofocus finished
17-03-17 18:33:14.698 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:33:14.698 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:33:14.698 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.136840001427603. ----------
17-03-17 18:33:14.698 -07 000000610 INF: Cycle	14	Tile	12	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:33:14.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28415, sync = True, waitForSettling = True)
17-03-17 18:33:14.708 -07 000000610 INF: Z Motor: Moving to -0.130076 mm, started at -0.136840 mm, distance = 6.76 um
17-03-17 18:33:14.708 -07 000000610 INF: FPGA: Xmit ZDACW 28415\n [Z Motor]
17-03-17 18:33:14.708 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 18:33:14.718 -07 000000610 INF: FPGA: 'ZDACW 28415' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:33:14.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:14.718 -07 000000512 INF: FPGA: Recv ZDACR 28415
17-03-17 18:33:14.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:14.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:33:14.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:14.878 -07 000000415 INF: FPGA: Recv ZSGSRD 29541
17-03-17 18:33:14.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:14.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:14.888 -07 000000618 INF: FPGA: Recv ZSGSRD 29542
17-03-17 18:33:14.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:14.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:14.898 -07 000000501 INF: FPGA: Recv ZSGSRD 29540
17-03-17 18:33:14.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:14.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:14.908 -07 000000480 INF: FPGA: Recv ZSGSRD 29536
17-03-17 18:33:14.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:14.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:14.918 -07 000000593 INF: FPGA: Recv ZSGSRD 29537
17-03-17 18:33:14.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:14.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:14.928 -07 000000608 INF: FPGA: Recv ZSGSRD 29544
17-03-17 18:33:14.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:14.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:14.938 -07 000000012 INF: FPGA: Recv ZSGSRD 29536
17-03-17 18:33:14.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:14.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:14.948 -07 000000480 INF: FPGA: Recv ZSGSRD 29536
17-03-17 18:33:14.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:14.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:14.958 -07 000000429 INF: FPGA: Recv ZSGSRD 29539
17-03-17 18:33:14.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:14.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:14.968 -07 000000424 INF: FPGA: Recv ZSGSRD 29535
17-03-17 18:33:14.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:14.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:14.978 -07 000000618 INF: FPGA: Recv ZPIEZORD 25062
17-03-17 18:33:14.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:14.988 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -9.8 V.
17-03-17 18:33:14.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29539 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29538 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29535 (-129.3 uncal um), Max = 29544 (-129.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 18:33:14.988 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29539, posNoise = 5, negNoise = 4
17-03-17 18:33:14.988 -07 000000610 INF: Z Motor: After move to -0.130076, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:14.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:33:14.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:14.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:14.988 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:14.988 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:14.988 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:33:14.988 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:33:14.988 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:33:14.988 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:14.988 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:33:14.988 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:33:14.988 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:14.988 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:33:14.998 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:33:14.998 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:33:14.998 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:33:14.998 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:33:15.008 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:33:15.008 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:33:15.008 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:33:15.008 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:33:15.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28592 150\n [Camera]
17-03-17 18:33:15.208 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:33:15.608 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:33:15.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:33:15.608 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:15.608 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:33:15.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:33:15.608 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:15.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 18:33:15.608 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:15.618 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:15.618 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:33:15.798 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28592 778
17-03-17 18:33:15.948 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 929
17-03-17 18:33:16.008 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 18:33:16.008 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:33:16.008 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:16.008 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:16.008 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:33:16.008 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:33:16.008 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 18:33:16.008 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:16.018 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:16.018 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:33:16.138 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:33:16.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:33:16.138 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:16.138 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:33:16.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:33:16.138 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:16.258 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:16.258 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:33:16.268 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:16.268 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:33:16.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:33:16.328 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:33:16.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28592 150' command took 2 ms to send, 1305 ms to get response, and 1316 ms overall
17-03-17 18:33:16.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:33:16.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.130088154466612. ------
17-03-17 18:33:16.338 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13651 mm
17-03-17 18:33:16.338 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:33:16.338 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:16.338 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 18:33:16.338 -07 000000476 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 18:33:16.338 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29821, sync = True, waitForSettling = False)
17-03-17 18:33:16.338 -07 000000623 INF: Z Motor: Moving to -0.136512 mm, started at -0.130088 mm, distance = -6.42 um
17-03-17 18:33:16.338 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:16.348 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:33:16.348 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:16.348 -07 000000501 INF: FPGA: Recv YRDPOS 141370
17-03-17 18:33:16.358 -07 000000623 INF: FPGA: Xmit ZDACW 29821\n [Z Motor]
17-03-17 18:33:16.358 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 18:33:16.358 -07 000000476 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:16.358 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:33:16.358 -07 000000476 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:33:16.358 -07 000000476 INF: Y Motor: Moving 1351 steps-30
17-03-17 18:33:16.368 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:33:16.368 -07 000000623 INF: FPGA: 'ZDACW 29821' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 18:33:16.378 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:33:16.388 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:16.388 -07 000000482 INF: FPGA: Recv ZDACR 29821
17-03-17 18:33:16.398 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:33:16.398 -07 000000623 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 18:33:16.568 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:33:16.568 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:33:16.598 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:33:16.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:33:16.618 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.993549,
17-03-17 18:33:16.638 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 18:33:16.638 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 18:33:16.638 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:16.638 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 18:33:16.638 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 18:33:16.638 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:16.638 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:16.648 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:16.648 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 18:33:16.648 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 18:33:16.748 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 18:33:16.748 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:33:16.788 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:16.788 -07 000000482 INF: FPGA: Recv YRDPOS 143081
17-03-17 18:33:16.798 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:33:16.798 -07 000000476 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:16.798 -07 000000476 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 18:33:16.798 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.161 mm/sec
17-03-17 18:33:17.748 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:17.748 -07 000000448 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:33:17.758 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:17.758 -07 000000476 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:17.778 -07 000000476 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:33:17.778 -07 000000476 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:33:17.778 -07 000000476 INF: Y Motor: Moved to 69.8643 after 1435 ms (table move)
17-03-17 18:33:17.778 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136512 mm (DAC = 29821)
17-03-17 18:33:17.778 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:17.778 -07 000000438 INF: FPGA: Recv ZSGSRD 30543
17-03-17 18:33:17.788 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:33:17.788 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:17.788 -07 000000480 INF: FPGA: Recv ZSGSRD 30538
17-03-17 18:33:17.798 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:17.798 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:17.798 -07 000000593 INF: FPGA: Recv ZSGSRD 30533
17-03-17 18:33:17.808 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:17.808 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:17.808 -07 000000429 INF: FPGA: Recv ZSGSRD 30543
17-03-17 18:33:17.818 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:17.818 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:17.818 -07 000000608 INF: FPGA: Recv ZSGSRD 30541
17-03-17 18:33:17.828 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:17.828 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:17.828 -07 000000593 INF: FPGA: Recv ZSGSRD 30547
17-03-17 18:33:17.838 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:17.838 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:17.838 -07 000000431 INF: FPGA: Recv ZSGSRD 30540
17-03-17 18:33:17.848 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:17.848 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:17.848 -07 000000480 INF: FPGA: Recv ZSGSRD 30539
17-03-17 18:33:17.858 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:17.858 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:17.858 -07 000000424 INF: FPGA: Recv ZSGSRD 30537
17-03-17 18:33:17.868 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:17.868 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:17.868 -07 000000482 INF: FPGA: Recv ZSGSRD 30535
17-03-17 18:33:17.878 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:17.878 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:17.878 -07 000000429 INF: FPGA: Recv ZPIEZORD 26425
17-03-17 18:33:17.888 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:17.888 -07 000000415 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.550 V. Piezo Error = -9.1 V.
17-03-17 18:33:17.888 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30540 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30540 (-135.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30533 (-135.7 uncal um), Max = 30547 (-135.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:33:17.888 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30540, posNoise = 7, negNoise = 7
17-03-17 18:33:17.888 -07 000000415 INF: Z Motor: After move to -0.136512, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:17.888 -07 000000415 INF: Z Motor: Settle wait time = 1439 ms, measure time = 106 ms (allowed 150 ms), total time = 1545 ms
17-03-17 18:33:17.888 -07 000000415 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:33:17.938 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 18:33:17.938 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:33:17.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:17.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:17.938 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:17.938 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:17.938 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:33:17.938 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:17.938 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:17.938 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:33:17.948 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:33:17.948 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:33:17.958 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:33:17.958 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 18:33:17.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:33:18.008 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:33:18.208 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:33:18.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:33:18.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:33:18.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 18:33:18.248 -07 000000476 INF: FPGA: Recv @CAMSNAP 282
17-03-17 18:33:18.248 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 18:33:18.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 18:33:18.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:33:18.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:18.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:33:18.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:33:18.348 -07 000000618 INF: Autofocus start
17-03-17 18:33:18.348 -07 000000618 INF: MeasureProfile start
17-03-17 18:33:18.348 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:18.348 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:18.358 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:33:18.358 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:33:18.358 -07 000000618 INF: MeasureProfile done
17-03-17 18:33:18.358 -07 000000618 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:33:18.358 -07 000000618 INF: Autofocus finished
17-03-17 18:33:18.558 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:33:18.558 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:33:18.558 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.136518790820515. ----------
17-03-17 18:33:18.558 -07 000000610 INF: Cycle	14	Tile	13	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:33:18.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28316, sync = True, waitForSettling = True)
17-03-17 18:33:18.568 -07 000000610 INF: Z Motor: Moving to -0.129622 mm, started at -0.136519 mm, distance = 6.90 um
17-03-17 18:33:18.568 -07 000000610 INF: FPGA: Xmit ZDACW 28316\n [Z Motor]
17-03-17 18:33:18.568 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 18:33:18.578 -07 000000610 INF: FPGA: 'ZDACW 28316' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:33:18.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:18.578 -07 000000429 INF: FPGA: Recv ZDACR 28316
17-03-17 18:33:18.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:18.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:33:18.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:18.738 -07 000000512 INF: FPGA: Recv ZSGSRD 29470
17-03-17 18:33:18.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:18.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:18.748 -07 000000431 INF: FPGA: Recv ZSGSRD 29465
17-03-17 18:33:18.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:18.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:18.758 -07 000000462 INF: FPGA: Recv ZSGSRD 29465
17-03-17 18:33:18.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:18.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:18.768 -07 000000618 INF: FPGA: Recv ZSGSRD 29471
17-03-17 18:33:18.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:18.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:18.778 -07 000000424 INF: FPGA: Recv ZSGSRD 29466
17-03-17 18:33:18.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:18.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:18.788 -07 000000482 INF: FPGA: Recv ZSGSRD 29464
17-03-17 18:33:18.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:18.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:18.798 -07 000000431 INF: FPGA: Recv ZSGSRD 29470
17-03-17 18:33:18.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:18.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:18.808 -07 000000438 INF: FPGA: Recv ZSGSRD 29464
17-03-17 18:33:18.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:18.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:18.818 -07 000000623 INF: FPGA: Recv ZSGSRD 29465
17-03-17 18:33:18.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:18.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:18.828 -07 000000012 INF: FPGA: Recv ZSGSRD 29464
17-03-17 18:33:18.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:18.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:18.838 -07 000000608 INF: FPGA: Recv ZPIEZORD 25026
17-03-17 18:33:18.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:18.848 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -9.7 V.
17-03-17 18:33:18.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29466 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29465 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29464 (-128.8 uncal um), Max = 29471 (-128.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 18:33:18.848 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29466, posNoise = 5, negNoise = 2
17-03-17 18:33:18.848 -07 000000610 INF: Z Motor: After move to -0.129622, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:18.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:33:18.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:18.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:18.848 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:18.848 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:18.848 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:33:18.848 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:18.848 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:33:18.848 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:33:18.848 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:33:18.848 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:33:18.848 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:33:18.848 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:33:18.858 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:33:18.858 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:33:18.858 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:33:18.858 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:33:18.868 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 18:33:18.868 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:33:18.868 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 18:33:18.868 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 18:33:18.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28493 150\n [Camera]
17-03-17 18:33:19.068 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:33:19.458 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:33:19.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:33:19.468 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:19.468 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:33:19.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:33:19.468 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:19.468 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:33:19.468 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:19.468 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:19.468 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:33:19.658 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28493 778
17-03-17 18:33:19.808 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:33:19.868 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 18:33:19.868 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 18:33:19.868 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:19.868 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 18:33:19.868 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 18:33:19.868 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:19.868 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:19.868 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 18:33:19.868 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:19.878 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:33:19.998 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:33:19.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:33:19.998 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:19.998 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:19.998 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) start.
17-03-17 18:33:19.998 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:33:19.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:33:19.998 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:19.998 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:19.998 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 18:33:20.188 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:33:20.188 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:33:20.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28493 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-17 18:33:20.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:33:20.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8642578125, Z-Position -0.129619186980263. ------
17-03-17 18:33:20.188 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:20.188 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13610 mm
17-03-17 18:33:20.188 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:33:20.198 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:20.198 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:33:20.198 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:33:20.198 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 18:33:20.198 -07 000000476 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 18:33:20.198 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29731, sync = True, waitForSettling = False)
17-03-17 18:33:20.198 -07 000000448 INF: Z Motor: Moving to -0.136100 mm, started at -0.129619 mm, distance = -6.48 um
17-03-17 18:33:20.208 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:20.208 -07 000000431 INF: FPGA: Recv YRDPOS 143082
17-03-17 18:33:20.218 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:33:20.218 -07 000000448 INF: FPGA: Xmit ZDACW 29731\n [Z Motor]
17-03-17 18:33:20.218 -07 000000476 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:20.218 -07 000000476 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:33:20.218 -07 000000476 INF: Y Motor: Moving 1341 steps-18
17-03-17 18:33:20.218 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 18:33:20.228 -07 000000448 INF: FPGA: 'ZDACW 29731' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:33:20.228 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:20.228 -07 000000438 INF: FPGA: Recv ZDACR 29731
17-03-17 18:33:20.238 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:33:20.238 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:20.238 -07 000000448 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 18:33:20.378 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:33:20.378 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:33:20.378 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:20.388 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:20.388 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:33:20.388 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:33:20.388 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:20.388 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:33:20.398 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:33:20.398 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 18:33:20.398 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:33:20.398 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 18:33:20.608 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 18:33:20.608 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:33:20.648 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:20.648 -07 000000431 INF: FPGA: Recv YRDPOS 144771
17-03-17 18:33:20.658 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:20.658 -07 000000476 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:20.658 -07 000000476 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:33:20.658 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.112 mm/sec
17-03-17 18:33:21.598 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:33:21.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:33:21.608 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:21.608 -07 000000618 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:33:21.618 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:21.618 -07 000000476 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:21.638 -07 000000476 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:33:21.638 -07 000000476 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:33:21.638 -07 000000476 INF: Y Motor: Moved to 70.6895 after 1439 ms (table move)
17-03-17 18:33:21.638 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136100 mm (DAC = 29731)
17-03-17 18:33:21.638 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:21.638 -07 000000462 INF: FPGA: Recv ZSGSRD 30476
17-03-17 18:33:21.648 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:33:21.648 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:21.648 -07 000000448 INF: FPGA: Recv ZSGSRD 30479
17-03-17 18:33:21.658 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:21.658 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:21.658 -07 000000012 INF: FPGA: Recv ZSGSRD 30468
17-03-17 18:33:21.668 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:21.678 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:21.678 -07 000000618 INF: FPGA: Recv ZSGSRD 30478
17-03-17 18:33:21.688 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:33:21.688 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:21.688 -07 000000482 INF: FPGA: Recv ZSGSRD 30482
17-03-17 18:33:21.698 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:21.698 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:21.698 -07 000000438 INF: FPGA: Recv ZSGSRD 30482
17-03-17 18:33:21.708 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:21.708 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:21.708 -07 000000431 INF: FPGA: Recv ZSGSRD 30477
17-03-17 18:33:21.718 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:21.718 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:21.718 -07 000000480 INF: FPGA: Recv ZSGSRD 30481
17-03-17 18:33:21.728 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:21.728 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:21.728 -07 000000415 INF: FPGA: Recv ZSGSRD 30469
17-03-17 18:33:21.738 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:21.738 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:21.738 -07 000000623 INF: FPGA: Recv ZSGSRD 30475
17-03-17 18:33:21.748 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:21.748 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:21.748 -07 000000593 INF: FPGA: Recv ZPIEZORD 26304
17-03-17 18:33:21.758 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:21.758 -07 000000512 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.537 V. Piezo Error = -9.2 V.
17-03-17 18:33:21.758 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30477 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30478 (-135.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30468 (-135.3 uncal um), Max = 30482 (-135.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 18:33:21.758 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30477, posNoise = 5, negNoise = 9
17-03-17 18:33:21.758 -07 000000512 INF: Z Motor: After move to -0.136100, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:21.758 -07 000000512 INF: Z Motor: Settle wait time = 1442 ms, measure time = 115 ms (allowed 150 ms), total time = 1557 ms
17-03-17 18:33:21.758 -07 000000512 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 18:33:21.798 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 18:33:21.798 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:33:21.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:21.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:21.798 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:21.798 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:21.798 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:33:21.798 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:21.798 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:21.798 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:33:21.808 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:33:21.808 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:33:21.818 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:33:21.818 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:33:21.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:33:21.868 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:33:21.988 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.997626,
17-03-17 18:33:22.068 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:33:22.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:33:22.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:33:22.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 18:33:22.098 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:33:22.108 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 18:33:22.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 18:33:22.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:33:22.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:22.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:33:22.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:33:22.208 -07 000000012 INF: Autofocus start
17-03-17 18:33:22.208 -07 000000012 INF: MeasureProfile start
17-03-17 18:33:22.208 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:22.208 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:22.218 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:33:22.218 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:33:22.218 -07 000000012 INF: MeasureProfile done
17-03-17 18:33:22.218 -07 000000012 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:33:22.218 -07 000000012 INF: Autofocus finished
17-03-17 18:33:22.418 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:33:22.418 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:33:22.418 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.136114065455584. ----------
17-03-17 18:33:22.418 -07 000000610 INF: Cycle	14	Tile	14	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:33:22.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28226, sync = True, waitForSettling = True)
17-03-17 18:33:22.428 -07 000000610 INF: Z Motor: Moving to -0.129210 mm, started at -0.136114 mm, distance = 6.90 um
17-03-17 18:33:22.428 -07 000000610 INF: FPGA: Xmit ZDACW 28226\n [Z Motor]
17-03-17 18:33:22.428 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:33:22.438 -07 000000610 INF: FPGA: 'ZDACW 28226' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:22.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:22.438 -07 000000415 INF: FPGA: Recv ZDACR 28226
17-03-17 18:33:22.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:22.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:33:22.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:22.598 -07 000000593 INF: FPGA: Recv ZSGSRD 29400
17-03-17 18:33:22.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:22.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:22.608 -07 000000480 INF: FPGA: Recv ZSGSRD 29402
17-03-17 18:33:22.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:22.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:22.618 -07 000000623 INF: FPGA: Recv ZSGSRD 29405
17-03-17 18:33:22.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:22.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:22.628 -07 000000438 INF: FPGA: Recv ZSGSRD 29403
17-03-17 18:33:22.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:22.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:22.638 -07 000000501 INF: FPGA: Recv ZSGSRD 29403
17-03-17 18:33:22.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:22.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:22.648 -07 000000424 INF: FPGA: Recv ZSGSRD 29399
17-03-17 18:33:22.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:22.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:22.658 -07 000000462 INF: FPGA: Recv ZSGSRD 29406
17-03-17 18:33:22.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:22.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:22.668 -07 000000478 INF: FPGA: Recv ZSGSRD 29401
17-03-17 18:33:22.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:22.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:22.678 -07 000000429 INF: FPGA: Recv ZSGSRD 29399
17-03-17 18:33:22.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:22.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:22.688 -07 000000608 INF: FPGA: Recv ZSGSRD 29401
17-03-17 18:33:22.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:22.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:22.698 -07 000000618 INF: FPGA: Recv ZPIEZORD 24936
17-03-17 18:33:22.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:22.708 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.307 V. Piezo Error = -9.8 V.
17-03-17 18:33:22.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29402 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29402 (-128.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29399 (-128.4 uncal um), Max = 29406 (-128.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:33:22.708 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29402, posNoise = 4, negNoise = 3
17-03-17 18:33:22.708 -07 000000610 INF: Z Motor: After move to -0.129210, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:22.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:33:22.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:22.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:22.708 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:22.708 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:22.708 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:33:22.708 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:22.708 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:33:22.708 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:33:22.708 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:22.708 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:33:22.708 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:33:22.708 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:33:22.708 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:33:22.708 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:33:22.718 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:33:22.718 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:33:22.728 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:33:22.728 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:33:22.728 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:33:22.728 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 18:33:22.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28402 150\n [Camera]
17-03-17 18:33:22.938 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:33:23.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:33:23.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:33:23.328 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:23.328 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:23.328 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 18:33:23.328 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:33:23.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:33:23.328 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:23.328 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:23.328 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:33:23.518 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28402 778
17-03-17 18:33:23.668 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:33:23.728 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:33:23.728 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 18:33:23.728 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:23.728 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:33:23.728 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:33:23.728 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:23.728 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:23.728 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:33:23.738 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:23.738 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:33:23.858 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:33:23.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:33:23.858 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:23.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:33:23.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:33:23.978 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:23.978 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:23.978 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:33:23.978 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:23.978 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 18:33:24.048 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:33:24.048 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:33:24.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28402 150' command took 2 ms to send, 1313 ms to get response, and 1322 ms overall
17-03-17 18:33:24.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:33:24.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.129208037403191. ------
17-03-17 18:33:24.058 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13588 mm
17-03-17 18:33:24.058 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:33:24.058 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:24.068 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29682, sync = True, waitForSettling = False)
17-03-17 18:33:24.068 -07 000000478 INF: Z Motor: Moving to -0.135875 mm, started at -0.129208 mm, distance = -6.67 um
17-03-17 18:33:24.068 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:24.068 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:33:24.068 -07 000000478 INF: FPGA: Xmit ZDACW 29682\n [Z Motor]
17-03-17 18:33:24.068 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 18:33:24.068 -07 000000012 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 18:33:24.068 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 18:33:24.078 -07 000000478 INF: FPGA: 'ZDACW 29682' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:33:24.078 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:33:24.088 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:24.088 -07 000000482 INF: FPGA: Recv YRDPOS 144772
17-03-17 18:33:24.098 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:24.098 -07 000000012 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 18:33:24.098 -07 000000012 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:24.098 -07 000000012 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:33:24.098 -07 000000012 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:33:24.098 -07 000000482 INF: FPGA: Recv ZDACR 29682
17-03-17 18:33:24.108 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:33:24.108 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:33:24.108 -07 000000478 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 18:33:24.278 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:33:24.278 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-17 18:33:24.368 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:33:24.368 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:33:24.368 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:24.378 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 18:33:24.378 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 18:33:24.378 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:24.378 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:33:24.378 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:24.378 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 18:33:24.378 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 18:33:24.478 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 18:33:24.478 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 386 ms overall
17-03-17 18:33:24.518 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:24.518 -07 000000476 INF: FPGA: Recv YRDPOS 146472
17-03-17 18:33:24.528 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:24.528 -07 000000012 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:24.528 -07 000000012 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 18:33:24.528 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.184 mm/sec
17-03-17 18:33:25.478 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:25.478 -07 000000623 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:33:25.488 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:25.488 -07 000000012 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:25.508 -07 000000012 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:33:25.508 -07 000000012 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:33:25.508 -07 000000012 INF: Y Motor: Moved to 71.5200 after 1437 ms (table move)
17-03-17 18:33:25.508 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135875 mm (DAC = 29682)
17-03-17 18:33:25.508 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:25.508 -07 000000438 INF: FPGA: Recv ZSGSRD 30436
17-03-17 18:33:25.518 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:33:25.518 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:25.518 -07 000000623 INF: FPGA: Recv ZSGSRD 30438
17-03-17 18:33:25.528 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:25.528 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:25.528 -07 000000448 INF: FPGA: Recv ZSGSRD 30441
17-03-17 18:33:25.538 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:25.538 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:25.538 -07 000000480 INF: FPGA: Recv ZSGSRD 30437
17-03-17 18:33:25.548 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:25.548 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:25.548 -07 000000512 INF: FPGA: Recv ZSGSRD 30441
17-03-17 18:33:25.558 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:25.558 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:25.558 -07 000000593 INF: FPGA: Recv ZSGSRD 30448
17-03-17 18:33:25.568 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:25.568 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:25.568 -07 000000476 INF: FPGA: Recv ZSGSRD 30444
17-03-17 18:33:25.578 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:25.578 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:25.578 -07 000000438 INF: FPGA: Recv ZSGSRD 30445
17-03-17 18:33:25.588 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:25.588 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:25.588 -07 000000623 INF: FPGA: Recv ZSGSRD 30440
17-03-17 18:33:25.598 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:25.598 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:25.598 -07 000000618 INF: FPGA: Recv ZSGSRD 30436
17-03-17 18:33:25.608 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:25.608 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:25.608 -07 000000482 INF: FPGA: Recv ZPIEZORD 26322
17-03-17 18:33:25.618 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:25.618 -07 000000462 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.529 V. Piezo Error = -9.1 V.
17-03-17 18:33:25.618 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30441 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30440 (-135.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30436 (-135.1 uncal um), Max = 30448 (-135.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:33:25.618 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30441, posNoise = 7, negNoise = 5
17-03-17 18:33:25.618 -07 000000462 INF: Z Motor: After move to -0.135875, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:25.618 -07 000000462 INF: Z Motor: Settle wait time = 1442 ms, measure time = 106 ms (allowed 150 ms), total time = 1548 ms
17-03-17 18:33:25.618 -07 000000462 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:33:25.668 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 18:33:25.668 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:33:25.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:25.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:25.668 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:25.668 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:25.668 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:33:25.668 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:25.668 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:33:25.668 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:33:25.678 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:33:25.678 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:33:25.678 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 18:33:25.678 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 18:33:25.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:33:25.728 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:33:25.928 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:33:25.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:33:25.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:33:25.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:33:25.968 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:33:25.968 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:33:25.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 18:33:26.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:33:26.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:26.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:33:26.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:33:26.168 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:26.168 -07 000000438 INF: Autofocus start
17-03-17 18:33:26.168 -07 000000438 INF: MeasureProfile start
17-03-17 18:33:26.168 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:26.178 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:33:26.178 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:33:26.178 -07 000000438 INF: MeasureProfile done
17-03-17 18:33:26.178 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:33:26.178 -07 000000438 INF: Autofocus finished
17-03-17 18:33:26.378 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:33:26.378 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:33:26.378 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.13588279381848. ----------
17-03-17 18:33:26.378 -07 000000610 INF: Cycle	14	Tile	15	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:33:26.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28189, sync = True, waitForSettling = True)
17-03-17 18:33:26.388 -07 000000610 INF: Z Motor: Moving to -0.129041 mm, started at -0.135883 mm, distance = 6.84 um
17-03-17 18:33:26.388 -07 000000610 INF: FPGA: Xmit ZDACW 28189\n [Z Motor]
17-03-17 18:33:26.388 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 18:33:26.398 -07 000000610 INF: FPGA: 'ZDACW 28189' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:33:26.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:26.398 -07 000000623 INF: FPGA: Recv ZDACR 28189
17-03-17 18:33:26.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:26.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:33:26.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:26.558 -07 000000512 INF: FPGA: Recv ZSGSRD 29374
17-03-17 18:33:26.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:26.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:26.568 -07 000000593 INF: FPGA: Recv ZSGSRD 29378
17-03-17 18:33:26.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:26.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:26.578 -07 000000429 INF: FPGA: Recv ZSGSRD 29374
17-03-17 18:33:26.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:26.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:26.588 -07 000000431 INF: FPGA: Recv ZSGSRD 29372
17-03-17 18:33:26.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:26.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:26.598 -07 000000608 INF: FPGA: Recv ZSGSRD 29379
17-03-17 18:33:26.598 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:33:26.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:33:26.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:26.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:26.608 -07 000000431 INF: FPGA: Recv ZSGSRD 29372
17-03-17 18:33:26.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:26.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:26.618 -07 000000608 INF: FPGA: Recv ZSGSRD 29380
17-03-17 18:33:26.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:26.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:26.628 -07 000000478 INF: FPGA: Recv ZSGSRD 29373
17-03-17 18:33:26.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:26.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:26.638 -07 000000501 INF: FPGA: Recv ZSGSRD 29373
17-03-17 18:33:26.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:26.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:26.648 -07 000000429 INF: FPGA: Recv ZSGSRD 29372
17-03-17 18:33:26.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:26.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:26.658 -07 000000431 INF: FPGA: Recv ZPIEZORD 24905
17-03-17 18:33:26.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:26.668 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -9.8 V.
17-03-17 18:33:26.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29375 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29374 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29372 (-128.2 uncal um), Max = 29380 (-128.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 18:33:26.668 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29375, posNoise = 5, negNoise = 3
17-03-17 18:33:26.668 -07 000000610 INF: Z Motor: After move to -0.129041, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:26.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:33:26.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:26.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:26.668 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:26.668 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:33:26.668 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:26.668 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:26.668 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:33:26.668 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:33:26.668 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:26.668 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:33:26.668 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:33:26.668 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:33:26.678 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:33:26.678 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:33:26.678 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:33:26.678 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:33:26.688 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:33:26.688 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 18:33:26.688 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:33:26.688 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:33:26.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28366 150\n [Camera]
17-03-17 18:33:26.888 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:33:27.288 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:33:27.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:33:27.288 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:27.288 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:33:27.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:33:27.288 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:27.288 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:27.288 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 18:33:27.298 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:27.298 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 18:33:27.468 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 3.994908,
17-03-17 18:33:27.478 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28366 778
17-03-17 18:33:27.628 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:33:27.678 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:33:27.678 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:33:27.678 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:27.688 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 18:33:27.688 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 18:33:27.688 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:27.688 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:27.688 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 18:33:27.688 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:27.698 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 18:33:27.818 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:33:27.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:33:27.818 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:27.818 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:33:27.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:33:27.828 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:27.828 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:27.828 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 18:33:27.828 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:27.828 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 18:33:28.008 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:33:28.008 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:33:28.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28366 150' command took 2 ms to send, 1306 ms to get response, and 1317 ms overall
17-03-17 18:33:28.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:33:28.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.52001953125, Z-Position -0.129034583675363. ------
17-03-17 18:33:28.018 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:28.018 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13510 mm
17-03-17 18:33:28.018 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:33:28.018 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 18:33:28.018 -07 000000593 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 18:33:28.018 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:28.018 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29514, sync = True, waitForSettling = False)
17-03-17 18:33:28.018 -07 000000424 INF: Z Motor: Moving to -0.135106 mm, started at -0.129035 mm, distance = -6.07 um
17-03-17 18:33:28.028 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:33:28.028 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:28.028 -07 000000429 INF: FPGA: Recv YRDPOS 146473
17-03-17 18:33:28.038 -07 000000424 INF: FPGA: Xmit ZDACW 29514\n [Z Motor]
17-03-17 18:33:28.038 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:33:28.038 -07 000000593 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:28.038 -07 000000593 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:33:28.038 -07 000000593 INF: Y Motor: Moving 1348 steps-27
17-03-17 18:33:28.038 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 18:33:28.048 -07 000000424 INF: FPGA: 'ZDACW 29514' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 18:33:28.048 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:33:28.058 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:33:28.068 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:28.068 -07 000000608 INF: FPGA: Recv ZDACR 29514
17-03-17 18:33:28.078 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:33:28.078 -07 000000424 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 18:33:28.218 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 18:33:28.218 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 18:33:28.218 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:28.228 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 18:33:28.228 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 18:33:28.228 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:28.228 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:28.228 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:33:28.228 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:28.238 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 18:33:28.248 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:33:28.248 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-17 18:33:28.428 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 18:33:28.428 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 18:33:28.468 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:28.468 -07 000000429 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:33:28.478 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:28.478 -07 000000593 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:28.478 -07 000000593 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 18:33:28.478 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 18:33:29.428 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:29.428 -07 000000012 INF: FPGA: Recv YRDPOS 148173
17-03-17 18:33:29.438 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:29.438 -07 000000593 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:29.458 -07 000000593 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:33:29.458 -07 000000593 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:33:29.458 -07 000000593 INF: Y Motor: Moved to 72.3501 after 1433 ms (table move)
17-03-17 18:33:29.458 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135106 mm (DAC = 29514)
17-03-17 18:33:29.458 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:29.458 -07 000000482 INF: FPGA: Recv ZSGSRD 30320
17-03-17 18:33:29.468 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:33:29.468 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:29.468 -07 000000501 INF: FPGA: Recv ZSGSRD 30314
17-03-17 18:33:29.478 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:29.478 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:29.478 -07 000000424 INF: FPGA: Recv ZSGSRD 30321
17-03-17 18:33:29.488 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:29.488 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:29.488 -07 000000429 INF: FPGA: Recv ZSGSRD 30323
17-03-17 18:33:29.498 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:29.498 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:29.498 -07 000000608 INF: FPGA: Recv ZSGSRD 30319
17-03-17 18:33:29.508 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:29.508 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:29.508 -07 000000448 INF: FPGA: Recv ZSGSRD 30320
17-03-17 18:33:29.518 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:29.518 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:29.518 -07 000000415 INF: FPGA: Recv ZSGSRD 30321
17-03-17 18:33:29.528 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:29.528 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:29.528 -07 000000462 INF: FPGA: Recv ZSGSRD 30326
17-03-17 18:33:29.538 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:29.538 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:29.538 -07 000000501 INF: FPGA: Recv ZSGSRD 30318
17-03-17 18:33:29.548 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:29.548 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:29.548 -07 000000593 INF: FPGA: Recv ZSGSRD 30321
17-03-17 18:33:29.558 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:29.558 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:29.558 -07 000000608 INF: FPGA: Recv ZPIEZORD 26204
17-03-17 18:33:29.568 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:29.568 -07 000000478 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.504 V. Piezo Error = -9.1 V.
17-03-17 18:33:29.568 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30320 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30320 (-134.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30314 (-134.3 uncal um), Max = 30326 (-134.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:33:29.568 -07 000000478 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30320, posNoise = 6, negNoise = 6
17-03-17 18:33:29.568 -07 000000478 INF: Z Motor: After move to -0.135106, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:29.568 -07 000000478 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-17 18:33:29.568 -07 000000478 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 18:33:29.618 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 18:33:29.618 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:33:29.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:29.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:29.618 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:29.618 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:29.618 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:33:29.618 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:29.618 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:29.618 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:33:29.628 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:33:29.628 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:33:29.638 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 18:33:29.638 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:33:29.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:33:29.688 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:33:29.888 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:33:29.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:33:29.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:33:29.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 18:33:29.928 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:33:29.928 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 18:33:29.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 18:33:30.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 18:33:30.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:30.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:33:30.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:33:30.138 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:30.138 -07 000000415 INF: Autofocus start
17-03-17 18:33:30.138 -07 000000415 INF: MeasureProfile start
17-03-17 18:33:30.138 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:30.148 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:33:30.148 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:33:30.158 -07 000000415 INF: MeasureProfile done
17-03-17 18:33:30.158 -07 000000415 INF: X=0  Z correction [um]=-0.02394831
17-03-17 18:33:30.158 -07 000000415 INF: Autofocus finished
17-03-17 18:33:30.348 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:33:30.348 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 18:33:30.358 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135105464149327. ----------
17-03-17 18:33:30.358 -07 000000610 INF: Cycle	14	Tile	16	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:33:30.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28021, sync = True, waitForSettling = True)
17-03-17 18:33:30.358 -07 000000610 INF: Z Motor: Moving to -0.128272 mm, started at -0.135105 mm, distance = 6.83 um
17-03-17 18:33:30.358 -07 000000610 INF: FPGA: Xmit ZDACW 28021\n [Z Motor]
17-03-17 18:33:30.358 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:33:30.368 -07 000000610 INF: FPGA: 'ZDACW 28021' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:33:30.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:30.368 -07 000000623 INF: FPGA: Recv ZDACR 28021
17-03-17 18:33:30.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:30.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:33:30.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:30.528 -07 000000012 INF: FPGA: Recv ZSGSRD 29258
17-03-17 18:33:30.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:30.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:30.538 -07 000000429 INF: FPGA: Recv ZSGSRD 29266
17-03-17 18:33:30.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:30.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:30.548 -07 000000478 INF: FPGA: Recv ZSGSRD 29253
17-03-17 18:33:30.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:30.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:30.558 -07 000000415 INF: FPGA: Recv ZSGSRD 29259
17-03-17 18:33:30.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:30.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:30.568 -07 000000438 INF: FPGA: Recv ZSGSRD 29258
17-03-17 18:33:30.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:30.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:30.578 -07 000000431 INF: FPGA: Recv ZSGSRD 29262
17-03-17 18:33:30.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:30.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:30.588 -07 000000462 INF: FPGA: Recv ZSGSRD 29257
17-03-17 18:33:30.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:30.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:30.598 -07 000000429 INF: FPGA: Recv ZSGSRD 29252
17-03-17 18:33:30.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:30.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:30.608 -07 000000593 INF: FPGA: Recv ZSGSRD 29259
17-03-17 18:33:30.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:30.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:30.618 -07 000000512 INF: FPGA: Recv ZSGSRD 29257
17-03-17 18:33:30.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:30.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:30.628 -07 000000480 INF: FPGA: Recv ZPIEZORD 24791
17-03-17 18:33:30.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:30.638 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.8 V.
17-03-17 18:33:30.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29258 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29258 (-127.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29252 (-127.5 uncal um), Max = 29266 (-127.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:33:30.638 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29258, posNoise = 8, negNoise = 6
17-03-17 18:33:30.638 -07 000000610 INF: Z Motor: After move to -0.128272, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:30.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 18:33:30.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:30.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:30.638 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:30.638 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:30.638 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:33:30.638 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:30.638 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:33:30.638 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:33:30.638 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:30.638 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:33:30.638 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:33:30.638 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:33:30.638 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 18:33:30.638 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:33:30.648 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:33:30.648 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:33:30.658 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:33:30.658 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:33:30.658 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:33:30.658 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:33:30.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28198 150\n [Camera]
17-03-17 18:33:30.858 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:33:31.258 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:33:31.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:33:31.258 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:31.258 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:31.258 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) start.
17-03-17 18:33:31.258 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:33:31.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:33:31.258 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:31.258 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:31.258 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 18:33:31.448 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28198 781
17-03-17 18:33:31.598 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:33:31.598 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:33:31.598 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:33:31.638 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:33:31.638 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 18:33:31.638 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:31.638 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:31.648 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 18:33:31.648 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 18:33:31.648 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 18:33:31.648 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:31.658 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:31.658 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 18:33:31.788 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:33:31.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:33:31.788 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:31.788 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:31.788 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 18:33:31.788 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:33:31.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:33:31.788 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:31.788 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:31.788 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 18:33:31.978 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:33:31.978 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:33:31.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28198 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:33:31.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:33:31.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128282950854777. ------
17-03-17 18:33:31.988 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:31.988 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13486 mm
17-03-17 18:33:31.988 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:33:31.988 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:31.988 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29461, sync = True, waitForSettling = False)
17-03-17 18:33:31.988 -07 000000424 INF: Z Motor: Moving to -0.134864 mm, started at -0.128283 mm, distance = -6.58 um
17-03-17 18:33:31.988 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 18:33:31.988 -07 000000480 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 18:33:31.998 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:33:31.998 -07 000000424 INF: FPGA: Xmit ZDACW 29461\n [Z Motor]
17-03-17 18:33:31.998 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 18:33:32.008 -07 000000424 INF: FPGA: 'ZDACW 29461' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 18:33:32.008 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:32.008 -07 000000478 INF: FPGA: Recv ZDACR 29461
17-03-17 18:33:32.018 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:32.018 -07 000000424 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 18:33:32.018 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:32.018 -07 000000501 INF: FPGA: Recv YRDPOS 148174
17-03-17 18:33:32.028 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 18:33:32.028 -07 000000480 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:32.028 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:33:32.028 -07 000000480 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:33:32.028 -07 000000480 INF: Y Motor: Moving 1347 steps-26
17-03-17 18:33:32.038 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:33:32.178 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 18:33:32.178 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 18:33:32.178 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:32.178 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:33:32.178 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 18:33:32.178 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:32.178 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:33:32.178 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 18:33:32.178 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:33:32.188 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:33:32.228 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:33:32.228 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-17 18:33:32.408 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:33:32.408 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 18:33:32.448 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:32.448 -07 000000618 INF: FPGA: Recv YRDPOS 149865
17-03-17 18:33:32.458 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:33:32.458 -07 000000480 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:32.458 -07 000000480 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 18:33:32.458 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.843 mm, average velocity = 2.206 mm/sec
17-03-17 18:33:32.838 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.005817,
17-03-17 18:33:33.408 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:33.408 -07 000000593 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:33:33.418 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:33.418 -07 000000480 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:33.438 -07 000000480 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:33:33.438 -07 000000480 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 18:33:33.438 -07 000000480 INF: Y Motor: Moved to 73.1768 after 1441 ms (table move)
17-03-17 18:33:33.438 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134864 mm (DAC = 29461)
17-03-17 18:33:33.438 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:33.438 -07 000000476 INF: FPGA: Recv ZSGSRD 30282
17-03-17 18:33:33.448 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:33:33.448 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:33.448 -07 000000429 INF: FPGA: Recv ZSGSRD 30284
17-03-17 18:33:33.458 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:33.458 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:33.458 -07 000000593 INF: FPGA: Recv ZSGSRD 30273
17-03-17 18:33:33.468 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:33.468 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:33.468 -07 000000618 INF: FPGA: Recv ZSGSRD 30281
17-03-17 18:33:33.478 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:33.478 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:33.478 -07 000000476 INF: FPGA: Recv ZSGSRD 30273
17-03-17 18:33:33.488 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:33.488 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:33.488 -07 000000448 INF: FPGA: Recv ZSGSRD 30288
17-03-17 18:33:33.498 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:33.498 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:33.498 -07 000000431 INF: FPGA: Recv ZSGSRD 30290
17-03-17 18:33:33.508 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:33.508 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:33.508 -07 000000429 INF: FPGA: Recv ZSGSRD 30282
17-03-17 18:33:33.518 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:33.518 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:33.518 -07 000000415 INF: FPGA: Recv ZSGSRD 30279
17-03-17 18:33:33.528 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:33.528 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:33.528 -07 000000424 INF: FPGA: Recv ZSGSRD 30278
17-03-17 18:33:33.538 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:33.538 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:33.538 -07 000000478 INF: FPGA: Recv ZPIEZORD 26137
17-03-17 18:33:33.548 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:33.548 -07 000000482 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.495 V. Piezo Error = -9.1 V.
17-03-17 18:33:33.548 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30281 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30282 (-134.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30273 (-134.0 uncal um), Max = 30290 (-134.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 18:33:33.548 -07 000000482 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30281, posNoise = 9, negNoise = 8
17-03-17 18:33:33.548 -07 000000482 INF: Z Motor: After move to -0.134864, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:33.548 -07 000000482 INF: Z Motor: Settle wait time = 1447 ms, measure time = 106 ms (allowed 150 ms), total time = 1553 ms
17-03-17 18:33:33.548 -07 000000482 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 18:33:33.598 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 18:33:33.598 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:33:33.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:33.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:33.598 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:33.598 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:33.598 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:33:33.598 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:33.598 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:33.598 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:33:33.608 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:33:33.608 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:33:33.618 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 18:33:33.618 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 18:33:33.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:33:33.668 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:33:33.868 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:33:33.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:33:33.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:33:33.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-17 18:33:33.908 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:33:33.908 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 18:33:33.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 18:33:33.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:33:33.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:33.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 18:33:33.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 18:33:34.008 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:34.008 -07 000000424 INF: Autofocus start
17-03-17 18:33:34.008 -07 000000424 INF: MeasureProfile start
17-03-17 18:33:34.008 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:34.018 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:33:34.018 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:33:34.018 -07 000000424 INF: MeasureProfile done
17-03-17 18:33:34.018 -07 000000424 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 18:33:34.018 -07 000000424 INF: Autofocus finished
17-03-17 18:33:34.218 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:33:34.218 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:33:34.218 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.134854919875799. ----------
17-03-17 18:33:34.218 -07 000000610 INF: Cycle	14	Tile	17	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:33:34.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27956, sync = True, waitForSettling = True)
17-03-17 18:33:34.228 -07 000000610 INF: Z Motor: Moving to -0.127974 mm, started at -0.134855 mm, distance = 6.88 um
17-03-17 18:33:34.228 -07 000000610 INF: FPGA: Xmit ZDACW 27956\n [Z Motor]
17-03-17 18:33:34.228 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 18:33:34.238 -07 000000610 INF: FPGA: 'ZDACW 27956' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:33:34.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:34.238 -07 000000429 INF: FPGA: Recv ZDACR 27956
17-03-17 18:33:34.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:34.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:33:34.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:34.398 -07 000000448 INF: FPGA: Recv ZSGSRD 29212
17-03-17 18:33:34.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:34.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:34.408 -07 000000462 INF: FPGA: Recv ZSGSRD 29218
17-03-17 18:33:34.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:34.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:34.418 -07 000000415 INF: FPGA: Recv ZSGSRD 29210
17-03-17 18:33:34.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:34.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:34.428 -07 000000448 INF: FPGA: Recv ZSGSRD 29211
17-03-17 18:33:34.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:34.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:34.438 -07 000000429 INF: FPGA: Recv ZSGSRD 29210
17-03-17 18:33:34.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:34.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:34.448 -07 000000618 INF: FPGA: Recv ZSGSRD 29211
17-03-17 18:33:34.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:34.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:34.458 -07 000000462 INF: FPGA: Recv ZSGSRD 29214
17-03-17 18:33:34.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:34.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:34.468 -07 000000415 INF: FPGA: Recv ZSGSRD 29208
17-03-17 18:33:34.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:34.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:34.478 -07 000000512 INF: FPGA: Recv ZSGSRD 29204
17-03-17 18:33:34.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:34.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:34.488 -07 000000012 INF: FPGA: Recv ZSGSRD 29204
17-03-17 18:33:34.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:34.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:34.498 -07 000000501 INF: FPGA: Recv ZPIEZORD 24753
17-03-17 18:33:34.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:34.508 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.266 V. Piezo Error = -9.8 V.
17-03-17 18:33:34.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29210 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29210 (-127.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29204 (-127.2 uncal um), Max = 29218 (-127.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:33:34.508 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29210, posNoise = 8, negNoise = 6
17-03-17 18:33:34.508 -07 000000610 INF: Z Motor: After move to -0.127974, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:34.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 18:33:34.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:34.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:34.508 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:34.508 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:33:34.508 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:34.508 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:34.508 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:33:34.508 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:33:34.508 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:33:34.508 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:33:34.508 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:33:34.508 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:33:34.518 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:33:34.518 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:33:34.518 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:33:34.518 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:33:34.528 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 18:33:34.528 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 18:33:34.528 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 18:33:34.528 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 18:33:34.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28132 150\n [Camera]
17-03-17 18:33:34.728 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:33:35.118 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:33:35.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:33:35.128 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:35.128 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:35.128 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 18:33:35.128 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:33:35.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:33:35.128 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:35.128 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:35.128 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 18:33:35.318 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28132 778
17-03-17 18:33:35.468 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:33:35.508 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 18:33:35.508 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 18:33:35.508 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:35.508 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 18:33:35.508 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 18:33:35.508 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:35.508 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 18:33:35.508 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:33:35.518 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:33:35.518 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 18:33:35.658 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:33:35.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:33:35.658 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:35.658 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:35.658 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 18:33:35.658 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:33:35.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:33:35.658 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:35.658 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:35.658 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 18:33:35.848 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:33:35.848 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:33:35.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28132 150' command took 2 ms to send, 1313 ms to get response, and 1316 ms overall
17-03-17 18:33:35.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:33:35.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.127974588671973. ------
17-03-17 18:33:35.848 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:35.848 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13442 mm
17-03-17 18:33:35.848 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:33:35.858 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:35.858 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 18:33:35.858 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 18:33:35.858 -07 000000618 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 18:33:35.858 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29363, sync = True, waitForSettling = False)
17-03-17 18:33:35.858 -07 000000512 INF: Z Motor: Moving to -0.134415 mm, started at -0.127975 mm, distance = -6.44 um
17-03-17 18:33:35.858 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:35.858 -07 000000415 INF: FPGA: Recv YRDPOS 149866
17-03-17 18:33:35.868 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:33:35.868 -07 000000512 INF: FPGA: Xmit ZDACW 29363\n [Z Motor]
17-03-17 18:33:35.868 -07 000000618 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:35.868 -07 000000618 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:33:35.868 -07 000000618 INF: Y Motor: Moving 1353 steps-33
17-03-17 18:33:35.868 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:33:35.878 -07 000000512 INF: FPGA: 'ZDACW 29363' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 18:33:35.878 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:33:35.888 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:33:35.898 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:35.898 -07 000000424 INF: FPGA: Recv ZDACR 29363
17-03-17 18:33:35.908 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:33:35.908 -07 000000512 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 18:33:36.058 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 18:33:36.058 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 18:33:36.058 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:36.058 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 18:33:36.058 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 18:33:36.058 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:36.068 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:36.068 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 18:33:36.068 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 18:33:36.068 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 18:33:36.078 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:33:36.078 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 223 ms overall
17-03-17 18:33:36.258 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 18:33:36.258 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 18:33:36.288 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:36.288 -07 000000429 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:33:36.298 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 18:33:36.298 -07 000000618 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:36.298 -07 000000618 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 18:33:36.298 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.131 mm/sec
17-03-17 18:33:36.598 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:33:36.608 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:33:37.248 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:37.248 -07 000000429 INF: FPGA: Recv YRDPOS 151570
17-03-17 18:33:37.258 -07 000000618 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:37.258 -07 000000618 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:37.268 -07 000000618 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:33:37.268 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:33:37.268 -07 000000618 INF: Y Motor: Moved to 74.0088 after 1413 ms (table move)
17-03-17 18:33:37.268 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134415 mm (DAC = 29363)
17-03-17 18:33:37.268 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:37.278 -07 000000012 INF: FPGA: Recv ZSGSRD 30215
17-03-17 18:33:37.278 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:33:37.278 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:37.278 -07 000000478 INF: FPGA: Recv ZSGSRD 30221
17-03-17 18:33:37.288 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:33:37.288 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:37.288 -07 000000424 INF: FPGA: Recv ZSGSRD 30210
17-03-17 18:33:37.298 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:37.298 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:37.298 -07 000000593 INF: FPGA: Recv ZSGSRD 30207
17-03-17 18:33:37.308 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:37.308 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:37.308 -07 000000415 INF: FPGA: Recv ZSGSRD 30214
17-03-17 18:33:37.318 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:37.318 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:37.318 -07 000000429 INF: FPGA: Recv ZSGSRD 30217
17-03-17 18:33:37.328 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:37.328 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:37.328 -07 000000482 INF: FPGA: Recv ZSGSRD 30211
17-03-17 18:33:37.338 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:37.338 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:37.338 -07 000000608 INF: FPGA: Recv ZSGSRD 30218
17-03-17 18:33:37.348 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:37.348 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:37.348 -07 000000501 INF: FPGA: Recv ZSGSRD 30217
17-03-17 18:33:37.358 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:37.358 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:37.358 -07 000000431 INF: FPGA: Recv ZSGSRD 30215
17-03-17 18:33:37.368 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:37.368 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:37.368 -07 000000476 INF: FPGA: Recv ZPIEZORD 26064
17-03-17 18:33:37.378 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:37.378 -07 000000462 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.481 V. Piezo Error = -9.1 V.
17-03-17 18:33:37.378 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30214 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30215 (-133.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30207 (-133.6 uncal um), Max = 30221 (-133.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:33:37.378 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30214, posNoise = 7, negNoise = 7
17-03-17 18:33:37.378 -07 000000462 INF: Z Motor: After move to -0.134415, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:37.378 -07 000000462 INF: Z Motor: Settle wait time = 1416 ms, measure time = 102 ms (allowed 150 ms), total time = 1518 ms
17-03-17 18:33:37.378 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 18:33:37.428 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1572 ms
17-03-17 18:33:37.428 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:33:37.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:37.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:37.428 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:37.428 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:37.428 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:33:37.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:37.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:37.428 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:33:37.438 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 18:33:37.438 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:33:37.448 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 18:33:37.448 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 18:33:37.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:33:37.498 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:33:37.698 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:33:37.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:33:37.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:33:37.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 18:33:37.728 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:33:37.738 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 18:33:37.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 18:33:37.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 18:33:37.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:37.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:33:37.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 18:33:37.838 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:37.838 -07 000000415 INF: Autofocus start
17-03-17 18:33:37.838 -07 000000415 INF: MeasureProfile start
17-03-17 18:33:37.838 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:37.848 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:33:37.848 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:33:37.848 -07 000000415 INF: MeasureProfile done
17-03-17 18:33:37.848 -07 000000415 INF: X=16  Z correction [um]=0.0530179
17-03-17 18:33:37.848 -07 000000415 INF: Autofocus finished
17-03-17 18:33:38.048 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:33:38.048 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:33:38.048 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134424497662301. ----------
17-03-17 18:33:38.048 -07 000000610 INF: Cycle	14	Tile	18	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:33:38.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27887, sync = True, waitForSettling = True)
17-03-17 18:33:38.058 -07 000000610 INF: Z Motor: Moving to -0.127659 mm, started at -0.134424 mm, distance = 6.77 um
17-03-17 18:33:38.058 -07 000000610 INF: FPGA: Xmit ZDACW 27887\n [Z Motor]
17-03-17 18:33:38.058 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 18:33:38.068 -07 000000610 INF: FPGA: 'ZDACW 27887' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:38.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:38.068 -07 000000608 INF: FPGA: Recv ZDACR 27887
17-03-17 18:33:38.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:38.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:33:38.208 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.005817,
17-03-17 18:33:38.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:38.228 -07 000000618 INF: FPGA: Recv ZSGSRD 29164
17-03-17 18:33:38.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:38.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:38.238 -07 000000431 INF: FPGA: Recv ZSGSRD 29157
17-03-17 18:33:38.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:38.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:38.258 -07 000000618 INF: FPGA: Recv ZSGSRD 29165
17-03-17 18:33:38.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:33:38.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:38.268 -07 000000431 INF: FPGA: Recv ZSGSRD 29156
17-03-17 18:33:38.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:38.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:38.288 -07 000000480 INF: FPGA: Recv ZSGSRD 29162
17-03-17 18:33:38.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:33:38.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:38.308 -07 000000448 INF: FPGA: Recv ZSGSRD 29161
17-03-17 18:33:38.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 18:33:38.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:38.318 -07 000000478 INF: FPGA: Recv ZSGSRD 29156
17-03-17 18:33:38.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:38.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:38.328 -07 000000618 INF: FPGA: Recv ZSGSRD 29164
17-03-17 18:33:38.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:38.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:38.338 -07 000000593 INF: FPGA: Recv ZSGSRD 29161
17-03-17 18:33:38.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:38.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:38.348 -07 000000462 INF: FPGA: Recv ZSGSRD 29165
17-03-17 18:33:38.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:38.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:38.358 -07 000000448 INF: FPGA: Recv ZPIEZORD 24687
17-03-17 18:33:38.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:38.368 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.255 V. Piezo Error = -9.8 V.
17-03-17 18:33:38.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29161 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29162 (-126.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29156 (-126.9 uncal um), Max = 29165 (-126.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 18:33:38.368 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29161, posNoise = 4, negNoise = 5
17-03-17 18:33:38.368 -07 000000610 INF: Z Motor: After move to -0.127659, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:38.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 311 ms)
17-03-17 18:33:38.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:38.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:38.368 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:38.368 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:38.368 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:33:38.368 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:33:38.368 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:33:38.368 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:38.368 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:33:38.368 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:33:38.368 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:38.368 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:33:38.378 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 18:33:38.378 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:33:38.378 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 18:33:38.378 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:33:38.388 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 18:33:38.388 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:33:38.388 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:33:38.388 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:33:38.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 28064 150\n [Camera]
17-03-17 18:33:38.588 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:33:38.988 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:33:38.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:33:38.988 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:38.988 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:38.988 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 18:33:38.988 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:33:38.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:33:38.988 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:38.988 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:38.988 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 18:33:39.178 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28064 781
17-03-17 18:33:39.328 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:33:39.368 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 18:33:39.368 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 18:33:39.368 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:39.368 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:39.378 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 18:33:39.378 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 18:33:39.378 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:39.378 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:33:39.378 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 18:33:39.378 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 18:33:39.518 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:33:39.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:33:39.518 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:39.518 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:39.518 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 18:33:39.518 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:33:39.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:33:39.528 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:39.528 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:39.528 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 18:33:39.708 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1309
17-03-17 18:33:39.708 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:33:39.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 28064 150' command took 2 ms to send, 1307 ms to get response, and 1316 ms overall
17-03-17 18:33:39.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 18:33:39.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.127659802277026. ------
17-03-17 18:33:39.718 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:39.718 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13398 mm
17-03-17 18:33:39.718 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 18:33:39.718 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:39.718 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 18:33:39.718 -07 000000424 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 18:33:39.718 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 29268, sync = True, waitForSettling = False)
17-03-17 18:33:39.718 -07 000000476 INF: Z Motor: Moving to -0.133980 mm, started at -0.127660 mm, distance = -6.32 um
17-03-17 18:33:39.728 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 18:33:39.728 -07 000000476 INF: FPGA: Xmit ZDACW 29268\n [Z Motor]
17-03-17 18:33:39.728 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 18:33:39.738 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:39.738 -07 000000476 INF: FPGA: 'ZDACW 29268' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 18:33:39.738 -07 000000415 INF: FPGA: Recv YRDPOS 151571
17-03-17 18:33:39.748 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 18:33:39.748 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 18:33:39.748 -07 000000424 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:39.748 -07 000000424 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 18:33:39.748 -07 000000424 INF: Y Motor: Moving 1349 steps-28
17-03-17 18:33:39.758 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:39.758 -07 000000501 INF: FPGA: Recv ZDACR 29268
17-03-17 18:33:39.768 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 18:33:39.768 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 18:33:39.768 -07 000000476 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 18:33:39.908 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 18:33:39.908 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 18:33:39.908 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:39.908 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 18:33:39.908 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 18:33:39.908 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:39.908 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:39.918 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 18:33:39.918 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:33:39.918 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:33:39.948 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 18:33:39.948 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 18:33:40.138 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 18:33:40.138 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 18:33:40.158 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:40.168 -07 000000501 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:33:40.168 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 18:33:40.168 -07 000000424 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:40.168 -07 000000424 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 18:33:40.168 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.153 mm/sec
17-03-17 18:33:41.118 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 18:33:41.118 -07 000000501 INF: FPGA: Recv YRDPOS 153257
17-03-17 18:33:41.128 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:41.128 -07 000000424 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 18:33:41.138 -07 000000424 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 18:33:41.138 -07 000000424 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 18:33:41.138 -07 000000424 INF: Y Motor: Moved to 74.8325 after 1416 ms (table move)
17-03-17 18:33:41.138 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133980 mm (DAC = 29268)
17-03-17 18:33:41.138 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:41.148 -07 000000415 INF: FPGA: Recv ZSGSRD 30149
17-03-17 18:33:41.148 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 18:33:41.148 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:41.148 -07 000000429 INF: FPGA: Recv ZSGSRD 30147
17-03-17 18:33:41.158 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 18:33:41.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:41.158 -07 000000623 INF: FPGA: Recv ZSGSRD 30148
17-03-17 18:33:41.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:41.168 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:41.168 -07 000000476 INF: FPGA: Recv ZSGSRD 30143
17-03-17 18:33:41.178 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:41.178 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:41.178 -07 000000415 INF: FPGA: Recv ZSGSRD 30145
17-03-17 18:33:41.188 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:41.188 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:41.188 -07 000000480 INF: FPGA: Recv ZSGSRD 30139
17-03-17 18:33:41.198 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:41.198 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:41.198 -07 000000431 INF: FPGA: Recv ZSGSRD 30149
17-03-17 18:33:41.208 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:41.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:41.208 -07 000000476 INF: FPGA: Recv ZSGSRD 30148
17-03-17 18:33:41.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:41.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:41.218 -07 000000429 INF: FPGA: Recv ZSGSRD 30148
17-03-17 18:33:41.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:41.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:41.228 -07 000000462 INF: FPGA: Recv ZSGSRD 30147
17-03-17 18:33:41.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:41.238 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:41.238 -07 000000623 INF: FPGA: Recv ZPIEZORD 25999
17-03-17 18:33:41.248 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:41.248 -07 000000482 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.466 V. Piezo Error = -9.1 V.
17-03-17 18:33:41.248 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30146 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30148 (-133.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30139 (-133.2 uncal um), Max = 30149 (-133.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 18:33:41.248 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30146, posNoise = 3, negNoise = 7
17-03-17 18:33:41.248 -07 000000482 INF: Z Motor: After move to -0.133980, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:41.248 -07 000000482 INF: Z Motor: Settle wait time = 1419 ms, measure time = 104 ms (allowed 150 ms), total time = 1523 ms
17-03-17 18:33:41.258 -07 000000482 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 18:33:41.308 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 18:33:41.308 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 18:33:41.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:41.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:41.308 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:41.308 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:41.308 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 18:33:41.308 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:41.308 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 18:33:41.308 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 18:33:41.318 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 18:33:41.318 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 18:33:41.328 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 18:33:41.328 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 18:33:41.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 18:33:41.378 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 18:33:41.578 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 18:33:41.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 18:33:41.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 18:33:41.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 18:33:41.598 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 18:33:41.618 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 18:33:41.618 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 18:33:41.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 18:33:41.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 18:33:41.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:41.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 18:33:41.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 18:33:41.718 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 13. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=132, R2=141, Total=273. Warn if over 250 bubbles per interval.
17-03-17 18:33:41.818 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 18:33:41.818 -07 000000448 INF: Autofocus start
17-03-17 18:33:41.818 -07 000000448 INF: MeasureProfile start
17-03-17 18:33:41.818 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 18:33:41.828 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 18:33:41.828 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 18:33:41.828 -07 000000448 INF: MeasureProfile done
17-03-17 18:33:41.828 -07 000000448 INF: X=5  Z correction [um]=0.0001036296
17-03-17 18:33:41.828 -07 000000448 INF: Autofocus finished
17-03-17 18:33:42.028 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 18:33:42.028 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 18:33:42.028 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.133987651236661. ----------
17-03-17 18:33:42.028 -07 000000610 INF: Cycle	14	Tile	19	Exposure Settings		A	393	G	189	T	189	C	393
17-03-17 18:33:42.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27780, sync = True, waitForSettling = True)
17-03-17 18:33:42.038 -07 000000610 INF: Z Motor: Moving to -0.127169 mm, started at -0.133988 mm, distance = 6.82 um
17-03-17 18:33:42.038 -07 000000610 INF: FPGA: Xmit ZDACW 27780\n [Z Motor]
17-03-17 18:33:42.038 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 18:33:42.048 -07 000000610 INF: FPGA: 'ZDACW 27780' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:42.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 18:33:42.048 -07 000000501 INF: FPGA: Recv ZDACR 27780
17-03-17 18:33:42.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:42.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 18:33:42.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:42.208 -07 000000424 INF: FPGA: Recv ZSGSRD 29090
17-03-17 18:33:42.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:42.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:42.218 -07 000000618 INF: FPGA: Recv ZSGSRD 29085
17-03-17 18:33:42.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:42.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:42.228 -07 000000623 INF: FPGA: Recv ZSGSRD 29080
17-03-17 18:33:42.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:42.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:42.238 -07 000000512 INF: FPGA: Recv ZSGSRD 29086
17-03-17 18:33:42.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:42.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:42.248 -07 000000476 INF: FPGA: Recv ZSGSRD 29095
17-03-17 18:33:42.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:42.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:42.258 -07 000000482 INF: FPGA: Recv ZSGSRD 29083
17-03-17 18:33:42.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:42.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:42.268 -07 000000593 INF: FPGA: Recv ZSGSRD 29083
17-03-17 18:33:42.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:42.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:42.278 -07 000000429 INF: FPGA: Recv ZSGSRD 29087
17-03-17 18:33:42.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:42.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:42.288 -07 000000462 INF: FPGA: Recv ZSGSRD 29084
17-03-17 18:33:42.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:42.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 18:33:42.298 -07 000000415 INF: FPGA: Recv ZSGSRD 29087
17-03-17 18:33:42.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 18:33:42.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 18:33:42.308 -07 000000482 INF: FPGA: Recv ZPIEZORD 24589
17-03-17 18:33:42.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 18:33:42.318 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.239 V. Piezo Error = -9.9 V.
17-03-17 18:33:42.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.2 um, Read 10 ADC samples: Avg = 29086 (-126.4 uncal um), Error = 0.8 uncal um, Median = 29086 (-126.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29080 (-126.4 uncal um), Max = 29095 (-126.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 18:33:42.318 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29086, posNoise = 9, negNoise = 6
17-03-17 18:33:42.318 -07 000000610 INF: Z Motor: After move to -0.127169, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 18:33:42.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 18:33:42.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 18:33:42.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 18:33:42.318 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 18:33:42.318 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 18:33:42.318 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 18:33:42.318 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 18:33:42.318 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 18:33:42.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 18:33:42.318 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 18:33:42.318 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 18:33:42.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 18:33:42.318 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 18:33:42.328 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 18:33:42.328 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 18:33:42.328 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 18:33:42.328 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 18:33:42.338 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 18:33:42.338 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 18:33:42.338 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 18:33:42.338 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 18:33:42.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 393 393 189 189 27957 150\n [Camera]
17-03-17 18:33:42.538 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 18:33:42.938 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 18:33:42.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 18:33:42.938 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:42.938 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:42.938 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 18:33:42.938 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 18:33:42.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 18:33:42.938 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:42.938 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:42.938 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 18:33:43.128 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27957 778
17-03-17 18:33:43.278 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 928
17-03-17 18:33:43.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 18:33:43.328 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 18:33:43.328 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:43.328 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:43.328 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 18:33:43.338 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 18:33:43.338 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 18:33:43.338 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:43.338 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 18:33:43.348 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 18:33:43.468 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1117
17-03-17 18:33:43.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1117
17-03-17 18:33:43.468 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 18:33:43.598 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1117
17-03-17 18:33:43.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1117
17-03-17 18:33:43.598 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 18:33:43.598 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) start.
17-03-17 18:33:43.598 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 18:33:43.608 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 18:33:43.608 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 18:33:43.628 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.005817,
17-03-17 18:33:43.658 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1310
17-03-17 18:33:43.658 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 18:33:43.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 393 393 189 189 27957 150' command took 2 ms to send, 1306 ms to get response, and 1316 ms overall
17-03-17 18:33:43.998 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 18:33:43.998 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 18:33:43.998 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:43.998 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1062015024, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 18:33:44.008 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 18:33:44.008 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 18:33:44.008 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:44.008 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 18:33:44.008 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 538 ms.
17-03-17 18:33:44.008 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 18:33:44.008 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 18:33:44.048 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-17 18:33:44.048 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 18:33:44.098 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 18:33:44.158 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-17 18:33:44.158 -07 000000610 INF: Imaging Cycle 14: ScanTilesCommand Cycle 14 time end. Duration was 168320 ms.
17-03-17 18:33:44.158 -07 000000610 INF: =================== Cycle #14 ===================
17-03-17 18:33:44.158 -07 000000610 INF: ===================  ===================
17-03-17 18:33:44.158 -07 000000431 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 18:33:44.158 -07 000000482 INF: FPGA: Recv EXLED1ADCR 23
17-03-17 18:33:44.168 -07 000000431 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 18:33:44.168 -07 000000431 INF: GreenLED: Using Green data: Photodiode ADC 23 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.6 mW
17-03-17 18:33:44.168 -07 000000431 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 14, FrontChillerTemperature: 4.005817, FrontChillerHeatSinkTemperature: 0.242715, AmbientTemperature: 18.71372, FlowCellCompartmentTemperature: 22.00417, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.3887, GreenLEDSensorTemperature: 25.99728, PhotodiodePowerAdcGreen: 23, PhotodiodePowerMwGreen: 1.653493
17-03-17 18:33:44.168 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.