17-03-18 06:28:18.574 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:28:18.584 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 06:28:18.584 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-18 06:28:18.584 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:18.584 -07 000000480 INF: FPGA: Recv YRDPOS 153255
17-03-18 06:28:18.594 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:18.594 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:18.594 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 06:28:18.594 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 06:28:18.594 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 06:28:18.704 -07 000000480 INF: FPGA: Recv YMVTO 154378 872
17-03-18 06:28:18.704 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-18 06:28:18.704 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 06:28:18.704 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 878 steps, but required 872 steps (0.545 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 06:28:18.704 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.733 mm/sec
17-03-18 06:28:21.704 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:28:21.704 -07 000000591 INF: FPGA: Recv YRDPOS 154378
17-03-18 06:28:21.714 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:28:21.714 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:28:21.734 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:28:21.734 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:28:21.734 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3152 ms
17-03-18 06:28:21.734 -07 000000610 INF: =================== Cycle #150, Flow Cell Temp 60° ===================
17-03-18 06:28:21.734 -07 000000610 INF: =================== Cycle #150, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 06:28:21.734 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 06:28:21.744 -07 000000592 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:28:21.754 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:28:21.754 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:28:21.754 -07 000000480 INF: FPGA: Recv TEC2EN 
17-03-18 06:28:21.764 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:28:21.764 -07 000000610 INF: =================== Cycle #150, Flow Cell Temp 60° ===================
17-03-18 06:28:21.764 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:28:21.764 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:28:21.764 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:28:21.794 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:28:21.794 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 06:28:21.794 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:28:21.864 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:28:21.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1960, R2=2039, Total=3999. Warn if over 250 bubbles per interval.
17-03-18 06:28:22.094 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:28:22.114 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:28:22.114 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:28:22.164 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:28:22.184 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:28:22.184 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:28:22.284 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:28:22.284 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:28:22.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:22.314 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:28:22.314 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:28:22.314 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:28:22.444 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:28:22.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:22.654 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.966297,
17-03-18 06:28:25.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:25.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:26.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:26.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:26.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:26.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:26.544 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:28:26.544 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:28:26.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:26.704 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:28:26.704 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:28:26.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:26.864 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:28:26.864 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:28:26.864 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:28:26.864 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 6
17-03-18 06:28:26.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=6, R2=6, Total=12. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1966, R2=2045, Total=4011. Warn if over 250 bubbles per interval.
17-03-18 06:28:26.994 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:28:27.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:27.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:27.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:27.484 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:28:27.484 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:28:28.024 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.988112,
17-03-18 06:28:28.704 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:28:28.704 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 06:28:28.704 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:28:28.724 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:28:28.724 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 06:28:28.724 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 06:28:28.864 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:28:28.884 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 06:28:28.884 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 06:28:28.934 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:28:28.954 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:28:28.954 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:28:29.054 -07 000000610 INF: =================== Cycle #150, Pumping Reagent CMS (4) ===================
17-03-18 06:28:29.054 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:28:29.054 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:29.084 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:28:29.084 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:28:29.084 -07 000000610 INF: =================== Cycle #150, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 06:28:29.214 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:28:29.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:30.694 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:30.724 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:31.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:31.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:31.174 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 06:28:31.174 -07 000000610 INF: =================== Cycle #150, Pumping Reagent CMS (4) ===================
17-03-18 06:28:31.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:31.334 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:28:31.334 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:28:31.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:31.494 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:28:31.494 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:28:31.494 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:28:31.624 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:28:31.654 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:31.864 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 5
17-03-18 06:28:31.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=5, R2=4, Total=9. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1971, R2=2049, Total=4020. Warn if over 250 bubbles per interval.
17-03-18 06:28:32.084 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:32.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:32.114 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:28:32.114 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:28:33.334 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 06:28:33.334 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:28:33.334 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:28:33.354 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:28:33.354 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 06:28:33.354 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 06:28:33.394 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.018051,
17-03-18 06:28:33.504 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:28:33.524 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 06:28:33.524 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 06:28:33.574 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:28:33.594 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:28:33.594 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:28:33.694 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:28:33.694 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:28:33.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:33.724 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:28:33.724 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:28:33.724 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:28:33.854 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:28:33.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:34.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:34.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:34.794 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:28:34.794 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:28:34.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:34.954 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:28:34.954 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:28:35.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:35.114 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:28:35.114 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:28:35.114 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:28:35.244 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:28:35.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:35.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:35.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:35.734 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:28:35.734 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:28:35.734 -07 000000461 INF: WaitCommand(10000) start
17-03-18 06:28:35.734 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:28:35.734 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:28:36.864 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:28:36.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1971, R2=2050, Total=4021. Warn if over 250 bubbles per interval.
17-03-18 06:28:36.954 -07 000000502 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:28:36.954 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-18 06:28:36.984 -07 000000502 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:28:36.984 -07 000000502 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:28:37.114 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:28:37.154 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:38.684 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:38.714 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:38.764 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.038479,
17-03-18 06:28:39.134 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:39.164 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:39.164 -07 000000502 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:28:39.164 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:28:39.164 -07 000000502 INF: ===================  ===================
17-03-18 06:28:41.864 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:28:41.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1971, R2=2050, Total=4021. Warn if over 250 bubbles per interval.
17-03-18 06:28:44.134 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.024884,
17-03-18 06:28:45.744 -07 000000461 INF: WaitCommand(10000) end
17-03-18 06:28:45.744 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:28:45.744 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 06:28:45.744 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:45.774 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:28:45.774 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:28:45.774 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:28:45.904 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 06:28:45.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:46.864 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:28:46.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1971, R2=2050, Total=4021. Warn if over 250 bubbles per interval.
17-03-18 06:28:49.504 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.007176,
17-03-18 06:28:51.864 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:28:51.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1971, R2=2050, Total=4021. Warn if over 250 bubbles per interval.
17-03-18 06:28:52.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:52.104 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:52.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:52.554 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:52.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:53.004 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:53.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:53.454 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:53.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:53.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:53.904 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 06:28:53.904 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:28:54.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:54.064 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:28:54.064 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:28:54.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:54.224 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:28:54.224 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:28:54.224 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:28:54.354 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:28:54.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:54.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:54.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:54.844 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:28:54.844 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:28:54.874 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.019446,
17-03-18 06:28:56.064 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:28:56.064 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 06:28:56.064 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:28:56.084 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:28:56.084 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 06:28:56.084 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 06:28:56.294 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:28:56.314 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 06:28:56.314 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 06:28:56.364 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:28:56.384 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:28:56.384 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:28:56.484 -07 000000610 INF: =================== Cycle #150, Pumping Reagent IMT (1) ===================
17-03-18 06:28:56.484 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:28:56.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:56.514 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:28:56.514 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:28:56.514 -07 000000610 INF: =================== Cycle #150, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 06:28:56.644 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:28:56.684 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:56.864 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 06:28:56.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1972, R2=2051, Total=4023. Warn if over 250 bubbles per interval.
17-03-18 06:28:58.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:58.154 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:28:58.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:58.604 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:58.604 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:28:58.604 -07 000000610 INF: =================== Cycle #150, Pumping Reagent IMT (1) ===================
17-03-18 06:28:58.734 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:58.764 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:28:58.764 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:28:58.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:28:58.924 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:28:58.924 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:28:58.924 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:28:59.054 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:28:59.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:59.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:28:59.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:28:59.544 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:28:59.544 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:29:00.244 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.024884,
17-03-18 06:29:00.764 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 06:29:00.764 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:29:00.764 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:29:00.784 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:29:00.784 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 06:29:00.784 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:29:01.014 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:29:01.034 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 06:29:01.034 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 06:29:01.084 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:29:01.104 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:29:01.104 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:29:01.204 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:29:01.204 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:29:01.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:29:01.234 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:29:01.234 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:29:01.234 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:29:01.364 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:29:01.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:29:01.864 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 06:29:01.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:29:02.274 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:29:02.304 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:29:02.304 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:29:02.304 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:29:02.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:29:02.474 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:29:02.474 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:29:02.604 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:29:02.634 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:29:02.634 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:29:02.634 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:29:02.764 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:29:02.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:29:03.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:29:03.254 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:29:03.254 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:29:03.254 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:29:03.254 -07 000000610 INF: =================== Cycle #150, Flow Cell Temp 65° ===================
17-03-18 06:29:03.254 -07 000000610 INF: =================== Cycle #150, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 06:29:03.254 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 06:29:03.254 -07 000000611 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:29:03.264 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:29:03.264 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:29:03.264 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-18 06:29:03.274 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:29:03.274 -07 000000610 INF: =================== Cycle #150, Flow Cell Temp 65° ===================
17-03-18 06:29:03.274 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:29:03.274 -07 000000610 INF: WaitCommand(30000) start
17-03-18 06:29:05.624 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.03576,
17-03-18 06:29:06.864 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:29:06.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:29:10.984 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.996267,
17-03-18 06:29:11.864 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:29:11.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:29:16.354 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.978563,
17-03-18 06:29:16.864 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:29:16.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:29:21.724 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.986717,
17-03-18 06:29:21.864 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:29:21.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:29:26.864 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:29:26.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:29:27.094 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.989471,
17-03-18 06:29:31.864 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:29:31.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:29:32.464 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.999021,
17-03-18 06:29:33.284 -07 000000610 INF: WaitCommand(30000) end
17-03-18 06:29:33.284 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:29:33.284 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 06:29:33.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:29:33.414 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:29:33.414 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:29:33.414 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:29:33.544 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 06:29:33.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:29:34.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:29:34.154 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:29:34.154 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 06:29:34.154 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:29:34.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:29:34.314 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:29:34.314 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:29:34.444 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:29:34.474 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:29:34.474 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:29:34.474 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:29:34.604 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:29:34.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:29:35.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:29:35.094 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:29:35.094 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:29:35.094 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:29:35.094 -07 000000447 INF: WaitCommand(30000) start
17-03-18 06:29:35.094 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:29:35.094 -07 000000590 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:29:36.314 -07 000000590 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:29:36.314 -07 000000590 INF: LanePump: Xmit /1?\r
17-03-18 06:29:36.344 -07 000000590 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:29:36.344 -07 000000590 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:29:36.474 -07 000000590 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:29:36.514 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:29:36.864 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:29:36.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:29:37.844 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.979922,
17-03-18 06:29:38.854 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 06:29:38.884 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:29:39.304 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 06:29:39.334 -07 000000590 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:29:39.334 -07 000000590 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 06:29:39.334 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:29:39.334 -07 000000590 INF: ===================  ===================
17-03-18 06:29:41.864 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:29:41.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:29:43.204 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.981281,
17-03-18 06:29:46.864 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:29:46.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:29:48.584 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.994908,
17-03-18 06:29:51.864 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:29:51.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:29:53.954 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.981281,
17-03-18 06:29:56.864 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:29:56.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:29:59.314 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.008536,
17-03-18 06:30:01.864 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:30:01.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:30:04.684 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.018051,
17-03-18 06:30:05.104 -07 000000447 INF: WaitCommand(30000) end
17-03-18 06:30:05.104 -07 000000610 INF: =================== Cycle #150, Flow Cell Temp 22° ===================
17-03-18 06:30:05.104 -07 000000610 INF: =================== Cycle #150, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 06:30:05.104 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 06:30:05.104 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:30:05.114 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:30:05.114 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:30:05.114 -07 000000487 INF: FPGA: Recv TEC2EN 
17-03-18 06:30:05.124 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:05.124 -07 000000610 INF: =================== Cycle #150, Flow Cell Temp 22° ===================
17-03-18 06:30:05.124 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:30:05.124 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:30:05.124 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:30:05.124 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:30:05.154 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:30:05.154 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:30:05.154 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:30:05.284 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:30:05.324 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:30:06.864 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:30:06.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1973, R2=2052, Total=4025. Warn if over 250 bubbles per interval.
17-03-18 06:30:08.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:30:08.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:30:08.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:30:08.934 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:30:09.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:30:09.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:30:09.384 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:30:09.384 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:30:09.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:30:09.544 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:30:09.544 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:30:09.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:30:09.704 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:30:09.704 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:30:09.704 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:30:09.834 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:30:09.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:30:10.054 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.007176,
17-03-18 06:30:10.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:30:10.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:30:10.324 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:30:10.324 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:30:11.544 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:30:11.544 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 06:30:11.544 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:30:11.564 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:30:11.564 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 06:30:11.564 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 06:30:11.714 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:30:11.734 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:30:11.734 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:30:11.784 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:30:11.804 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:30:11.804 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:30:11.864 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 06:30:11.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:30:11.904 -07 000000610 INF: =================== Cycle #150, Pumping Reagent USM (2) ===================
17-03-18 06:30:11.904 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:30:11.904 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:30:11.934 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:30:11.934 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:30:11.934 -07 000000610 INF: =================== Cycle #150, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 06:30:12.064 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:30:12.104 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:30:13.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:30:13.574 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:30:13.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:30:14.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:30:14.024 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:30:14.024 -07 000000610 INF: =================== Cycle #150, Pumping Reagent USM (2) ===================
17-03-18 06:30:14.154 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:30:14.184 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:30:14.184 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:30:14.314 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:30:14.344 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:30:14.344 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:30:14.344 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:30:14.474 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:30:14.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:30:14.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:30:14.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:30:14.964 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:30:14.964 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:30:15.424 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.011254,
17-03-18 06:30:16.184 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:30:16.184 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:30:16.184 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:30:16.204 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:30:16.204 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 06:30:16.204 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:30:16.354 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:30:16.374 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:30:16.374 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:30:16.424 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:30:16.444 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:30:16.444 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:30:16.544 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:30:16.544 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:30:16.544 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:30:16.574 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:30:16.574 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:30:16.574 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:30:16.704 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:30:16.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:30:16.864 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:30:16.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:30:17.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:30:17.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:30:17.644 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:30:17.644 -07 000000610 INF: =================== Cycle #150, Pumping Reagent PR2 (3) ===================
17-03-18 06:30:17.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:30:17.804 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:30:17.804 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:30:17.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:30:17.964 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:30:17.964 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:30:17.964 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:30:18.094 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:30:18.124 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:30:18.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:30:18.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:30:18.584 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:30:18.584 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:30:18.584 -07 000000382 INF: WaitCommand(10000) start
17-03-18 06:30:18.584 -07 000000592 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:30:18.584 -07 000000592 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:30:19.804 -07 000000592 INF: AsyncDelayTimer waited 1214ms
17-03-18 06:30:19.804 -07 000000592 INF: LanePump: Xmit /1?\r
17-03-18 06:30:19.834 -07 000000592 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:30:19.834 -07 000000592 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:30:19.964 -07 000000592 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:30:20.004 -07 000000592 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:30:20.804 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.000345,
17-03-18 06:30:21.534 -07 000000592 INF: LanePump: Xmit /1Q\r
17-03-18 06:30:21.564 -07 000000592 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:30:21.864 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:30:21.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:30:21.984 -07 000000592 INF: LanePump: Xmit /1Q\r
17-03-18 06:30:22.014 -07 000000592 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:30:22.014 -07 000000592 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:30:22.014 -07 000000592 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:30:22.014 -07 000000592 INF: ===================  ===================
17-03-18 06:30:26.164 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.978563,
17-03-18 06:30:26.864 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:30:26.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:30:28.594 -07 000000382 INF: WaitCommand(10000) end
17-03-18 06:30:28.594 -07 000000610 INF: =================== Cycle #150, Imaging ===================
17-03-18 06:30:28.594 -07 000000610 INF: Imaging Cycle 150: ScanTilesCommand Cycle 150 time start.
17-03-18 06:30:28.594 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 06:30:28.594 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:30:28.624 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:30:28.624 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 06:30:28.624 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 06:30:28.924 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:30:28.944 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:30:28.944 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:30:28.994 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:30:29.014 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:30:29.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:29.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:29.014 -07 000000447 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 06:30:29.014 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:29.014 -07 000000447 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 06:30:29.014 -07 000000502 INF: FPGA: Recv EXLED1ON 
17-03-18 06:30:29.024 -07 000000447 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:30:29.024 -07 000000447 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 06:30:29.024 -07 000000590 INF: FPGA: Recv EXLED1ADCR 23165
17-03-18 06:30:29.034 -07 000000447 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:29.034 -07 000000447 INF: RedLED: Using Red data: Photodiode ADC 23165 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.9 mW
17-03-18 06:30:29.034 -07 000000447 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 06:30:29.034 -07 000000592 INF: FPGA: Recv EXLED1OFF 
17-03-18 06:30:29.044 -07 000000447 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:29.044 -07 000000447 INF: RedLED: LED was on for 20 ms
17-03-18 06:30:29.044 -07 000000447 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 06:30:29.044 -07 000000447 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 06:30:29.044 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:29.044 -07 000000447 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 06:30:29.044 -07 000000382 INF: FPGA: Recv EXLED2ON 
17-03-18 06:30:29.054 -07 000000447 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:30:29.054 -07 000000447 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:30:29.054 -07 000000590 INF: FPGA: Recv EXLED1ADCR 2104
17-03-18 06:30:29.064 -07 000000447 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:29.064 -07 000000447 INF: GreenLED: Using Green data: Photodiode ADC 2104 --> 0.9 mW (old method), or 182.8 mW (new method). Difference = 181.9 mW
17-03-18 06:30:29.064 -07 000000447 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 06:30:29.064 -07 000000382 INF: FPGA: Recv EXLED2OFF 
17-03-18 06:30:29.074 -07 000000447 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:29.074 -07 000000447 INF: GreenLED: LED was on for 19 ms
17-03-18 06:30:29.074 -07 000000447 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-18 06:30:29.074 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:30:29.074 -07 000000447 INF: FPGA: Recv EMCUR 
17-03-18 06:30:29.084 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:30:29.084 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 06:30:29.584 -07 000000382 INF: FPGA: Recv EMOUT
17-03-18 06:30:29.584 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:30:29.584 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 06:30:29.584 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 06:30:29.594 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:30:29.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:30:29.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.126458474606517. ------
17-03-18 06:30:29.594 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:29.594 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17840 mm
17-03-18 06:30:29.594 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:30:29.594 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:29.594 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:30:29.594 -07 000000438 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-18 06:30:29.594 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38971, sync = True, waitForSettling = False)
17-03-18 06:30:29.594 -07 000000382 INF: Z Motor: Moving to -0.178398 mm, started at -0.126458 mm, distance = -51.94 um
17-03-18 06:30:29.604 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:30:29.604 -07 000000382 INF: FPGA: Xmit ZDACW 38971\n [Z Motor]
17-03-18 06:30:29.604 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:30:29.614 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:29.614 -07 000000382 INF: FPGA: 'ZDACW 38971' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:29.614 -07 000000590 INF: FPGA: Recv YRDPOS 154378
17-03-18 06:30:29.624 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:30:29.624 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:30:29.624 -07 000000438 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:29.624 -07 000000438 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 06:30:29.624 -07 000000438 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:30:29.634 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:29.634 -07 000000502 INF: FPGA: Recv ZDACR 38971
17-03-18 06:30:29.644 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:30:29.644 -07 000000382 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:30:29.644 -07 000000438 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:30:29.824 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:30:29.824 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:30:31.324 -07 000000502 INF: FPGA: Recv YMVTO 122701 24777
17-03-18 06:30:31.324 -07 000000438 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-18 06:30:31.324 -07 000000438 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:30:31.324 -07 000000438 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 06:30:31.324 -07 000000438 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.467 mm, average velocity = 9.066 mm/sec
17-03-18 06:30:31.534 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.99219,
17-03-18 06:30:31.864 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:30:31.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:30:34.174 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:34.174 -07 000000382 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:30:34.184 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:34.184 -07 000000438 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:34.214 -07 000000438 INF: Y Motor: After move to 59.912609, error = -0.003429, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:30:34.214 -07 000000438 INF: Y Motor: Position error after settling = -7 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 06:30:34.214 -07 000000438 INF: Y Motor: Moved to 59.9092 after 4613 ms
17-03-18 06:30:34.214 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178398 mm (DAC = 38971)
17-03-18 06:30:34.214 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:34.214 -07 000000382 INF: FPGA: Recv ZSGSRD 37068
17-03-18 06:30:34.224 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:30:34.224 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:34.224 -07 000000626 INF: FPGA: Recv ZSGSRD 37059
17-03-18 06:30:34.234 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:34.234 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:34.234 -07 000000592 INF: FPGA: Recv ZSGSRD 37059
17-03-18 06:30:34.244 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:34.244 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:34.244 -07 000000590 INF: FPGA: Recv ZSGSRD 37056
17-03-18 06:30:34.254 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:34.254 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:34.254 -07 000000438 INF: FPGA: Recv ZSGSRD 37061
17-03-18 06:30:34.264 -07 000000447 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:34.264 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:34.264 -07 000000590 INF: FPGA: Recv ZSGSRD 37067
17-03-18 06:30:34.274 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:34.274 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:34.274 -07 000000502 INF: FPGA: Recv ZSGSRD 37054
17-03-18 06:30:34.284 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:34.284 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:34.284 -07 000000590 INF: FPGA: Recv ZSGSRD 37060
17-03-18 06:30:34.294 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:34.294 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:34.294 -07 000000626 INF: FPGA: Recv ZSGSRD 37061
17-03-18 06:30:34.304 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:34.304 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:34.304 -07 000000382 INF: FPGA: Recv ZSGSRD 37064
17-03-18 06:30:34.314 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:34.314 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:30:34.314 -07 000000438 INF: FPGA: Recv ZPIEZORD 33253
17-03-18 06:30:34.324 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:30:34.324 -07 000000447 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -8.4 V.
17-03-18 06:30:34.324 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37061 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37060 (-177.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37054 (-177.5 uncal um), Max = 37068 (-177.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:30:34.324 -07 000000447 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37061, posNoise = 7, negNoise = 7
17-03-18 06:30:34.324 -07 000000447 INF: Z Motor: After move to -0.178398, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:30:34.324 -07 000000447 INF: Z Motor: Settle wait time = 4616 ms, measure time = 104 ms (allowed 150 ms), total time = 4720 ms
17-03-18 06:30:34.324 -07 000000447 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:30:34.374 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4775 ms
17-03-18 06:30:34.374 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:30:34.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:34.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:34.374 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:34.374 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:34.374 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:30:34.374 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:30:34.374 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:30:34.374 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:30:34.404 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 25 ms.
17-03-18 06:30:34.404 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:30:34.404 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:30:34.404 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:30:34.424 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:30:34.424 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 06:30:34.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:30:34.464 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:30:34.764 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:30:34.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:30:34.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:30:34.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-18 06:30:34.804 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:30:34.804 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:30:34.804 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:30:34.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 06:30:34.894 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:34.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:30:34.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 06:30:35.004 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:35.004 -07 000000424 INF: Image SNR check: start
17-03-18 06:30:35.004 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:35.014 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:30:35.014 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:30:35.024 -07 000000424 INF: Image SNR check: pass  [peak (Max-Min)=124.10]
17-03-18 06:30:35.024 -07 000000424 INF: Autofocus start
17-03-18 06:30:35.024 -07 000000424 INF: MeasureProfile start
17-03-18 06:30:35.034 -07 000000424 INF: MeasureProfile done
17-03-18 06:30:35.034 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:30:35.034 -07 000000424 INF: Autofocus finished
17-03-18 06:30:35.214 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:30:35.214 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 06:30:35.214 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9091796875, Z-position -0.178411078196938. ----------
17-03-18 06:30:35.224 -07 000000610 INF: Cycle	150	Tile	1	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:30:35.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37486, sync = True, waitForSettling = True)
17-03-18 06:30:35.224 -07 000000610 INF: Z Motor: Moving to -0.171600 mm, started at -0.178411 mm, distance = 6.81 um
17-03-18 06:30:35.224 -07 000000610 INF: FPGA: Xmit ZDACW 37486\n [Z Motor]
17-03-18 06:30:35.224 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:30:35.234 -07 000000610 INF: FPGA: 'ZDACW 37486' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:30:35.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:35.234 -07 000000626 INF: FPGA: Recv ZDACR 37486
17-03-18 06:30:35.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:35.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:30:35.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:35.394 -07 000000438 INF: FPGA: Recv ZSGSRD 36000
17-03-18 06:30:35.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:35.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:35.404 -07 000000382 INF: FPGA: Recv ZSGSRD 36004
17-03-18 06:30:35.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:35.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:35.414 -07 000000626 INF: FPGA: Recv ZSGSRD 35994
17-03-18 06:30:35.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:35.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:35.424 -07 000000590 INF: FPGA: Recv ZSGSRD 35999
17-03-18 06:30:35.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:35.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:35.434 -07 000000424 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:30:35.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:35.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:35.444 -07 000000382 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:30:35.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:35.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:35.454 -07 000000592 INF: FPGA: Recv ZSGSRD 35998
17-03-18 06:30:35.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:35.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:35.464 -07 000000438 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:30:35.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:35.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:35.474 -07 000000502 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:30:35.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:35.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:35.484 -07 000000438 INF: FPGA: Recv ZSGSRD 36006
17-03-18 06:30:35.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:35.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:30:35.494 -07 000000592 INF: FPGA: Recv ZPIEZORD 31850
17-03-18 06:30:35.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:35.504 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -9.2 V.
17-03-18 06:30:35.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36001 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36002 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35994 (-170.7 uncal um), Max = 36006 (-170.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:30:35.504 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36001, posNoise = 5, negNoise = 7
17-03-18 06:30:35.504 -07 000000610 INF: Z Motor: After move to -0.171600, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:30:35.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:30:35.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:35.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:35.504 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:35.504 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:30:35.504 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:30:35.504 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:35.504 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:30:35.504 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:30:35.504 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 06:30:35.504 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:30:35.504 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:30:35.504 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:30:35.514 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:30:35.514 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:30:35.524 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:30:35.524 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:30:35.534 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 06:30:35.534 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:30:35.534 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:30:35.534 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:30:35.544 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 06:30:35.544 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 06:30:35.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37663 150\n [Camera]
17-03-18 06:30:35.744 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:30:36.214 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:30:36.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:30:36.214 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:30:36.214 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:30:36.214 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 06:30:36.214 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:30:36.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:30:36.214 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:30:36.214 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:30:36.214 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 06:30:36.404 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37663 846
17-03-18 06:30:36.554 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:30:36.614 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:30:36.614 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:30:36.614 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:36.614 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:30:36.614 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:30:36.614 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:36.624 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:30:36.624 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:30:36.624 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:30:36.634 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:30:36.774 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:30:36.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:30:36.774 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:30:36.774 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:30:36.774 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2772078296, 0x0, 391868352) start.
17-03-18 06:30:36.774 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:30:36.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:30:36.774 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:30:36.924 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:30:36.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:30:36.934 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:30:36.934 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 592258248, 0x0, 418435064) start.
17-03-18 06:30:36.934 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.000345,
17-03-18 06:30:36.964 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:30:36.964 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:30:36.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37663 150' command took 2 ms to send, 1407 ms to get response, and 1418 ms overall
17-03-18 06:30:36.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:30:36.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9091796875, Z-Position -0.171601413326671. ------
17-03-18 06:30:36.974 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17781 mm
17-03-18 06:30:36.974 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:30:36.974 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:30:36.974 -07 000000487 INF: Y Motor: Moving to 60.7426 mm, started at 59.9092 mm, delta = 0.8334 mm
17-03-18 06:30:36.974 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 38843, sync = True, waitForSettling = False)
17-03-18 06:30:36.974 -07 000000592 INF: Z Motor: Moving to -0.177812 mm, started at -0.171601 mm, distance = -6.21 um
17-03-18 06:30:36.984 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:36.984 -07 000000590 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:30:36.994 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:30:36.994 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:36.994 -07 000000487 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:36.994 -07 000000487 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:30:36.994 -07 000000487 INF: Y Motor: Moving 1333 steps0
17-03-18 06:30:36.994 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:37.004 -07 000000592 INF: FPGA: Xmit ZDACW 38843\n [Z Motor]
17-03-18 06:30:37.004 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:30:37.004 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:30:37.014 -07 000000592 INF: FPGA: 'ZDACW 38843' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 06:30:37.014 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:30:37.024 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:30:37.034 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:37.034 -07 000000479 INF: FPGA: Recv ZDACR 38843
17-03-18 06:30:37.044 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:30:37.044 -07 000000592 INF: Z Motor: MoveAbsStepped took 63 ms (did NOT wait for settling yet))
17-03-18 06:30:37.194 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2772078296, 0x0, 391868352) end. Duration was 418 ms.
17-03-18 06:30:37.194 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-18 06:30:37.194 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:37.204 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:30:37.204 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 424 ms.
17-03-18 06:30:37.224 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:30:37.224 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:30:37.324 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 592258248, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:30:37.324 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:30:37.324 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:37.324 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:30:37.334 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 555 ms.
17-03-18 06:30:37.394 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:30:37.394 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 397 ms overall
17-03-18 06:30:37.434 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:37.434 -07 000000438 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:30:37.444 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:30:37.444 -07 000000487 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:37.444 -07 000000487 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:30:37.444 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.099 mm/sec
17-03-18 06:30:38.394 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:38.394 -07 000000502 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:30:38.404 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:38.404 -07 000000487 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:38.434 -07 000000487 INF: Y Motor: After move to 60.742607, error = -0.011162, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:30:38.434 -07 000000487 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:30:38.434 -07 000000487 INF: Y Motor: Moved to 60.7314 after 1459 ms (table move)
17-03-18 06:30:38.434 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177812 mm (DAC = 38843)
17-03-18 06:30:38.434 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:38.444 -07 000000382 INF: FPGA: Recv ZSGSRD 36972
17-03-18 06:30:38.444 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:30:38.444 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:38.444 -07 000000487 INF: FPGA: Recv ZSGSRD 36962
17-03-18 06:30:38.454 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:30:38.454 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:38.454 -07 000000502 INF: FPGA: Recv ZSGSRD 36957
17-03-18 06:30:38.464 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:38.464 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:38.464 -07 000000438 INF: FPGA: Recv ZSGSRD 36974
17-03-18 06:30:38.474 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:38.474 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:38.474 -07 000000382 INF: FPGA: Recv ZSGSRD 36973
17-03-18 06:30:38.484 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:38.484 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:38.484 -07 000000487 INF: FPGA: Recv ZSGSRD 36972
17-03-18 06:30:38.494 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:38.494 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:38.494 -07 000000447 INF: FPGA: Recv ZSGSRD 36969
17-03-18 06:30:38.504 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:38.504 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:38.504 -07 000000502 INF: FPGA: Recv ZSGSRD 36970
17-03-18 06:30:38.514 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:38.514 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:38.514 -07 000000592 INF: FPGA: Recv ZSGSRD 36968
17-03-18 06:30:38.524 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:38.524 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:38.524 -07 000000487 INF: FPGA: Recv ZSGSRD 36958
17-03-18 06:30:38.534 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:38.534 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:30:38.534 -07 000000438 INF: FPGA: Recv ZPIEZORD 33125
17-03-18 06:30:38.544 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:38.544 -07 000000606 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.5 V.
17-03-18 06:30:38.544 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36968 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36970 (-176.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36957 (-176.8 uncal um), Max = 36974 (-177.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:30:38.544 -07 000000606 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36968, posNoise = 6, negNoise = 11
17-03-18 06:30:38.544 -07 000000606 INF: Z Motor: After move to -0.177812, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:30:38.544 -07 000000606 INF: Z Motor: Settle wait time = 1461 ms, measure time = 102 ms (allowed 150 ms), total time = 1563 ms
17-03-18 06:30:38.544 -07 000000606 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:30:38.594 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 06:30:38.594 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:30:38.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:38.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:38.594 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:38.594 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:38.594 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:30:38.594 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:30:38.594 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:30:38.594 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:30:38.604 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:30:38.604 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:30:38.614 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:30:38.614 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:30:38.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:30:38.664 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:30:38.964 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:30:38.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:30:38.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:30:38.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 06:30:39.004 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:30:39.004 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 06:30:39.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 06:30:39.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:30:39.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:39.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:30:39.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:30:39.104 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:39.104 -07 000000592 INF: Autofocus start
17-03-18 06:30:39.104 -07 000000592 INF: MeasureProfile start
17-03-18 06:30:39.104 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:39.114 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:30:39.114 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:30:39.114 -07 000000592 INF: MeasureProfile done
17-03-18 06:30:39.114 -07 000000592 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:30:39.114 -07 000000592 INF: Autofocus finished
17-03-18 06:30:39.314 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:30:39.314 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 06:30:39.314 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7314453125, Z-position -0.177813626467754. ----------
17-03-18 06:30:39.324 -07 000000610 INF: Cycle	150	Tile	2	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:30:39.324 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37358, sync = True, waitForSettling = True)
17-03-18 06:30:39.324 -07 000000610 INF: Z Motor: Moving to -0.171014 mm, started at -0.177814 mm, distance = 6.80 um
17-03-18 06:30:39.324 -07 000000610 INF: FPGA: Xmit ZDACW 37358\n [Z Motor]
17-03-18 06:30:39.324 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 06:30:39.334 -07 000000610 INF: FPGA: 'ZDACW 37358' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:30:39.334 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:39.334 -07 000000502 INF: FPGA: Recv ZDACR 37358
17-03-18 06:30:39.344 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:39.344 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:30:39.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:39.494 -07 000000447 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:30:39.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:39.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:39.504 -07 000000502 INF: FPGA: Recv ZSGSRD 35921
17-03-18 06:30:39.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:39.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:39.514 -07 000000592 INF: FPGA: Recv ZSGSRD 35908
17-03-18 06:30:39.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:39.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:39.524 -07 000000502 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:30:39.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:39.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:39.534 -07 000000487 INF: FPGA: Recv ZSGSRD 35914
17-03-18 06:30:39.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:39.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:39.544 -07 000000447 INF: FPGA: Recv ZSGSRD 35918
17-03-18 06:30:39.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:39.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:39.554 -07 000000487 INF: FPGA: Recv ZSGSRD 35912
17-03-18 06:30:39.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:39.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:39.564 -07 000000382 INF: FPGA: Recv ZSGSRD 35915
17-03-18 06:30:39.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:39.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:39.574 -07 000000592 INF: FPGA: Recv ZSGSRD 35907
17-03-18 06:30:39.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:39.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:39.584 -07 000000447 INF: FPGA: Recv ZSGSRD 35914
17-03-18 06:30:39.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:39.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:30:39.594 -07 000000424 INF: FPGA: Recv ZPIEZORD 31754
17-03-18 06:30:39.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:39.604 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.2 V.
17-03-18 06:30:39.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35913 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35913 (-170.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35906 (-170.1 uncal um), Max = 35921 (-170.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:30:39.604 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35913, posNoise = 8, negNoise = 7
17-03-18 06:30:39.604 -07 000000610 INF: Z Motor: After move to -0.171014, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:30:39.604 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:30:39.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:39.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:39.604 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:30:39.604 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:39.604 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:39.604 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:30:39.604 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:30:39.604 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:30:39.604 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:30:39.604 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:30:39.604 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:30:39.604 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:30:39.604 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:30:39.604 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:30:39.604 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:30:39.604 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:30:39.614 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:30:39.614 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:30:39.624 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:30:39.624 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:30:39.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37534 150\n [Camera]
17-03-18 06:30:39.824 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:30:40.284 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:30:40.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:30:40.284 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:30:40.284 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:30:40.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:30:40.284 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:30:40.294 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:30:40.294 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-18 06:30:40.294 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:30:40.294 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-18 06:30:40.474 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37534 846
17-03-18 06:30:40.624 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:30:40.684 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:30:40.684 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:30:40.684 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:40.694 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:30:40.694 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:30:40.694 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:30:40.694 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:30:40.694 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:40.694 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:30:40.704 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:30:40.844 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:30:40.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:30:40.844 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:30:40.854 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:30:40.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:30:40.854 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:30:40.964 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:30:40.964 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 06:30:40.974 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:30:40.974 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:30:41.034 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:30:41.044 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:30:41.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37534 150' command took 2 ms to send, 1410 ms to get response, and 1417 ms overall
17-03-18 06:30:41.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:30:41.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7314453125, Z-Position -0.171036082658196. ------
17-03-18 06:30:41.044 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:41.044 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17786 mm
17-03-18 06:30:41.044 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:30:41.044 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:30:41.044 -07 000000382 INF: Y Motor: Moving to 61.5726 mm, started at 60.7314 mm, delta = 0.8412 mm
17-03-18 06:30:41.044 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38853, sync = True, waitForSettling = False)
17-03-18 06:30:41.044 -07 000000438 INF: Z Motor: Moving to -0.177858 mm, started at -0.171036 mm, distance = -6.82 um
17-03-18 06:30:41.044 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:41.054 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:41.054 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:30:41.054 -07 000000479 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:30:41.064 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:30:41.064 -07 000000382 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:41.064 -07 000000438 INF: FPGA: Xmit ZDACW 38853\n [Z Motor]
17-03-18 06:30:41.064 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:30:41.064 -07 000000382 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:30:41.064 -07 000000382 INF: Y Motor: Moving 1345 steps-23
17-03-18 06:30:41.074 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:30:41.074 -07 000000438 INF: FPGA: 'ZDACW 38853' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:30:41.084 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:30:41.094 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:41.094 -07 000000447 INF: FPGA: Recv ZDACR 38853
17-03-18 06:30:41.104 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:30:41.104 -07 000000438 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:30:41.274 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:30:41.274 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:30:41.374 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:30:41.374 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:30:41.374 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:41.374 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:30:41.374 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:30:41.374 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:41.374 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:30:41.374 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 06:30:41.374 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:30:41.384 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 530 ms.
17-03-18 06:30:41.454 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:30:41.454 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:30:41.504 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:41.514 -07 000000512 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:30:41.514 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:30:41.514 -07 000000382 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:41.514 -07 000000382 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:30:41.514 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.135 mm/sec
17-03-18 06:30:41.864 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:30:41.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:30:42.304 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.020806,
17-03-18 06:30:42.464 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:42.464 -07 000000626 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:30:42.474 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:42.474 -07 000000382 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:42.504 -07 000000382 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:30:42.504 -07 000000382 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:30:42.504 -07 000000382 INF: Y Motor: Moved to 61.5625 after 1456 ms (table move)
17-03-18 06:30:42.504 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177858 mm (DAC = 38853)
17-03-18 06:30:42.504 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:42.514 -07 000000424 INF: FPGA: Recv ZSGSRD 36978
17-03-18 06:30:42.514 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:30:42.514 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:42.514 -07 000000382 INF: FPGA: Recv ZSGSRD 36973
17-03-18 06:30:42.524 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:42.524 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:42.524 -07 000000382 INF: FPGA: Recv ZSGSRD 36981
17-03-18 06:30:42.534 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:42.534 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:42.534 -07 000000382 INF: FPGA: Recv ZSGSRD 36976
17-03-18 06:30:42.544 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:42.544 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:42.544 -07 000000382 INF: FPGA: Recv ZSGSRD 36976
17-03-18 06:30:42.554 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:42.554 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:42.554 -07 000000479 INF: FPGA: Recv ZSGSRD 36976
17-03-18 06:30:42.564 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:42.564 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:42.564 -07 000000479 INF: FPGA: Recv ZSGSRD 36974
17-03-18 06:30:42.574 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:42.574 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:42.574 -07 000000479 INF: FPGA: Recv ZSGSRD 36973
17-03-18 06:30:42.584 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:42.584 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:42.584 -07 000000424 INF: FPGA: Recv ZSGSRD 36974
17-03-18 06:30:42.594 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:42.594 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:42.594 -07 000000424 INF: FPGA: Recv ZSGSRD 36975
17-03-18 06:30:42.604 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:42.604 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:30:42.604 -07 000000424 INF: FPGA: Recv ZPIEZORD 33182
17-03-18 06:30:42.614 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:42.614 -07 000000502 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.4 V.
17-03-18 06:30:42.614 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36976 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36976 (-177.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36973 (-177.0 uncal um), Max = 36981 (-177.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:30:42.614 -07 000000502 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36976, posNoise = 5, negNoise = 3
17-03-18 06:30:42.614 -07 000000502 INF: Z Motor: After move to -0.177858, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:30:42.614 -07 000000502 INF: Z Motor: Settle wait time = 1459 ms, measure time = 103 ms (allowed 150 ms), total time = 1562 ms
17-03-18 06:30:42.614 -07 000000502 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:30:42.664 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 06:30:42.664 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:30:42.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:42.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:42.664 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:30:42.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:30:42.664 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:42.664 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:42.674 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:30:42.674 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:30:42.674 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:30:42.674 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:30:42.674 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:30:42.674 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:30:42.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:30:42.724 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:30:43.024 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:30:43.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:30:43.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:30:43.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2581692120, 0x0, 559484976) start.
17-03-18 06:30:43.064 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:30:43.064 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 06:30:43.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:30:43.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2581692120, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:30:43.144 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:43.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:30:43.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:30:43.164 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:43.164 -07 000000502 INF: Autofocus start
17-03-18 06:30:43.164 -07 000000502 INF: MeasureProfile start
17-03-18 06:30:43.164 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:43.174 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:30:43.174 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:30:43.174 -07 000000502 INF: MeasureProfile done
17-03-18 06:30:43.174 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:30:43.174 -07 000000502 INF: Autofocus finished
17-03-18 06:30:43.374 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:30:43.374 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:30:43.374 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.177865020164888. ----------
17-03-18 06:30:43.374 -07 000000610 INF: Cycle	150	Tile	3	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:30:43.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37350, sync = True, waitForSettling = True)
17-03-18 06:30:43.384 -07 000000610 INF: Z Motor: Moving to -0.170977 mm, started at -0.177865 mm, distance = 6.89 um
17-03-18 06:30:43.384 -07 000000610 INF: FPGA: Xmit ZDACW 37350\n [Z Motor]
17-03-18 06:30:43.384 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:30:43.394 -07 000000610 INF: FPGA: 'ZDACW 37350' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:43.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:43.394 -07 000000626 INF: FPGA: Recv ZDACR 37350
17-03-18 06:30:43.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:43.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:30:43.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:43.554 -07 000000502 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:30:43.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:43.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:43.564 -07 000000626 INF: FPGA: Recv ZSGSRD 35903
17-03-18 06:30:43.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:43.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:43.574 -07 000000502 INF: FPGA: Recv ZSGSRD 35908
17-03-18 06:30:43.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:43.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:43.584 -07 000000382 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:30:43.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:43.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:43.594 -07 000000479 INF: FPGA: Recv ZSGSRD 35914
17-03-18 06:30:43.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:43.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:43.604 -07 000000512 INF: FPGA: Recv ZSGSRD 35907
17-03-18 06:30:43.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:43.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:43.614 -07 000000479 INF: FPGA: Recv ZSGSRD 35902
17-03-18 06:30:43.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:43.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:43.624 -07 000000512 INF: FPGA: Recv ZSGSRD 35909
17-03-18 06:30:43.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:43.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:43.634 -07 000000447 INF: FPGA: Recv ZSGSRD 35913
17-03-18 06:30:43.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:43.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:43.644 -07 000000479 INF: FPGA: Recv ZSGSRD 35909
17-03-18 06:30:43.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:43.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:30:43.654 -07 000000447 INF: FPGA: Recv ZPIEZORD 31710
17-03-18 06:30:43.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:43.664 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.3 V.
17-03-18 06:30:43.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35908 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35908 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35902 (-170.1 uncal um), Max = 35914 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:30:43.664 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35908, posNoise = 6, negNoise = 6
17-03-18 06:30:43.664 -07 000000610 INF: Z Motor: After move to -0.170977, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:30:43.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:30:43.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:43.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:43.664 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:43.664 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:43.664 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:30:43.664 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:30:43.664 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:30:43.664 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:30:43.664 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:30:43.664 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:30:43.664 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:30:43.664 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:30:43.664 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:30:43.664 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:30:43.664 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:30:43.664 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:30:43.674 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:30:43.674 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:30:43.674 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:30:43.674 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:30:43.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37527 150\n [Camera]
17-03-18 06:30:43.884 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:30:44.344 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:30:44.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:30:44.344 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:30:44.344 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:30:44.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:30:44.344 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:30:44.344 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:30:44.344 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2600773504, 0x0, 391868352) start.
17-03-18 06:30:44.354 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:30:44.354 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 06:30:44.534 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37527 846
17-03-18 06:30:44.684 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:30:44.744 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2600773504, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:30:44.744 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:30:44.744 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:44.744 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:30:44.744 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:30:44.744 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:30:44.744 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:30:44.744 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:44.754 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:30:44.754 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:30:44.904 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:30:44.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:30:44.904 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:30:44.904 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:30:44.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:30:44.914 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:30:44.914 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:30:44.914 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) start.
17-03-18 06:30:44.914 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:30:44.914 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:30:45.094 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:30:45.094 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:30:45.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37527 150' command took 3 ms to send, 1408 ms to get response, and 1418 ms overall
17-03-18 06:30:45.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:30:45.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.171003961597487. ------
17-03-18 06:30:45.104 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:45.104 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17715 mm
17-03-18 06:30:45.104 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:30:45.104 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:30:45.104 -07 000000438 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 06:30:45.104 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:45.114 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:30:45.114 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:45.114 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38698, sync = True, waitForSettling = False)
17-03-18 06:30:45.114 -07 000000447 INF: Z Motor: Moving to -0.177148 mm, started at -0.171004 mm, distance = -6.14 um
17-03-18 06:30:45.114 -07 000000487 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:30:45.124 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:45.124 -07 000000438 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:45.124 -07 000000438 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:30:45.124 -07 000000438 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:30:45.124 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:30:45.134 -07 000000447 INF: FPGA: Xmit ZDACW 38698\n [Z Motor]
17-03-18 06:30:45.134 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 06:30:45.144 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:30:45.144 -07 000000447 INF: FPGA: 'ZDACW 38698' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:30:45.154 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:45.154 -07 000000626 INF: FPGA: Recv ZDACR 38698
17-03-18 06:30:45.164 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:30:45.164 -07 000000447 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 06:30:45.314 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:30:45.314 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:30:45.314 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:45.314 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:30:45.314 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:30:45.314 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:45.314 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:30:45.314 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:30:45.314 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:30:45.324 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:30:45.324 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:30:45.324 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:30:45.514 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:30:45.514 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:30:45.574 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:45.574 -07 000000590 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:30:45.584 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:45.584 -07 000000438 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:45.584 -07 000000438 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:30:45.584 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 06:30:46.534 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:46.534 -07 000000512 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:30:46.544 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:46.544 -07 000000438 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:46.574 -07 000000438 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:30:46.574 -07 000000438 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:30:46.574 -07 000000438 INF: Y Motor: Moved to 62.3945 after 1462 ms (table move)
17-03-18 06:30:46.574 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177148 mm (DAC = 38698)
17-03-18 06:30:46.574 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:46.574 -07 000000590 INF: FPGA: Recv ZSGSRD 36876
17-03-18 06:30:46.584 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:30:46.584 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:46.584 -07 000000438 INF: FPGA: Recv ZSGSRD 36864
17-03-18 06:30:46.594 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:46.594 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:46.594 -07 000000438 INF: FPGA: Recv ZSGSRD 36864
17-03-18 06:30:46.604 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:46.604 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:46.604 -07 000000447 INF: FPGA: Recv ZSGSRD 36859
17-03-18 06:30:46.614 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:46.614 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:46.614 -07 000000447 INF: FPGA: Recv ZSGSRD 36865
17-03-18 06:30:46.624 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:46.624 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:46.624 -07 000000479 INF: FPGA: Recv ZSGSRD 36869
17-03-18 06:30:46.634 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:46.634 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:46.634 -07 000000479 INF: FPGA: Recv ZSGSRD 36862
17-03-18 06:30:46.644 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:46.644 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:46.644 -07 000000479 INF: FPGA: Recv ZSGSRD 36873
17-03-18 06:30:46.654 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:46.654 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:46.654 -07 000000487 INF: FPGA: Recv ZSGSRD 36865
17-03-18 06:30:46.664 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:46.664 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:46.664 -07 000000487 INF: FPGA: Recv ZSGSRD 36867
17-03-18 06:30:46.674 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:46.674 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:30:46.674 -07 000000447 INF: FPGA: Recv ZPIEZORD 33039
17-03-18 06:30:46.684 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:46.684 -07 000000382 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.905 V. Piezo Error = -8.5 V.
17-03-18 06:30:46.684 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36866 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36865 (-176.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36859 (-176.2 uncal um), Max = 36876 (-176.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:30:46.684 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36866, posNoise = 10, negNoise = 7
17-03-18 06:30:46.684 -07 000000382 INF: Z Motor: After move to -0.177148, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:30:46.684 -07 000000382 INF: Z Motor: Settle wait time = 1464 ms, measure time = 105 ms (allowed 150 ms), total time = 1569 ms
17-03-18 06:30:46.684 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:30:46.734 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 06:30:46.734 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:30:46.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:46.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:46.734 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:46.734 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:46.734 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:30:46.734 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:30:46.734 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:30:46.734 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:30:46.744 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:30:46.744 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:30:46.754 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:30:46.754 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:30:46.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:30:46.804 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:30:46.864 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:30:46.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:30:47.094 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:30:47.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:30:47.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:30:47.214 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:30:47.214 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 06:30:47.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 454 ms to get response, and 459 ms overall
17-03-18 06:30:47.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 06:30:47.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:30:47.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:47.334 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:30:47.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 230 ms.
17-03-18 06:30:47.414 -07 000000561 INF: Autofocus start
17-03-18 06:30:47.414 -07 000000561 INF: MeasureProfile start
17-03-18 06:30:47.414 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:47.414 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:47.424 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:30:47.424 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:30:47.424 -07 000000561 INF: MeasureProfile done
17-03-18 06:30:47.424 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:30:47.424 -07 000000561 INF: Autofocus finished
17-03-18 06:30:47.624 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:30:47.624 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:30:47.624 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.177158356829294. ----------
17-03-18 06:30:47.624 -07 000000610 INF: Cycle	150	Tile	4	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:30:47.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37231, sync = True, waitForSettling = True)
17-03-18 06:30:47.634 -07 000000610 INF: Z Motor: Moving to -0.170433 mm, started at -0.177158 mm, distance = 6.73 um
17-03-18 06:30:47.634 -07 000000610 INF: FPGA: Xmit ZDACW 37231\n [Z Motor]
17-03-18 06:30:47.634 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:30:47.644 -07 000000610 INF: FPGA: 'ZDACW 37231' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:47.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:47.644 -07 000000447 INF: FPGA: Recv ZDACR 37231
17-03-18 06:30:47.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:47.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:30:47.674 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.015368,
17-03-18 06:30:47.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:47.804 -07 000000487 INF: FPGA: Recv ZSGSRD 35819
17-03-18 06:30:47.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:47.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:47.814 -07 000000487 INF: FPGA: Recv ZSGSRD 35816
17-03-18 06:30:47.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:47.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:47.824 -07 000000487 INF: FPGA: Recv ZSGSRD 35820
17-03-18 06:30:47.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:47.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:47.834 -07 000000487 INF: FPGA: Recv ZSGSRD 35819
17-03-18 06:30:47.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:47.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:47.844 -07 000000487 INF: FPGA: Recv ZSGSRD 35820
17-03-18 06:30:47.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:47.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:47.854 -07 000000382 INF: FPGA: Recv ZSGSRD 35820
17-03-18 06:30:47.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:47.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:47.864 -07 000000382 INF: FPGA: Recv ZSGSRD 35819
17-03-18 06:30:47.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:47.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:47.874 -07 000000438 INF: FPGA: Recv ZSGSRD 35820
17-03-18 06:30:47.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:47.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:47.884 -07 000000438 INF: FPGA: Recv ZSGSRD 35819
17-03-18 06:30:47.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:47.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:47.894 -07 000000438 INF: FPGA: Recv ZSGSRD 35823
17-03-18 06:30:47.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:47.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:30:47.904 -07 000000438 INF: FPGA: Recv ZPIEZORD 31635
17-03-18 06:30:47.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:47.914 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.681 V. Piezo Error = -9.2 V.
17-03-18 06:30:47.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35820 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35820 (-169.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35816 (-169.5 uncal um), Max = 35823 (-169.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:30:47.914 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35820, posNoise = 3, negNoise = 4
17-03-18 06:30:47.914 -07 000000610 INF: Z Motor: After move to -0.170433, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:30:47.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:30:47.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:47.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:47.914 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:47.914 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:47.914 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:30:47.914 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:30:47.914 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:30:47.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:30:47.914 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:30:47.914 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:30:47.914 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:30:47.914 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:30:47.914 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:30:47.924 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:30:47.924 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:30:47.924 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:30:47.924 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:30:47.924 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:30:47.924 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:30:47.924 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:30:47.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37408 150\n [Camera]
17-03-18 06:30:48.134 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:30:48.594 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:30:48.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:30:48.594 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:30:48.594 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:30:48.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:30:48.594 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:30:48.604 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:30:48.604 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2560411752, 0x0, 391868352) start.
17-03-18 06:30:48.604 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:30:48.604 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2595834016, 0x0, 418435064) start.
17-03-18 06:30:48.784 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37408 846
17-03-18 06:30:48.934 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:30:48.974 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2560411752, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:30:48.974 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:30:48.974 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:48.974 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2595834016, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:30:48.974 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:30:48.974 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:48.984 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:30:48.984 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:30:48.984 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:30:48.994 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:30:49.154 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:30:49.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:30:49.164 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:30:49.164 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:30:49.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:30:49.164 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:30:49.274 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:30:49.274 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 06:30:49.274 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:30:49.274 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 06:30:49.354 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:30:49.354 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:30:49.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37408 150' command took 2 ms to send, 1411 ms to get response, and 1418 ms overall
17-03-18 06:30:49.354 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:30:49.354 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.170438630929012. ------
17-03-18 06:30:49.354 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:49.354 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17673 mm
17-03-18 06:30:49.354 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:30:49.364 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:49.364 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:30:49.364 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:30:49.364 -07 000000438 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 06:30:49.364 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:30:49.364 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38608, sync = True, waitForSettling = False)
17-03-18 06:30:49.364 -07 000000487 INF: Z Motor: Moving to -0.176736 mm, started at -0.170439 mm, distance = -6.30 um
17-03-18 06:30:49.374 -07 000000487 INF: FPGA: Xmit ZDACW 38608\n [Z Motor]
17-03-18 06:30:49.374 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:30:49.384 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:49.384 -07 000000487 INF: FPGA: 'ZDACW 38608' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:30:49.384 -07 000000590 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:30:49.394 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:30:49.394 -07 000000438 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:49.394 -07 000000438 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:30:49.394 -07 000000438 INF: Y Motor: Moving 1341 steps-18
17-03-18 06:30:49.394 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:49.394 -07 000000590 INF: FPGA: Recv ZDACR 38608
17-03-18 06:30:49.404 -07 000000487 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:30:49.404 -07 000000487 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 06:30:49.404 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:30:49.564 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:30:49.564 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:30:49.664 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 06:30:49.664 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:30:49.664 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:49.674 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:30:49.674 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:30:49.674 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:30:49.674 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:49.674 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:30:49.674 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 06:30:49.674 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 06:30:49.774 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:30:49.774 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:30:49.834 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:49.834 -07 000000590 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:30:49.844 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:49.844 -07 000000438 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:49.844 -07 000000438 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:30:49.844 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-18 06:30:50.794 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:50.794 -07 000000487 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:30:50.804 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:50.804 -07 000000438 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:50.834 -07 000000438 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:30:50.834 -07 000000438 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:30:50.834 -07 000000438 INF: Y Motor: Moved to 63.2227 after 1472 ms (table move)
17-03-18 06:30:50.834 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176736 mm (DAC = 38608)
17-03-18 06:30:50.834 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:50.844 -07 000000447 INF: FPGA: Recv ZSGSRD 36805
17-03-18 06:30:50.844 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:30:50.844 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:50.844 -07 000000487 INF: FPGA: Recv ZSGSRD 36804
17-03-18 06:30:50.854 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:30:50.854 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:50.854 -07 000000606 INF: FPGA: Recv ZSGSRD 36801
17-03-18 06:30:50.864 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:50.864 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:50.864 -07 000000479 INF: FPGA: Recv ZSGSRD 36806
17-03-18 06:30:50.874 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:50.874 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:50.874 -07 000000447 INF: FPGA: Recv ZSGSRD 36799
17-03-18 06:30:50.884 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:50.884 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:50.884 -07 000000590 INF: FPGA: Recv ZSGSRD 36798
17-03-18 06:30:50.894 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:50.894 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:50.894 -07 000000502 INF: FPGA: Recv ZSGSRD 36797
17-03-18 06:30:50.904 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:50.904 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:50.904 -07 000000606 INF: FPGA: Recv ZSGSRD 36798
17-03-18 06:30:50.914 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:50.914 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:50.914 -07 000000502 INF: FPGA: Recv ZSGSRD 36803
17-03-18 06:30:50.924 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:50.924 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:50.924 -07 000000447 INF: FPGA: Recv ZSGSRD 36801
17-03-18 06:30:50.934 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:50.934 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:30:50.934 -07 000000502 INF: FPGA: Recv ZPIEZORD 32949
17-03-18 06:30:50.944 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:50.944 -07 000000382 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.891 V. Piezo Error = -8.5 V.
17-03-18 06:30:50.944 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36801 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36801 (-175.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36797 (-175.8 uncal um), Max = 36806 (-175.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:30:50.944 -07 000000382 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36801, posNoise = 5, negNoise = 4
17-03-18 06:30:50.944 -07 000000382 INF: Z Motor: After move to -0.176736, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:30:50.944 -07 000000382 INF: Z Motor: Settle wait time = 1476 ms, measure time = 103 ms (allowed 150 ms), total time = 1579 ms
17-03-18 06:30:50.944 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:30:50.994 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 06:30:50.994 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:30:50.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:50.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:50.994 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:50.994 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:50.994 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:30:50.994 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:30:50.994 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:30:51.004 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:30:51.004 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:30:51.004 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:30:51.014 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:30:51.014 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:30:51.014 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:30:51.054 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:30:51.354 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:30:51.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:30:51.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:30:51.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) start.
17-03-18 06:30:51.394 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:30:51.394 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:30:51.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:30:51.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:30:51.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:51.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:30:51.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:30:51.494 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:51.494 -07 000000502 INF: Autofocus start
17-03-18 06:30:51.494 -07 000000502 INF: MeasureProfile start
17-03-18 06:30:51.494 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:51.504 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:30:51.504 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:30:51.504 -07 000000502 INF: MeasureProfile done
17-03-18 06:30:51.504 -07 000000502 INF: X=64  Z correction [um]=0.2557664
17-03-18 06:30:51.504 -07 000000502 INF: Autofocus finished
17-03-18 06:30:51.704 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:30:51.704 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:30:51.704 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.17674078304008. ----------
17-03-18 06:30:51.704 -07 000000610 INF: Cycle	150	Tile	5	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:30:51.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37176, sync = True, waitForSettling = True)
17-03-18 06:30:51.714 -07 000000610 INF: Z Motor: Moving to -0.170181 mm, started at -0.176741 mm, distance = 6.56 um
17-03-18 06:30:51.714 -07 000000610 INF: FPGA: Xmit ZDACW 37176\n [Z Motor]
17-03-18 06:30:51.714 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 06:30:51.724 -07 000000610 INF: FPGA: 'ZDACW 37176' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:30:51.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:51.724 -07 000000479 INF: FPGA: Recv ZDACR 37176
17-03-18 06:30:51.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:51.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:30:51.864 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:30:51.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:30:51.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:51.884 -07 000000424 INF: FPGA: Recv ZSGSRD 35779
17-03-18 06:30:51.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:51.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:51.894 -07 000000487 INF: FPGA: Recv ZSGSRD 35782
17-03-18 06:30:51.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:51.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:51.904 -07 000000447 INF: FPGA: Recv ZSGSRD 35783
17-03-18 06:30:51.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:51.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:51.914 -07 000000487 INF: FPGA: Recv ZSGSRD 35782
17-03-18 06:30:51.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:51.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:51.924 -07 000000447 INF: FPGA: Recv ZSGSRD 35783
17-03-18 06:30:51.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:51.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:51.934 -07 000000424 INF: FPGA: Recv ZSGSRD 35781
17-03-18 06:30:51.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:51.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:51.944 -07 000000447 INF: FPGA: Recv ZSGSRD 35783
17-03-18 06:30:51.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:51.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:51.954 -07 000000424 INF: FPGA: Recv ZSGSRD 35785
17-03-18 06:30:51.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:51.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:51.964 -07 000000487 INF: FPGA: Recv ZSGSRD 35779
17-03-18 06:30:51.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:51.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:51.974 -07 000000382 INF: FPGA: Recv ZSGSRD 35778
17-03-18 06:30:51.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:51.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:30:51.984 -07 000000502 INF: FPGA: Recv ZPIEZORD 31561
17-03-18 06:30:51.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:51.994 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.673 V. Piezo Error = -9.3 V.
17-03-18 06:30:51.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35782 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35782 (-169.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35778 (-169.3 uncal um), Max = 35785 (-169.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:30:51.994 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35782, posNoise = 3, negNoise = 4
17-03-18 06:30:51.994 -07 000000610 INF: Z Motor: After move to -0.170181, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:30:51.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:30:51.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:51.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:51.994 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:30:51.994 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:30:51.994 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:51.994 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:30:51.994 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:30:51.994 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:51.994 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:30:51.994 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:30:51.994 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:30:51.994 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:30:52.004 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:30:52.004 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:30:52.004 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:30:52.004 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:30:52.014 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:30:52.014 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:30:52.014 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:30:52.014 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:30:52.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37353 150\n [Camera]
17-03-18 06:30:52.214 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:30:52.674 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:30:52.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:30:52.674 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:30:52.674 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:30:52.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:30:52.684 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:30:52.684 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:30:52.684 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2554546280, 0x0, 391868352) start.
17-03-18 06:30:52.684 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:30:52.684 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2589968544, 0x0, 418435064) start.
17-03-18 06:30:52.864 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37353 846
17-03-18 06:30:53.024 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1000
17-03-18 06:30:53.044 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.028963,
17-03-18 06:30:53.074 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2589968544, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:30:53.074 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:30:53.074 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:53.074 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2554546280, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:30:53.074 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:30:53.074 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:53.074 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:30:53.074 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:30:53.074 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:30:53.084 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:30:53.244 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1219
17-03-18 06:30:53.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1219
17-03-18 06:30:53.244 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:30:53.244 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1220
17-03-18 06:30:53.244 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:30:53.244 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:30:53.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1220
17-03-18 06:30:53.244 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:30:53.244 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:30:53.244 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) start.
17-03-18 06:30:53.434 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:30:53.434 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:30:53.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37353 150' command took 2 ms to send, 1413 ms to get response, and 1418 ms overall
17-03-18 06:30:53.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:30:53.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.170194510867626. ------
17-03-18 06:30:53.434 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:53.434 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17653 mm
17-03-18 06:30:53.434 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:30:53.444 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:53.444 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:30:53.444 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:30:53.444 -07 000000590 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 06:30:53.444 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:53.444 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38563, sync = True, waitForSettling = False)
17-03-18 06:30:53.444 -07 000000502 INF: Z Motor: Moving to -0.176530 mm, started at -0.170195 mm, distance = -6.34 um
17-03-18 06:30:53.444 -07 000000592 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:30:53.454 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:30:53.454 -07 000000590 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:53.454 -07 000000590 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:30:53.454 -07 000000590 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:30:53.454 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:30:53.464 -07 000000502 INF: FPGA: Xmit ZDACW 38563\n [Z Motor]
17-03-18 06:30:53.464 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:30:53.474 -07 000000502 INF: FPGA: 'ZDACW 38563' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:30:53.474 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:30:53.484 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:53.484 -07 000000438 INF: FPGA: Recv ZDACR 38563
17-03-18 06:30:53.494 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:30:53.494 -07 000000502 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 06:30:53.644 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:30:53.644 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:30:53.644 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:53.654 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:30:53.654 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:30:53.654 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:53.654 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:30:53.654 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 06:30:53.654 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:30:53.654 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:30:53.654 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:30:53.664 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:30:53.844 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 06:30:53.844 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 06:30:53.904 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:53.904 -07 000000479 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:30:53.914 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:53.914 -07 000000590 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:53.914 -07 000000590 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 06:30:53.914 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 06:30:54.864 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:54.864 -07 000000447 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:30:54.874 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:54.874 -07 000000590 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:54.904 -07 000000590 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:30:54.904 -07 000000590 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:30:54.904 -07 000000590 INF: Y Motor: Moved to 64.0557 after 1457 ms (table move)
17-03-18 06:30:54.904 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176530 mm (DAC = 38563)
17-03-18 06:30:54.904 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:54.904 -07 000000438 INF: FPGA: Recv ZSGSRD 36770
17-03-18 06:30:54.914 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:30:54.914 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:54.914 -07 000000447 INF: FPGA: Recv ZSGSRD 36768
17-03-18 06:30:54.924 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:54.924 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:54.924 -07 000000382 INF: FPGA: Recv ZSGSRD 36769
17-03-18 06:30:54.934 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:54.934 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:54.934 -07 000000590 INF: FPGA: Recv ZSGSRD 36760
17-03-18 06:30:54.944 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:54.944 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:54.944 -07 000000606 INF: FPGA: Recv ZSGSRD 36767
17-03-18 06:30:54.954 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:54.954 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:54.954 -07 000000438 INF: FPGA: Recv ZSGSRD 36767
17-03-18 06:30:54.964 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:54.964 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:54.964 -07 000000487 INF: FPGA: Recv ZSGSRD 36771
17-03-18 06:30:54.974 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:54.974 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:54.974 -07 000000590 INF: FPGA: Recv ZSGSRD 36777
17-03-18 06:30:54.984 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:54.984 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:54.984 -07 000000447 INF: FPGA: Recv ZSGSRD 36773
17-03-18 06:30:54.994 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:54.994 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:54.994 -07 000000487 INF: FPGA: Recv ZSGSRD 36766
17-03-18 06:30:55.004 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:55.004 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:30:55.004 -07 000000606 INF: FPGA: Recv ZPIEZORD 32930
17-03-18 06:30:55.014 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:55.014 -07 000000424 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.884 V. Piezo Error = -8.5 V.
17-03-18 06:30:55.014 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36769 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36768 (-175.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36760 (-175.6 uncal um), Max = 36777 (-175.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:30:55.014 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36769, posNoise = 8, negNoise = 9
17-03-18 06:30:55.014 -07 000000424 INF: Z Motor: After move to -0.176530, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:30:55.014 -07 000000424 INF: Z Motor: Settle wait time = 1460 ms, measure time = 107 ms (allowed 150 ms), total time = 1567 ms
17-03-18 06:30:55.014 -07 000000424 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:30:55.064 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 06:30:55.064 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:30:55.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:55.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:55.064 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:55.064 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:55.064 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:30:55.064 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:30:55.064 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:30:55.064 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:30:55.074 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:30:55.074 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:30:55.084 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:30:55.084 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:30:55.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:30:55.134 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:30:55.434 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:30:55.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:30:55.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:30:55.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2642265872, 0x0, 559484976) start.
17-03-18 06:30:55.464 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:30:55.474 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:30:55.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:30:55.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2642265872, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:30:55.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:55.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:30:55.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:30:55.574 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:55.574 -07 000000424 INF: Autofocus start
17-03-18 06:30:55.574 -07 000000424 INF: MeasureProfile start
17-03-18 06:30:55.574 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:55.584 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:30:55.584 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:30:55.584 -07 000000424 INF: MeasureProfile done
17-03-18 06:30:55.584 -07 000000424 INF: X=-32  Z correction [um]=-0.2344
17-03-18 06:30:55.584 -07 000000424 INF: Autofocus finished
17-03-18 06:30:55.784 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:30:55.784 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:30:55.784 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176535208251544. ----------
17-03-18 06:30:55.784 -07 000000610 INF: Cycle	150	Tile	6	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:30:55.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37024, sync = True, waitForSettling = True)
17-03-18 06:30:55.794 -07 000000610 INF: Z Motor: Moving to -0.169485 mm, started at -0.176535 mm, distance = 7.05 um
17-03-18 06:30:55.794 -07 000000610 INF: FPGA: Xmit ZDACW 37024\n [Z Motor]
17-03-18 06:30:55.794 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:30:55.804 -07 000000610 INF: FPGA: 'ZDACW 37024' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:55.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:55.804 -07 000000382 INF: FPGA: Recv ZDACR 37024
17-03-18 06:30:55.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:55.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:30:55.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:55.964 -07 000000382 INF: FPGA: Recv ZSGSRD 35675
17-03-18 06:30:55.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:55.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:55.974 -07 000000487 INF: FPGA: Recv ZSGSRD 35671
17-03-18 06:30:55.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:55.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:55.984 -07 000000438 INF: FPGA: Recv ZSGSRD 35669
17-03-18 06:30:55.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:55.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:55.994 -07 000000424 INF: FPGA: Recv ZSGSRD 35670
17-03-18 06:30:56.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:56.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:56.004 -07 000000447 INF: FPGA: Recv ZSGSRD 35671
17-03-18 06:30:56.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:56.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:56.014 -07 000000502 INF: FPGA: Recv ZSGSRD 35670
17-03-18 06:30:56.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:56.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:56.024 -07 000000447 INF: FPGA: Recv ZSGSRD 35675
17-03-18 06:30:56.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:56.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:56.034 -07 000000502 INF: FPGA: Recv ZSGSRD 35670
17-03-18 06:30:56.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:56.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:56.044 -07 000000502 INF: FPGA: Recv ZSGSRD 35673
17-03-18 06:30:56.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:56.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:56.054 -07 000000606 INF: FPGA: Recv ZSGSRD 35671
17-03-18 06:30:56.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:56.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:30:56.064 -07 000000447 INF: FPGA: Recv ZPIEZORD 31446
17-03-18 06:30:56.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:56.074 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -9.3 V.
17-03-18 06:30:56.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35672 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35671 (-168.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35669 (-168.6 uncal um), Max = 35675 (-168.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:30:56.074 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35672, posNoise = 3, negNoise = 3
17-03-18 06:30:56.074 -07 000000610 INF: Z Motor: After move to -0.169485, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:30:56.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:30:56.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:56.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:56.074 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:30:56.074 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:30:56.074 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:30:56.074 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:56.074 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:30:56.074 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:56.074 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:30:56.074 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:30:56.074 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:30:56.074 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:30:56.074 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:30:56.074 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:30:56.074 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:30:56.084 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:30:56.084 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:30:56.084 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:30:56.094 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:30:56.094 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:30:56.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37201 150\n [Camera]
17-03-18 06:30:56.294 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:30:56.754 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:30:56.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:30:56.754 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:30:56.754 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:30:56.754 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:30:56.754 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:30:56.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:30:56.754 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:30:56.754 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:30:56.754 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:30:56.864 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:30:56.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:30:56.944 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37201 846
17-03-18 06:30:57.094 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:30:57.134 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:30:57.134 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:30:57.134 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:57.134 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:30:57.134 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:30:57.134 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:57.144 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:30:57.144 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:30:57.144 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:30:57.144 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:30:57.324 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:30:57.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:30:57.324 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:30:57.324 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:30:57.324 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:30:57.324 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:30:57.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:30:57.324 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:30:57.324 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:30:57.324 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:30:57.514 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:30:57.514 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:30:57.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37201 150' command took 2 ms to send, 1412 ms to get response, and 1418 ms overall
17-03-18 06:30:57.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:30:57.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.169487847532032. ------
17-03-18 06:30:57.524 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:57.524 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17590 mm
17-03-18 06:30:57.524 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:30:57.524 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:57.524 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:30:57.524 -07 000000592 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 06:30:57.524 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38426, sync = True, waitForSettling = False)
17-03-18 06:30:57.524 -07 000000590 INF: Z Motor: Moving to -0.175903 mm, started at -0.169488 mm, distance = -6.42 um
17-03-18 06:30:57.534 -07 000000590 INF: FPGA: Xmit ZDACW 38426\n [Z Motor]
17-03-18 06:30:57.534 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:30:57.534 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:30:57.544 -07 000000590 INF: FPGA: 'ZDACW 38426' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:30:57.544 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:57.544 -07 000000382 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:30:57.554 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:30:57.554 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:30:57.554 -07 000000592 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:57.554 -07 000000592 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:30:57.554 -07 000000592 INF: Y Motor: Moving 1339 steps-14
17-03-18 06:30:57.564 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:57.564 -07 000000447 INF: FPGA: Recv ZDACR 38426
17-03-18 06:30:57.574 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:30:57.574 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:30:57.574 -07 000000590 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 06:30:57.714 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:30:57.714 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:30:57.714 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:57.714 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 06:30:57.714 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:30:57.714 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:57.714 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:30:57.724 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:30:57.724 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:30:57.724 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:30:57.754 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:30:57.754 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:30:57.944 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 06:30:57.944 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:30:58.004 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:58.004 -07 000000438 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:30:58.014 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:30:58.014 -07 000000592 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:58.014 -07 000000592 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:30:58.014 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-18 06:30:58.414 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.000345,
17-03-18 06:30:58.964 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:30:58.964 -07 000000590 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:30:58.974 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:58.974 -07 000000592 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:30:59.004 -07 000000592 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:30:59.004 -07 000000592 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:30:59.004 -07 000000592 INF: Y Motor: Moved to 64.8774 after 1479 ms (table move)
17-03-18 06:30:59.004 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175903 mm (DAC = 38426)
17-03-18 06:30:59.004 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:59.014 -07 000000561 INF: FPGA: Recv ZSGSRD 36672
17-03-18 06:30:59.014 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:30:59.014 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:59.014 -07 000000561 INF: FPGA: Recv ZSGSRD 36674
17-03-18 06:30:59.024 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:30:59.024 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:59.024 -07 000000438 INF: FPGA: Recv ZSGSRD 36679
17-03-18 06:30:59.034 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:59.034 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:59.034 -07 000000382 INF: FPGA: Recv ZSGSRD 36667
17-03-18 06:30:59.044 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:59.044 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:59.044 -07 000000438 INF: FPGA: Recv ZSGSRD 36669
17-03-18 06:30:59.054 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:59.054 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:59.054 -07 000000382 INF: FPGA: Recv ZSGSRD 36672
17-03-18 06:30:59.064 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:59.064 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:59.064 -07 000000382 INF: FPGA: Recv ZSGSRD 36671
17-03-18 06:30:59.074 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:59.074 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:59.074 -07 000000592 INF: FPGA: Recv ZSGSRD 36671
17-03-18 06:30:59.084 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:59.084 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:59.084 -07 000000382 INF: FPGA: Recv ZSGSRD 36667
17-03-18 06:30:59.094 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:59.094 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:30:59.094 -07 000000382 INF: FPGA: Recv ZSGSRD 36676
17-03-18 06:30:59.104 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:59.104 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:30:59.104 -07 000000561 INF: FPGA: Recv ZPIEZORD 32814
17-03-18 06:30:59.114 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:30:59.114 -07 000000487 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.863 V. Piezo Error = -8.5 V.
17-03-18 06:30:59.114 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36672 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36672 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36667 (-175.0 uncal um), Max = 36679 (-175.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:30:59.114 -07 000000487 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36672, posNoise = 7, negNoise = 5
17-03-18 06:30:59.114 -07 000000487 INF: Z Motor: After move to -0.175903, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:30:59.114 -07 000000487 INF: Z Motor: Settle wait time = 1484 ms, measure time = 102 ms (allowed 150 ms), total time = 1586 ms
17-03-18 06:30:59.114 -07 000000487 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:30:59.164 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 06:30:59.164 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:30:59.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:30:59.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:30:59.164 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:30:59.164 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:30:59.164 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:30:59.164 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:30:59.164 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:30:59.164 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:30:59.174 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:30:59.174 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:30:59.184 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:30:59.184 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:30:59.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:30:59.234 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:30:59.534 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:30:59.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:30:59.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:30:59.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 06:30:59.574 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:30:59.574 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 06:30:59.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 06:30:59.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 06:30:59.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:30:59.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:30:59.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:30:59.674 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:30:59.674 -07 000000606 INF: Autofocus start
17-03-18 06:30:59.674 -07 000000606 INF: MeasureProfile start
17-03-18 06:30:59.674 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:30:59.684 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:30:59.684 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:30:59.684 -07 000000606 INF: MeasureProfile done
17-03-18 06:30:59.684 -07 000000606 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:30:59.684 -07 000000606 INF: Autofocus finished
17-03-18 06:30:59.884 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:30:59.884 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:30:59.894 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.175912059673793. ----------
17-03-18 06:30:59.894 -07 000000610 INF: Cycle	150	Tile	7	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:30:59.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36923, sync = True, waitForSettling = True)
17-03-18 06:30:59.894 -07 000000610 INF: Z Motor: Moving to -0.169023 mm, started at -0.175912 mm, distance = 6.89 um
17-03-18 06:30:59.894 -07 000000610 INF: FPGA: Xmit ZDACW 36923\n [Z Motor]
17-03-18 06:30:59.904 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:30:59.904 -07 000000610 INF: FPGA: 'ZDACW 36923' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:30:59.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:30:59.904 -07 000000424 INF: FPGA: Recv ZDACR 36923
17-03-18 06:30:59.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:30:59.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:00.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:00.064 -07 000000424 INF: FPGA: Recv ZSGSRD 35602
17-03-18 06:31:00.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:00.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:00.074 -07 000000424 INF: FPGA: Recv ZSGSRD 35602
17-03-18 06:31:00.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:00.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:00.084 -07 000000424 INF: FPGA: Recv ZSGSRD 35604
17-03-18 06:31:00.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:00.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:00.094 -07 000000424 INF: FPGA: Recv ZSGSRD 35598
17-03-18 06:31:00.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:00.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:00.104 -07 000000561 INF: FPGA: Recv ZSGSRD 35597
17-03-18 06:31:00.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:00.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:00.114 -07 000000561 INF: FPGA: Recv ZSGSRD 35603
17-03-18 06:31:00.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:00.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:00.124 -07 000000561 INF: FPGA: Recv ZSGSRD 35601
17-03-18 06:31:00.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:00.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:00.134 -07 000000592 INF: FPGA: Recv ZSGSRD 35598
17-03-18 06:31:00.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:00.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:00.144 -07 000000487 INF: FPGA: Recv ZSGSRD 35601
17-03-18 06:31:00.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:00.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:00.154 -07 000000447 INF: FPGA: Recv ZSGSRD 35598
17-03-18 06:31:00.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:00.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:00.164 -07 000000487 INF: FPGA: Recv ZPIEZORD 31372
17-03-18 06:31:00.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:00.174 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -9.3 V.
17-03-18 06:31:00.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35600 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35601 (-168.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35597 (-168.1 uncal um), Max = 35604 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:31:00.174 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35600, posNoise = 4, negNoise = 3
17-03-18 06:31:00.174 -07 000000610 INF: Z Motor: After move to -0.169023, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:00.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 06:31:00.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:00.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:00.174 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:00.174 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:00.174 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:00.174 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:00.174 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:00.174 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:00.174 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:00.174 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:00.174 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:31:00.174 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:00.184 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:31:00.184 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:00.184 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:31:00.184 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:00.194 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:31:00.194 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:31:00.194 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:31:00.194 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:31:00.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37100 150\n [Camera]
17-03-18 06:31:00.394 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:31:00.854 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:31:00.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:31:00.854 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:00.854 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:00.854 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:31:00.854 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:31:00.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:31:00.854 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:00.854 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:00.864 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:31:01.044 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37100 846
17-03-18 06:31:01.194 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:01.234 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:31:01.234 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:31:01.234 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:01.234 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:31:01.234 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:31:01.234 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:01.244 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:01.244 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:31:01.244 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:01.244 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:31:01.424 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:31:01.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:31:01.424 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:01.424 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:01.424 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:31:01.424 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:31:01.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:31:01.424 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:01.424 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:01.424 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:31:01.614 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:31:01.614 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:01.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37100 150' command took 2 ms to send, 1413 ms to get response, and 1417 ms overall
17-03-18 06:31:01.614 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:31:01.614 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.169025304257825. ------
17-03-18 06:31:01.614 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:01.614 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17585 mm
17-03-18 06:31:01.614 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:01.624 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:01.624 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:31:01.624 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38414, sync = True, waitForSettling = False)
17-03-18 06:31:01.624 -07 000000487 INF: Z Motor: Moving to -0.175848 mm, started at -0.169025 mm, distance = -6.82 um
17-03-18 06:31:01.624 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:01.624 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:31:01.624 -07 000000424 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 06:31:01.634 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:01.634 -07 000000502 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:31:01.644 -07 000000487 INF: FPGA: Xmit ZDACW 38414\n [Z Motor]
17-03-18 06:31:01.644 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:31:01.644 -07 000000424 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:01.644 -07 000000424 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:31:01.644 -07 000000424 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:31:01.644 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:31:01.654 -07 000000487 INF: FPGA: 'ZDACW 38414' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:31:01.654 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:01.654 -07 000000502 INF: FPGA: Recv ZDACR 38414
17-03-18 06:31:01.664 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:01.664 -07 000000487 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 06:31:01.664 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:31:01.824 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:31:01.824 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:31:01.824 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:01.824 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:01.824 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:31:01.824 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:31:01.824 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:01.824 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 06:31:01.834 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:01.834 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:31:01.834 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:31:01.834 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:31:01.864 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:31:01.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:31:02.044 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 06:31:02.044 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 401 ms overall
17-03-18 06:31:02.094 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:02.094 -07 000000561 INF: FPGA: Recv YRDPOS 134579
17-03-18 06:31:02.104 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:31:02.104 -07 000000424 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:02.104 -07 000000424 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:31:02.104 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.845 mm, average velocity = 2.108 mm/sec
17-03-18 06:31:03.054 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:03.054 -07 000000590 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:31:03.064 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:03.064 -07 000000424 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:03.104 -07 000000424 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:31:03.104 -07 000000424 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:31:03.104 -07 000000424 INF: Y Motor: Moved to 65.7129 after 1477 ms (table move)
17-03-18 06:31:03.104 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175848 mm (DAC = 38414)
17-03-18 06:31:03.104 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:03.104 -07 000000438 INF: FPGA: Recv ZSGSRD 36674
17-03-18 06:31:03.114 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:31:03.114 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:03.114 -07 000000447 INF: FPGA: Recv ZSGSRD 36654
17-03-18 06:31:03.124 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:03.124 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:03.124 -07 000000487 INF: FPGA: Recv ZSGSRD 36657
17-03-18 06:31:03.134 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:03.134 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:03.134 -07 000000590 INF: FPGA: Recv ZSGSRD 36663
17-03-18 06:31:03.144 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:03.144 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:03.144 -07 000000502 INF: FPGA: Recv ZSGSRD 36663
17-03-18 06:31:03.154 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:03.154 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:03.154 -07 000000447 INF: FPGA: Recv ZSGSRD 36673
17-03-18 06:31:03.164 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:03.164 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:03.164 -07 000000424 INF: FPGA: Recv ZSGSRD 36666
17-03-18 06:31:03.174 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:03.174 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:03.174 -07 000000592 INF: FPGA: Recv ZSGSRD 36667
17-03-18 06:31:03.184 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:03.184 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:03.184 -07 000000487 INF: FPGA: Recv ZSGSRD 36662
17-03-18 06:31:03.194 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:03.194 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:03.194 -07 000000590 INF: FPGA: Recv ZSGSRD 36662
17-03-18 06:31:03.204 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:03.204 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:03.204 -07 000000424 INF: FPGA: Recv ZPIEZORD 32792
17-03-18 06:31:03.214 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:03.214 -07 000000382 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.862 V. Piezo Error = -8.6 V.
17-03-18 06:31:03.214 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36664 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36663 (-175.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36654 (-174.9 uncal um), Max = 36674 (-175.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:31:03.214 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36664, posNoise = 10, negNoise = 10
17-03-18 06:31:03.214 -07 000000382 INF: Z Motor: After move to -0.175848, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:03.214 -07 000000382 INF: Z Motor: Settle wait time = 1482 ms, measure time = 105 ms (allowed 150 ms), total time = 1587 ms
17-03-18 06:31:03.214 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:31:03.264 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1642 ms
17-03-18 06:31:03.264 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:31:03.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:03.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:03.264 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:03.264 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:03.264 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:31:03.264 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:03.264 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:03.264 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:31:03.274 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:31:03.274 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:31:03.284 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:31:03.284 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:31:03.284 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:31:03.334 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:31:03.634 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:31:03.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:31:03.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:31:03.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2807500560, 0x0, 559484976) start.
17-03-18 06:31:03.664 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:31:03.674 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 06:31:03.674 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:31:03.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2807500560, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:31:03.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:03.754 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:31:03.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:31:03.774 -07 000000438 INF: Autofocus start
17-03-18 06:31:03.774 -07 000000438 INF: MeasureProfile start
17-03-18 06:31:03.794 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:03.794 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.960826,
17-03-18 06:31:03.794 -07 000000438 INF: MeasureProfile done
17-03-18 06:31:03.794 -07 000000438 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:31:03.794 -07 000000438 INF: Autofocus finished
17-03-18 06:31:03.794 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:03.804 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:31:03.804 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:31:04.004 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:31:04.004 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:31:04.004 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.175860665976659. ----------
17-03-18 06:31:04.014 -07 000000610 INF: Cycle	150	Tile	8	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:31:04.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36911, sync = True, waitForSettling = True)
17-03-18 06:31:04.014 -07 000000610 INF: Z Motor: Moving to -0.168968 mm, started at -0.175861 mm, distance = 6.89 um
17-03-18 06:31:04.014 -07 000000610 INF: FPGA: Xmit ZDACW 36911\n [Z Motor]
17-03-18 06:31:04.014 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:31:04.024 -07 000000610 INF: FPGA: 'ZDACW 36911' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:31:04.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:04.024 -07 000000487 INF: FPGA: Recv ZDACR 36911
17-03-18 06:31:04.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:04.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:04.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:04.184 -07 000000487 INF: FPGA: Recv ZSGSRD 35593
17-03-18 06:31:04.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:04.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:04.194 -07 000000382 INF: FPGA: Recv ZSGSRD 35598
17-03-18 06:31:04.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:04.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:04.204 -07 000000487 INF: FPGA: Recv ZSGSRD 35586
17-03-18 06:31:04.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:04.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:04.214 -07 000000382 INF: FPGA: Recv ZSGSRD 35588
17-03-18 06:31:04.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:04.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:04.224 -07 000000424 INF: FPGA: Recv ZSGSRD 35589
17-03-18 06:31:04.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:04.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:04.234 -07 000000502 INF: FPGA: Recv ZSGSRD 35596
17-03-18 06:31:04.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:04.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:04.244 -07 000000424 INF: FPGA: Recv ZSGSRD 35594
17-03-18 06:31:04.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:04.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:04.254 -07 000000561 INF: FPGA: Recv ZSGSRD 35590
17-03-18 06:31:04.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:04.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:04.264 -07 000000424 INF: FPGA: Recv ZSGSRD 35593
17-03-18 06:31:04.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:04.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:04.274 -07 000000502 INF: FPGA: Recv ZSGSRD 35593
17-03-18 06:31:04.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:04.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:04.284 -07 000000382 INF: FPGA: Recv ZPIEZORD 31380
17-03-18 06:31:04.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:04.294 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.3 V.
17-03-18 06:31:04.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35592 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35593 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35586 (-168.1 uncal um), Max = 35598 (-168.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:31:04.294 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35592, posNoise = 6, negNoise = 6
17-03-18 06:31:04.294 -07 000000610 INF: Z Motor: After move to -0.168968, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:04.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:31:04.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:04.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:04.294 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:04.294 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:04.294 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:04.294 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:04.294 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:04.294 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:04.294 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:31:04.294 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:04.294 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:04.294 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:04.304 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:31:04.304 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:04.304 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:31:04.304 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:04.314 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:31:04.314 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:31:04.314 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:31:04.314 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:31:04.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37088 150\n [Camera]
17-03-18 06:31:04.514 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:31:04.974 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:31:04.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:31:04.984 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:31:04.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:31:04.984 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:04.984 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:04.984 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:31:04.984 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:04.984 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:04.984 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:31:05.174 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37088 846
17-03-18 06:31:05.324 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:05.384 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:31:05.384 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:31:05.384 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:05.384 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 06:31:05.394 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:31:05.394 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:05.394 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:05.394 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:31:05.394 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:05.404 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 06:31:05.544 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1220
17-03-18 06:31:05.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1220
17-03-18 06:31:05.544 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:05.544 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:05.544 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 06:31:05.544 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1220
17-03-18 06:31:05.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1220
17-03-18 06:31:05.544 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:05.554 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:05.554 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 06:31:05.734 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:31:05.734 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:05.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37088 150' command took 2 ms to send, 1415 ms to get response, and 1419 ms overall
17-03-18 06:31:05.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:31:05.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.168973910560691. ------
17-03-18 06:31:05.744 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17543 mm
17-03-18 06:31:05.744 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:05.744 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:05.744 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:31:05.744 -07 000000502 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 06:31:05.744 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38323, sync = True, waitForSettling = False)
17-03-18 06:31:05.744 -07 000000512 INF: Z Motor: Moving to -0.175431 mm, started at -0.168974 mm, distance = -6.46 um
17-03-18 06:31:05.744 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:05.754 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:31:05.754 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:05.754 -07 000000447 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:31:05.764 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:31:05.764 -07 000000502 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:05.764 -07 000000502 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:31:05.764 -07 000000502 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:31:05.764 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:05.774 -07 000000512 INF: FPGA: Xmit ZDACW 38323\n [Z Motor]
17-03-18 06:31:05.774 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:31:05.784 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:31:05.784 -07 000000512 INF: FPGA: 'ZDACW 38323' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 06:31:05.794 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:05.794 -07 000000561 INF: FPGA: Recv ZDACR 38323
17-03-18 06:31:05.804 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:31:05.804 -07 000000512 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 06:31:05.924 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:31:05.924 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:31:05.924 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:05.924 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:31:05.924 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:31:05.924 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:05.934 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:05.934 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:31:05.934 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:31:05.934 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:31:05.964 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:05.964 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 213 ms overall
17-03-18 06:31:06.154 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 06:31:06.154 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:31:06.214 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:06.214 -07 000000438 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:31:06.224 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:31:06.224 -07 000000502 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:06.224 -07 000000502 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:31:06.224 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 06:31:06.864 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:31:06.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:31:07.174 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:07.174 -07 000000512 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:31:07.184 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:07.184 -07 000000502 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:07.214 -07 000000502 INF: Y Motor: After move to 66.552605, error = -0.015007, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:31:07.214 -07 000000502 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:31:07.214 -07 000000502 INF: Y Motor: Moved to 66.5376 after 1468 ms (table move)
17-03-18 06:31:07.214 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175431 mm (DAC = 38323)
17-03-18 06:31:07.214 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:07.224 -07 000000592 INF: FPGA: Recv ZSGSRD 36604
17-03-18 06:31:07.224 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 06:31:07.224 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:07.224 -07 000000438 INF: FPGA: Recv ZSGSRD 36600
17-03-18 06:31:07.234 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:31:07.234 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:07.234 -07 000000502 INF: FPGA: Recv ZSGSRD 36598
17-03-18 06:31:07.244 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:31:07.244 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:07.244 -07 000000424 INF: FPGA: Recv ZSGSRD 36600
17-03-18 06:31:07.254 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:07.254 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:07.254 -07 000000447 INF: FPGA: Recv ZSGSRD 36599
17-03-18 06:31:07.264 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:07.264 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:07.264 -07 000000424 INF: FPGA: Recv ZSGSRD 36602
17-03-18 06:31:07.274 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:07.274 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:07.274 -07 000000382 INF: FPGA: Recv ZSGSRD 36599
17-03-18 06:31:07.284 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:07.284 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:07.284 -07 000000487 INF: FPGA: Recv ZSGSRD 36599
17-03-18 06:31:07.294 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:07.294 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:07.294 -07 000000487 INF: FPGA: Recv ZSGSRD 36602
17-03-18 06:31:07.304 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:07.304 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:07.304 -07 000000487 INF: FPGA: Recv ZSGSRD 36604
17-03-18 06:31:07.314 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:07.314 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:07.314 -07 000000502 INF: FPGA: Recv ZPIEZORD 32734
17-03-18 06:31:07.324 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:07.324 -07 000000590 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.848 V. Piezo Error = -8.5 V.
17-03-18 06:31:07.324 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36601 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36600 (-174.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36598 (-174.5 uncal um), Max = 36604 (-174.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:31:07.324 -07 000000590 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36601, posNoise = 3, negNoise = 3
17-03-18 06:31:07.324 -07 000000590 INF: Z Motor: After move to -0.175431, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:07.324 -07 000000590 INF: Z Motor: Settle wait time = 1471 ms, measure time = 102 ms (allowed 150 ms), total time = 1573 ms
17-03-18 06:31:07.324 -07 000000590 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:31:07.374 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 06:31:07.374 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:31:07.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:07.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:07.374 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:07.374 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:07.374 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:31:07.374 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:07.374 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:31:07.374 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:31:07.384 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:31:07.384 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:31:07.394 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:31:07.394 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:31:07.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:31:07.434 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:31:07.734 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:31:07.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:31:07.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:31:07.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 06:31:07.774 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:31:07.774 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:31:07.774 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:31:07.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:31:07.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:07.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:31:07.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:31:07.874 -07 000000512 INF: Autofocus start
17-03-18 06:31:07.874 -07 000000512 INF: MeasureProfile start
17-03-18 06:31:07.874 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:07.874 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:07.884 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:31:07.884 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:31:07.884 -07 000000512 INF: MeasureProfile done
17-03-18 06:31:07.884 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:31:07.884 -07 000000512 INF: Autofocus finished
17-03-18 06:31:08.084 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:31:08.084 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:31:08.084 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53759765625, Z-position -0.175455940611728. ----------
17-03-18 06:31:08.084 -07 000000610 INF: Cycle	150	Tile	9	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:31:08.094 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36855, sync = True, waitForSettling = True)
17-03-18 06:31:08.094 -07 000000610 INF: Z Motor: Moving to -0.168711 mm, started at -0.175456 mm, distance = 6.74 um
17-03-18 06:31:08.094 -07 000000610 INF: FPGA: Xmit ZDACW 36855\n [Z Motor]
17-03-18 06:31:08.094 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:31:08.104 -07 000000610 INF: FPGA: 'ZDACW 36855' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:31:08.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:08.104 -07 000000438 INF: FPGA: Recv ZDACR 36855
17-03-18 06:31:08.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:08.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:08.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:08.264 -07 000000382 INF: FPGA: Recv ZSGSRD 35555
17-03-18 06:31:08.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:08.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:08.274 -07 000000447 INF: FPGA: Recv ZSGSRD 35554
17-03-18 06:31:08.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:08.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:08.284 -07 000000424 INF: FPGA: Recv ZSGSRD 35553
17-03-18 06:31:08.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:08.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:08.294 -07 000000447 INF: FPGA: Recv ZSGSRD 35552
17-03-18 06:31:08.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:08.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:08.304 -07 000000382 INF: FPGA: Recv ZSGSRD 35555
17-03-18 06:31:08.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:08.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:08.314 -07 000000447 INF: FPGA: Recv ZSGSRD 35554
17-03-18 06:31:08.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:31:08.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:08.324 -07 000000447 INF: FPGA: Recv ZSGSRD 35554
17-03-18 06:31:08.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:08.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:08.344 -07 000000512 INF: FPGA: Recv ZSGSRD 35556
17-03-18 06:31:08.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:31:08.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:08.344 -07 000000447 INF: FPGA: Recv ZSGSRD 35551
17-03-18 06:31:08.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:08.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:08.354 -07 000000512 INF: FPGA: Recv ZSGSRD 35556
17-03-18 06:31:08.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:08.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:08.364 -07 000000502 INF: FPGA: Recv ZPIEZORD 31330
17-03-18 06:31:08.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:08.374 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.624 V. Piezo Error = -9.3 V.
17-03-18 06:31:08.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35554 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35554 (-167.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35551 (-167.8 uncal um), Max = 35556 (-167.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:31:08.374 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35554, posNoise = 2, negNoise = 3
17-03-18 06:31:08.374 -07 000000610 INF: Z Motor: After move to -0.168711, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:08.374 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:31:08.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:08.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:08.374 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:08.374 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:08.374 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:08.374 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:08.374 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:08.374 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:08.374 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 06:31:08.374 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:08.374 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-18 06:31:08.374 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:08.384 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:31:08.384 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:08.384 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:31:08.384 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:08.394 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:31:08.394 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:31:08.394 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:31:08.394 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:31:08.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37032 150\n [Camera]
17-03-18 06:31:08.594 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:31:09.054 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:31:09.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:31:09.054 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:09.054 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:09.054 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:31:09.054 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:31:09.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:31:09.054 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:09.054 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:09.054 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:31:09.174 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.974486,
17-03-18 06:31:09.244 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37032 846
17-03-18 06:31:09.394 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:09.434 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:31:09.434 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:31:09.434 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:09.434 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:31:09.434 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:09.434 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:31:09.434 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:09.444 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:09.444 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:31:09.444 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:31:09.624 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:31:09.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:31:09.624 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:09.754 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:31:09.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:31:09.754 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:09.754 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:09.754 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:31:09.764 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:09.764 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:31:09.814 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:31:09.814 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:09.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37032 150' command took 2 ms to send, 1411 ms to get response, and 1417 ms overall
17-03-18 06:31:09.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:31:09.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53759765625, Z-Position -0.168729790499304. ------
17-03-18 06:31:09.814 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:09.814 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17543 mm
17-03-18 06:31:09.814 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:09.814 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:31:09.814 -07 000000590 INF: Y Motor: Moving to 67.3826 mm, started at 66.5376 mm, delta = 0.8450 mm
17-03-18 06:31:09.814 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:09.824 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:31:09.824 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:09.824 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38324, sync = True, waitForSettling = False)
17-03-18 06:31:09.824 -07 000000382 INF: Z Motor: Moving to -0.175436 mm, started at -0.168730 mm, distance = -6.71 um
17-03-18 06:31:09.824 -07 000000561 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:31:09.834 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:09.834 -07 000000590 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:09.834 -07 000000382 INF: FPGA: Xmit ZDACW 38324\n [Z Motor]
17-03-18 06:31:09.834 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:31:09.834 -07 000000590 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:31:09.834 -07 000000590 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:31:09.844 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:09.844 -07 000000382 INF: FPGA: 'ZDACW 38324' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:31:09.854 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:31:09.864 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:09.864 -07 000000479 INF: FPGA: Recv ZDACR 38324
17-03-18 06:31:09.874 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:31:09.874 -07 000000382 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 06:31:10.044 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:10.044 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-18 06:31:10.154 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:31:10.154 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:31:10.154 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:10.154 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:31:10.154 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:31:10.154 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:10.164 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:10.164 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:10.164 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 542 ms.
17-03-18 06:31:10.164 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:31:10.224 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:31:10.224 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 06:31:10.274 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:10.284 -07 000000382 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:31:10.294 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:10.294 -07 000000590 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:10.294 -07 000000590 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 06:31:10.294 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.161 mm/sec
17-03-18 06:31:11.244 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:11.244 -07 000000479 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:31:11.254 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:11.254 -07 000000590 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:11.284 -07 000000590 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:31:11.284 -07 000000590 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:31:11.284 -07 000000590 INF: Y Motor: Moved to 67.3706 after 1464 ms (table move)
17-03-18 06:31:11.284 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175436 mm (DAC = 38324)
17-03-18 06:31:11.284 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:11.294 -07 000000590 INF: FPGA: Recv ZSGSRD 36600
17-03-18 06:31:11.294 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:31:11.294 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:11.294 -07 000000590 INF: FPGA: Recv ZSGSRD 36604
17-03-18 06:31:11.304 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:11.304 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:11.304 -07 000000438 INF: FPGA: Recv ZSGSRD 36598
17-03-18 06:31:11.314 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:11.314 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:11.314 -07 000000479 INF: FPGA: Recv ZSGSRD 36593
17-03-18 06:31:11.324 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:11.324 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:11.324 -07 000000479 INF: FPGA: Recv ZSGSRD 36595
17-03-18 06:31:11.334 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:11.334 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:11.334 -07 000000606 INF: FPGA: Recv ZSGSRD 36601
17-03-18 06:31:11.344 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:11.344 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:11.344 -07 000000606 INF: FPGA: Recv ZSGSRD 36595
17-03-18 06:31:11.354 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:11.354 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:11.354 -07 000000606 INF: FPGA: Recv ZSGSRD 36599
17-03-18 06:31:11.364 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:11.364 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:11.364 -07 000000424 INF: FPGA: Recv ZSGSRD 36602
17-03-18 06:31:11.374 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:11.374 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:11.374 -07 000000606 INF: FPGA: Recv ZSGSRD 36601
17-03-18 06:31:11.384 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:11.384 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:11.384 -07 000000606 INF: FPGA: Recv ZPIEZORD 32731
17-03-18 06:31:11.394 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:11.394 -07 000000447 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.848 V. Piezo Error = -8.6 V.
17-03-18 06:31:11.394 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36599 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36600 (-174.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36593 (-174.5 uncal um), Max = 36604 (-174.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:31:11.394 -07 000000447 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36599, posNoise = 5, negNoise = 6
17-03-18 06:31:11.394 -07 000000447 INF: Z Motor: After move to -0.175436, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:11.394 -07 000000447 INF: Z Motor: Settle wait time = 1466 ms, measure time = 103 ms (allowed 150 ms), total time = 1569 ms
17-03-18 06:31:11.394 -07 000000447 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:31:11.444 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 06:31:11.444 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:31:11.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:11.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:11.444 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:11.444 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:31:11.444 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:11.444 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:11.444 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:11.444 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:31:11.454 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:31:11.454 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:31:11.454 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:31:11.454 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:31:11.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:31:11.504 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:31:11.804 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:31:11.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:31:11.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:31:11.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-18 06:31:11.844 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:31:11.844 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 06:31:11.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:31:11.864 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:31:11.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:31:11.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:11.924 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:31:11.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:31:11.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:31:11.944 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:11.944 -07 000000438 INF: Autofocus start
17-03-18 06:31:11.944 -07 000000438 INF: MeasureProfile start
17-03-18 06:31:11.944 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:11.954 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:31:11.954 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:31:11.954 -07 000000438 INF: MeasureProfile done
17-03-18 06:31:11.954 -07 000000438 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:31:11.954 -07 000000438 INF: Autofocus finished
17-03-18 06:31:12.154 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:31:12.154 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:31:12.154 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.175443092187444. ----------
17-03-18 06:31:12.154 -07 000000610 INF: Cycle	150	Tile	10	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:31:12.164 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36821, sync = True, waitForSettling = True)
17-03-18 06:31:12.164 -07 000000610 INF: Z Motor: Moving to -0.168556 mm, started at -0.175443 mm, distance = 6.89 um
17-03-18 06:31:12.164 -07 000000610 INF: FPGA: Xmit ZDACW 36821\n [Z Motor]
17-03-18 06:31:12.164 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:31:12.174 -07 000000610 INF: FPGA: 'ZDACW 36821' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:31:12.174 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:12.174 -07 000000561 INF: FPGA: Recv ZDACR 36821
17-03-18 06:31:12.184 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:12.184 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:12.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:12.334 -07 000000487 INF: FPGA: Recv ZSGSRD 35530
17-03-18 06:31:12.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:12.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:12.344 -07 000000438 INF: FPGA: Recv ZSGSRD 35527
17-03-18 06:31:12.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:12.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:12.354 -07 000000561 INF: FPGA: Recv ZSGSRD 35532
17-03-18 06:31:12.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:12.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:12.364 -07 000000487 INF: FPGA: Recv ZSGSRD 35524
17-03-18 06:31:12.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:12.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:12.374 -07 000000438 INF: FPGA: Recv ZSGSRD 35528
17-03-18 06:31:12.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:12.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:12.384 -07 000000447 INF: FPGA: Recv ZSGSRD 35528
17-03-18 06:31:12.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:12.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:12.394 -07 000000561 INF: FPGA: Recv ZSGSRD 35535
17-03-18 06:31:12.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:12.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:12.404 -07 000000487 INF: FPGA: Recv ZSGSRD 35525
17-03-18 06:31:12.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:12.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:12.414 -07 000000447 INF: FPGA: Recv ZSGSRD 35526
17-03-18 06:31:12.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:12.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:12.424 -07 000000424 INF: FPGA: Recv ZSGSRD 35534
17-03-18 06:31:12.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:12.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:12.434 -07 000000561 INF: FPGA: Recv ZPIEZORD 31302
17-03-18 06:31:12.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:12.444 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.619 V. Piezo Error = -9.3 V.
17-03-18 06:31:12.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35529 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35528 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35524 (-167.7 uncal um), Max = 35535 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:31:12.444 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35529, posNoise = 6, negNoise = 5
17-03-18 06:31:12.444 -07 000000610 INF: Z Motor: After move to -0.168556, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:12.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-18 06:31:12.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:12.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:12.454 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:12.454 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:12.454 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:12.454 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:12.454 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:12.454 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:12.454 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:12.454 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:12.454 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:31:12.454 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:12.464 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 06:31:12.464 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:12.464 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:31:12.464 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:12.474 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:31:12.474 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:31:12.474 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:31:12.474 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:31:12.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36997 150\n [Camera]
17-03-18 06:31:12.674 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:31:13.134 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:31:13.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:31:13.134 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:13.144 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:31:13.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:31:13.144 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:13.144 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:13.144 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2604644624, 0x0, 391868352) start.
17-03-18 06:31:13.144 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:13.144 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:31:13.334 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36997 846
17-03-18 06:31:13.474 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:13.524 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:31:13.524 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:31:13.524 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:13.524 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:13.524 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2604644624, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:31:13.524 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:31:13.524 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:13.524 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:13.534 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:31:13.534 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:31:13.704 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:31:13.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:31:13.704 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:13.704 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:31:13.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:31:13.704 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:13.834 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:13.834 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 06:31:13.834 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:13.834 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:31:13.894 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:31:13.894 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:13.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36997 150' command took 2 ms to send, 1414 ms to get response, and 1418 ms overall
17-03-18 06:31:13.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:31:13.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37060546875, Z-Position -0.16856918519576. ------
17-03-18 06:31:13.894 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:13.894 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17483 mm
17-03-18 06:31:13.894 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:13.904 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:13.904 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:31:13.904 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:31:13.904 -07 000000512 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 06:31:13.904 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:13.904 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38192, sync = True, waitForSettling = False)
17-03-18 06:31:13.904 -07 000000447 INF: Z Motor: Moving to -0.174832 mm, started at -0.168569 mm, distance = -6.26 um
17-03-18 06:31:13.914 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:13.914 -07 000000502 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:31:13.924 -07 000000447 INF: FPGA: Xmit ZDACW 38192\n [Z Motor]
17-03-18 06:31:13.924 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:31:13.924 -07 000000512 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:13.924 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:31:13.924 -07 000000512 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:31:13.924 -07 000000512 INF: Y Motor: Moving 1346 steps-25
17-03-18 06:31:13.934 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:31:13.934 -07 000000447 INF: FPGA: 'ZDACW 38192' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:31:13.944 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:13.944 -07 000000502 INF: FPGA: Recv ZDACR 38192
17-03-18 06:31:13.954 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:31:13.954 -07 000000447 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 06:31:14.104 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:14.104 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 06:31:14.234 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:31:14.234 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:31:14.234 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:14.234 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:31:14.234 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:31:14.234 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:14.234 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:14.234 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 535 ms.
17-03-18 06:31:14.234 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:14.244 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 539 ms.
17-03-18 06:31:14.304 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:31:14.304 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 06:31:14.364 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:14.364 -07 000000487 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:31:14.374 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:31:14.374 -07 000000512 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:14.374 -07 000000512 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:31:14.374 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.842 mm, average velocity = 2.216 mm/sec
17-03-18 06:31:14.544 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.001704,
17-03-18 06:31:15.324 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:15.324 -07 000000502 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:31:15.334 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:15.334 -07 000000512 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:15.364 -07 000000512 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:31:15.364 -07 000000512 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:31:15.364 -07 000000512 INF: Y Motor: Moved to 68.2041 after 1459 ms (table move)
17-03-18 06:31:15.364 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174832 mm (DAC = 38192)
17-03-18 06:31:15.364 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:15.364 -07 000000512 INF: FPGA: Recv ZSGSRD 36506
17-03-18 06:31:15.374 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:31:15.374 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:15.374 -07 000000512 INF: FPGA: Recv ZSGSRD 36504
17-03-18 06:31:15.384 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:15.384 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:15.384 -07 000000512 INF: FPGA: Recv ZSGSRD 36502
17-03-18 06:31:15.394 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:15.394 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:15.394 -07 000000512 INF: FPGA: Recv ZSGSRD 36500
17-03-18 06:31:15.404 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:15.404 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:15.404 -07 000000512 INF: FPGA: Recv ZSGSRD 36509
17-03-18 06:31:15.414 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:15.414 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:15.414 -07 000000512 INF: FPGA: Recv ZSGSRD 36501
17-03-18 06:31:15.424 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:15.424 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:15.424 -07 000000512 INF: FPGA: Recv ZSGSRD 36500
17-03-18 06:31:15.434 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:15.434 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:15.434 -07 000000487 INF: FPGA: Recv ZSGSRD 36510
17-03-18 06:31:15.444 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:15.444 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:15.444 -07 000000487 INF: FPGA: Recv ZSGSRD 36504
17-03-18 06:31:15.454 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:15.454 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:15.454 -07 000000487 INF: FPGA: Recv ZSGSRD 36509
17-03-18 06:31:15.464 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:15.464 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:15.464 -07 000000487 INF: FPGA: Recv ZPIEZORD 32598
17-03-18 06:31:15.474 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:15.474 -07 000000590 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.6 V.
17-03-18 06:31:15.474 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36504 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36504 (-173.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36500 (-173.9 uncal um), Max = 36510 (-174.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:31:15.474 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36504, posNoise = 6, negNoise = 4
17-03-18 06:31:15.474 -07 000000590 INF: Z Motor: After move to -0.174832, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:15.474 -07 000000590 INF: Z Motor: Settle wait time = 1462 ms, measure time = 104 ms (allowed 150 ms), total time = 1566 ms
17-03-18 06:31:15.474 -07 000000590 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:31:15.524 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 06:31:15.524 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:31:15.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:15.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:15.524 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:15.524 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:15.524 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:31:15.524 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:15.524 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:15.524 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:31:15.534 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:31:15.534 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:31:15.544 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:31:15.544 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:31:15.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:31:15.594 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:31:15.894 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:31:15.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:31:15.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:31:15.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 06:31:15.924 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:31:15.934 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 06:31:15.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:31:16.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:31:16.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:16.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:31:16.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:31:16.034 -07 000000502 INF: Autofocus start
17-03-18 06:31:16.034 -07 000000502 INF: MeasureProfile start
17-03-18 06:31:16.034 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:16.034 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:16.044 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:31:16.044 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:31:16.044 -07 000000502 INF: MeasureProfile done
17-03-18 06:31:16.044 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:31:16.044 -07 000000502 INF: Autofocus finished
17-03-18 06:31:16.244 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:31:16.244 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 06:31:16.254 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.174832792033977. ----------
17-03-18 06:31:16.254 -07 000000610 INF: Cycle	150	Tile	11	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:31:16.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36689, sync = True, waitForSettling = True)
17-03-18 06:31:16.254 -07 000000610 INF: Z Motor: Moving to -0.167951 mm, started at -0.174833 mm, distance = 6.88 um
17-03-18 06:31:16.254 -07 000000610 INF: FPGA: Xmit ZDACW 36689\n [Z Motor]
17-03-18 06:31:16.254 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:31:16.264 -07 000000610 INF: FPGA: 'ZDACW 36689' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:31:16.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:16.264 -07 000000606 INF: FPGA: Recv ZDACR 36689
17-03-18 06:31:16.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:16.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:16.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:16.424 -07 000000438 INF: FPGA: Recv ZSGSRD 35434
17-03-18 06:31:16.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:16.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:16.434 -07 000000512 INF: FPGA: Recv ZSGSRD 35429
17-03-18 06:31:16.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:16.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:16.444 -07 000000561 INF: FPGA: Recv ZSGSRD 35439
17-03-18 06:31:16.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:16.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:16.454 -07 000000438 INF: FPGA: Recv ZSGSRD 35430
17-03-18 06:31:16.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:16.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:16.464 -07 000000438 INF: FPGA: Recv ZSGSRD 35438
17-03-18 06:31:16.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:16.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:16.474 -07 000000382 INF: FPGA: Recv ZSGSRD 35438
17-03-18 06:31:16.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:16.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:16.484 -07 000000438 INF: FPGA: Recv ZSGSRD 35428
17-03-18 06:31:16.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:16.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:16.494 -07 000000512 INF: FPGA: Recv ZSGSRD 35434
17-03-18 06:31:16.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:16.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:16.504 -07 000000438 INF: FPGA: Recv ZSGSRD 35431
17-03-18 06:31:16.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:16.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:16.514 -07 000000424 INF: FPGA: Recv ZSGSRD 35438
17-03-18 06:31:16.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:16.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:16.524 -07 000000424 INF: FPGA: Recv ZPIEZORD 31184
17-03-18 06:31:16.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:16.534 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -9.4 V.
17-03-18 06:31:16.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35434 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35434 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35428 (-167.1 uncal um), Max = 35439 (-167.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:31:16.534 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35434, posNoise = 5, negNoise = 6
17-03-18 06:31:16.534 -07 000000610 INF: Z Motor: After move to -0.167951, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:16.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:31:16.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:16.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:16.534 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:16.544 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:16.544 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:16.544 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:16.544 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:16.544 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:31:16.544 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:16.544 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:16.544 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:31:16.544 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:16.544 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:31:16.544 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:16.544 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:31:16.544 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:16.554 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:31:16.554 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:31:16.564 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:31:16.564 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:31:16.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36866 150\n [Camera]
17-03-18 06:31:16.764 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:31:16.864 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:31:16.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:31:17.224 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:31:17.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:31:17.224 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:17.234 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:31:17.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:31:17.234 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:17.234 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:17.234 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2600239320, 0x0, 391868352) start.
17-03-18 06:31:17.234 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:17.234 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:31:17.414 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36866 846
17-03-18 06:31:17.564 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:17.604 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2600239320, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 06:31:17.604 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 06:31:17.604 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:17.614 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:31:17.614 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:31:17.614 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:17.614 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:17.614 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:31:17.614 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:17.624 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:31:17.794 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:31:17.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:31:17.794 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:17.794 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:17.794 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:31:17.794 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:31:17.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:31:17.794 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:17.794 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:17.794 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) start.
17-03-18 06:31:17.984 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:31:18.094 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:18.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36866 150' command took 2 ms to send, 1524 ms to get response, and 1529 ms overall
17-03-18 06:31:18.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:31:18.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.167958885042293. ------
17-03-18 06:31:18.094 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:18.094 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17458 mm
17-03-18 06:31:18.094 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:18.104 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38138, sync = True, waitForSettling = False)
17-03-18 06:31:18.104 -07 000000438 INF: Z Motor: Moving to -0.174585 mm, started at -0.167959 mm, distance = -6.63 um
17-03-18 06:31:18.104 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:31:18.104 -07 000000512 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 06:31:18.104 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:18.104 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 06:31:18.104 -07 000000438 INF: FPGA: Xmit ZDACW 38138\n [Z Motor]
17-03-18 06:31:18.104 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:31:18.114 -07 000000438 INF: FPGA: 'ZDACW 38138' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:31:18.114 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:18.114 -07 000000592 INF: FPGA: Recv ZDACR 38138
17-03-18 06:31:18.124 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:18.124 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:18.124 -07 000000438 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-18 06:31:18.134 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:18.134 -07 000000438 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:31:18.144 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-18 06:31:18.144 -07 000000512 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:18.144 -07 000000512 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:31:18.144 -07 000000512 INF: Y Motor: Moving 1342 steps-17
17-03-18 06:31:18.144 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:31:18.184 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:31:18.184 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:31:18.184 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:18.184 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:31:18.184 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:31:18.184 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:18.194 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:18.194 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:18.194 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:31:18.204 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:31:18.324 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:18.324 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 06:31:18.524 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 06:31:18.524 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 381 ms overall
17-03-18 06:31:18.574 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:18.574 -07 000000487 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:31:18.584 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:31:18.584 -07 000000512 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:18.584 -07 000000512 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 06:31:18.584 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.839 mm, average velocity = 2.201 mm/sec
17-03-18 06:31:19.534 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:19.534 -07 000000487 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:31:19.544 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:19.544 -07 000000512 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:19.574 -07 000000512 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:31:19.574 -07 000000512 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:31:19.574 -07 000000512 INF: Y Motor: Moved to 69.0259 after 1470 ms (table move)
17-03-18 06:31:19.574 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174585 mm (DAC = 38138)
17-03-18 06:31:19.574 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:19.584 -07 000000561 INF: FPGA: Recv ZSGSRD 36468
17-03-18 06:31:19.584 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:31:19.594 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:19.594 -07 000000626 INF: FPGA: Recv ZSGSRD 36465
17-03-18 06:31:19.604 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:31:19.604 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:19.604 -07 000000479 INF: FPGA: Recv ZSGSRD 36464
17-03-18 06:31:19.614 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:19.614 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:19.614 -07 000000437 INF: FPGA: Recv ZSGSRD 36464
17-03-18 06:31:19.624 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:19.624 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:19.624 -07 000000382 INF: FPGA: Recv ZSGSRD 36463
17-03-18 06:31:19.634 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:19.634 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:19.634 -07 000000502 INF: FPGA: Recv ZSGSRD 36464
17-03-18 06:31:19.644 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:19.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:19.644 -07 000000437 INF: FPGA: Recv ZSGSRD 36467
17-03-18 06:31:19.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:19.654 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:19.654 -07 000000502 INF: FPGA: Recv ZSGSRD 36465
17-03-18 06:31:19.664 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:19.664 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:19.664 -07 000000437 INF: FPGA: Recv ZSGSRD 36473
17-03-18 06:31:19.674 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:19.674 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:19.674 -07 000000502 INF: FPGA: Recv ZSGSRD 36469
17-03-18 06:31:19.684 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:19.684 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:19.684 -07 000000487 INF: FPGA: Recv ZPIEZORD 32558
17-03-18 06:31:19.694 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:19.694 -07 000000606 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.819 V. Piezo Error = -8.6 V.
17-03-18 06:31:19.694 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36466 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36465 (-173.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36463 (-173.7 uncal um), Max = 36473 (-173.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:31:19.694 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36466, posNoise = 7, negNoise = 3
17-03-18 06:31:19.694 -07 000000606 INF: Z Motor: After move to -0.174585, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:19.694 -07 000000606 INF: Z Motor: Settle wait time = 1475 ms, measure time = 113 ms (allowed 150 ms), total time = 1588 ms
17-03-18 06:31:19.694 -07 000000606 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-18 06:31:19.734 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 06:31:19.734 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:31:19.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:19.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:19.734 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:19.734 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:19.734 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:31:19.734 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:19.734 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:19.734 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:31:19.744 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:31:19.744 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:31:19.744 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:31:19.744 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:31:19.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:31:19.794 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:31:19.904 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.985358,
17-03-18 06:31:20.094 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:31:20.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:31:20.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:31:20.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:31:20.134 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:31:20.134 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 06:31:20.134 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:31:20.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:31:20.214 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:20.214 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:31:20.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:31:20.234 -07 000000592 INF: Autofocus start
17-03-18 06:31:20.234 -07 000000592 INF: MeasureProfile start
17-03-18 06:31:20.244 -07 000000592 INF: MeasureProfile done
17-03-18 06:31:20.244 -07 000000592 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:31:20.244 -07 000000592 INF: Autofocus finished
17-03-18 06:31:20.254 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:20.254 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:20.264 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:31:20.274 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:31:20.474 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:31:20.474 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:31:20.474 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.17458867197259. ----------
17-03-18 06:31:20.474 -07 000000610 INF: Cycle	150	Tile	12	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:31:20.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36671, sync = True, waitForSettling = True)
17-03-18 06:31:20.484 -07 000000610 INF: Z Motor: Moving to -0.167869 mm, started at -0.174589 mm, distance = 6.72 um
17-03-18 06:31:20.484 -07 000000610 INF: FPGA: Xmit ZDACW 36671\n [Z Motor]
17-03-18 06:31:20.484 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 06:31:20.494 -07 000000610 INF: FPGA: 'ZDACW 36671' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:31:20.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:20.494 -07 000000626 INF: FPGA: Recv ZDACR 36671
17-03-18 06:31:20.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:20.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:20.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:20.654 -07 000000487 INF: FPGA: Recv ZSGSRD 35420
17-03-18 06:31:20.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:20.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:20.664 -07 000000382 INF: FPGA: Recv ZSGSRD 35428
17-03-18 06:31:20.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:20.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:20.674 -07 000000447 INF: FPGA: Recv ZSGSRD 35422
17-03-18 06:31:20.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:20.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:20.684 -07 000000487 INF: FPGA: Recv ZSGSRD 35420
17-03-18 06:31:20.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:20.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:20.694 -07 000000382 INF: FPGA: Recv ZSGSRD 35428
17-03-18 06:31:20.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:20.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:20.704 -07 000000487 INF: FPGA: Recv ZSGSRD 35422
17-03-18 06:31:20.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:20.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:20.714 -07 000000438 INF: FPGA: Recv ZSGSRD 35425
17-03-18 06:31:20.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:20.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:20.724 -07 000000479 INF: FPGA: Recv ZSGSRD 35426
17-03-18 06:31:20.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:20.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:20.734 -07 000000438 INF: FPGA: Recv ZSGSRD 35422
17-03-18 06:31:20.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:20.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:20.744 -07 000000479 INF: FPGA: Recv ZSGSRD 35420
17-03-18 06:31:20.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:20.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:20.754 -07 000000438 INF: FPGA: Recv ZPIEZORD 31133
17-03-18 06:31:20.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:20.764 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.596 V. Piezo Error = -9.4 V.
17-03-18 06:31:20.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35423 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35422 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35420 (-167.0 uncal um), Max = 35428 (-167.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:31:20.764 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35423, posNoise = 5, negNoise = 3
17-03-18 06:31:20.764 -07 000000610 INF: Z Motor: After move to -0.167869, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:20.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:31:20.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:20.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:20.764 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:20.764 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:20.764 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:20.764 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:20.764 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:20.764 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:20.764 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:20.764 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:20.764 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:31:20.764 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:20.774 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:31:20.774 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:20.774 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:31:20.774 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:20.784 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:31:20.784 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:31:20.784 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:31:20.784 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:31:20.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36847 150\n [Camera]
17-03-18 06:31:20.984 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:31:21.444 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:31:21.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:31:21.444 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:21.444 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:31:21.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:31:21.454 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:21.454 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:31:21.454 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:21.454 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:21.454 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:31:21.634 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36847 846
17-03-18 06:31:21.784 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:21.834 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:31:21.834 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:31:21.834 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:21.834 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:31:21.834 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:31:21.834 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:21.834 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:21.844 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:21.844 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:31:21.844 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:31:21.864 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:31:21.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:31:22.004 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:31:22.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:31:22.014 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:22.014 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:31:22.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:31:22.014 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:22.014 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:22.014 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 06:31:22.014 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:22.014 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 06:31:22.204 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:31:22.204 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:22.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36847 150' command took 2 ms to send, 1411 ms to get response, and 1418 ms overall
17-03-18 06:31:22.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:31:22.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.167888218708733. ------
17-03-18 06:31:22.204 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:22.204 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17432 mm
17-03-18 06:31:22.204 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:22.204 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:22.214 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:31:22.214 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:22.214 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38081, sync = True, waitForSettling = False)
17-03-18 06:31:22.214 -07 000000382 INF: Z Motor: Moving to -0.174324 mm, started at -0.167888 mm, distance = -6.44 um
17-03-18 06:31:22.214 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:31:22.214 -07 000000438 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 06:31:22.224 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:22.224 -07 000000487 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:31:22.234 -07 000000382 INF: FPGA: Xmit ZDACW 38081\n [Z Motor]
17-03-18 06:31:22.234 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:31:22.234 -07 000000438 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:22.234 -07 000000438 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:31:22.234 -07 000000438 INF: Y Motor: Moving 1355 steps-34
17-03-18 06:31:22.234 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 06:31:22.244 -07 000000382 INF: FPGA: 'ZDACW 38081' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:31:22.244 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:22.244 -07 000000502 INF: FPGA: Recv ZDACR 38081
17-03-18 06:31:22.254 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:22.254 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:31:22.254 -07 000000382 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 06:31:22.414 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:22.414 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 06:31:22.414 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:31:22.414 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:31:22.424 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:22.424 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:31:22.424 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:31:22.424 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:22.424 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:31:22.424 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 06:31:22.424 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:22.434 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 06:31:22.624 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 06:31:22.624 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:31:22.674 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:22.684 -07 000000447 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:31:22.684 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:31:22.684 -07 000000438 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:22.684 -07 000000438 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:31:22.684 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-18 06:31:23.634 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:23.634 -07 000000424 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:31:23.644 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:23.644 -07 000000438 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:23.674 -07 000000438 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:31:23.674 -07 000000438 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:31:23.674 -07 000000438 INF: Y Motor: Moved to 69.8623 after 1460 ms (table move)
17-03-18 06:31:23.674 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174324 mm (DAC = 38081)
17-03-18 06:31:23.674 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:23.674 -07 000000447 INF: FPGA: Recv ZSGSRD 36425
17-03-18 06:31:23.684 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:31:23.684 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:23.684 -07 000000606 INF: FPGA: Recv ZSGSRD 36431
17-03-18 06:31:23.694 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:23.694 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:23.694 -07 000000437 INF: FPGA: Recv ZSGSRD 36425
17-03-18 06:31:23.704 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:23.704 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:23.704 -07 000000437 INF: FPGA: Recv ZSGSRD 36426
17-03-18 06:31:23.714 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:23.714 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:23.714 -07 000000382 INF: FPGA: Recv ZSGSRD 36424
17-03-18 06:31:23.724 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:23.724 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:23.724 -07 000000438 INF: FPGA: Recv ZSGSRD 36418
17-03-18 06:31:23.734 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:23.734 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:23.734 -07 000000437 INF: FPGA: Recv ZSGSRD 36431
17-03-18 06:31:23.744 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:23.744 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:23.744 -07 000000447 INF: FPGA: Recv ZSGSRD 36426
17-03-18 06:31:23.754 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:23.754 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:23.754 -07 000000382 INF: FPGA: Recv ZSGSRD 36423
17-03-18 06:31:23.764 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:23.764 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:23.764 -07 000000438 INF: FPGA: Recv ZSGSRD 36428
17-03-18 06:31:23.774 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:23.774 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:23.774 -07 000000437 INF: FPGA: Recv ZPIEZORD 32484
17-03-18 06:31:23.784 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:23.784 -07 000000512 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.811 V. Piezo Error = -8.7 V.
17-03-18 06:31:23.784 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36426 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36426 (-173.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36418 (-173.4 uncal um), Max = 36431 (-173.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:31:23.784 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36426, posNoise = 5, negNoise = 8
17-03-18 06:31:23.784 -07 000000512 INF: Z Motor: After move to -0.174324, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:23.784 -07 000000512 INF: Z Motor: Settle wait time = 1464 ms, measure time = 106 ms (allowed 150 ms), total time = 1570 ms
17-03-18 06:31:23.784 -07 000000512 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:31:23.834 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 06:31:23.834 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:31:23.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:23.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:23.834 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:23.834 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:23.834 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:31:23.834 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:23.834 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:23.834 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:31:23.844 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:31:23.844 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:31:23.844 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:31:23.844 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:31:23.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:31:23.894 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:31:24.194 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:31:24.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:31:24.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:31:24.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2620985504, 0x0, 559484976) start.
17-03-18 06:31:24.234 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:31:24.234 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 06:31:24.234 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:31:24.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2620985504, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:31:24.314 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:24.314 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:31:24.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:31:24.334 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:24.334 -07 000000590 INF: Autofocus start
17-03-18 06:31:24.334 -07 000000590 INF: MeasureProfile start
17-03-18 06:31:24.334 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:24.344 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:31:24.344 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:31:24.354 -07 000000590 INF: MeasureProfile done
17-03-18 06:31:24.354 -07 000000590 INF: X=-32  Z correction [um]=-0.2344
17-03-18 06:31:24.354 -07 000000590 INF: Autofocus finished
17-03-18 06:31:24.544 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:31:24.544 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:31:24.544 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.17433170348692. ----------
17-03-18 06:31:24.544 -07 000000610 INF: Cycle	150	Tile	13	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:31:24.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36543, sync = True, waitForSettling = True)
17-03-18 06:31:24.554 -07 000000610 INF: Z Motor: Moving to -0.167283 mm, started at -0.174332 mm, distance = 7.05 um
17-03-18 06:31:24.554 -07 000000610 INF: FPGA: Xmit ZDACW 36543\n [Z Motor]
17-03-18 06:31:24.554 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:31:24.564 -07 000000610 INF: FPGA: 'ZDACW 36543' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:24.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:24.564 -07 000000590 INF: FPGA: Recv ZDACR 36543
17-03-18 06:31:24.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:24.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:24.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:24.724 -07 000000561 INF: FPGA: Recv ZSGSRD 35334
17-03-18 06:31:24.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:24.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:24.734 -07 000000502 INF: FPGA: Recv ZSGSRD 35334
17-03-18 06:31:24.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:24.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:24.744 -07 000000561 INF: FPGA: Recv ZSGSRD 35329
17-03-18 06:31:24.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:24.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:24.754 -07 000000626 INF: FPGA: Recv ZSGSRD 35332
17-03-18 06:31:24.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:24.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:24.764 -07 000000437 INF: FPGA: Recv ZSGSRD 35330
17-03-18 06:31:24.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:24.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:24.774 -07 000000502 INF: FPGA: Recv ZSGSRD 35324
17-03-18 06:31:24.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:24.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:24.784 -07 000000437 INF: FPGA: Recv ZSGSRD 35334
17-03-18 06:31:24.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:24.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:24.794 -07 000000447 INF: FPGA: Recv ZSGSRD 35333
17-03-18 06:31:24.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:24.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:24.804 -07 000000487 INF: FPGA: Recv ZSGSRD 35336
17-03-18 06:31:24.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:24.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:24.814 -07 000000479 INF: FPGA: Recv ZSGSRD 35328
17-03-18 06:31:24.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:24.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:24.824 -07 000000424 INF: FPGA: Recv ZPIEZORD 31039
17-03-18 06:31:24.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:24.834 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.576 V. Piezo Error = -9.5 V.
17-03-18 06:31:24.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35331 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35332 (-166.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35324 (-166.4 uncal um), Max = 35336 (-166.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:31:24.834 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35331, posNoise = 5, negNoise = 7
17-03-18 06:31:24.834 -07 000000610 INF: Z Motor: After move to -0.167283, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:24.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:31:24.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:24.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:24.834 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:24.834 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:24.834 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:24.834 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:24.834 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:31:24.834 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:24.834 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:24.834 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:24.834 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:31:24.834 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:24.844 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:31:24.844 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:24.844 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:31:24.844 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:24.844 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:31:24.844 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:31:24.854 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:31:24.854 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:31:24.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36719 150\n [Camera]
17-03-18 06:31:25.054 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:31:25.274 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.999021,
17-03-18 06:31:25.514 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:31:25.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:31:25.514 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:25.514 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:25.514 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:31:25.514 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:31:25.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:31:25.514 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:25.514 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:25.514 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:31:25.704 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36719 846
17-03-18 06:31:25.854 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:25.904 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:31:25.904 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:31:25.904 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:25.914 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:25.914 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:31:25.914 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:31:25.914 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:31:25.914 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:25.914 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:25.924 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:31:26.084 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:31:26.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:31:26.084 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:31:26.084 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:26.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:31:26.084 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:26.084 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:31:26.084 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:26.084 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:26.084 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:31:26.274 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:31:26.274 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:26.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36719 150' command took 2 ms to send, 1412 ms to get response, and 1417 ms overall
17-03-18 06:31:26.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:31:26.274 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167297191191691. ------
17-03-18 06:31:26.274 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17368 mm
17-03-18 06:31:26.274 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:26.274 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:26.284 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37941, sync = True, waitForSettling = False)
17-03-18 06:31:26.284 -07 000000561 INF: Z Motor: Moving to -0.173683 mm, started at -0.167297 mm, distance = -6.39 um
17-03-18 06:31:26.284 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:31:26.284 -07 000000626 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 06:31:26.284 -07 000000561 INF: FPGA: Xmit ZDACW 37941\n [Z Motor]
17-03-18 06:31:26.284 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:26.284 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:31:26.284 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:31:26.294 -07 000000561 INF: FPGA: 'ZDACW 37941' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:31:26.294 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:26.294 -07 000000590 INF: FPGA: Recv ZDACR 37941
17-03-18 06:31:26.304 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:26.304 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:26.304 -07 000000561 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-18 06:31:26.414 -07 000000502 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:31:26.414 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 134 ms overall
17-03-18 06:31:26.414 -07 000000626 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:26.414 -07 000000626 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:31:26.414 -07 000000626 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:31:26.414 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:26.424 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:31:26.474 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 06:31:26.474 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:31:26.474 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:26.474 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 06:31:26.474 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:31:26.474 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:26.474 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:26.484 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:31:26.484 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:31:26.484 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:31:26.614 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:26.614 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 199 ms to get response, and 336 ms overall
17-03-18 06:31:26.794 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:31:26.794 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 06:31:26.854 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:26.854 -07 000000480 INF: FPGA: Recv YRDPOS 144767
17-03-18 06:31:26.864 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:26.864 -07 000000626 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:26.864 -07 000000626 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:31:26.864 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.840 mm, average velocity = 2.206 mm/sec
17-03-18 06:31:26.864 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:31:26.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:31:27.814 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:27.814 -07 000000487 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:31:27.824 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:27.824 -07 000000626 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:27.854 -07 000000626 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:31:27.854 -07 000000626 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:31:27.854 -07 000000626 INF: Y Motor: Moved to 70.6875 after 1571 ms (table move)
17-03-18 06:31:27.854 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173683 mm (DAC = 37941)
17-03-18 06:31:27.854 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:27.864 -07 000000592 INF: FPGA: Recv ZSGSRD 36339
17-03-18 06:31:27.864 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:31:27.864 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:27.864 -07 000000502 INF: FPGA: Recv ZSGSRD 36328
17-03-18 06:31:27.874 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:27.874 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:27.874 -07 000000437 INF: FPGA: Recv ZSGSRD 36327
17-03-18 06:31:27.884 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:27.884 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:27.884 -07 000000438 INF: FPGA: Recv ZSGSRD 36323
17-03-18 06:31:27.894 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:27.894 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:27.894 -07 000000382 INF: FPGA: Recv ZSGSRD 36321
17-03-18 06:31:27.904 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:27.904 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:27.904 -07 000000512 INF: FPGA: Recv ZSGSRD 36329
17-03-18 06:31:27.914 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:27.914 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:27.914 -07 000000585 INF: FPGA: Recv ZSGSRD 36325
17-03-18 06:31:27.924 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:27.924 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:27.924 -07 000000626 INF: FPGA: Recv ZSGSRD 36325
17-03-18 06:31:27.934 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:27.934 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:27.934 -07 000000592 INF: FPGA: Recv ZSGSRD 36328
17-03-18 06:31:27.944 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:27.944 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:27.944 -07 000000606 INF: FPGA: Recv ZSGSRD 36327
17-03-18 06:31:27.954 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:27.954 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:27.954 -07 000000590 INF: FPGA: Recv ZPIEZORD 32368
17-03-18 06:31:27.964 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:27.964 -07 000000447 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.7 V.
17-03-18 06:31:27.964 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36327 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36327 (-172.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36321 (-172.8 uncal um), Max = 36339 (-172.9 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:31:27.964 -07 000000447 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36327, posNoise = 12, negNoise = 6
17-03-18 06:31:27.964 -07 000000447 INF: Z Motor: After move to -0.173683, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:27.964 -07 000000447 INF: Z Motor: Settle wait time = 1575 ms, measure time = 103 ms (allowed 150 ms), total time = 1678 ms
17-03-18 06:31:27.964 -07 000000447 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:31:28.014 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1731 ms
17-03-18 06:31:28.014 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:31:28.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:28.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:28.014 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:28.014 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:28.014 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:31:28.014 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:28.014 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:28.014 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:31:28.024 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:31:28.024 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:31:28.024 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:31:28.024 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:31:28.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:31:28.074 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:31:28.374 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:31:28.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:31:28.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:31:28.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:31:28.414 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:31:28.414 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 06:31:28.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:31:28.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:31:28.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:28.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:31:28.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:31:28.514 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:28.514 -07 000000592 INF: Autofocus start
17-03-18 06:31:28.514 -07 000000592 INF: MeasureProfile start
17-03-18 06:31:28.514 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:28.524 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:31:28.524 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:31:28.524 -07 000000592 INF: MeasureProfile done
17-03-18 06:31:28.534 -07 000000592 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:31:28.534 -07 000000592 INF: Autofocus finished
17-03-18 06:31:28.724 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:31:28.724 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:31:28.724 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.173695706484885. ----------
17-03-18 06:31:28.724 -07 000000610 INF: Cycle	150	Tile	14	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:31:28.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36456, sync = True, waitForSettling = True)
17-03-18 06:31:28.734 -07 000000610 INF: Z Motor: Moving to -0.166885 mm, started at -0.173696 mm, distance = 6.81 um
17-03-18 06:31:28.734 -07 000000610 INF: FPGA: Xmit ZDACW 36456\n [Z Motor]
17-03-18 06:31:28.734 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:31:28.744 -07 000000610 INF: FPGA: 'ZDACW 36456' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:31:28.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:28.744 -07 000000382 INF: FPGA: Recv ZDACR 36456
17-03-18 06:31:28.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:28.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:28.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:28.904 -07 000000561 INF: FPGA: Recv ZSGSRD 35267
17-03-18 06:31:28.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:28.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:28.914 -07 000000480 INF: FPGA: Recv ZSGSRD 35269
17-03-18 06:31:28.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:28.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:28.924 -07 000000479 INF: FPGA: Recv ZSGSRD 35272
17-03-18 06:31:28.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:28.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:28.934 -07 000000382 INF: FPGA: Recv ZSGSRD 35268
17-03-18 06:31:28.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:28.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:28.944 -07 000000502 INF: FPGA: Recv ZSGSRD 35263
17-03-18 06:31:28.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:28.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:28.954 -07 000000424 INF: FPGA: Recv ZSGSRD 35271
17-03-18 06:31:28.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:28.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:28.964 -07 000000438 INF: FPGA: Recv ZSGSRD 35269
17-03-18 06:31:28.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:28.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:28.974 -07 000000480 INF: FPGA: Recv ZSGSRD 35262
17-03-18 06:31:28.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:28.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:28.984 -07 000000447 INF: FPGA: Recv ZSGSRD 35269
17-03-18 06:31:28.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:28.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:28.994 -07 000000592 INF: FPGA: Recv ZSGSRD 35267
17-03-18 06:31:29.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:29.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:29.004 -07 000000438 INF: FPGA: Recv ZPIEZORD 30945
17-03-18 06:31:29.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:29.014 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.563 V. Piezo Error = -9.5 V.
17-03-18 06:31:29.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35268 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35268 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35262 (-166.0 uncal um), Max = 35272 (-166.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:31:29.014 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35268, posNoise = 4, negNoise = 6
17-03-18 06:31:29.014 -07 000000610 INF: Z Motor: After move to -0.166885, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:29.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:31:29.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:29.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:29.014 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:29.014 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:29.014 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:29.014 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:29.014 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:29.014 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:29.014 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:31:29.014 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:29.014 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:29.014 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:29.024 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:31:29.024 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:29.024 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:31:29.024 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:29.034 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:31:29.034 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:31:29.034 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:31:29.034 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:31:29.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36633 150\n [Camera]
17-03-18 06:31:29.234 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:31:29.694 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:31:29.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:31:29.694 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:29.694 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:31:29.704 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:29.704 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:31:29.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:31:29.704 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:29.704 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:29.704 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:31:29.884 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36633 846
17-03-18 06:31:30.034 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:30.094 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:31:30.094 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:31:30.094 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:30.104 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:30.104 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:31:30.104 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:31:30.104 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:30.104 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:31:30.104 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:30.114 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:31:30.254 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:31:30.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:31:30.264 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:30.264 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:31:30.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:31:30.264 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:30.264 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:30.264 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 06:31:30.264 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:30.264 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:31:30.454 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:31:30.454 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:30.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36633 150' command took 2 ms to send, 1411 ms to get response, and 1418 ms overall
17-03-18 06:31:30.454 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:31:30.454 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.16689246582676. ------
17-03-18 06:31:30.454 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:30.454 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17365 mm
17-03-18 06:31:30.574 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:30.574 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:30.574 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-18 06:31:30.574 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:30.574 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 37933, sync = True, waitForSettling = False)
17-03-18 06:31:30.574 -07 000000592 INF: Z Motor: Moving to -0.173646 mm, started at -0.166892 mm, distance = -6.75 um
17-03-18 06:31:30.574 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:31:30.574 -07 000000447 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 06:31:30.584 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:30.584 -07 000000479 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:31:30.594 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:30.594 -07 000000447 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:30.594 -07 000000447 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:31:30.594 -07 000000447 INF: Y Motor: Moving 1352 steps-32
17-03-18 06:31:30.594 -07 000000592 INF: FPGA: Xmit ZDACW 37933\n [Z Motor]
17-03-18 06:31:30.594 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:31:30.604 -07 000000592 INF: FPGA: 'ZDACW 37933' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:31:30.604 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:30.604 -07 000000561 INF: FPGA: Recv ZDACR 37933
17-03-18 06:31:30.614 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:31:30.614 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:30.614 -07 000000592 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 06:31:30.644 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.02213,
17-03-18 06:31:30.664 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:31:30.664 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:31:30.664 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:30.664 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:31:30.664 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:31:30.664 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:30.664 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:30.674 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:30.674 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:31:30.674 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:31:30.774 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:30.774 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-18 06:31:30.984 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 06:31:30.984 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 06:31:31.044 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:31.044 -07 000000606 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:31:31.054 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:31.054 -07 000000447 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:31.054 -07 000000447 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:31:31.054 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-18 06:31:31.864 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:31:31.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:31:32.004 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:32.004 -07 000000424 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:31:32.014 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:32.014 -07 000000447 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:32.044 -07 000000447 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:31:32.044 -07 000000447 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:31:32.044 -07 000000447 INF: Y Motor: Moved to 71.5176 after 1463 ms (table move)
17-03-18 06:31:32.044 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173646 mm (DAC = 37933)
17-03-18 06:31:32.044 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:32.054 -07 000000382 INF: FPGA: Recv ZSGSRD 36319
17-03-18 06:31:32.054 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:31:32.054 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:32.054 -07 000000424 INF: FPGA: Recv ZSGSRD 36324
17-03-18 06:31:32.064 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:32.064 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:32.064 -07 000000447 INF: FPGA: Recv ZSGSRD 36324
17-03-18 06:31:32.074 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:32.074 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:32.074 -07 000000447 INF: FPGA: Recv ZSGSRD 36320
17-03-18 06:31:32.084 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:32.084 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:32.084 -07 000000438 INF: FPGA: Recv ZSGSRD 36316
17-03-18 06:31:32.094 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:32.094 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:32.094 -07 000000437 INF: FPGA: Recv ZSGSRD 36320
17-03-18 06:31:32.104 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:32.104 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:32.104 -07 000000585 INF: FPGA: Recv ZSGSRD 36318
17-03-18 06:31:32.114 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:32.114 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:32.114 -07 000000437 INF: FPGA: Recv ZSGSRD 36321
17-03-18 06:31:32.124 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:32.124 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:32.124 -07 000000592 INF: FPGA: Recv ZSGSRD 36323
17-03-18 06:31:32.134 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:32.134 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:32.134 -07 000000585 INF: FPGA: Recv ZSGSRD 36322
17-03-18 06:31:32.144 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:32.144 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:32.144 -07 000000437 INF: FPGA: Recv ZPIEZORD 32363
17-03-18 06:31:32.154 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:32.154 -07 000000591 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.788 V. Piezo Error = -8.7 V.
17-03-18 06:31:32.154 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36321 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36320 (-172.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36316 (-172.7 uncal um), Max = 36324 (-172.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:31:32.154 -07 000000591 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36321, posNoise = 3, negNoise = 5
17-03-18 06:31:32.154 -07 000000591 INF: Z Motor: After move to -0.173646, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:32.154 -07 000000591 INF: Z Motor: Settle wait time = 1467 ms, measure time = 104 ms (allowed 150 ms), total time = 1571 ms
17-03-18 06:31:32.154 -07 000000591 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:31:32.204 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1742 ms
17-03-18 06:31:32.204 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:31:32.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:32.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:32.204 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:32.204 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:31:32.204 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:32.204 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:32.204 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:31:32.204 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:31:32.214 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:31:32.214 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:31:32.214 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:31:32.214 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:31:32.224 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:31:32.264 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:31:32.564 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:31:32.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:31:32.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:31:32.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:31:32.604 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:31:32.604 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 06:31:32.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:31:32.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:31:32.684 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:32.684 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:31:32.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:31:32.704 -07 000000437 INF: Autofocus start
17-03-18 06:31:32.704 -07 000000437 INF: MeasureProfile start
17-03-18 06:31:32.704 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:32.714 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:32.714 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:31:32.714 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:31:32.724 -07 000000437 INF: MeasureProfile done
17-03-18 06:31:32.724 -07 000000437 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:31:32.724 -07 000000437 INF: Autofocus finished
17-03-18 06:31:32.914 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:31:32.914 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:31:32.914 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.173657161212035. ----------
17-03-18 06:31:32.914 -07 000000610 INF: Cycle	150	Tile	15	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:31:32.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36466, sync = True, waitForSettling = True)
17-03-18 06:31:32.924 -07 000000610 INF: Z Motor: Moving to -0.166931 mm, started at -0.173657 mm, distance = 6.73 um
17-03-18 06:31:32.924 -07 000000610 INF: FPGA: Xmit ZDACW 36466\n [Z Motor]
17-03-18 06:31:32.924 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:31:32.934 -07 000000610 INF: FPGA: 'ZDACW 36466' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:31:32.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:32.934 -07 000000480 INF: FPGA: Recv ZDACR 36466
17-03-18 06:31:32.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:32.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:33.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:33.094 -07 000000424 INF: FPGA: Recv ZSGSRD 35273
17-03-18 06:31:33.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:33.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:33.104 -07 000000561 INF: FPGA: Recv ZSGSRD 35274
17-03-18 06:31:33.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:33.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:33.114 -07 000000606 INF: FPGA: Recv ZSGSRD 35276
17-03-18 06:31:33.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:33.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:33.124 -07 000000502 INF: FPGA: Recv ZSGSRD 35276
17-03-18 06:31:33.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:33.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:33.134 -07 000000424 INF: FPGA: Recv ZSGSRD 35273
17-03-18 06:31:33.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:33.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:33.144 -07 000000382 INF: FPGA: Recv ZSGSRD 35275
17-03-18 06:31:33.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:33.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:33.154 -07 000000606 INF: FPGA: Recv ZSGSRD 35282
17-03-18 06:31:33.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:33.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:33.164 -07 000000502 INF: FPGA: Recv ZSGSRD 35275
17-03-18 06:31:33.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:33.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:33.174 -07 000000424 INF: FPGA: Recv ZSGSRD 35273
17-03-18 06:31:33.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:33.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:33.184 -07 000000591 INF: FPGA: Recv ZSGSRD 35281
17-03-18 06:31:33.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:33.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:33.194 -07 000000447 INF: FPGA: Recv ZPIEZORD 30984
17-03-18 06:31:33.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:33.204 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.564 V. Piezo Error = -9.5 V.
17-03-18 06:31:33.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35276 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35275 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35273 (-166.1 uncal um), Max = 35282 (-166.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:31:33.204 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35276, posNoise = 6, negNoise = 3
17-03-18 06:31:33.204 -07 000000610 INF: Z Motor: After move to -0.166931, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:33.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:31:33.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:33.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:33.214 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:33.214 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:33.214 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:33.214 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:33.214 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:33.224 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:33.224 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:31:33.224 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:33.224 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-18 06:31:33.224 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:33.224 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:31:33.224 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:33.224 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:31:33.224 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:33.244 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:31:33.244 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 27 ms.
17-03-18 06:31:33.244 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:31:33.244 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 25 ms.
17-03-18 06:31:33.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36643 150\n [Camera]
17-03-18 06:31:33.444 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:31:33.904 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:31:33.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:31:33.904 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:33.904 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:31:33.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:31:33.914 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:33.914 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:33.914 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:31:33.914 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:33.914 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:31:34.094 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36643 846
17-03-18 06:31:34.254 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:34.304 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:31:34.304 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:31:34.304 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:34.314 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:31:34.314 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:31:34.314 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:34.314 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:34.314 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:31:34.314 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:34.324 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:31:34.474 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:31:34.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:31:34.474 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:34.474 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:31:34.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:31:34.474 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:34.474 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:31:34.474 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:34.474 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:34.474 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) start.
17-03-18 06:31:34.664 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:31:34.664 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:34.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36643 150' command took 2 ms to send, 1413 ms to get response, and 1418 ms overall
17-03-18 06:31:34.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:31:34.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.166943859523894. ------
17-03-18 06:31:34.664 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:34.664 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17315 mm
17-03-18 06:31:34.664 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:34.674 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:31:34.674 -07 000000502 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 06:31:34.674 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:34.674 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:34.674 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:31:34.674 -07 000000585 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:31:34.674 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 37825, sync = True, waitForSettling = False)
17-03-18 06:31:34.674 -07 000000592 INF: Z Motor: Moving to -0.173152 mm, started at -0.166944 mm, distance = -6.21 um
17-03-18 06:31:34.684 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:34.684 -07 000000592 INF: FPGA: Xmit ZDACW 37825\n [Z Motor]
17-03-18 06:31:34.684 -07 000000502 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:34.684 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:31:34.684 -07 000000502 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:31:34.684 -07 000000502 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:31:34.694 -07 000000592 INF: FPGA: 'ZDACW 37825' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:31:34.694 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:34.704 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:31:34.714 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:34.714 -07 000000585 INF: FPGA: Recv ZDACR 37825
17-03-18 06:31:34.724 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:31:34.724 -07 000000592 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 06:31:34.874 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:31:34.874 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:31:34.874 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:34.884 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:31:34.884 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:31:34.884 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:34.884 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:34.884 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:34.884 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:31:34.894 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:31:34.894 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:34.894 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 06:31:35.074 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:31:35.074 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 06:31:35.134 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:35.134 -07 000000626 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:31:35.144 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:35.144 -07 000000502 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:35.144 -07 000000502 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:31:35.144 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.150 mm/sec
17-03-18 06:31:36.024 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.996267,
17-03-18 06:31:36.094 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:36.094 -07 000000479 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:31:36.104 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:36.104 -07 000000502 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:36.134 -07 000000502 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:31:36.134 -07 000000502 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:31:36.134 -07 000000502 INF: Y Motor: Moved to 72.3486 after 1464 ms (table move)
17-03-18 06:31:36.134 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173152 mm (DAC = 37825)
17-03-18 06:31:36.134 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:36.144 -07 000000480 INF: FPGA: Recv ZSGSRD 36244
17-03-18 06:31:36.144 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:31:36.144 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:36.144 -07 000000382 INF: FPGA: Recv ZSGSRD 36249
17-03-18 06:31:36.154 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:31:36.154 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:36.154 -07 000000626 INF: FPGA: Recv ZSGSRD 36240
17-03-18 06:31:36.164 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:36.164 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:36.164 -07 000000502 INF: FPGA: Recv ZSGSRD 36238
17-03-18 06:31:36.174 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:36.174 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:36.174 -07 000000382 INF: FPGA: Recv ZSGSRD 36245
17-03-18 06:31:36.184 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:36.184 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:36.184 -07 000000591 INF: FPGA: Recv ZSGSRD 36247
17-03-18 06:31:36.194 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:36.194 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:36.194 -07 000000502 INF: FPGA: Recv ZSGSRD 36248
17-03-18 06:31:36.204 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:36.204 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:36.204 -07 000000591 INF: FPGA: Recv ZSGSRD 36248
17-03-18 06:31:36.214 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:36.214 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:36.214 -07 000000592 INF: FPGA: Recv ZSGSRD 36241
17-03-18 06:31:36.224 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:36.224 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:36.224 -07 000000626 INF: FPGA: Recv ZSGSRD 36240
17-03-18 06:31:36.234 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:36.234 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:36.234 -07 000000591 INF: FPGA: Recv ZPIEZORD 32312
17-03-18 06:31:36.244 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:36.244 -07 000000437 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.772 V. Piezo Error = -8.7 V.
17-03-18 06:31:36.244 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36244 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36244 (-172.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36238 (-172.2 uncal um), Max = 36249 (-172.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:31:36.244 -07 000000437 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36244, posNoise = 5, negNoise = 6
17-03-18 06:31:36.244 -07 000000437 INF: Z Motor: After move to -0.173152, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:36.244 -07 000000437 INF: Z Motor: Settle wait time = 1463 ms, measure time = 102 ms (allowed 150 ms), total time = 1565 ms
17-03-18 06:31:36.244 -07 000000437 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:31:36.294 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 06:31:36.294 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:31:36.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:36.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:36.294 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:36.294 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:36.294 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:31:36.294 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:36.294 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:31:36.294 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:31:36.304 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:31:36.304 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:31:36.304 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:31:36.304 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:31:36.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:31:36.354 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:31:36.654 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:31:36.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:31:36.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:31:36.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2736656032, 0x0, 559484976) start.
17-03-18 06:31:36.694 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:31:36.694 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 06:31:36.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:31:36.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2736656032, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:31:36.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:36.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:31:36.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:31:36.794 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:36.794 -07 000000479 INF: Autofocus start
17-03-18 06:31:36.794 -07 000000479 INF: MeasureProfile start
17-03-18 06:31:36.794 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:36.804 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:31:36.804 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:31:36.804 -07 000000479 INF: MeasureProfile done
17-03-18 06:31:36.804 -07 000000479 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:31:36.804 -07 000000479 INF: Autofocus finished
17-03-18 06:31:36.864 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:31:36.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:31:37.004 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:31:37.004 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:31:37.004 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.173162496877119. ----------
17-03-18 06:31:37.004 -07 000000610 INF: Cycle	150	Tile	16	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:31:37.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36376, sync = True, waitForSettling = True)
17-03-18 06:31:37.014 -07 000000610 INF: Z Motor: Moving to -0.166519 mm, started at -0.173162 mm, distance = 6.64 um
17-03-18 06:31:37.014 -07 000000610 INF: FPGA: Xmit ZDACW 36376\n [Z Motor]
17-03-18 06:31:37.014 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:31:37.024 -07 000000610 INF: FPGA: 'ZDACW 36376' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:37.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:37.024 -07 000000437 INF: FPGA: Recv ZDACR 36376
17-03-18 06:31:37.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:37.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:37.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:37.184 -07 000000382 INF: FPGA: Recv ZSGSRD 35208
17-03-18 06:31:37.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:37.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:37.194 -07 000000447 INF: FPGA: Recv ZSGSRD 35216
17-03-18 06:31:37.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:37.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:37.204 -07 000000626 INF: FPGA: Recv ZSGSRD 35214
17-03-18 06:31:37.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:37.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:37.214 -07 000000437 INF: FPGA: Recv ZSGSRD 35208
17-03-18 06:31:37.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:37.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:37.224 -07 000000585 INF: FPGA: Recv ZSGSRD 35216
17-03-18 06:31:37.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:37.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:37.234 -07 000000438 INF: FPGA: Recv ZSGSRD 35211
17-03-18 06:31:37.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:37.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:37.244 -07 000000626 INF: FPGA: Recv ZSGSRD 35217
17-03-18 06:31:37.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:37.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:37.254 -07 000000479 INF: FPGA: Recv ZSGSRD 35210
17-03-18 06:31:37.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:37.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:37.264 -07 000000382 INF: FPGA: Recv ZSGSRD 35205
17-03-18 06:31:37.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:37.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:37.274 -07 000000438 INF: FPGA: Recv ZSGSRD 35219
17-03-18 06:31:37.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:37.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:37.284 -07 000000480 INF: FPGA: Recv ZPIEZORD 30932
17-03-18 06:31:37.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:37.294 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.551 V. Piezo Error = -9.4 V.
17-03-18 06:31:37.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35212 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35212 (-165.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35205 (-165.6 uncal um), Max = 35219 (-165.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:31:37.294 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35212, posNoise = 7, negNoise = 7
17-03-18 06:31:37.294 -07 000000610 INF: Z Motor: After move to -0.166519, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:37.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:31:37.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:37.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:37.294 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:37.294 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:37.294 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:37.294 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:37.294 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:37.294 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:37.294 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:37.294 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:37.294 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:31:37.294 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:37.294 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:31:37.294 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:37.304 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 6 ms.
17-03-18 06:31:37.304 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:37.314 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 06:31:37.314 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:31:37.314 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:31:37.314 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:31:37.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36552 150\n [Camera]
17-03-18 06:31:37.514 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:31:37.974 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:31:37.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:31:37.974 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:37.974 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:37.974 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:31:37.984 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:31:37.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:31:37.984 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:37.984 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:37.984 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:31:38.174 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36552 846
17-03-18 06:31:38.314 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:38.364 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:31:38.364 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:31:38.364 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:38.364 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:31:38.364 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:31:38.364 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:38.364 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:38.374 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:38.374 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:31:38.374 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:31:38.544 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:31:38.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:31:38.544 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:38.544 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:38.544 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:31:38.544 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:31:38.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:31:38.544 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:38.544 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:38.544 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:31:38.734 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:31:38.734 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:38.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36552 150' command took 2 ms to send, 1414 ms to get response, and 1418 ms overall
17-03-18 06:31:38.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:31:38.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.166532709946822. ------
17-03-18 06:31:38.734 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:38.734 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17310 mm
17-03-18 06:31:38.734 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:38.744 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:38.744 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37814, sync = True, waitForSettling = False)
17-03-18 06:31:38.744 -07 000000561 INF: Z Motor: Moving to -0.173101 mm, started at -0.166533 mm, distance = -6.57 um
17-03-18 06:31:38.744 -07 000000561 INF: FPGA: Xmit ZDACW 37814\n [Z Motor]
17-03-18 06:31:38.744 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:31:38.744 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:31:38.744 -07 000000424 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 06:31:38.744 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:31:38.754 -07 000000561 INF: FPGA: 'ZDACW 37814' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:31:38.754 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:38.754 -07 000000591 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:31:38.764 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:38.764 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:31:38.764 -07 000000424 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:38.764 -07 000000424 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:31:38.764 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:31:38.774 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:38.884 -07 000000438 INF: FPGA: Recv ZDACR 37814
17-03-18 06:31:38.894 -07 000000561 INF: FPGA: 'ZDACR' command took 117 ms to send, 0 ms to get response, and 140 ms overall
17-03-18 06:31:38.894 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:31:38.894 -07 000000561 INF: Z Motor: MoveAbsStepped took 147 ms (did NOT wait for settling yet))
17-03-18 06:31:38.944 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:31:38.944 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:31:38.944 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:38.944 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:31:38.944 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:31:38.944 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:38.944 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:38.954 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:31:38.954 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:31:38.954 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:31:38.964 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:38.964 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 06:31:39.264 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 06:31:39.264 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 507 ms overall
17-03-18 06:31:39.324 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:39.324 -07 000000606 INF: FPGA: Recv YRDPOS 149861
17-03-18 06:31:39.334 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:31:39.334 -07 000000424 INF: Y Motor: Encoder = 149861 = motor step 117078.9 = 73.1743 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:39.334 -07 000000424 INF: Y Motor: Position error before settling (table move) = -37 encoder counts (-0.018 mm)
17-03-18 06:31:39.334 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 507 ms, distance = 0.844 mm, average velocity = 1.665 mm/sec
17-03-18 06:31:40.284 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:40.284 -07 000000591 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:31:40.294 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:40.294 -07 000000424 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:40.324 -07 000000424 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:31:40.324 -07 000000424 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:31:40.324 -07 000000424 INF: Y Motor: Moved to 73.1748 after 1578 ms (table move)
17-03-18 06:31:40.324 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173101 mm (DAC = 37814)
17-03-18 06:31:40.324 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:40.334 -07 000000592 INF: FPGA: Recv ZSGSRD 36239
17-03-18 06:31:40.334 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 06:31:40.334 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:40.334 -07 000000480 INF: FPGA: Recv ZSGSRD 36233
17-03-18 06:31:40.344 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:31:40.344 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:40.344 -07 000000592 INF: FPGA: Recv ZSGSRD 36235
17-03-18 06:31:40.354 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:40.354 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:40.354 -07 000000591 INF: FPGA: Recv ZSGSRD 36239
17-03-18 06:31:40.364 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:40.364 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:40.364 -07 000000480 INF: FPGA: Recv ZSGSRD 36236
17-03-18 06:31:40.374 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:40.374 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:40.374 -07 000000561 INF: FPGA: Recv ZSGSRD 36236
17-03-18 06:31:40.384 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:40.384 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:40.384 -07 000000606 INF: FPGA: Recv ZSGSRD 36237
17-03-18 06:31:40.394 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:40.394 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:40.394 -07 000000382 INF: FPGA: Recv ZSGSRD 36231
17-03-18 06:31:40.404 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:40.404 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:40.404 -07 000000606 INF: FPGA: Recv ZSGSRD 36239
17-03-18 06:31:40.414 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:40.414 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:40.414 -07 000000424 INF: FPGA: Recv ZSGSRD 36238
17-03-18 06:31:40.424 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:40.424 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:40.424 -07 000000592 INF: FPGA: Recv ZPIEZORD 32286
17-03-18 06:31:40.434 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:40.434 -07 000000585 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.770 V. Piezo Error = -8.7 V.
17-03-18 06:31:40.434 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36236 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36236 (-172.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36231 (-172.2 uncal um), Max = 36239 (-172.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:31:40.434 -07 000000585 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36236, posNoise = 3, negNoise = 5
17-03-18 06:31:40.434 -07 000000585 INF: Z Motor: After move to -0.173101, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:40.434 -07 000000585 INF: Z Motor: Settle wait time = 1584 ms, measure time = 104 ms (allowed 150 ms), total time = 1688 ms
17-03-18 06:31:40.434 -07 000000585 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:31:40.484 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1740 ms
17-03-18 06:31:40.484 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:31:40.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:40.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:40.484 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:40.484 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:40.484 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:31:40.484 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:40.484 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:40.484 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:31:40.494 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:31:40.494 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:31:40.504 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:31:40.504 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:31:40.504 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:31:40.554 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:31:40.854 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:31:40.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:31:40.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:31:40.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:31:40.894 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:31:40.894 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 06:31:40.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 06:31:40.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:31:40.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:40.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:31:40.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:31:40.994 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:40.994 -07 000000382 INF: Autofocus start
17-03-18 06:31:40.994 -07 000000382 INF: MeasureProfile start
17-03-18 06:31:40.994 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:41.004 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:31:41.004 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:31:41.004 -07 000000382 INF: MeasureProfile done
17-03-18 06:31:41.004 -07 000000382 INF: X=-32  Z correction [um]=-0.2344
17-03-18 06:31:41.004 -07 000000382 INF: Autofocus finished
17-03-18 06:31:41.204 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:31:41.204 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:31:41.214 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.173111103179985. ----------
17-03-18 06:31:41.214 -07 000000610 INF: Cycle	150	Tile	17	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:31:41.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36276, sync = True, waitForSettling = True)
17-03-18 06:31:41.214 -07 000000610 INF: Z Motor: Moving to -0.166061 mm, started at -0.173111 mm, distance = 7.05 um
17-03-18 06:31:41.214 -07 000000610 INF: FPGA: Xmit ZDACW 36276\n [Z Motor]
17-03-18 06:31:41.214 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:31:41.224 -07 000000610 INF: FPGA: 'ZDACW 36276' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:31:41.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:41.224 -07 000000437 INF: FPGA: Recv ZDACR 36276
17-03-18 06:31:41.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:41.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:41.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:41.384 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.977204,
17-03-18 06:31:41.384 -07 000000480 INF: FPGA: Recv ZSGSRD 35142
17-03-18 06:31:41.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:41.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:41.414 -07 000000626 INF: FPGA: Recv ZSGSRD 35139
17-03-18 06:31:41.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:31:41.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:41.434 -07 000000592 INF: FPGA: Recv ZSGSRD 35143
17-03-18 06:31:41.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:31:41.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:41.444 -07 000000480 INF: FPGA: Recv ZSGSRD 35142
17-03-18 06:31:41.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:41.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:41.464 -07 000000447 INF: FPGA: Recv ZSGSRD 35140
17-03-18 06:31:41.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:31:41.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:41.484 -07 000000502 INF: FPGA: Recv ZSGSRD 35144
17-03-18 06:31:41.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:31:41.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:41.494 -07 000000591 INF: FPGA: Recv ZSGSRD 35139
17-03-18 06:31:41.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:41.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:41.504 -07 000000626 INF: FPGA: Recv ZSGSRD 35142
17-03-18 06:31:41.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:41.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:41.514 -07 000000438 INF: FPGA: Recv ZSGSRD 35143
17-03-18 06:31:41.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:41.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:41.524 -07 000000561 INF: FPGA: Recv ZSGSRD 35142
17-03-18 06:31:41.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:41.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:41.534 -07 000000480 INF: FPGA: Recv ZPIEZORD 30859
17-03-18 06:31:41.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:41.544 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.535 V. Piezo Error = -9.4 V.
17-03-18 06:31:41.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35142 (-165.2 uncal um), Error = 0.8 uncal um, Median = 35142 (-165.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35139 (-165.2 uncal um), Max = 35144 (-165.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:31:41.544 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35142, posNoise = 2, negNoise = 3
17-03-18 06:31:41.544 -07 000000610 INF: Z Motor: After move to -0.166061, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:41.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-18 06:31:41.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:41.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:41.544 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:41.544 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:41.544 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:41.544 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:41.544 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:41.544 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:41.544 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:31:41.544 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:41.544 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:31:41.544 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:41.554 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:31:41.554 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:41.554 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:31:41.554 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:41.554 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:31:41.564 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:31:41.564 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:31:41.564 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:31:41.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36452 150\n [Camera]
17-03-18 06:31:41.764 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:31:41.864 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:31:41.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:31:42.224 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:31:42.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:31:42.224 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:42.224 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:31:42.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:31:42.224 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:42.224 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:42.224 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:31:42.234 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:42.234 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:31:42.414 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36452 846
17-03-18 06:31:42.564 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:42.604 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:31:42.604 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:31:42.604 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:42.604 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:31:42.604 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:31:42.604 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:42.604 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:42.604 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:31:42.604 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:42.614 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:31:42.784 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:31:42.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:31:42.784 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:42.794 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:31:42.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:31:42.794 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:42.794 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:42.794 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 06:31:42.794 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:42.794 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:31:42.974 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:31:42.984 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:42.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36452 150' command took 2 ms to send, 1410 ms to get response, and 1417 ms overall
17-03-18 06:31:42.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:31:42.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166083015096899. ------
17-03-18 06:31:43.104 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17191 mm
17-03-18 06:31:43.104 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:43.104 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:43.104 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:31:43.104 -07 000000447 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 06:31:43.104 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37554, sync = True, waitForSettling = False)
17-03-18 06:31:43.104 -07 000000502 INF: Z Motor: Moving to -0.171911 mm, started at -0.166083 mm, distance = -5.83 um
17-03-18 06:31:43.114 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:43.114 -07 000000502 INF: FPGA: Xmit ZDACW 37554\n [Z Motor]
17-03-18 06:31:43.114 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:31:43.114 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:31:43.124 -07 000000502 INF: FPGA: 'ZDACW 37554' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:43.124 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:43.124 -07 000000424 INF: FPGA: Recv ZDACR 37554
17-03-18 06:31:43.134 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:43.134 -07 000000502 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 06:31:43.134 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:43.134 -07 000000479 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:31:43.144 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:43.144 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:31:43.144 -07 000000447 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:43.144 -07 000000447 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:31:43.144 -07 000000447 INF: Y Motor: Moving 1356 steps-37
17-03-18 06:31:43.154 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:31:43.194 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:31:43.194 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:31:43.194 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:43.194 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:31:43.194 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:31:43.194 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:43.194 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:43.194 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:31:43.194 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:43.204 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:31:43.344 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:43.344 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 06:31:43.524 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:31:43.524 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:31:43.574 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:43.574 -07 000000585 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:31:43.584 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:43.584 -07 000000447 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:43.584 -07 000000447 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:31:43.584 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.848 mm, average velocity = 2.191 mm/sec
17-03-18 06:31:44.534 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:44.534 -07 000000585 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:31:44.544 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:44.544 -07 000000447 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:44.564 -07 000000447 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:31:44.564 -07 000000447 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:31:44.564 -07 000000447 INF: Y Motor: Moved to 74.0068 after 1455 ms (table move)
17-03-18 06:31:44.564 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171911 mm (DAC = 37554)
17-03-18 06:31:44.564 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:44.574 -07 000000502 INF: FPGA: Recv ZSGSRD 36052
17-03-18 06:31:44.574 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:31:44.574 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:44.574 -07 000000592 INF: FPGA: Recv ZSGSRD 36060
17-03-18 06:31:44.584 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:31:44.584 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:44.584 -07 000000585 INF: FPGA: Recv ZSGSRD 36047
17-03-18 06:31:44.594 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:44.594 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:44.594 -07 000000592 INF: FPGA: Recv ZSGSRD 36043
17-03-18 06:31:44.604 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:44.604 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:44.604 -07 000000447 INF: FPGA: Recv ZSGSRD 36049
17-03-18 06:31:44.614 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:44.614 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:44.614 -07 000000592 INF: FPGA: Recv ZSGSRD 36051
17-03-18 06:31:44.624 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:44.624 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:44.624 -07 000000447 INF: FPGA: Recv ZSGSRD 36053
17-03-18 06:31:44.634 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:44.634 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:44.634 -07 000000592 INF: FPGA: Recv ZSGSRD 36050
17-03-18 06:31:44.644 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:44.644 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:44.644 -07 000000447 INF: FPGA: Recv ZSGSRD 36056
17-03-18 06:31:44.654 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:44.654 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:44.654 -07 000000424 INF: FPGA: Recv ZSGSRD 36057
17-03-18 06:31:44.664 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:44.664 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:44.664 -07 000000626 INF: FPGA: Recv ZPIEZORD 32047
17-03-18 06:31:44.674 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:44.674 -07 000000437 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.730 V. Piezo Error = -8.8 V.
17-03-18 06:31:44.674 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36052 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36052 (-171.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36043 (-171.0 uncal um), Max = 36060 (-171.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:31:44.674 -07 000000437 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36052, posNoise = 8, negNoise = 9
17-03-18 06:31:44.674 -07 000000437 INF: Z Motor: After move to -0.171911, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:44.674 -07 000000437 INF: Z Motor: Settle wait time = 1458 ms, measure time = 103 ms (allowed 150 ms), total time = 1561 ms
17-03-18 06:31:44.674 -07 000000437 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:31:44.724 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 06:31:44.724 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:31:44.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:44.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:44.724 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:44.724 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:44.724 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:31:44.724 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:44.724 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:44.724 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:31:44.734 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:31:44.734 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:31:44.744 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:31:44.744 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:31:44.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:31:44.794 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:31:45.094 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:31:45.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:31:45.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:31:45.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:31:45.124 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:31:45.134 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:31:45.134 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 06:31:45.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:31:45.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:45.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:31:45.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:31:45.234 -07 000000424 INF: Autofocus start
17-03-18 06:31:45.234 -07 000000424 INF: MeasureProfile start
17-03-18 06:31:45.234 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:45.234 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:45.244 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:31:45.244 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:31:45.244 -07 000000424 INF: MeasureProfile done
17-03-18 06:31:45.244 -07 000000424 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:31:45.244 -07 000000424 INF: Autofocus finished
17-03-18 06:31:45.444 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:31:45.444 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:31:45.444 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.171929048145901. ----------
17-03-18 06:31:45.454 -07 000000610 INF: Cycle	150	Tile	18	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:31:45.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36105, sync = True, waitForSettling = True)
17-03-18 06:31:45.454 -07 000000610 INF: Z Motor: Moving to -0.165278 mm, started at -0.171929 mm, distance = 6.65 um
17-03-18 06:31:45.454 -07 000000610 INF: FPGA: Xmit ZDACW 36105\n [Z Motor]
17-03-18 06:31:45.454 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:31:45.464 -07 000000610 INF: FPGA: 'ZDACW 36105' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:31:45.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:45.464 -07 000000626 INF: FPGA: Recv ZDACR 36105
17-03-18 06:31:45.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:45.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:45.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:45.624 -07 000000606 INF: FPGA: Recv ZSGSRD 35012
17-03-18 06:31:45.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:45.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:45.634 -07 000000437 INF: FPGA: Recv ZSGSRD 35020
17-03-18 06:31:45.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:45.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:45.644 -07 000000561 INF: FPGA: Recv ZSGSRD 35017
17-03-18 06:31:45.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:45.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:45.654 -07 000000480 INF: FPGA: Recv ZSGSRD 35012
17-03-18 06:31:45.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:45.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:45.664 -07 000000479 INF: FPGA: Recv ZSGSRD 35020
17-03-18 06:31:45.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:45.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:45.674 -07 000000585 INF: FPGA: Recv ZSGSRD 35025
17-03-18 06:31:45.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:45.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:45.684 -07 000000479 INF: FPGA: Recv ZSGSRD 35022
17-03-18 06:31:45.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:31:45.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:45.694 -07 000000438 INF: FPGA: Recv ZSGSRD 35016
17-03-18 06:31:45.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:45.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:45.704 -07 000000561 INF: FPGA: Recv ZSGSRD 35017
17-03-18 06:31:45.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:45.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:45.714 -07 000000502 INF: FPGA: Recv ZSGSRD 35020
17-03-18 06:31:45.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:45.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:45.724 -07 000000585 INF: FPGA: Recv ZPIEZORD 30691
17-03-18 06:31:45.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:45.734 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.509 V. Piezo Error = -9.5 V.
17-03-18 06:31:45.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35018 (-164.4 uncal um), Error = 0.9 uncal um, Median = 35018 (-164.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35012 (-164.4 uncal um), Max = 35025 (-164.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:31:45.734 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35018, posNoise = 7, negNoise = 6
17-03-18 06:31:45.734 -07 000000610 INF: Z Motor: After move to -0.165278, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:45.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:31:45.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:45.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:45.734 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:45.734 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:45.734 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:45.734 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:45.734 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:45.734 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:45.734 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:31:45.734 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:45.734 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:45.734 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:45.734 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:31:45.734 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:45.744 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:31:45.744 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:45.744 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:31:45.744 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:31:45.744 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:31:45.744 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:31:45.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36282 150\n [Camera]
17-03-18 06:31:45.954 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 06:31:46.414 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:31:46.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:31:46.414 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:46.414 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:31:46.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:31:46.414 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:46.424 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:46.424 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:31:46.424 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:46.424 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:31:46.604 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36282 846
17-03-18 06:31:46.764 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:46.794 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:31:46.794 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:31:46.794 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:46.794 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:31:46.794 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:31:46.794 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:46.804 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.985358,
17-03-18 06:31:46.804 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:46.804 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:31:46.804 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:46.814 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:31:46.864 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:31:46.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:31:46.984 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:31:46.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:31:46.984 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:46.984 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:31:46.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:31:46.984 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:46.984 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:31:46.984 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:46.984 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:46.984 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) start.
17-03-18 06:31:47.174 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:31:47.174 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:47.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36282 150' command took 2 ms to send, 1412 ms to get response, and 1418 ms overall
17-03-18 06:31:47.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:31:47.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.16528641279132. ------
17-03-18 06:31:47.174 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:47.174 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17160 mm
17-03-18 06:31:47.174 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:47.174 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:31:47.174 -07 000000479 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 06:31:47.174 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37487, sync = True, waitForSettling = False)
17-03-18 06:31:47.184 -07 000000502 INF: Z Motor: Moving to -0.171604 mm, started at -0.165286 mm, distance = -6.32 um
17-03-18 06:31:47.184 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:47.184 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:31:47.184 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:47.184 -07 000000561 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:31:47.194 -07 000000479 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:47.194 -07 000000479 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:47.194 -07 000000479 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:31:47.194 -07 000000479 INF: Y Motor: Moving 1353 steps-32
17-03-18 06:31:47.194 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:47.204 -07 000000502 INF: FPGA: Xmit ZDACW 37487\n [Z Motor]
17-03-18 06:31:47.204 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:31:47.214 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:31:47.214 -07 000000502 INF: FPGA: 'ZDACW 37487' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:31:47.224 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:47.224 -07 000000585 INF: FPGA: Recv ZDACR 37487
17-03-18 06:31:47.234 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:31:47.234 -07 000000502 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 06:31:47.384 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:31:47.384 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:31:47.384 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:47.384 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:31:47.384 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:31:47.384 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:47.384 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:47.394 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:47.394 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:31:47.394 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:47.394 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 06:31:47.394 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:31:47.584 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:31:47.584 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:31:47.624 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:47.624 -07 000000447 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:31:47.634 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:31:47.634 -07 000000479 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:47.634 -07 000000479 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 06:31:47.634 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-18 06:31:48.584 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:48.584 -07 000000591 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:31:48.594 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:48.594 -07 000000479 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:48.614 -07 000000479 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:31:48.614 -07 000000479 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:31:48.614 -07 000000479 INF: Y Motor: Moved to 74.8306 after 1431 ms (table move)
17-03-18 06:31:48.614 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171604 mm (DAC = 37487)
17-03-18 06:31:48.614 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:48.614 -07 000000437 INF: FPGA: Recv ZSGSRD 36003
17-03-18 06:31:48.624 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:31:48.624 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:48.624 -07 000000424 INF: FPGA: Recv ZSGSRD 36008
17-03-18 06:31:48.634 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:48.634 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:48.634 -07 000000626 INF: FPGA: Recv ZSGSRD 35992
17-03-18 06:31:48.644 -07 000000480 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:48.644 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:48.644 -07 000000424 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:31:48.654 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:48.654 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:48.654 -07 000000502 INF: FPGA: Recv ZSGSRD 35993
17-03-18 06:31:48.664 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:48.664 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:48.664 -07 000000447 INF: FPGA: Recv ZSGSRD 36005
17-03-18 06:31:48.674 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:48.674 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:48.674 -07 000000591 INF: FPGA: Recv ZSGSRD 36011
17-03-18 06:31:48.684 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:48.684 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:48.684 -07 000000561 INF: FPGA: Recv ZSGSRD 35996
17-03-18 06:31:48.694 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:48.694 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:48.694 -07 000000591 INF: FPGA: Recv ZSGSRD 36003
17-03-18 06:31:48.704 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:48.704 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:48.704 -07 000000561 INF: FPGA: Recv ZSGSRD 36003
17-03-18 06:31:48.714 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:48.714 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:48.714 -07 000000591 INF: FPGA: Recv ZPIEZORD 31974
17-03-18 06:31:48.724 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:48.724 -07 000000480 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -8.9 V.
17-03-18 06:31:48.724 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36002 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36003 (-170.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35992 (-170.7 uncal um), Max = 36011 (-170.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:31:48.724 -07 000000480 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36002, posNoise = 9, negNoise = 10
17-03-18 06:31:48.724 -07 000000480 INF: Z Motor: After move to -0.171604, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:48.724 -07 000000480 INF: Z Motor: Settle wait time = 1433 ms, measure time = 107 ms (allowed 150 ms), total time = 1540 ms
17-03-18 06:31:48.724 -07 000000480 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:31:48.774 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-18 06:31:48.774 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:31:48.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:48.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:48.774 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:48.774 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:48.774 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:31:48.774 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:48.774 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:31:48.774 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:31:48.784 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:31:48.784 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:31:48.794 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:31:48.794 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:31:48.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:31:48.844 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:31:49.144 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:31:49.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:31:49.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:31:49.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2736656032, 0x0, 559484976) start.
17-03-18 06:31:49.184 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:31:49.184 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:31:49.184 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:31:49.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2736656032, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:31:49.254 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:49.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:31:49.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:31:49.284 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:49.284 -07 000000447 INF: Autofocus start
17-03-18 06:31:49.284 -07 000000447 INF: MeasureProfile start
17-03-18 06:31:49.284 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:49.294 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:31:49.294 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:31:49.304 -07 000000447 INF: MeasureProfile done
17-03-18 06:31:49.304 -07 000000447 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:31:49.304 -07 000000447 INF: Autofocus finished
17-03-18 06:31:49.494 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:31:49.494 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:31:49.494 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171607837538813. ----------
17-03-18 06:31:49.494 -07 000000610 INF: Cycle	150	Tile	19	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:31:49.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36002, sync = True, waitForSettling = True)
17-03-18 06:31:49.504 -07 000000610 INF: Z Motor: Moving to -0.164807 mm, started at -0.171608 mm, distance = 6.80 um
17-03-18 06:31:49.504 -07 000000610 INF: FPGA: Xmit ZDACW 36002\n [Z Motor]
17-03-18 06:31:49.504 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:31:49.514 -07 000000610 INF: FPGA: 'ZDACW 36002' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:31:49.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:49.514 -07 000000591 INF: FPGA: Recv ZDACR 36002
17-03-18 06:31:49.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:49.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:49.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:49.674 -07 000000437 INF: FPGA: Recv ZSGSRD 34945
17-03-18 06:31:49.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:49.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:49.684 -07 000000502 INF: FPGA: Recv ZSGSRD 34946
17-03-18 06:31:49.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:49.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:49.694 -07 000000382 INF: FPGA: Recv ZSGSRD 34947
17-03-18 06:31:49.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:49.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:49.704 -07 000000585 INF: FPGA: Recv ZSGSRD 34946
17-03-18 06:31:49.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:49.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:49.714 -07 000000437 INF: FPGA: Recv ZSGSRD 34944
17-03-18 06:31:49.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:49.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:49.724 -07 000000502 INF: FPGA: Recv ZSGSRD 34947
17-03-18 06:31:49.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:49.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:49.734 -07 000000382 INF: FPGA: Recv ZSGSRD 34943
17-03-18 06:31:49.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:49.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:49.744 -07 000000591 INF: FPGA: Recv ZSGSRD 34945
17-03-18 06:31:49.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:49.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:49.754 -07 000000437 INF: FPGA: Recv ZSGSRD 34945
17-03-18 06:31:49.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:49.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:49.764 -07 000000606 INF: FPGA: Recv ZSGSRD 34946
17-03-18 06:31:49.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:49.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:49.774 -07 000000382 INF: FPGA: Recv ZPIEZORD 30601
17-03-18 06:31:49.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:49.784 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.494 V. Piezo Error = -9.6 V.
17-03-18 06:31:49.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.8 um, Read 10 ADC samples: Avg = 34945 (-164.0 uncal um), Error = 0.9 uncal um, Median = 34946 (-164.0 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 34943 (-163.9 uncal um), Max = 34947 (-164.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:31:49.784 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34945, posNoise = 2, negNoise = 2
17-03-18 06:31:49.784 -07 000000610 INF: Z Motor: After move to -0.164807, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:49.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:31:49.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:49.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:49.784 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:49.784 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:49.784 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:49.784 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:49.784 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:49.784 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:49.784 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:31:49.784 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:49.784 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:31:49.784 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:49.794 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:31:49.794 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:49.794 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:31:49.794 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:49.804 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:31:49.804 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:31:49.804 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:31:49.804 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:31:49.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36179 150\n [Camera]
17-03-18 06:31:50.004 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:31:50.464 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:31:50.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:31:50.464 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:50.464 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:50.464 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:31:50.464 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:31:50.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:31:50.464 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:50.474 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:50.474 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:31:50.654 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36179 846
17-03-18 06:31:50.804 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:50.844 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:31:50.844 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:31:50.844 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:50.854 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:31:50.854 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:31:50.854 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:50.854 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:50.854 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:31:50.854 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:50.864 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:31:51.034 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:31:51.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:31:51.034 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:51.034 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:51.034 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:31:51.034 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:31:51.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:31:51.034 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:51.034 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:51.034 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:31:51.224 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:31:51.224 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:51.224 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36179 150' command took 2 ms to send, 1413 ms to get response, and 1418 ms overall
17-03-18 06:31:51.424 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:31:51.424 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:31:51.424 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:51.424 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:51.424 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:31:51.424 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:31:51.424 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:51.434 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:31:51.434 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:31:51.434 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:31:51.434 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:31:51.474 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 06:31:51.474 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:31:51.524 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:31:51.524 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 06:31:51.524 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:31:51.524 -07 000000437 INF: FPGA: Recv EMCUR 
17-03-18 06:31:51.534 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:31:51.534 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 06:31:51.864 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:31:51.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:31:52.034 -07 000000424 INF: FPGA: Recv EMIN
17-03-18 06:31:52.034 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 495 ms to get response, and 504 ms overall
17-03-18 06:31:52.034 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 06:31:52.154 -07 000000437 INF: FPGA: Recv EMCUR 
17-03-18 06:31:52.154 -07 000000610 INF: FPGA: 'EMCUR 60' command took 113 ms to send, 0 ms to get response, and 115 ms overall
17-03-18 06:31:52.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:31:52.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164817445304972. ------
17-03-18 06:31:52.154 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13925 mm
17-03-18 06:31:52.154 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:52.154 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:31:52.154 -07 000000561 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 06:31:52.154 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 30419, sync = True, waitForSettling = False)
17-03-18 06:31:52.154 -07 000000585 INF: Z Motor: Moving to -0.139249 mm, started at -0.164817 mm, distance = 25.57 um
17-03-18 06:31:52.164 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:52.164 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.978563,
17-03-18 06:31:52.164 -07 000000424 INF: FPGA: Recv YRDPOS 153255
17-03-18 06:31:52.174 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:31:52.174 -07 000000561 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:52.184 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:52.184 -07 000000561 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 06:31:52.184 -07 000000561 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:31:52.184 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:52.194 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 06:31:52.204 -07 000000585 INF: FPGA: Xmit ZDACW 30419\n [Z Motor]
17-03-18 06:31:52.204 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:31:52.214 -07 000000561 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:31:52.214 -07 000000585 INF: FPGA: 'ZDACW 30419' command took 0 ms to send, 0 ms to get response, and 50 ms overall
17-03-18 06:31:52.224 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:52.244 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:52.244 -07 000000437 INF: FPGA: Recv ZDACR 30419
17-03-18 06:31:52.254 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 06:31:52.254 -07 000000585 INF: Z Motor: MoveAbsStepped took 90 ms (did NOT wait for settling yet))
17-03-18 06:31:52.424 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:52.424 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 06:31:53.834 -07 000000382 INF: FPGA: Recv YMVTO 122701 23904
17-03-18 06:31:53.834 -07 000000561 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1658 ms overall
17-03-18 06:31:53.834 -07 000000561 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:31:53.834 -07 000000561 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 06:31:53.834 -07 000000561 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1658 ms, distance = 14.918 mm, average velocity = 8.998 mm/sec
17-03-18 06:31:56.694 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:56.694 -07 000000479 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:31:56.704 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:56.704 -07 000000561 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:56.744 -07 000000561 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:31:56.744 -07 000000561 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 06:31:56.744 -07 000000561 INF: Y Motor: Moved to 59.9097 after 4584 ms
17-03-18 06:31:56.744 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139249 mm (DAC = 30419)
17-03-18 06:31:56.744 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:56.744 -07 000000480 INF: FPGA: Recv ZSGSRD 30966
17-03-18 06:31:56.754 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:31:56.754 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:56.754 -07 000000447 INF: FPGA: Recv ZSGSRD 30962
17-03-18 06:31:56.764 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:56.764 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:56.764 -07 000000437 INF: FPGA: Recv ZSGSRD 30965
17-03-18 06:31:56.774 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:56.774 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:56.774 -07 000000382 INF: FPGA: Recv ZSGSRD 30962
17-03-18 06:31:56.784 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:56.784 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:56.784 -07 000000479 INF: FPGA: Recv ZSGSRD 30963
17-03-18 06:31:56.794 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:56.794 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:56.794 -07 000000592 INF: FPGA: Recv ZSGSRD 30972
17-03-18 06:31:56.804 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:56.804 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:56.804 -07 000000561 INF: FPGA: Recv ZSGSRD 30968
17-03-18 06:31:56.814 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:56.814 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:56.814 -07 000000606 INF: FPGA: Recv ZSGSRD 30965
17-03-18 06:31:56.824 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:56.824 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:56.824 -07 000000437 INF: FPGA: Recv ZSGSRD 30967
17-03-18 06:31:56.834 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:56.834 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:56.834 -07 000000382 INF: FPGA: Recv ZSGSRD 30970
17-03-18 06:31:56.844 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:56.844 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:56.844 -07 000000437 INF: FPGA: Recv ZPIEZORD 26418
17-03-18 06:31:56.854 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:56.854 -07 000000438 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.642 V. Piezo Error = -10.0 V.
17-03-18 06:31:56.854 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30966 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30966 (-138.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30962 (-138.4 uncal um), Max = 30972 (-138.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:31:56.854 -07 000000438 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30966, posNoise = 6, negNoise = 4
17-03-18 06:31:56.854 -07 000000438 INF: Z Motor: After move to -0.139249, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:56.854 -07 000000438 INF: Z Motor: Settle wait time = 4587 ms, measure time = 103 ms (allowed 150 ms), total time = 4690 ms
17-03-18 06:31:56.854 -07 000000438 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:31:56.864 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:31:56.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:31:56.904 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4744 ms
17-03-18 06:31:56.904 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:31:56.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:56.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:56.904 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:56.904 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:56.904 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:31:56.904 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:56.914 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:56.914 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:31:56.934 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 06:31:56.934 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:31:56.934 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:31:56.934 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:31:56.954 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:31:56.954 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 06:31:56.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:31:56.994 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:31:57.294 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:31:57.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:31:57.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:31:57.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:31:57.334 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:31:57.334 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 06:31:57.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:31:57.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:31:57.414 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:57.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:31:57.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:31:57.434 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:57.434 -07 000000561 INF: Image SNR check: start
17-03-18 06:31:57.434 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:57.444 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:31:57.444 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:31:57.444 -07 000000561 INF: Image SNR check: pass  [peak (Max-Min)=115.00]
17-03-18 06:31:57.444 -07 000000561 INF: Autofocus start
17-03-18 06:31:57.444 -07 000000561 INF: MeasureProfile start
17-03-18 06:31:57.464 -07 000000561 INF: MeasureProfile done
17-03-18 06:31:57.464 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:31:57.464 -07 000000561 INF: Autofocus finished
17-03-18 06:31:57.594 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.015368,
17-03-18 06:31:57.644 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:31:57.644 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:31:57.644 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.139255505192905. ----------
17-03-18 06:31:57.644 -07 000000610 INF: Cycle	150	Tile	1	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:31:57.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28927, sync = True, waitForSettling = True)
17-03-18 06:31:57.654 -07 000000610 INF: Z Motor: Moving to -0.132419 mm, started at -0.139256 mm, distance = 6.84 um
17-03-18 06:31:57.654 -07 000000610 INF: FPGA: Xmit ZDACW 28927\n [Z Motor]
17-03-18 06:31:57.654 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:31:57.664 -07 000000610 INF: FPGA: 'ZDACW 28927' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:57.664 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:57.664 -07 000000592 INF: FPGA: Recv ZDACR 28927
17-03-18 06:31:57.674 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:57.674 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:31:57.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:57.824 -07 000000585 INF: FPGA: Recv ZSGSRD 29897
17-03-18 06:31:57.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:57.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:57.834 -07 000000447 INF: FPGA: Recv ZSGSRD 29909
17-03-18 06:31:57.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:57.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:57.844 -07 000000437 INF: FPGA: Recv ZSGSRD 29905
17-03-18 06:31:57.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:57.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:57.854 -07 000000626 INF: FPGA: Recv ZSGSRD 29899
17-03-18 06:31:57.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:57.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:57.864 -07 000000585 INF: FPGA: Recv ZSGSRD 29907
17-03-18 06:31:57.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:57.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:57.874 -07 000000437 INF: FPGA: Recv ZSGSRD 29899
17-03-18 06:31:57.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:57.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:57.884 -07 000000424 INF: FPGA: Recv ZSGSRD 29906
17-03-18 06:31:57.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:57.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:57.904 -07 000000438 INF: FPGA: Recv ZSGSRD 29901
17-03-18 06:31:57.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:31:57.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:57.934 -07 000000502 INF: FPGA: Recv ZSGSRD 29899
17-03-18 06:31:57.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:31:57.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:31:57.944 -07 000000626 INF: FPGA: Recv ZSGSRD 29903
17-03-18 06:31:57.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:31:57.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:31:57.964 -07 000000502 INF: FPGA: Recv ZPIEZORD 25296
17-03-18 06:31:57.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:31:57.974 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -10.1 V.
17-03-18 06:31:57.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29902 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29902 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29897 (-131.6 uncal um), Max = 29909 (-131.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:31:57.974 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29902, posNoise = 7, negNoise = 5
17-03-18 06:31:57.974 -07 000000610 INF: Z Motor: After move to -0.132419, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:31:57.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 320 ms)
17-03-18 06:31:57.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:31:57.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:31:57.974 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:31:57.974 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:31:57.974 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:31:57.974 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:31:57.974 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:31:57.974 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:31:57.974 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:31:57.974 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:31:57.974 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:31:57.974 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:31:57.984 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:31:57.984 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:31:57.994 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 06:31:57.994 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:31:58.004 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 06:31:58.004 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:31:58.004 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:31:58.004 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:31:58.014 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:31:58.014 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 36 ms.
17-03-18 06:31:58.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 29104 150\n [Camera]
17-03-18 06:31:58.214 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:31:58.674 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:31:58.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:31:58.674 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:58.674 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:31:58.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:31:58.674 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:58.684 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:58.684 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:31:58.684 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:58.684 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:31:58.864 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29104 846
17-03-18 06:31:59.014 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:31:59.064 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:31:59.064 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:31:59.064 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:59.064 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:31:59.064 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:31:59.064 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:59.064 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:59.064 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:31:59.064 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:31:59.074 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:31:59.244 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:31:59.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:31:59.244 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:31:59.244 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:31:59.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:31:59.244 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:31:59.364 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:31:59.364 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:31:59.364 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:31:59.364 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 06:31:59.434 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:31:59.434 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:31:59.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 29104 150' command took 2 ms to send, 1411 ms to get response, and 1417 ms overall
17-03-18 06:31:59.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:31:59.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.132420143474071. ------
17-03-18 06:31:59.434 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:31:59.434 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13879 mm
17-03-18 06:31:59.434 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:31:59.434 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:31:59.434 -07 000000561 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 06:31:59.434 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30318, sync = True, waitForSettling = False)
17-03-18 06:31:59.434 -07 000000502 INF: Z Motor: Moving to -0.138787 mm, started at -0.132420 mm, distance = -6.37 um
17-03-18 06:31:59.434 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:31:59.444 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:31:59.444 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:59.444 -07 000000606 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:31:59.454 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:31:59.454 -07 000000561 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:59.454 -07 000000561 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:31:59.454 -07 000000561 INF: Y Motor: Moving 1333 steps0
17-03-18 06:31:59.454 -07 000000502 INF: FPGA: Xmit ZDACW 30318\n [Z Motor]
17-03-18 06:31:59.454 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:31:59.464 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:31:59.464 -07 000000502 INF: FPGA: 'ZDACW 30318' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:31:59.474 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:31:59.484 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:31:59.484 -07 000000479 INF: FPGA: Recv ZDACR 30318
17-03-18 06:31:59.494 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:31:59.494 -07 000000502 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 06:31:59.664 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:31:59.664 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:31:59.764 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:31:59.764 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:31:59.764 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:59.764 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:31:59.764 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:31:59.764 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:31:59.764 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:59.764 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:31:59.774 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 06:31:59.774 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 06:31:59.844 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:31:59.844 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:31:59.894 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:31:59.894 -07 000000437 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:31:59.904 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:31:59.904 -07 000000561 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:31:59.904 -07 000000561 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:31:59.904 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.098 mm/sec
17-03-18 06:32:00.854 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:00.854 -07 000000437 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:32:00.864 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:00.864 -07 000000561 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:00.894 -07 000000561 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:00.894 -07 000000561 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:32:00.894 -07 000000561 INF: Y Motor: Moved to 60.7319 after 1456 ms (table move)
17-03-18 06:32:00.894 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138787 mm (DAC = 30318)
17-03-18 06:32:00.894 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:00.904 -07 000000424 INF: FPGA: Recv ZSGSRD 30893
17-03-18 06:32:00.904 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:32:00.904 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:00.904 -07 000000561 INF: FPGA: Recv ZSGSRD 30903
17-03-18 06:32:00.914 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:32:00.914 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:00.914 -07 000000480 INF: FPGA: Recv ZSGSRD 30891
17-03-18 06:32:00.924 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:00.924 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:00.924 -07 000000437 INF: FPGA: Recv ZSGSRD 30887
17-03-18 06:32:00.934 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:00.934 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:00.934 -07 000000592 INF: FPGA: Recv ZSGSRD 30891
17-03-18 06:32:00.944 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:00.944 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:00.944 -07 000000585 INF: FPGA: Recv ZSGSRD 30893
17-03-18 06:32:00.954 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:00.954 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:00.954 -07 000000592 INF: FPGA: Recv ZSGSRD 30907
17-03-18 06:32:00.964 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:00.964 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:00.964 -07 000000626 INF: FPGA: Recv ZSGSRD 30895
17-03-18 06:32:00.974 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:00.974 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:00.974 -07 000000479 INF: FPGA: Recv ZSGSRD 30897
17-03-18 06:32:00.984 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:00.984 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:00.984 -07 000000626 INF: FPGA: Recv ZSGSRD 30899
17-03-18 06:32:00.994 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:00.994 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:00.994 -07 000000592 INF: FPGA: Recv ZPIEZORD 26588
17-03-18 06:32:01.004 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:01.004 -07 000000382 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.626 V. Piezo Error = -9.5 V.
17-03-18 06:32:01.004 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30896 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30894 (-138.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30887 (-137.9 uncal um), Max = 30907 (-138.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:32:01.004 -07 000000382 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30896, posNoise = 11, negNoise = 9
17-03-18 06:32:01.004 -07 000000382 INF: Z Motor: After move to -0.138787, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:01.004 -07 000000382 INF: Z Motor: Settle wait time = 1459 ms, measure time = 102 ms (allowed 150 ms), total time = 1561 ms
17-03-18 06:32:01.004 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:01.054 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 06:32:01.054 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:01.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:01.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:01.054 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:01.054 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:01.054 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:01.054 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:01.054 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:01.054 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:01.064 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:01.064 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:01.074 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:32:01.074 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:32:01.074 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:01.124 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:01.414 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:01.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:01.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:01.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:32:01.454 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:01.464 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:01.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:32:01.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:32:01.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:01.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:32:01.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:32:01.564 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:01.564 -07 000000438 INF: Autofocus start
17-03-18 06:32:01.564 -07 000000438 INF: MeasureProfile start
17-03-18 06:32:01.564 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:01.574 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:01.574 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:01.574 -07 000000438 INF: MeasureProfile done
17-03-18 06:32:01.574 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:32:01.574 -07 000000438 INF: Autofocus finished
17-03-18 06:32:01.774 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:01.774 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:32:01.774 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.138805810342982. ----------
17-03-18 06:32:01.774 -07 000000610 INF: Cycle	150	Tile	2	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:01.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28826, sync = True, waitForSettling = True)
17-03-18 06:32:01.784 -07 000000610 INF: Z Motor: Moving to -0.131957 mm, started at -0.138806 mm, distance = 6.85 um
17-03-18 06:32:01.784 -07 000000610 INF: FPGA: Xmit ZDACW 28826\n [Z Motor]
17-03-18 06:32:01.784 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:32:01.794 -07 000000610 INF: FPGA: 'ZDACW 28826' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:01.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:01.794 -07 000000626 INF: FPGA: Recv ZDACR 28826
17-03-18 06:32:01.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:01.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:01.864 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:32:01.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:32:01.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:01.954 -07 000000382 INF: FPGA: Recv ZSGSRD 29833
17-03-18 06:32:01.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:01.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:01.964 -07 000000591 INF: FPGA: Recv ZSGSRD 29830
17-03-18 06:32:01.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:01.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:01.974 -07 000000502 INF: FPGA: Recv ZSGSRD 29834
17-03-18 06:32:01.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:01.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:01.984 -07 000000480 INF: FPGA: Recv ZSGSRD 29832
17-03-18 06:32:01.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:01.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:01.994 -07 000000479 INF: FPGA: Recv ZSGSRD 29836
17-03-18 06:32:02.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:02.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:02.004 -07 000000382 INF: FPGA: Recv ZSGSRD 29835
17-03-18 06:32:02.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:02.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:02.014 -07 000000561 INF: FPGA: Recv ZSGSRD 29822
17-03-18 06:32:02.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:02.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:02.024 -07 000000438 INF: FPGA: Recv ZSGSRD 29834
17-03-18 06:32:02.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:02.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:02.034 -07 000000585 INF: FPGA: Recv ZSGSRD 29831
17-03-18 06:32:02.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:02.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:02.044 -07 000000382 INF: FPGA: Recv ZSGSRD 29834
17-03-18 06:32:02.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:02.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:02.054 -07 000000591 INF: FPGA: Recv ZPIEZORD 25201
17-03-18 06:32:02.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:02.064 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -10.1 V.
17-03-18 06:32:02.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29832 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29834 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29822 (-131.1 uncal um), Max = 29836 (-131.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:32:02.064 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29832, posNoise = 4, negNoise = 10
17-03-18 06:32:02.064 -07 000000610 INF: Z Motor: After move to -0.131957, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:02.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:32:02.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:02.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:02.064 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:02.064 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:02.064 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:02.064 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:02.064 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:02.064 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:02.064 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:32:02.064 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:02.064 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:02.064 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:02.074 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:32:02.074 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:02.074 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:32:02.074 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:02.084 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:32:02.084 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:32:02.084 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:32:02.084 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:32:02.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 29003 150\n [Camera]
17-03-18 06:32:02.294 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:32:02.754 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:02.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:02.754 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:02.754 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:02.754 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2554546280, 0x0, 391868352) start.
17-03-18 06:32:02.754 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:02.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:02.754 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:02.764 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:02.764 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 06:32:02.944 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29003 846
17-03-18 06:32:02.954 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.03576,
17-03-18 06:32:03.094 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:32:03.154 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2554546280, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:32:03.154 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:32:03.154 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:03.154 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:03.154 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:32:03.154 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:32:03.154 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:32:03.154 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:03.154 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:03.164 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:32:03.314 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:03.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:03.314 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:03.314 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:03.314 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:32:03.324 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:03.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:03.324 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:03.334 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:03.334 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) start.
17-03-18 06:32:03.504 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:32:03.504 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:03.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 29003 150' command took 2 ms to send, 1408 ms to get response, and 1418 ms overall
17-03-18 06:32:03.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:03.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.131970448624148. ------
17-03-18 06:32:03.514 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:03.514 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13882 mm
17-03-18 06:32:03.514 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:03.514 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:32:03.514 -07 000000424 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 06:32:03.514 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30324, sync = True, waitForSettling = False)
17-03-18 06:32:03.514 -07 000000591 INF: Z Motor: Moving to -0.138814 mm, started at -0.131970 mm, distance = -6.84 um
17-03-18 06:32:03.514 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:03.524 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:03.524 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:03.524 -07 000000382 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:32:03.534 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:32:03.534 -07 000000591 INF: FPGA: Xmit ZDACW 30324\n [Z Motor]
17-03-18 06:32:03.534 -07 000000424 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:03.534 -07 000000424 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:03.534 -07 000000424 INF: Y Motor: Moving 1345 steps-23
17-03-18 06:32:03.534 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:32:03.544 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:03.544 -07 000000591 INF: FPGA: 'ZDACW 30324' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:32:03.554 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:03.564 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:03.564 -07 000000592 INF: FPGA: Recv ZDACR 30324
17-03-18 06:32:03.574 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:32:03.574 -07 000000591 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:32:03.724 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 409 ms.
17-03-18 06:32:03.724 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:32:03.724 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:03.734 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:32:03.734 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:32:03.734 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:03.734 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:03.734 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 06:32:03.734 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:03.744 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:32:03.744 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:03.744 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:32:03.924 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 06:32:03.924 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:32:03.974 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:03.984 -07 000000502 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:32:03.994 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:03.994 -07 000000424 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:03.994 -07 000000424 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:32:03.994 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 06:32:04.944 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:04.944 -07 000000502 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:32:04.954 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:04.954 -07 000000424 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:04.984 -07 000000424 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:04.984 -07 000000424 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:32:04.984 -07 000000424 INF: Y Motor: Moved to 61.5625 after 1466 ms (table move)
17-03-18 06:32:04.984 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138814 mm (DAC = 30324)
17-03-18 06:32:04.984 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:04.994 -07 000000626 INF: FPGA: Recv ZSGSRD 30893
17-03-18 06:32:04.994 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:32:04.994 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:04.994 -07 000000591 INF: FPGA: Recv ZSGSRD 30908
17-03-18 06:32:05.004 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:05.004 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:05.004 -07 000000447 INF: FPGA: Recv ZSGSRD 30890
17-03-18 06:32:05.014 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:05.014 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:05.014 -07 000000592 INF: FPGA: Recv ZSGSRD 30899
17-03-18 06:32:05.024 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:05.024 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:05.024 -07 000000447 INF: FPGA: Recv ZSGSRD 30902
17-03-18 06:32:05.034 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:05.034 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:05.034 -07 000000591 INF: FPGA: Recv ZSGSRD 30891
17-03-18 06:32:05.044 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:05.044 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:05.044 -07 000000606 INF: FPGA: Recv ZSGSRD 30907
17-03-18 06:32:05.054 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:05.054 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:05.054 -07 000000438 INF: FPGA: Recv ZSGSRD 30899
17-03-18 06:32:05.064 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:05.064 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:05.064 -07 000000382 INF: FPGA: Recv ZSGSRD 30906
17-03-18 06:32:05.074 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:05.074 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:05.074 -07 000000437 INF: FPGA: Recv ZSGSRD 30903
17-03-18 06:32:05.084 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:05.084 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:05.084 -07 000000592 INF: FPGA: Recv ZPIEZORD 26675
17-03-18 06:32:05.094 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:05.094 -07 000000479 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -9.3 V.
17-03-18 06:32:05.094 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30900 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30900 (-138.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30890 (-138.0 uncal um), Max = 30908 (-138.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:32:05.094 -07 000000479 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30900, posNoise = 8, negNoise = 10
17-03-18 06:32:05.094 -07 000000479 INF: Z Motor: After move to -0.138814, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:05.094 -07 000000479 INF: Z Motor: Settle wait time = 1470 ms, measure time = 104 ms (allowed 150 ms), total time = 1574 ms
17-03-18 06:32:05.094 -07 000000479 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:05.144 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:32:05.144 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:05.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:05.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:05.144 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:05.144 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:05.144 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:05.144 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:05.144 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:05.144 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:05.154 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:05.154 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:05.154 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:32:05.154 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:32:05.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:05.204 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:05.504 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:05.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:05.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:05.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2606843608, 0x0, 559484976) start.
17-03-18 06:32:05.544 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:05.544 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:05.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:32:05.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2606843608, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:32:05.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:05.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:32:05.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:32:05.644 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:05.644 -07 000000591 INF: Autofocus start
17-03-18 06:32:05.644 -07 000000591 INF: MeasureProfile start
17-03-18 06:32:05.644 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:05.654 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:05.654 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:05.654 -07 000000591 INF: MeasureProfile done
17-03-18 06:32:05.654 -07 000000591 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:32:05.654 -07 000000591 INF: Autofocus finished
17-03-18 06:32:05.854 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:05.854 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:32:05.854 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.138831507191549. ----------
17-03-18 06:32:05.854 -07 000000610 INF: Cycle	150	Tile	3	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:05.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28849, sync = True, waitForSettling = True)
17-03-18 06:32:05.864 -07 000000610 INF: Z Motor: Moving to -0.132062 mm, started at -0.138832 mm, distance = 6.77 um
17-03-18 06:32:05.864 -07 000000610 INF: FPGA: Xmit ZDACW 28849\n [Z Motor]
17-03-18 06:32:05.864 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:32:05.874 -07 000000610 INF: FPGA: 'ZDACW 28849' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:32:05.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:05.874 -07 000000438 INF: FPGA: Recv ZDACR 28849
17-03-18 06:32:05.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:05.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:06.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:06.034 -07 000000382 INF: FPGA: Recv ZSGSRD 29843
17-03-18 06:32:06.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:06.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:06.044 -07 000000424 INF: FPGA: Recv ZSGSRD 29852
17-03-18 06:32:06.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:06.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:06.054 -07 000000626 INF: FPGA: Recv ZSGSRD 29846
17-03-18 06:32:06.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:06.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:06.064 -07 000000438 INF: FPGA: Recv ZSGSRD 29842
17-03-18 06:32:06.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:06.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:06.074 -07 000000447 INF: FPGA: Recv ZSGSRD 29855
17-03-18 06:32:06.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:06.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:06.084 -07 000000424 INF: FPGA: Recv ZSGSRD 29846
17-03-18 06:32:06.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:06.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:06.094 -07 000000591 INF: FPGA: Recv ZSGSRD 29846
17-03-18 06:32:06.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:06.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:06.104 -07 000000438 INF: FPGA: Recv ZSGSRD 29852
17-03-18 06:32:06.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:06.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:06.114 -07 000000382 INF: FPGA: Recv ZSGSRD 29844
17-03-18 06:32:06.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:06.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:06.124 -07 000000424 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:32:06.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:06.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:06.134 -07 000000592 INF: FPGA: Recv ZPIEZORD 25270
17-03-18 06:32:06.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:06.144 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.0 V.
17-03-18 06:32:06.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29848 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29846 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29842 (-131.3 uncal um), Max = 29855 (-131.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:32:06.144 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29848, posNoise = 7, negNoise = 6
17-03-18 06:32:06.144 -07 000000610 INF: Z Motor: After move to -0.132062, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:06.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:32:06.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:06.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:06.144 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:06.144 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:06.144 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:06.144 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:06.144 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:06.144 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:06.144 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:32:06.144 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:06.144 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:32:06.144 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:06.154 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:06.154 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:06.154 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 6 ms.
17-03-18 06:32:06.154 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:06.174 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 19 ms.
17-03-18 06:32:06.174 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 06:32:06.174 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 06:32:06.174 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 25 ms.
17-03-18 06:32:06.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 29025 150\n [Camera]
17-03-18 06:32:06.374 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:32:06.834 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:06.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:06.834 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:06.834 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:06.844 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:32:06.844 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:06.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:06.844 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:06.844 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:06.844 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:32:06.864 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:32:06.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:32:07.024 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29025 846
17-03-18 06:32:07.174 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:32:07.224 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 06:32:07.234 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:32:07.234 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:07.234 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:07.234 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:32:07.234 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:32:07.234 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:07.234 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:07.234 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:32:07.244 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:32:07.404 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:07.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:07.404 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:07.404 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:07.404 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:32:07.404 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:07.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:07.404 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:07.404 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:07.404 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:32:07.594 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:32:07.594 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:07.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 29025 150' command took 2 ms to send, 1414 ms to get response, and 1418 ms overall
17-03-18 06:32:07.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:07.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.132073236018416. ------
17-03-18 06:32:07.604 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:07.604 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13851 mm
17-03-18 06:32:07.604 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:07.604 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:07.604 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30258, sync = True, waitForSettling = False)
17-03-18 06:32:07.604 -07 000000438 INF: Z Motor: Moving to -0.138512 mm, started at -0.132073 mm, distance = -6.44 um
17-03-18 06:32:07.604 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:32:07.604 -07 000000502 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 06:32:07.614 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:07.614 -07 000000438 INF: FPGA: Xmit ZDACW 30258\n [Z Motor]
17-03-18 06:32:07.614 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:32:07.624 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:07.624 -07 000000438 INF: FPGA: 'ZDACW 30258' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:32:07.624 -07 000000626 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:32:07.634 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:07.634 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:32:07.634 -07 000000502 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:07.634 -07 000000502 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:07.634 -07 000000502 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:32:07.644 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:07.644 -07 000000606 INF: FPGA: Recv ZDACR 30258
17-03-18 06:32:07.654 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:07.654 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:32:07.654 -07 000000438 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 06:32:07.804 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:32:07.804 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:32:07.804 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:07.804 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:32:07.804 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:32:07.804 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:07.814 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:07.814 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:32:07.814 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:32:07.814 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:32:07.834 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:07.834 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:32:08.024 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:32:08.024 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:32:08.084 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:08.084 -07 000000447 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:32:08.094 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:08.094 -07 000000502 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:08.094 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:32:08.094 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 06:32:08.324 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.012614,
17-03-18 06:32:09.044 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:09.044 -07 000000561 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:32:09.054 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:09.054 -07 000000502 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:09.084 -07 000000502 INF: Y Motor: After move to 62.402607, error = -0.008564, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:09.084 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:32:09.084 -07 000000502 INF: Y Motor: Moved to 62.3940 after 1479 ms (table move)
17-03-18 06:32:09.084 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138512 mm (DAC = 30258)
17-03-18 06:32:09.084 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:09.094 -07 000000382 INF: FPGA: Recv ZSGSRD 30853
17-03-18 06:32:09.094 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:32:09.094 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:09.094 -07 000000592 INF: FPGA: Recv ZSGSRD 30848
17-03-18 06:32:09.104 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:09.104 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:09.104 -07 000000502 INF: FPGA: Recv ZSGSRD 30856
17-03-18 06:32:09.114 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:09.114 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:09.114 -07 000000479 INF: FPGA: Recv ZSGSRD 30845
17-03-18 06:32:09.124 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:09.124 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:09.124 -07 000000480 INF: FPGA: Recv ZSGSRD 30854
17-03-18 06:32:09.134 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:09.134 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:09.134 -07 000000592 INF: FPGA: Recv ZSGSRD 30857
17-03-18 06:32:09.144 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:09.144 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:09.144 -07 000000606 INF: FPGA: Recv ZSGSRD 30852
17-03-18 06:32:09.154 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:09.154 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:09.154 -07 000000438 INF: FPGA: Recv ZSGSRD 30860
17-03-18 06:32:09.164 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:09.164 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:09.164 -07 000000447 INF: FPGA: Recv ZSGSRD 30845
17-03-18 06:32:09.174 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:09.174 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:09.174 -07 000000626 INF: FPGA: Recv ZSGSRD 30854
17-03-18 06:32:09.184 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:09.184 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:09.184 -07 000000561 INF: FPGA: Recv ZPIEZORD 26643
17-03-18 06:32:09.194 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:09.194 -07 000000437 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -9.3 V.
17-03-18 06:32:09.194 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30852 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30854 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30845 (-137.7 uncal um), Max = 30860 (-137.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:32:09.194 -07 000000437 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30852, posNoise = 8, negNoise = 7
17-03-18 06:32:09.194 -07 000000437 INF: Z Motor: After move to -0.138512, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:09.194 -07 000000437 INF: Z Motor: Settle wait time = 1483 ms, measure time = 103 ms (allowed 150 ms), total time = 1586 ms
17-03-18 06:32:09.194 -07 000000437 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:09.244 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 06:32:09.244 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:09.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:09.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:09.244 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:09.244 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:09.244 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:09.244 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:09.244 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:09.244 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:09.254 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:09.254 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:09.254 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:32:09.254 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:32:09.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:09.304 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:09.604 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:09.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:09.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:09.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-18 06:32:09.644 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:09.644 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:09.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:32:09.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:32:09.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:09.724 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:32:09.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:32:09.744 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:09.744 -07 000000626 INF: Autofocus start
17-03-18 06:32:09.744 -07 000000626 INF: MeasureProfile start
17-03-18 06:32:09.744 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:09.754 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:09.754 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:09.764 -07 000000626 INF: MeasureProfile done
17-03-18 06:32:09.764 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:32:09.764 -07 000000626 INF: Autofocus finished
17-03-18 06:32:09.954 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:09.954 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:32:09.954 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39404296875, Z-position -0.138523145008744. ----------
17-03-18 06:32:09.954 -07 000000610 INF: Cycle	150	Tile	4	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:09.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28766, sync = True, waitForSettling = True)
17-03-18 06:32:09.964 -07 000000610 INF: Z Motor: Moving to -0.131682 mm, started at -0.138523 mm, distance = 6.84 um
17-03-18 06:32:09.964 -07 000000610 INF: FPGA: Xmit ZDACW 28766\n [Z Motor]
17-03-18 06:32:09.964 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:32:09.974 -07 000000610 INF: FPGA: 'ZDACW 28766' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:32:09.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:09.974 -07 000000382 INF: FPGA: Recv ZDACR 28766
17-03-18 06:32:09.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:09.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:10.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:10.134 -07 000000606 INF: FPGA: Recv ZSGSRD 29786
17-03-18 06:32:10.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:10.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:10.144 -07 000000480 INF: FPGA: Recv ZSGSRD 29796
17-03-18 06:32:10.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:10.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:10.154 -07 000000382 INF: FPGA: Recv ZSGSRD 29786
17-03-18 06:32:10.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:10.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:10.164 -07 000000626 INF: FPGA: Recv ZSGSRD 29786
17-03-18 06:32:10.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:10.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:10.174 -07 000000591 INF: FPGA: Recv ZSGSRD 29793
17-03-18 06:32:10.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:10.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:10.184 -07 000000592 INF: FPGA: Recv ZSGSRD 29782
17-03-18 06:32:10.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:10.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:10.194 -07 000000585 INF: FPGA: Recv ZSGSRD 29796
17-03-18 06:32:10.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:10.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:10.204 -07 000000437 INF: FPGA: Recv ZSGSRD 29785
17-03-18 06:32:10.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:10.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:10.214 -07 000000591 INF: FPGA: Recv ZSGSRD 29789
17-03-18 06:32:10.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:10.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:10.224 -07 000000561 INF: FPGA: Recv ZSGSRD 29795
17-03-18 06:32:10.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:10.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:10.234 -07 000000502 INF: FPGA: Recv ZPIEZORD 25246
17-03-18 06:32:10.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:10.244 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -10.0 V.
17-03-18 06:32:10.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29789 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29788 (-130.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29782 (-130.9 uncal um), Max = 29796 (-131.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:32:10.244 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29789, posNoise = 7, negNoise = 7
17-03-18 06:32:10.244 -07 000000610 INF: Z Motor: After move to -0.131682, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:10.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-18 06:32:10.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:10.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:10.254 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:10.264 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:10.264 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:10.264 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:10.264 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:10.264 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:10.264 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:10.264 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:10.264 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:32:10.264 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:10.274 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:32:10.274 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:10.274 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:32:10.274 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:10.284 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:32:10.284 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:32:10.284 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:32:10.284 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:32:10.284 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28942 150\n [Camera]
17-03-18 06:32:10.484 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:32:10.944 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:10.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:10.944 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:10.944 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:10.944 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:32:10.944 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:10.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:10.954 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:10.954 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:10.954 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:32:11.144 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28942 846
17-03-18 06:32:11.284 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:32:11.344 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:32:11.344 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:32:11.344 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:11.344 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:32:11.344 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:32:11.344 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:11.344 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:11.344 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:32:11.354 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:11.354 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:32:11.514 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:11.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:11.514 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:11.514 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:11.514 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:32:11.514 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:11.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:11.514 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:11.514 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:11.514 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:32:11.704 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:32:11.704 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:11.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28942 150' command took 2 ms to send, 1414 ms to get response, and 1418 ms overall
17-03-18 06:32:11.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:11.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39404296875, Z-Position -0.131694207502052. ------
17-03-18 06:32:11.704 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:11.704 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13818 mm
17-03-18 06:32:11.704 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:11.714 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:11.714 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:32:11.714 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:32:11.714 -07 000000382 INF: Y Motor: Moving to 63.2326 mm, started at 62.3940 mm, delta = 0.8386 mm
17-03-18 06:32:11.714 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:11.714 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 30185, sync = True, waitForSettling = False)
17-03-18 06:32:11.714 -07 000000479 INF: Z Motor: Moving to -0.138178 mm, started at -0.131694 mm, distance = -6.48 um
17-03-18 06:32:11.724 -07 000000479 INF: FPGA: Xmit ZDACW 30185\n [Z Motor]
17-03-18 06:32:11.724 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:32:11.734 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:11.734 -07 000000479 INF: FPGA: 'ZDACW 30185' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:32:11.734 -07 000000438 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:32:11.744 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:32:11.744 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:11.744 -07 000000382 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:11.744 -07 000000561 INF: FPGA: Recv ZDACR 30185
17-03-18 06:32:11.744 -07 000000382 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:11.744 -07 000000382 INF: Y Motor: Moving 1341 steps-18
17-03-18 06:32:11.754 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:32:11.754 -07 000000479 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 06:32:11.754 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:11.864 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:32:11.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:32:11.914 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:11.914 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:32:11.914 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:32:11.914 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:32:11.914 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:11.914 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:32:11.914 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:32:11.914 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:11.924 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:11.924 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:32:11.924 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:32:11.924 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:32:12.124 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 06:32:12.124 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 06:32:12.184 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:12.184 -07 000000438 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:32:12.194 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:12.194 -07 000000382 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:12.194 -07 000000382 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:32:12.194 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.184 mm/sec
17-03-18 06:32:13.144 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:13.144 -07 000000591 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:32:13.154 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:13.154 -07 000000382 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:13.184 -07 000000382 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:13.184 -07 000000382 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:32:13.184 -07 000000382 INF: Y Motor: Moved to 63.2227 after 1471 ms (table move)
17-03-18 06:32:13.184 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138178 mm (DAC = 30185)
17-03-18 06:32:13.184 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:13.194 -07 000000424 INF: FPGA: Recv ZSGSRD 30801
17-03-18 06:32:13.194 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:32:13.194 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:13.194 -07 000000479 INF: FPGA: Recv ZSGSRD 30808
17-03-18 06:32:13.204 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:13.204 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:13.204 -07 000000479 INF: FPGA: Recv ZSGSRD 30796
17-03-18 06:32:13.214 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:13.214 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:13.214 -07 000000626 INF: FPGA: Recv ZSGSRD 30795
17-03-18 06:32:13.224 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:13.224 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:13.224 -07 000000626 INF: FPGA: Recv ZSGSRD 30799
17-03-18 06:32:13.234 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:13.234 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:13.234 -07 000000424 INF: FPGA: Recv ZSGSRD 30795
17-03-18 06:32:13.244 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:13.244 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:13.244 -07 000000424 INF: FPGA: Recv ZSGSRD 30798
17-03-18 06:32:13.254 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:13.254 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:13.254 -07 000000479 INF: FPGA: Recv ZSGSRD 30800
17-03-18 06:32:13.264 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:13.264 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:13.264 -07 000000479 INF: FPGA: Recv ZSGSRD 30803
17-03-18 06:32:13.274 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:13.274 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:13.274 -07 000000479 INF: FPGA: Recv ZSGSRD 30805
17-03-18 06:32:13.284 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:13.284 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:13.284 -07 000000479 INF: FPGA: Recv ZPIEZORD 26611
17-03-18 06:32:13.294 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:13.294 -07 000000437 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.606 V. Piezo Error = -9.2 V.
17-03-18 06:32:13.294 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30800 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30800 (-137.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30795 (-137.4 uncal um), Max = 30808 (-137.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:32:13.294 -07 000000437 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30800, posNoise = 8, negNoise = 5
17-03-18 06:32:13.294 -07 000000437 INF: Z Motor: After move to -0.138178, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:13.294 -07 000000437 INF: Z Motor: Settle wait time = 1471 ms, measure time = 103 ms (allowed 150 ms), total time = 1574 ms
17-03-18 06:32:13.294 -07 000000437 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:13.344 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 06:32:13.344 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:13.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:13.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:13.344 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:13.344 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:13.344 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:13.344 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:13.344 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:13.344 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:13.354 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:13.354 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:13.354 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:32:13.354 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:32:13.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:13.404 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:13.694 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.018051,
17-03-18 06:32:13.704 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:13.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:13.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:13.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2807500560, 0x0, 559484976) start.
17-03-18 06:32:13.744 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:13.744 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:13.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:32:13.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2807500560, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:32:13.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:13.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:32:13.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:32:13.844 -07 000000606 INF: Autofocus start
17-03-18 06:32:13.844 -07 000000606 INF: MeasureProfile start
17-03-18 06:32:13.844 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:13.844 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:13.854 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:13.854 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:13.854 -07 000000606 INF: MeasureProfile done
17-03-18 06:32:13.854 -07 000000606 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:32:13.854 -07 000000606 INF: Autofocus finished
17-03-18 06:32:14.054 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:14.054 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:32:14.054 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.138189085977372. ----------
17-03-18 06:32:14.054 -07 000000610 INF: Cycle	150	Tile	5	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:14.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28709, sync = True, waitForSettling = True)
17-03-18 06:32:14.064 -07 000000610 INF: Z Motor: Moving to -0.131421 mm, started at -0.138189 mm, distance = 6.77 um
17-03-18 06:32:14.074 -07 000000610 INF: FPGA: Xmit ZDACW 28709\n [Z Motor]
17-03-18 06:32:14.074 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:32:14.084 -07 000000610 INF: FPGA: 'ZDACW 28709' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:32:14.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:14.084 -07 000000502 INF: FPGA: Recv ZDACR 28709
17-03-18 06:32:14.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:14.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:14.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:14.244 -07 000000437 INF: FPGA: Recv ZSGSRD 29752
17-03-18 06:32:14.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:14.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:14.254 -07 000000479 INF: FPGA: Recv ZSGSRD 29750
17-03-18 06:32:14.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:14.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:14.264 -07 000000480 INF: FPGA: Recv ZSGSRD 29752
17-03-18 06:32:14.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:14.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:14.274 -07 000000437 INF: FPGA: Recv ZSGSRD 29749
17-03-18 06:32:14.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:14.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:14.284 -07 000000592 INF: FPGA: Recv ZSGSRD 29747
17-03-18 06:32:14.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:14.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:14.294 -07 000000606 INF: FPGA: Recv ZSGSRD 29740
17-03-18 06:32:14.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:14.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:14.304 -07 000000592 INF: FPGA: Recv ZSGSRD 29744
17-03-18 06:32:14.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:14.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:14.314 -07 000000479 INF: FPGA: Recv ZSGSRD 29754
17-03-18 06:32:14.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:14.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:14.324 -07 000000437 INF: FPGA: Recv ZSGSRD 29741
17-03-18 06:32:14.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:14.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:14.334 -07 000000424 INF: FPGA: Recv ZSGSRD 29747
17-03-18 06:32:14.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:14.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:14.344 -07 000000606 INF: FPGA: Recv ZPIEZORD 25227
17-03-18 06:32:14.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:14.354 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.9 V.
17-03-18 06:32:14.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29748 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29748 (-130.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29740 (-130.6 uncal um), Max = 29754 (-130.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:32:14.354 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29748, posNoise = 6, negNoise = 8
17-03-18 06:32:14.354 -07 000000610 INF: Z Motor: After move to -0.131421, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:14.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 06:32:14.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:14.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:14.354 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:14.354 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:14.354 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:14.354 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:14.354 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:14.354 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:14.354 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:14.354 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:14.354 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:32:14.354 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:14.354 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:14.354 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:14.364 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:32:14.364 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:14.364 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:32:14.364 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:32:14.374 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:32:14.374 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:32:14.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28886 150\n [Camera]
17-03-18 06:32:14.574 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:32:15.034 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:15.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:15.034 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:15.034 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:15.034 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:32:15.034 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:15.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:15.034 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:15.034 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:15.034 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:32:15.224 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28886 846
17-03-18 06:32:15.374 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:32:15.434 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:32:15.434 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:32:15.434 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:15.434 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:32:15.434 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:32:15.434 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:15.444 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:15.444 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:32:15.444 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:15.444 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:32:15.604 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:15.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:15.604 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:15.604 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:15.604 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 06:32:15.604 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:15.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:15.604 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:15.604 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:15.604 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 06:32:15.794 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:32:15.794 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:15.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28886 150' command took 2 ms to send, 1412 ms to get response, and 1418 ms overall
17-03-18 06:32:15.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:15.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.13143081480424. ------
17-03-18 06:32:15.794 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:15.794 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13786 mm
17-03-18 06:32:15.794 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:15.804 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:15.804 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 30115, sync = True, waitForSettling = False)
17-03-18 06:32:15.804 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:32:15.804 -07 000000479 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 06:32:15.804 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:15.804 -07 000000437 INF: Z Motor: Moving to -0.137858 mm, started at -0.131431 mm, distance = -6.43 um
17-03-18 06:32:15.804 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:32:15.804 -07 000000592 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:32:15.814 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:32:15.814 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:15.814 -07 000000479 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:15.814 -07 000000479 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:15.814 -07 000000479 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:32:15.824 -07 000000437 INF: FPGA: Xmit ZDACW 30115\n [Z Motor]
17-03-18 06:32:15.824 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:32:15.834 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:15.834 -07 000000437 INF: FPGA: 'ZDACW 30115' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:32:15.844 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:15.844 -07 000000502 INF: FPGA: Recv ZDACR 30115
17-03-18 06:32:15.854 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:32:15.854 -07 000000437 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 06:32:16.004 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:32:16.004 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:32:16.004 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:16.004 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:32:16.004 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:32:16.004 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:16.004 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:16.014 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:32:16.014 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:32:16.014 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:16.014 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-18 06:32:16.014 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:32:16.204 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 06:32:16.204 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:32:16.264 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:16.264 -07 000000438 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:32:16.274 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:16.274 -07 000000479 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:16.274 -07 000000479 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 06:32:16.274 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 06:32:16.864 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:32:16.864 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:32:17.224 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:17.224 -07 000000438 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:32:17.234 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:17.234 -07 000000479 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:17.264 -07 000000479 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:17.264 -07 000000479 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:32:17.264 -07 000000479 INF: Y Motor: Moved to 64.0557 after 1461 ms (table move)
17-03-18 06:32:17.264 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137858 mm (DAC = 30115)
17-03-18 06:32:17.264 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:17.274 -07 000000437 INF: FPGA: Recv ZSGSRD 30752
17-03-18 06:32:17.274 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:32:17.274 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:17.274 -07 000000591 INF: FPGA: Recv ZSGSRD 30753
17-03-18 06:32:17.284 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:17.284 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:17.284 -07 000000591 INF: FPGA: Recv ZSGSRD 30746
17-03-18 06:32:17.294 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:17.294 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:17.294 -07 000000424 INF: FPGA: Recv ZSGSRD 30744
17-03-18 06:32:17.304 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:17.304 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:17.304 -07 000000591 INF: FPGA: Recv ZSGSRD 30751
17-03-18 06:32:17.314 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:17.314 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:17.314 -07 000000606 INF: FPGA: Recv ZSGSRD 30750
17-03-18 06:32:17.324 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:17.324 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:17.324 -07 000000424 INF: FPGA: Recv ZSGSRD 30754
17-03-18 06:32:17.334 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:17.334 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:17.334 -07 000000424 INF: FPGA: Recv ZSGSRD 30752
17-03-18 06:32:17.344 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:17.344 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:17.344 -07 000000424 INF: FPGA: Recv ZSGSRD 30750
17-03-18 06:32:17.354 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:17.354 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:17.354 -07 000000424 INF: FPGA: Recv ZSGSRD 30750
17-03-18 06:32:17.364 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:17.364 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:17.364 -07 000000424 INF: FPGA: Recv ZPIEZORD 26567
17-03-18 06:32:17.374 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:17.374 -07 000000561 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.595 V. Piezo Error = -9.2 V.
17-03-18 06:32:17.374 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30750 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30750 (-137.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30744 (-137.0 uncal um), Max = 30754 (-137.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:32:17.374 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30750, posNoise = 4, negNoise = 6
17-03-18 06:32:17.374 -07 000000561 INF: Z Motor: After move to -0.137858, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:17.374 -07 000000561 INF: Z Motor: Settle wait time = 1464 ms, measure time = 104 ms (allowed 150 ms), total time = 1568 ms
17-03-18 06:32:17.374 -07 000000561 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:17.424 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 06:32:17.424 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:17.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:17.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:17.434 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:17.434 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:17.434 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:17.434 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:17.434 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:32:17.434 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:17.434 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:17.434 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:17.444 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:32:17.444 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:32:17.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:17.494 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:17.794 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:17.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:17.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:17.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 06:32:17.834 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:17.834 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:17.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 06:32:17.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:32:17.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:17.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:32:17.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:32:17.934 -07 000000592 INF: Autofocus start
17-03-18 06:32:17.934 -07 000000592 INF: MeasureProfile start
17-03-18 06:32:17.934 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:17.934 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:17.944 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:32:17.944 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:17.944 -07 000000592 INF: MeasureProfile done
17-03-18 06:32:17.944 -07 000000592 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:32:17.944 -07 000000592 INF: Autofocus finished
17-03-18 06:32:18.144 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:18.144 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 06:32:18.144 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.137867875370284. ----------
17-03-18 06:32:18.154 -07 000000610 INF: Cycle	150	Tile	6	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:18.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28639, sync = True, waitForSettling = True)
17-03-18 06:32:18.154 -07 000000610 INF: Z Motor: Moving to -0.131101 mm, started at -0.137868 mm, distance = 6.77 um
17-03-18 06:32:18.154 -07 000000610 INF: FPGA: Xmit ZDACW 28639\n [Z Motor]
17-03-18 06:32:18.154 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:32:18.164 -07 000000610 INF: FPGA: 'ZDACW 28639' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:18.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:18.164 -07 000000424 INF: FPGA: Recv ZDACR 28639
17-03-18 06:32:18.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:18.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:18.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:18.324 -07 000000480 INF: FPGA: Recv ZSGSRD 29702
17-03-18 06:32:18.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:18.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:18.334 -07 000000479 INF: FPGA: Recv ZSGSRD 29693
17-03-18 06:32:18.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:18.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:18.344 -07 000000480 INF: FPGA: Recv ZSGSRD 29694
17-03-18 06:32:18.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:18.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:18.354 -07 000000479 INF: FPGA: Recv ZSGSRD 29695
17-03-18 06:32:18.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:18.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:18.364 -07 000000480 INF: FPGA: Recv ZSGSRD 29700
17-03-18 06:32:18.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:18.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:18.374 -07 000000591 INF: FPGA: Recv ZSGSRD 29693
17-03-18 06:32:18.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:18.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:18.384 -07 000000480 INF: FPGA: Recv ZSGSRD 29694
17-03-18 06:32:18.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:18.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:18.394 -07 000000591 INF: FPGA: Recv ZSGSRD 29701
17-03-18 06:32:18.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:18.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:18.404 -07 000000480 INF: FPGA: Recv ZSGSRD 29700
17-03-18 06:32:18.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:18.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:18.414 -07 000000479 INF: FPGA: Recv ZSGSRD 29694
17-03-18 06:32:18.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:18.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:18.424 -07 000000592 INF: FPGA: Recv ZPIEZORD 25152
17-03-18 06:32:18.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:18.434 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -10.0 V.
17-03-18 06:32:18.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29697 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29694 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29693 (-130.3 uncal um), Max = 29702 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:32:18.434 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29697, posNoise = 5, negNoise = 4
17-03-18 06:32:18.434 -07 000000610 INF: Z Motor: After move to -0.131101, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:18.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:32:18.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:18.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:18.434 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:18.434 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:18.434 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:18.434 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:18.434 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:18.434 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:18.434 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:18.434 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:18.434 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:32:18.434 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:18.444 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:32:18.444 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:18.444 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:32:18.444 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:18.454 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:32:18.454 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:32:18.454 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:32:18.454 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:32:18.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28815 150\n [Camera]
17-03-18 06:32:18.654 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:32:19.064 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.975845,
17-03-18 06:32:19.114 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:19.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:19.114 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:19.114 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:19.114 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:32:19.124 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:19.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:19.124 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:19.124 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:19.124 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:32:19.314 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28815 846
17-03-18 06:32:19.464 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:32:19.514 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:32:19.514 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:32:19.514 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:19.514 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:19.514 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:32:19.514 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:32:19.514 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:32:19.514 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:19.524 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:19.524 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:32:19.684 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:19.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:19.684 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:19.814 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:19.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:19.814 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:19.814 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:19.814 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:32:19.824 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:19.824 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:32:19.874 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:32:19.874 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:19.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28815 150' command took 2 ms to send, 1414 ms to get response, and 1420 ms overall
17-03-18 06:32:19.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:19.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.13110317998501. ------
17-03-18 06:32:19.874 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:19.874 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13768 mm
17-03-18 06:32:19.874 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:19.884 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:32:19.884 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:19.884 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:32:19.884 -07 000000591 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 06:32:19.884 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:19.884 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30075, sync = True, waitForSettling = False)
17-03-18 06:32:19.884 -07 000000424 INF: Z Motor: Moving to -0.137675 mm, started at -0.131103 mm, distance = -6.57 um
17-03-18 06:32:19.884 -07 000000437 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:32:19.894 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:19.894 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:19.894 -07 000000591 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:19.894 -07 000000591 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:19.894 -07 000000591 INF: Y Motor: Moving 1338 steps-14
17-03-18 06:32:19.904 -07 000000424 INF: FPGA: Xmit ZDACW 30075\n [Z Motor]
17-03-18 06:32:19.904 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:32:19.914 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:19.914 -07 000000424 INF: FPGA: 'ZDACW 30075' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:32:19.924 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:19.924 -07 000000626 INF: FPGA: Recv ZDACR 30075
17-03-18 06:32:19.934 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:32:19.934 -07 000000424 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 06:32:20.094 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:20.094 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-18 06:32:20.214 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:32:20.214 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:32:20.214 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:20.214 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:32:20.214 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:32:20.214 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:20.224 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:20.224 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:20.224 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 537 ms.
17-03-18 06:32:20.224 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:32:20.284 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 06:32:20.284 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:32:20.344 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:20.344 -07 000000438 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:32:20.354 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:32:20.354 -07 000000591 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:20.354 -07 000000591 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:32:20.354 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.837 mm, average velocity = 2.130 mm/sec
17-03-18 06:32:21.304 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:21.304 -07 000000438 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:32:21.314 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:21.314 -07 000000591 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:21.344 -07 000000591 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:21.344 -07 000000591 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:32:21.344 -07 000000591 INF: Y Motor: Moved to 64.8774 after 1460 ms (table move)
17-03-18 06:32:21.344 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137675 mm (DAC = 30075)
17-03-18 06:32:21.344 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:21.354 -07 000000502 INF: FPGA: Recv ZSGSRD 30720
17-03-18 06:32:21.354 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:32:21.354 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:21.354 -07 000000591 INF: FPGA: Recv ZSGSRD 30724
17-03-18 06:32:21.364 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:21.364 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:21.364 -07 000000626 INF: FPGA: Recv ZSGSRD 30726
17-03-18 06:32:21.374 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:21.374 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:21.374 -07 000000591 INF: FPGA: Recv ZSGSRD 30719
17-03-18 06:32:21.384 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:21.384 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:21.384 -07 000000479 INF: FPGA: Recv ZSGSRD 30726
17-03-18 06:32:21.394 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:21.394 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:21.394 -07 000000591 INF: FPGA: Recv ZSGSRD 30716
17-03-18 06:32:21.404 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:21.404 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:21.404 -07 000000479 INF: FPGA: Recv ZSGSRD 30718
17-03-18 06:32:21.414 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:21.414 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:21.414 -07 000000480 INF: FPGA: Recv ZSGSRD 30721
17-03-18 06:32:21.424 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:21.424 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:21.424 -07 000000424 INF: FPGA: Recv ZSGSRD 30725
17-03-18 06:32:21.434 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:21.434 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:21.434 -07 000000437 INF: FPGA: Recv ZSGSRD 30722
17-03-18 06:32:21.444 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:21.444 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:21.444 -07 000000447 INF: FPGA: Recv ZPIEZORD 26515
17-03-18 06:32:21.454 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:21.454 -07 000000382 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.589 V. Piezo Error = -9.2 V.
17-03-18 06:32:21.454 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30722 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30722 (-136.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30716 (-136.9 uncal um), Max = 30726 (-136.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:32:21.454 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30722, posNoise = 4, negNoise = 6
17-03-18 06:32:21.454 -07 000000382 INF: Z Motor: After move to -0.137675, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:21.454 -07 000000382 INF: Z Motor: Settle wait time = 1464 ms, measure time = 103 ms (allowed 150 ms), total time = 1567 ms
17-03-18 06:32:21.454 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:21.504 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 06:32:21.504 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:21.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:21.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:21.504 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:21.504 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:21.504 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:21.504 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:21.514 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:21.514 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:21.514 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:32:21.514 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:21.524 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:32:21.524 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:32:21.524 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:21.564 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:21.864 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:21.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:21.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:21.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-18 06:32:21.874 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:32:21.904 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:21.904 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:21.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:32:21.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 06:32:21.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:21.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:32:21.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:32:21.994 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:32:22.004 -07 000000561 INF: Autofocus start
17-03-18 06:32:22.004 -07 000000561 INF: MeasureProfile start
17-03-18 06:32:22.004 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:22.004 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:22.014 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:22.014 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:22.014 -07 000000561 INF: MeasureProfile done
17-03-18 06:32:22.014 -07 000000561 INF: X=20  Z correction [um]=0.07225946
17-03-18 06:32:22.014 -07 000000561 INF: Autofocus finished
17-03-18 06:32:22.214 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:22.214 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:32:22.214 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.137687997430315. ----------
17-03-18 06:32:22.224 -07 000000610 INF: Cycle	150	Tile	7	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:22.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28604, sync = True, waitForSettling = True)
17-03-18 06:32:22.224 -07 000000610 INF: Z Motor: Moving to -0.130941 mm, started at -0.137688 mm, distance = 6.75 um
17-03-18 06:32:22.224 -07 000000610 INF: FPGA: Xmit ZDACW 28604\n [Z Motor]
17-03-18 06:32:22.224 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:32:22.234 -07 000000610 INF: FPGA: 'ZDACW 28604' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:32:22.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:22.234 -07 000000438 INF: FPGA: Recv ZDACR 28604
17-03-18 06:32:22.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:22.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:22.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:22.394 -07 000000437 INF: FPGA: Recv ZSGSRD 29677
17-03-18 06:32:22.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:22.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:22.404 -07 000000438 INF: FPGA: Recv ZSGSRD 29674
17-03-18 06:32:22.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:22.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:22.414 -07 000000424 INF: FPGA: Recv ZSGSRD 29671
17-03-18 06:32:22.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:22.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:22.424 -07 000000437 INF: FPGA: Recv ZSGSRD 29668
17-03-18 06:32:22.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:22.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:22.434 -07 000000424 INF: FPGA: Recv ZSGSRD 29676
17-03-18 06:32:22.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:22.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:22.444 -07 000000438 INF: FPGA: Recv ZSGSRD 29673
17-03-18 06:32:22.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:22.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:22.454 -07 000000424 INF: FPGA: Recv ZSGSRD 29675
17-03-18 06:32:22.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:22.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:22.464 -07 000000438 INF: FPGA: Recv ZSGSRD 29674
17-03-18 06:32:22.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:22.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:22.474 -07 000000424 INF: FPGA: Recv ZSGSRD 29666
17-03-18 06:32:22.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:22.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:22.484 -07 000000438 INF: FPGA: Recv ZSGSRD 29676
17-03-18 06:32:22.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:22.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:22.494 -07 000000437 INF: FPGA: Recv ZPIEZORD 25157
17-03-18 06:32:22.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:22.504 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -9.9 V.
17-03-18 06:32:22.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29673 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29674 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29666 (-130.1 uncal um), Max = 29677 (-130.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:32:22.504 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29673, posNoise = 4, negNoise = 7
17-03-18 06:32:22.504 -07 000000610 INF: Z Motor: After move to -0.130941, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:22.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:32:22.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:22.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:22.504 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:22.504 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:22.504 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:22.504 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:22.504 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:22.504 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:32:22.504 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:22.504 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:22.504 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:32:22.504 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:22.504 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:22.504 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:22.514 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:32:22.514 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:22.514 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:32:22.514 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:32:22.524 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:32:22.524 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:32:22.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28780 150\n [Camera]
17-03-18 06:32:22.724 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:32:23.184 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:23.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:23.184 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:23.184 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:23.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:23.194 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:23.194 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:23.194 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2604644624, 0x0, 391868352) start.
17-03-18 06:32:23.194 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:23.194 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:32:23.374 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28780 846
17-03-18 06:32:23.524 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:32:23.584 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2604644624, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:32:23.584 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:32:23.584 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:23.584 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:32:23.584 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:32:23.584 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:23.594 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:23.594 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:32:23.594 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:23.594 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:32:23.744 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:23.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:23.754 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:23.754 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:23.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:23.754 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:23.874 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:23.874 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 06:32:23.874 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:23.874 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:32:23.944 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:32:23.944 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:23.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28780 150' command took 2 ms to send, 1411 ms to get response, and 1418 ms overall
17-03-18 06:32:23.944 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:23.944 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.130948998893608. ------
17-03-18 06:32:23.944 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:23.944 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13771 mm
17-03-18 06:32:23.944 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:23.944 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30082, sync = True, waitForSettling = False)
17-03-18 06:32:23.944 -07 000000447 INF: Z Motor: Moving to -0.137707 mm, started at -0.130949 mm, distance = -6.76 um
17-03-18 06:32:23.944 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:32:23.944 -07 000000606 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 06:32:23.954 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:23.954 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:32:23.954 -07 000000447 INF: FPGA: Xmit ZDACW 30082\n [Z Motor]
17-03-18 06:32:23.954 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:32:23.964 -07 000000447 INF: FPGA: 'ZDACW 30082' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:23.964 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:23.964 -07 000000438 INF: FPGA: Recv ZDACR 30082
17-03-18 06:32:23.974 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:23.974 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:23.974 -07 000000447 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 06:32:23.984 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:23.984 -07 000000438 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:32:23.994 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 40 ms overall
17-03-18 06:32:23.994 -07 000000606 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:23.994 -07 000000606 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:23.994 -07 000000606 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:32:23.994 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:24.174 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:24.174 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:32:24.264 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:32:24.264 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:32:24.264 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:24.264 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:24.264 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:32:24.264 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:32:24.264 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:24.274 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:24.274 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 06:32:24.274 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-18 06:32:24.374 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:32:24.374 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 378 ms overall
17-03-18 06:32:24.434 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.983999,
17-03-18 06:32:24.444 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:24.444 -07 000000382 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:32:24.454 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:32:24.454 -07 000000606 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:24.454 -07 000000606 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:32:24.454 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.236 mm/sec
17-03-18 06:32:25.404 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:25.404 -07 000000592 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:32:25.414 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:25.414 -07 000000606 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:25.454 -07 000000606 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:25.454 -07 000000606 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:32:25.454 -07 000000606 INF: Y Motor: Moved to 65.7129 after 1500 ms (table move)
17-03-18 06:32:25.454 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137707 mm (DAC = 30082)
17-03-18 06:32:25.454 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:25.454 -07 000000424 INF: FPGA: Recv ZSGSRD 30724
17-03-18 06:32:25.464 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:25.464 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:25.464 -07 000000561 INF: FPGA: Recv ZSGSRD 30730
17-03-18 06:32:25.474 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:25.474 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:25.474 -07 000000561 INF: FPGA: Recv ZSGSRD 30725
17-03-18 06:32:25.484 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:25.484 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:25.484 -07 000000561 INF: FPGA: Recv ZSGSRD 30722
17-03-18 06:32:25.494 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:25.494 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:25.494 -07 000000424 INF: FPGA: Recv ZSGSRD 30724
17-03-18 06:32:25.504 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:25.504 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:25.504 -07 000000424 INF: FPGA: Recv ZSGSRD 30729
17-03-18 06:32:25.514 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:25.514 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:25.514 -07 000000424 INF: FPGA: Recv ZSGSRD 30732
17-03-18 06:32:25.524 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:25.524 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:25.524 -07 000000424 INF: FPGA: Recv ZSGSRD 30730
17-03-18 06:32:25.534 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:25.534 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:25.534 -07 000000424 INF: FPGA: Recv ZSGSRD 30726
17-03-18 06:32:25.544 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:25.544 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:25.544 -07 000000424 INF: FPGA: Recv ZSGSRD 30724
17-03-18 06:32:25.554 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:25.554 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:25.554 -07 000000424 INF: FPGA: Recv ZPIEZORD 26542
17-03-18 06:32:25.564 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:25.564 -07 000000479 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -9.2 V.
17-03-18 06:32:25.564 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30727 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30726 (-136.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30722 (-136.9 uncal um), Max = 30732 (-137.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:32:25.564 -07 000000479 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30727, posNoise = 5, negNoise = 5
17-03-18 06:32:25.564 -07 000000479 INF: Z Motor: After move to -0.137707, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:25.564 -07 000000479 INF: Z Motor: Settle wait time = 1504 ms, measure time = 107 ms (allowed 150 ms), total time = 1611 ms
17-03-18 06:32:25.564 -07 000000479 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:25.614 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1663 ms
17-03-18 06:32:25.614 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:25.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:25.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:25.614 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:25.614 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:25.614 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:25.614 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:25.614 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:25.614 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:25.624 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:25.624 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:25.624 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:32:25.624 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:32:25.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:25.674 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:25.974 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:25.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:25.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:25.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 06:32:26.014 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:26.014 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:26.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:32:26.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:32:26.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:26.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:32:26.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:32:26.114 -07 000000561 INF: Autofocus start
17-03-18 06:32:26.114 -07 000000561 INF: MeasureProfile start
17-03-18 06:32:26.114 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:26.114 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:26.124 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:32:26.124 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:26.124 -07 000000561 INF: MeasureProfile done
17-03-18 06:32:26.124 -07 000000561 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:32:26.124 -07 000000561 INF: Autofocus finished
17-03-18 06:32:26.324 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:26.324 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 06:32:26.334 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.137720118491024. ----------
17-03-18 06:32:26.334 -07 000000610 INF: Cycle	150	Tile	8	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:26.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28577, sync = True, waitForSettling = True)
17-03-18 06:32:26.344 -07 000000610 INF: Z Motor: Moving to -0.130817 mm, started at -0.137720 mm, distance = 6.90 um
17-03-18 06:32:26.344 -07 000000610 INF: FPGA: Xmit ZDACW 28577\n [Z Motor]
17-03-18 06:32:26.344 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:32:26.354 -07 000000610 INF: FPGA: 'ZDACW 28577' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:32:26.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:26.354 -07 000000502 INF: FPGA: Recv ZDACR 28577
17-03-18 06:32:26.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:26.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:26.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:26.514 -07 000000502 INF: FPGA: Recv ZSGSRD 29659
17-03-18 06:32:26.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:26.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:26.524 -07 000000438 INF: FPGA: Recv ZSGSRD 29657
17-03-18 06:32:26.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:26.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:26.534 -07 000000502 INF: FPGA: Recv ZSGSRD 29651
17-03-18 06:32:26.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:26.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:26.544 -07 000000591 INF: FPGA: Recv ZSGSRD 29651
17-03-18 06:32:26.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:26.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:26.554 -07 000000561 INF: FPGA: Recv ZSGSRD 29662
17-03-18 06:32:26.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:26.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:26.564 -07 000000438 INF: FPGA: Recv ZSGSRD 29654
17-03-18 06:32:26.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:26.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:26.574 -07 000000502 INF: FPGA: Recv ZSGSRD 29652
17-03-18 06:32:26.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:26.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:26.584 -07 000000591 INF: FPGA: Recv ZSGSRD 29652
17-03-18 06:32:26.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:26.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:26.594 -07 000000561 INF: FPGA: Recv ZSGSRD 29658
17-03-18 06:32:26.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:26.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:26.604 -07 000000438 INF: FPGA: Recv ZSGSRD 29655
17-03-18 06:32:26.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:26.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:26.614 -07 000000591 INF: FPGA: Recv ZPIEZORD 25154
17-03-18 06:32:26.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:26.624 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.9 V.
17-03-18 06:32:26.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29655 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29654 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29651 (-130.0 uncal um), Max = 29662 (-130.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:32:26.624 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29655, posNoise = 7, negNoise = 4
17-03-18 06:32:26.624 -07 000000610 INF: Z Motor: After move to -0.130817, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:26.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:32:26.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:26.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:26.624 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:26.624 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:26.624 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:26.624 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:26.624 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:32:26.624 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:26.634 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:26.634 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:26.634 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:32:26.634 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:26.634 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:32:26.634 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:26.634 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:32:26.634 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:26.644 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:32:26.644 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:32:26.644 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:32:26.644 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:32:26.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28754 150\n [Camera]
17-03-18 06:32:26.844 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 06:32:26.864 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:32:26.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:32:27.304 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:27.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:27.304 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:27.314 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:27.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:27.314 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:27.314 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:27.314 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2600239320, 0x0, 391868352) start.
17-03-18 06:32:27.314 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:27.314 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:32:27.504 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28754 846
17-03-18 06:32:27.654 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:32:27.704 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:32:27.704 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:32:27.704 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:27.704 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2600239320, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:32:27.704 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:32:27.704 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:27.704 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:27.704 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:27.704 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:32:27.714 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:32:27.874 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:27.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:27.874 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:27.874 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:27.874 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:27.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:27.874 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:32:27.874 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:27.874 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:27.874 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) start.
17-03-18 06:32:28.064 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:32:28.064 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:28.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28754 150' command took 2 ms to send, 1406 ms to get response, and 1418 ms overall
17-03-18 06:32:28.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:28.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.130833363075056. ------
17-03-18 06:32:28.074 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:28.074 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13708 mm
17-03-18 06:32:28.074 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:28.074 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:28.074 -07 000000592 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:32:28.074 -07 000000592 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 06:32:28.074 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29945, sync = True, waitForSettling = False)
17-03-18 06:32:28.074 -07 000000447 INF: Z Motor: Moving to -0.137079 mm, started at -0.130833 mm, distance = -6.25 um
17-03-18 06:32:28.184 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:28.184 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-18 06:32:28.194 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:28.194 -07 000000479 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:32:28.194 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 116 ms overall
17-03-18 06:32:28.194 -07 000000592 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:28.194 -07 000000592 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:28.194 -07 000000592 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:32:28.204 -07 000000447 INF: FPGA: Xmit ZDACW 29945\n [Z Motor]
17-03-18 06:32:28.204 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:32:28.214 -07 000000592 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:28.214 -07 000000447 INF: FPGA: 'ZDACW 29945' command took 0 ms to send, 0 ms to get response, and 135 ms overall
17-03-18 06:32:28.224 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:28.224 -07 000000438 INF: FPGA: Recv ZDACR 29945
17-03-18 06:32:28.234 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:32:28.234 -07 000000447 INF: Z Motor: MoveAbsStepped took 155 ms (did NOT wait for settling yet))
17-03-18 06:32:28.274 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:32:28.274 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:32:28.274 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:28.274 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:32:28.274 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:32:28.274 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:28.274 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:28.274 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:28.274 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:32:28.284 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:32:28.394 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:28.394 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 204 ms overall
17-03-18 06:32:28.584 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 06:32:28.584 -07 000000592 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 06:32:28.644 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:28.644 -07 000000502 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:32:28.654 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:28.654 -07 000000592 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:28.654 -07 000000592 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:32:28.654 -07 000000592 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.840 mm, average velocity = 2.120 mm/sec
17-03-18 06:32:29.604 -07 000000592 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:29.604 -07 000000606 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:32:29.614 -07 000000592 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:29.614 -07 000000592 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:29.644 -07 000000592 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:29.644 -07 000000592 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:32:29.644 -07 000000592 INF: Y Motor: Moved to 66.5381 after 1571 ms (table move)
17-03-18 06:32:29.644 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137079 mm (DAC = 29945)
17-03-18 06:32:29.644 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:29.654 -07 000000592 INF: FPGA: Recv ZSGSRD 30625
17-03-18 06:32:29.654 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:32:29.654 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:29.654 -07 000000592 INF: FPGA: Recv ZSGSRD 30632
17-03-18 06:32:29.664 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:32:29.664 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:29.664 -07 000000592 INF: FPGA: Recv ZSGSRD 30627
17-03-18 06:32:29.674 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:29.674 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:29.674 -07 000000592 INF: FPGA: Recv ZSGSRD 30628
17-03-18 06:32:29.684 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:29.684 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:29.684 -07 000000592 INF: FPGA: Recv ZSGSRD 30626
17-03-18 06:32:29.694 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:29.694 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:29.694 -07 000000447 INF: FPGA: Recv ZSGSRD 30618
17-03-18 06:32:29.704 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:29.704 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:29.704 -07 000000561 INF: FPGA: Recv ZSGSRD 30629
17-03-18 06:32:29.714 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:29.714 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:29.714 -07 000000561 INF: FPGA: Recv ZSGSRD 30634
17-03-18 06:32:29.724 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:29.724 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:29.724 -07 000000561 INF: FPGA: Recv ZSGSRD 30627
17-03-18 06:32:29.734 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:29.734 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:29.734 -07 000000382 INF: FPGA: Recv ZSGSRD 30628
17-03-18 06:32:29.744 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:29.744 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:29.744 -07 000000382 INF: FPGA: Recv ZPIEZORD 26419
17-03-18 06:32:29.754 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:29.754 -07 000000591 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.569 V. Piezo Error = -9.3 V.
17-03-18 06:32:29.754 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30627 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30628 (-136.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30618 (-136.2 uncal um), Max = 30634 (-136.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:32:29.754 -07 000000591 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30627, posNoise = 7, negNoise = 9
17-03-18 06:32:29.754 -07 000000591 INF: Z Motor: After move to -0.137079, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:29.754 -07 000000591 INF: Z Motor: Settle wait time = 1574 ms, measure time = 102 ms (allowed 150 ms), total time = 1676 ms
17-03-18 06:32:29.754 -07 000000591 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:29.804 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1728 ms
17-03-18 06:32:29.804 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:29.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:29.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:29.804 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:29.804 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:29.804 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:29.804 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:29.814 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:29.814 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:29.814 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.979922,
17-03-18 06:32:29.814 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:29.814 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:29.824 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:32:29.824 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:32:29.834 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:29.874 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:30.174 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:30.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:30.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:30.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:32:30.214 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:30.214 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:30.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall
17-03-18 06:32:30.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:32:30.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:30.294 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:32:30.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:32:30.314 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:30.314 -07 000000447 INF: Autofocus start
17-03-18 06:32:30.314 -07 000000447 INF: MeasureProfile start
17-03-18 06:32:30.314 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:30.324 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:32:30.324 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:30.334 -07 000000447 INF: MeasureProfile done
17-03-18 06:32:30.334 -07 000000447 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:32:30.334 -07 000000447 INF: Autofocus finished
17-03-18 06:32:30.524 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:30.524 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:32:30.534 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.137077697276848. ----------
17-03-18 06:32:30.534 -07 000000610 INF: Cycle	150	Tile	9	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:30.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28485, sync = True, waitForSettling = True)
17-03-18 06:32:30.534 -07 000000610 INF: Z Motor: Moving to -0.130396 mm, started at -0.137078 mm, distance = 6.68 um
17-03-18 06:32:30.534 -07 000000610 INF: FPGA: Xmit ZDACW 28485\n [Z Motor]
17-03-18 06:32:30.534 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:32:30.544 -07 000000610 INF: FPGA: 'ZDACW 28485' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:30.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:30.544 -07 000000479 INF: FPGA: Recv ZDACR 28485
17-03-18 06:32:30.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:30.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:30.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:30.704 -07 000000479 INF: FPGA: Recv ZSGSRD 29591
17-03-18 06:32:30.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:30.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:30.714 -07 000000479 INF: FPGA: Recv ZSGSRD 29589
17-03-18 06:32:30.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:30.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:30.724 -07 000000479 INF: FPGA: Recv ZSGSRD 29581
17-03-18 06:32:30.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:30.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:30.734 -07 000000561 INF: FPGA: Recv ZSGSRD 29584
17-03-18 06:32:30.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:30.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:30.744 -07 000000561 INF: FPGA: Recv ZSGSRD 29589
17-03-18 06:32:30.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:30.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:30.754 -07 000000606 INF: FPGA: Recv ZSGSRD 29592
17-03-18 06:32:30.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:30.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:30.764 -07 000000606 INF: FPGA: Recv ZSGSRD 29593
17-03-18 06:32:30.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:30.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:30.774 -07 000000606 INF: FPGA: Recv ZSGSRD 29591
17-03-18 06:32:30.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:30.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:30.784 -07 000000606 INF: FPGA: Recv ZSGSRD 29584
17-03-18 06:32:30.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:30.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:30.794 -07 000000606 INF: FPGA: Recv ZSGSRD 29590
17-03-18 06:32:30.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:30.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:30.804 -07 000000606 INF: FPGA: Recv ZPIEZORD 25069
17-03-18 06:32:30.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:30.814 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.9 V.
17-03-18 06:32:30.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29588 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29590 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29581 (-129.6 uncal um), Max = 29593 (-129.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:32:30.814 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29588, posNoise = 5, negNoise = 7
17-03-18 06:32:30.814 -07 000000610 INF: Z Motor: After move to -0.130396, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:30.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:32:30.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:30.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:30.814 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:30.814 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:30.814 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:30.814 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:30.814 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:30.814 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:30.814 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:30.814 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:32:30.814 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:30.814 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:30.824 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:32:30.824 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:30.824 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:32:30.824 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:30.834 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:32:30.834 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:32:30.834 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:32:30.834 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:32:30.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28662 150\n [Camera]
17-03-18 06:32:31.034 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:32:31.494 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:31.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:31.494 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:31.494 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:31.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:31.494 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:31.494 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:31.494 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:32:31.504 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:31.504 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:32:31.684 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28662 846
17-03-18 06:32:31.834 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:32:31.864 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:32:31.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:32:31.874 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:32:31.874 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:32:31.874 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 06:32:31.874 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:31.874 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:32:31.874 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:31.884 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:32:31.884 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:32:31.884 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:32:31.884 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:32:32.054 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:32.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:32.054 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:32.064 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:32.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:32.064 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:32.064 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:32.064 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:32:32.064 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:32.064 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 06:32:32.244 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:32:32.254 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:32.254 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28662 150' command took 2 ms to send, 1410 ms to get response, and 1418 ms overall
17-03-18 06:32:32.254 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:32.254 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.130402940861558. ------
17-03-18 06:32:32.254 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:32.254 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13717 mm
17-03-18 06:32:32.254 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:32.254 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:32:32.254 -07 000000606 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 06:32:32.254 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:32.254 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 29965, sync = True, waitForSettling = False)
17-03-18 06:32:32.254 -07 000000592 INF: Z Motor: Moving to -0.137171 mm, started at -0.130403 mm, distance = -6.77 um
17-03-18 06:32:32.264 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:32:32.264 -07 000000592 INF: FPGA: Xmit ZDACW 29965\n [Z Motor]
17-03-18 06:32:32.264 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:32:32.274 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:32.274 -07 000000592 INF: FPGA: 'ZDACW 29965' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:32:32.274 -07 000000382 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:32:32.284 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:32.284 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:32:32.284 -07 000000606 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:32.284 -07 000000606 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:32.284 -07 000000606 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:32:32.294 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:32.294 -07 000000626 INF: FPGA: Recv ZDACR 29965
17-03-18 06:32:32.304 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:32.304 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:32:32.304 -07 000000592 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 06:32:32.454 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 06:32:32.454 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:32:32.454 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:32.454 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:32:32.454 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:32:32.454 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:32.464 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:32.464 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:32:32.464 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:32.464 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:32:32.484 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:32.484 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:32:32.674 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:32:32.674 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:32:32.734 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:32.734 -07 000000438 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:32:32.744 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:32:32.744 -07 000000606 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:32.744 -07 000000606 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 06:32:32.744 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.122 mm/sec
17-03-18 06:32:33.694 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:33.694 -07 000000455 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:32:33.704 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:33.704 -07 000000606 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:33.764 -07 000000606 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:33.764 -07 000000606 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:32:33.764 -07 000000606 INF: Y Motor: Moved to 67.3711 after 1508 ms (table move)
17-03-18 06:32:33.774 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137171 mm (DAC = 29965)
17-03-18 06:32:33.774 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:33.774 -07 000000382 INF: FPGA: Recv ZSGSRD 30644
17-03-18 06:32:33.784 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:32:33.784 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:33.784 -07 000000447 INF: FPGA: Recv ZSGSRD 30640
17-03-18 06:32:33.794 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:33.794 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:33.794 -07 000000438 INF: FPGA: Recv ZSGSRD 30643
17-03-18 06:32:33.804 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:33.804 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:33.804 -07 000000606 INF: FPGA: Recv ZSGSRD 30644
17-03-18 06:32:33.814 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:33.814 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:33.814 -07 000000591 INF: FPGA: Recv ZSGSRD 30643
17-03-18 06:32:33.824 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:33.824 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:33.824 -07 000000455 INF: FPGA: Recv ZSGSRD 30645
17-03-18 06:32:33.834 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:33.834 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:33.834 -07 000000606 INF: FPGA: Recv ZSGSRD 30640
17-03-18 06:32:33.844 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:33.844 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:33.844 -07 000000626 INF: FPGA: Recv ZSGSRD 30642
17-03-18 06:32:33.854 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:33.854 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:33.854 -07 000000382 INF: FPGA: Recv ZSGSRD 30643
17-03-18 06:32:33.864 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:33.864 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:33.864 -07 000000479 INF: FPGA: Recv ZSGSRD 30640
17-03-18 06:32:33.874 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:33.874 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:33.874 -07 000000626 INF: FPGA: Recv ZPIEZORD 26481
17-03-18 06:32:33.884 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:33.884 -07 000000561 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.572 V. Piezo Error = -9.2 V.
17-03-18 06:32:33.884 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30642 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30643 (-136.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30640 (-136.4 uncal um), Max = 30645 (-136.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:32:33.884 -07 000000561 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30642, posNoise = 3, negNoise = 2
17-03-18 06:32:33.884 -07 000000561 INF: Z Motor: After move to -0.137171, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:33.884 -07 000000561 INF: Z Motor: Settle wait time = 1513 ms, measure time = 108 ms (allowed 150 ms), total time = 1621 ms
17-03-18 06:32:33.884 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:33.934 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1675 ms
17-03-18 06:32:33.934 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:33.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:33.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:33.934 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:33.934 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:33.934 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:33.934 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:33.934 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:33.934 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:33.944 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:33.944 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:33.944 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:32:33.944 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:32:33.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:33.994 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:34.294 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:34.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:34.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:34.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2736656032, 0x0, 559484976) start.
17-03-18 06:32:34.334 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:34.334 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:34.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:32:34.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2736656032, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:32:34.414 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:34.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:32:34.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:32:34.434 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:34.434 -07 000000606 INF: Autofocus start
17-03-18 06:32:34.434 -07 000000606 INF: MeasureProfile start
17-03-18 06:32:34.434 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:34.444 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:32:34.444 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:34.444 -07 000000606 INF: MeasureProfile done
17-03-18 06:32:34.444 -07 000000606 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:32:34.444 -07 000000606 INF: Autofocus finished
17-03-18 06:32:34.644 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:34.644 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 06:32:34.654 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.137174060458974. ----------
17-03-18 06:32:34.654 -07 000000610 INF: Cycle	150	Tile	10	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:34.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28472, sync = True, waitForSettling = True)
17-03-18 06:32:34.654 -07 000000610 INF: Z Motor: Moving to -0.130336 mm, started at -0.137174 mm, distance = 6.84 um
17-03-18 06:32:34.654 -07 000000610 INF: FPGA: Xmit ZDACW 28472\n [Z Motor]
17-03-18 06:32:34.654 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:32:34.664 -07 000000610 INF: FPGA: 'ZDACW 28472' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:34.664 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:34.664 -07 000000480 INF: FPGA: Recv ZDACR 28472
17-03-18 06:32:34.674 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:34.674 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:34.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:34.824 -07 000000437 INF: FPGA: Recv ZSGSRD 29580
17-03-18 06:32:34.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:34.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:34.834 -07 000000606 INF: FPGA: Recv ZSGSRD 29583
17-03-18 06:32:34.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:34.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:34.844 -07 000000502 INF: FPGA: Recv ZSGSRD 29581
17-03-18 06:32:34.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:34.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:34.854 -07 000000480 INF: FPGA: Recv ZSGSRD 29576
17-03-18 06:32:34.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:34.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:34.874 -07 000000455 INF: FPGA: Recv ZSGSRD 29583
17-03-18 06:32:34.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:32:34.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:34.884 -07 000000382 INF: FPGA: Recv ZSGSRD 29576
17-03-18 06:32:34.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:34.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:34.894 -07 000000480 INF: FPGA: Recv ZSGSRD 29575
17-03-18 06:32:34.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:34.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:34.904 -07 000000626 INF: FPGA: Recv ZSGSRD 29577
17-03-18 06:32:34.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:34.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:34.914 -07 000000502 INF: FPGA: Recv ZSGSRD 29584
17-03-18 06:32:34.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:34.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:34.924 -07 000000479 INF: FPGA: Recv ZSGSRD 29581
17-03-18 06:32:34.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:34.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:34.934 -07 000000591 INF: FPGA: Recv ZPIEZORD 25047
17-03-18 06:32:34.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:34.944 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.345 V. Piezo Error = -9.9 V.
17-03-18 06:32:34.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29580 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29580 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29575 (-129.5 uncal um), Max = 29584 (-129.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:32:34.944 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29580, posNoise = 4, negNoise = 5
17-03-18 06:32:34.944 -07 000000610 INF: Z Motor: After move to -0.130336, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:34.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-18 06:32:34.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:34.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:34.944 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:34.944 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:34.944 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:34.944 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:34.944 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:34.944 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:34.944 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:32:34.944 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:34.944 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:32:34.944 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:34.954 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:34.954 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:34.954 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:32:34.954 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:34.954 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:32:34.954 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:32:34.964 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:32:34.964 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:32:34.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28649 150\n [Camera]
17-03-18 06:32:35.164 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:32:35.184 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.003063,
17-03-18 06:32:35.624 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:35.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:35.624 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:35.624 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:35.624 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:32:35.624 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:35.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:35.624 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:35.624 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:35.624 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:32:35.814 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28649 846
17-03-18 06:32:35.964 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning grn on 997
17-03-18 06:32:36.004 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:32:36.014 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:32:36.014 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:36.014 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:36.014 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:32:36.014 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:32:36.014 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:36.024 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:32:36.024 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:36.024 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:32:36.184 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:36.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:36.194 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:36.194 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:36.194 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:36.194 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:32:36.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:36.194 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:36.194 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:36.194 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:32:36.384 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:32:36.384 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:36.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28649 150' command took 2 ms to send, 1411 ms to get response, and 1417 ms overall
17-03-18 06:32:36.384 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:36.384 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.130351547164424. ------
17-03-18 06:32:36.514 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:36.514 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13678 mm
17-03-18 06:32:36.514 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:36.514 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:32:36.514 -07 000000561 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 06:32:36.514 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29880, sync = True, waitForSettling = False)
17-03-18 06:32:36.514 -07 000000447 INF: Z Motor: Moving to -0.136782 mm, started at -0.130352 mm, distance = -6.43 um
17-03-18 06:32:36.514 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:36.524 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:32:36.524 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:36.524 -07 000000455 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:32:36.534 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:32:36.534 -07 000000561 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:36.534 -07 000000561 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:36.534 -07 000000561 INF: Y Motor: Moving 1346 steps-25
17-03-18 06:32:36.534 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:36.544 -07 000000447 INF: FPGA: Xmit ZDACW 29880\n [Z Motor]
17-03-18 06:32:36.544 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:32:36.554 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:36.554 -07 000000447 INF: FPGA: 'ZDACW 29880' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:32:36.564 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:36.564 -07 000000437 INF: FPGA: Recv ZDACR 29880
17-03-18 06:32:36.574 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:32:36.574 -07 000000447 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:32:36.594 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:32:36.594 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:32:36.594 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:36.594 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:32:36.594 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:32:36.594 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:36.594 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:36.594 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:36.594 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:32:36.604 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:32:36.734 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:36.734 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 213 ms overall
17-03-18 06:32:36.864 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:32:36.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:32:36.924 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:32:36.924 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:32:36.974 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:36.984 -07 000000480 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:32:36.984 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:32:36.984 -07 000000561 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:36.984 -07 000000561 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:32:36.984 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.120 mm/sec
17-03-18 06:32:37.934 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:37.934 -07 000000479 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:32:37.944 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:37.944 -07 000000561 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:37.974 -07 000000561 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:37.974 -07 000000561 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:32:37.974 -07 000000561 INF: Y Motor: Moved to 68.2036 after 1454 ms (table move)
17-03-18 06:32:37.974 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136782 mm (DAC = 29880)
17-03-18 06:32:37.974 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:37.974 -07 000000424 INF: FPGA: Recv ZSGSRD 30589
17-03-18 06:32:37.984 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:32:37.984 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:37.984 -07 000000437 INF: FPGA: Recv ZSGSRD 30584
17-03-18 06:32:37.994 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:37.994 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:37.994 -07 000000455 INF: FPGA: Recv ZSGSRD 30583
17-03-18 06:32:38.004 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:38.004 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:38.004 -07 000000592 INF: FPGA: Recv ZSGSRD 30583
17-03-18 06:32:38.014 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:32:38.014 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:38.014 -07 000000424 INF: FPGA: Recv ZSGSRD 30575
17-03-18 06:32:38.024 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:38.024 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:38.024 -07 000000480 INF: FPGA: Recv ZSGSRD 30583
17-03-18 06:32:38.034 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:38.034 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:38.034 -07 000000424 INF: FPGA: Recv ZSGSRD 30587
17-03-18 06:32:38.044 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:38.044 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:38.044 -07 000000437 INF: FPGA: Recv ZSGSRD 30580
17-03-18 06:32:38.054 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:38.054 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:38.054 -07 000000424 INF: FPGA: Recv ZSGSRD 30581
17-03-18 06:32:38.064 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:38.064 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:38.064 -07 000000437 INF: FPGA: Recv ZSGSRD 30586
17-03-18 06:32:38.074 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:38.074 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:38.074 -07 000000455 INF: FPGA: Recv ZPIEZORD 26375
17-03-18 06:32:38.084 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:38.084 -07 000000382 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -9.3 V.
17-03-18 06:32:38.084 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30583 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30583 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30575 (-135.9 uncal um), Max = 30589 (-136.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:32:38.084 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30583, posNoise = 6, negNoise = 8
17-03-18 06:32:38.084 -07 000000382 INF: Z Motor: After move to -0.136782, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:38.084 -07 000000382 INF: Z Motor: Settle wait time = 1457 ms, measure time = 104 ms (allowed 150 ms), total time = 1561 ms
17-03-18 06:32:38.084 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:38.134 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 06:32:38.134 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:38.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:38.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:38.134 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:38.134 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:38.134 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:38.134 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:38.134 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 06:32:38.134 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:38.144 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:32:38.144 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:38.154 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:32:38.154 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:32:38.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:38.204 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:38.504 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:38.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:38.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:38.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:32:38.544 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:38.544 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:38.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 06:32:38.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:32:38.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:38.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:32:38.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:32:38.644 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:38.644 -07 000000437 INF: Autofocus start
17-03-18 06:32:38.644 -07 000000437 INF: MeasureProfile start
17-03-18 06:32:38.654 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:38.654 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:38.654 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:38.664 -07 000000437 INF: MeasureProfile done
17-03-18 06:32:38.664 -07 000000437 INF: X=-80  Z correction [um]=-0.3928285
17-03-18 06:32:38.664 -07 000000437 INF: Autofocus finished
17-03-18 06:32:38.854 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:38.854 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:32:38.854 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.13679503194261. ----------
17-03-18 06:32:38.854 -07 000000610 INF: Cycle	150	Tile	11	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:38.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28307, sync = True, waitForSettling = True)
17-03-18 06:32:38.864 -07 000000610 INF: Z Motor: Moving to -0.129581 mm, started at -0.136795 mm, distance = 7.21 um
17-03-18 06:32:38.864 -07 000000610 INF: FPGA: Xmit ZDACW 28307\n [Z Motor]
17-03-18 06:32:38.864 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:32:38.874 -07 000000610 INF: FPGA: 'ZDACW 28307' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:38.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:38.874 -07 000000382 INF: FPGA: Recv ZDACR 28307
17-03-18 06:32:38.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:38.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:39.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:39.034 -07 000000382 INF: FPGA: Recv ZSGSRD 29463
17-03-18 06:32:39.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:39.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:39.044 -07 000000382 INF: FPGA: Recv ZSGSRD 29463
17-03-18 06:32:39.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:39.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:39.054 -07 000000479 INF: FPGA: Recv ZSGSRD 29460
17-03-18 06:32:39.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:39.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:39.064 -07 000000480 INF: FPGA: Recv ZSGSRD 29459
17-03-18 06:32:39.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:39.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:39.074 -07 000000455 INF: FPGA: Recv ZSGSRD 29462
17-03-18 06:32:39.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:39.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:39.084 -07 000000480 INF: FPGA: Recv ZSGSRD 29462
17-03-18 06:32:39.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:39.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:39.094 -07 000000480 INF: FPGA: Recv ZSGSRD 29456
17-03-18 06:32:39.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:39.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:39.104 -07 000000480 INF: FPGA: Recv ZSGSRD 29459
17-03-18 06:32:39.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:39.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:39.114 -07 000000480 INF: FPGA: Recv ZSGSRD 29455
17-03-18 06:32:39.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:39.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:39.124 -07 000000447 INF: FPGA: Recv ZSGSRD 29462
17-03-18 06:32:39.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:39.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:39.134 -07 000000437 INF: FPGA: Recv ZPIEZORD 24919
17-03-18 06:32:39.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:39.144 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -10.0 V.
17-03-18 06:32:39.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29460 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29461 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29455 (-128.8 uncal um), Max = 29463 (-128.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:32:39.144 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29460, posNoise = 3, negNoise = 5
17-03-18 06:32:39.144 -07 000000610 INF: Z Motor: After move to -0.129581, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:39.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:32:39.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:39.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:39.144 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:39.144 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:39.144 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:39.144 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:39.144 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:39.144 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:39.144 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:32:39.144 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:39.144 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:32:39.144 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:39.154 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:32:39.154 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:39.154 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:32:39.154 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:39.164 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:32:39.164 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:32:39.164 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:32:39.164 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:32:39.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28484 150\n [Camera]
17-03-18 06:32:39.364 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:32:39.824 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:39.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:39.824 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:39.824 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:39.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:39.824 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:39.834 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:39.834 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:32:39.834 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:39.834 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:32:40.014 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28484 846
17-03-18 06:32:40.164 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:32:40.214 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:32:40.214 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:32:40.214 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:40.214 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:32:40.214 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:32:40.214 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:40.214 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:40.214 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:40.214 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:32:40.224 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:32:40.384 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:40.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:40.394 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:40.394 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:40.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:40.394 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:40.404 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:40.404 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:32:40.404 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:40.404 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 06:32:40.554 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.020806,
17-03-18 06:32:40.584 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:32:40.584 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:40.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28484 150' command took 2 ms to send, 1411 ms to get response, and 1417 ms overall
17-03-18 06:32:40.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:40.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.129580641707413. ------
17-03-18 06:32:40.584 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13620 mm
17-03-18 06:32:40.584 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:40.594 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:40.594 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29752, sync = True, waitForSettling = False)
17-03-18 06:32:40.594 -07 000000479 INF: Z Motor: Moving to -0.136196 mm, started at -0.129581 mm, distance = -6.62 um
17-03-18 06:32:40.594 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:32:40.594 -07 000000437 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 06:32:40.704 -07 000000479 INF: FPGA: Xmit ZDACW 29752\n [Z Motor]
17-03-18 06:32:40.704 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:40.704 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-18 06:32:40.714 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:40.714 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:32:40.714 -07 000000479 INF: FPGA: 'ZDACW 29752' command took 0 ms to send, 1 ms to get response, and 120 ms overall
17-03-18 06:32:40.714 -07 000000480 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:32:40.724 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 129 ms overall
17-03-18 06:32:40.724 -07 000000437 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:40.724 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:40.724 -07 000000437 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:40.724 -07 000000437 INF: Y Motor: Moving 1342 steps-18
17-03-18 06:32:40.734 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:40.734 -07 000000501 INF: FPGA: Recv ZDACR 29752
17-03-18 06:32:40.744 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:32:40.744 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:40.744 -07 000000479 INF: Z Motor: MoveAbsStepped took 149 ms (did NOT wait for settling yet))
17-03-18 06:32:40.794 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:32:40.794 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:32:40.794 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:40.794 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:32:40.794 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:32:40.794 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:40.794 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:40.794 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:40.794 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:32:40.804 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:32:40.924 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:40.924 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 06:32:41.114 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:32:41.114 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 06:32:41.174 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:41.174 -07 000000455 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:32:41.184 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:41.184 -07 000000437 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:41.184 -07 000000437 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 06:32:41.184 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-18 06:32:41.874 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:32:41.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:32:42.134 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:42.134 -07 000000479 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:32:42.144 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:42.144 -07 000000437 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:42.174 -07 000000437 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:42.174 -07 000000437 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:32:42.174 -07 000000437 INF: Y Motor: Moved to 69.0259 after 1582 ms (table move)
17-03-18 06:32:42.174 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136196 mm (DAC = 29752)
17-03-18 06:32:42.174 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:42.174 -07 000000487 INF: FPGA: Recv ZSGSRD 30496
17-03-18 06:32:42.184 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:32:42.184 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:42.184 -07 000000501 INF: FPGA: Recv ZSGSRD 30491
17-03-18 06:32:42.194 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:42.194 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:42.194 -07 000000512 INF: FPGA: Recv ZSGSRD 30484
17-03-18 06:32:42.204 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:42.204 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:42.204 -07 000000561 INF: FPGA: Recv ZSGSRD 30487
17-03-18 06:32:42.214 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:42.214 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:42.214 -07 000000626 INF: FPGA: Recv ZSGSRD 30482
17-03-18 06:32:42.224 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:42.224 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:42.224 -07 000000455 INF: FPGA: Recv ZSGSRD 30493
17-03-18 06:32:42.234 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:42.234 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:42.234 -07 000000502 INF: FPGA: Recv ZSGSRD 30498
17-03-18 06:32:42.244 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:42.244 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:42.244 -07 000000501 INF: FPGA: Recv ZSGSRD 30490
17-03-18 06:32:42.254 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:42.254 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:42.254 -07 000000437 INF: FPGA: Recv ZSGSRD 30492
17-03-18 06:32:42.264 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:42.264 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:42.264 -07 000000487 INF: FPGA: Recv ZSGSRD 30490
17-03-18 06:32:42.274 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:42.274 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:42.274 -07 000000479 INF: FPGA: Recv ZPIEZORD 26255
17-03-18 06:32:42.284 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:42.284 -07 000000591 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.540 V. Piezo Error = -9.3 V.
17-03-18 06:32:42.284 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30490 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30490 (-135.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30482 (-135.4 uncal um), Max = 30498 (-135.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:32:42.284 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30490, posNoise = 8, negNoise = 8
17-03-18 06:32:42.284 -07 000000591 INF: Z Motor: After move to -0.136196, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:42.284 -07 000000591 INF: Z Motor: Settle wait time = 1586 ms, measure time = 104 ms (allowed 150 ms), total time = 1690 ms
17-03-18 06:32:42.284 -07 000000591 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:42.334 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1742 ms
17-03-18 06:32:42.334 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:42.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:42.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:42.334 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:42.334 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:42.334 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:42.334 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:42.334 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:42.334 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:42.344 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:42.344 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:42.354 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:32:42.354 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:32:42.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:42.404 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:42.704 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:42.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:42.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:42.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:32:42.734 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:42.744 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:42.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:32:42.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:32:42.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:42.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:32:42.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:32:42.844 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:42.844 -07 000000382 INF: Autofocus start
17-03-18 06:32:42.844 -07 000000382 INF: MeasureProfile start
17-03-18 06:32:42.854 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:42.854 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 06:32:42.854 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:42.854 -07 000000382 INF: MeasureProfile done
17-03-18 06:32:42.854 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:32:42.854 -07 000000382 INF: Autofocus finished
17-03-18 06:32:43.054 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:43.054 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:32:43.054 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.136197580213427. ----------
17-03-18 06:32:43.054 -07 000000610 INF: Cycle	150	Tile	12	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:43.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28247, sync = True, waitForSettling = True)
17-03-18 06:32:43.064 -07 000000610 INF: Z Motor: Moving to -0.129306 mm, started at -0.136198 mm, distance = 6.89 um
17-03-18 06:32:43.064 -07 000000610 INF: FPGA: Xmit ZDACW 28247\n [Z Motor]
17-03-18 06:32:43.064 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:32:43.074 -07 000000610 INF: FPGA: 'ZDACW 28247' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:32:43.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:43.074 -07 000000382 INF: FPGA: Recv ZDACR 28247
17-03-18 06:32:43.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:43.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:43.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:43.234 -07 000000591 INF: FPGA: Recv ZSGSRD 29423
17-03-18 06:32:43.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:43.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:43.244 -07 000000382 INF: FPGA: Recv ZSGSRD 29419
17-03-18 06:32:43.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:43.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:43.254 -07 000000591 INF: FPGA: Recv ZSGSRD 29417
17-03-18 06:32:43.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:43.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:43.264 -07 000000592 INF: FPGA: Recv ZSGSRD 29413
17-03-18 06:32:43.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:43.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:43.274 -07 000000606 INF: FPGA: Recv ZSGSRD 29416
17-03-18 06:32:43.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:43.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:43.284 -07 000000501 INF: FPGA: Recv ZSGSRD 29419
17-03-18 06:32:43.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:43.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:43.294 -07 000000606 INF: FPGA: Recv ZSGSRD 29413
17-03-18 06:32:43.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:43.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:43.304 -07 000000382 INF: FPGA: Recv ZSGSRD 29424
17-03-18 06:32:43.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:32:43.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:43.314 -07 000000437 INF: FPGA: Recv ZSGSRD 29417
17-03-18 06:32:43.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:43.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:43.324 -07 000000479 INF: FPGA: Recv ZSGSRD 29414
17-03-18 06:32:43.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:43.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:43.334 -07 000000437 INF: FPGA: Recv ZPIEZORD 24888
17-03-18 06:32:43.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:43.344 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.310 V. Piezo Error = -9.9 V.
17-03-18 06:32:43.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29418 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29417 (-128.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29413 (-128.5 uncal um), Max = 29424 (-128.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:32:43.344 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29418, posNoise = 6, negNoise = 5
17-03-18 06:32:43.344 -07 000000610 INF: Z Motor: After move to -0.129306, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:43.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:32:43.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:43.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:43.344 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:43.344 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:43.344 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:43.344 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:43.344 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:43.344 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:43.344 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:43.344 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:43.344 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:32:43.344 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:43.344 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:32:43.344 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:43.344 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:32:43.344 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:43.354 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:32:43.354 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:32:43.354 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:32:43.354 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:32:43.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28424 150\n [Camera]
17-03-18 06:32:43.564 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:32:44.024 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:44.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:44.024 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:44.024 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:44.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:44.024 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:44.034 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:44.034 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:32:44.034 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:44.034 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:32:44.214 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28424 846
17-03-18 06:32:44.374 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:32:44.404 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:32:44.404 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:32:44.404 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:44.414 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:32:44.414 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:32:44.414 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:44.414 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:44.414 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:32:44.414 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:44.424 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:32:44.584 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:44.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:44.594 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:44.594 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:44.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:44.594 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:44.594 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:44.594 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:44.594 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) start.
17-03-18 06:32:44.594 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:32:44.784 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:32:44.784 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:44.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28424 150' command took 2 ms to send, 1411 ms to get response, and 1418 ms overall
17-03-18 06:32:44.784 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:44.784 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.129310824797459. ------
17-03-18 06:32:44.784 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:44.784 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13575 mm
17-03-18 06:32:44.784 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:44.794 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:44.794 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:32:44.794 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:32:44.794 -07 000000487 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 06:32:44.794 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:44.794 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29654, sync = True, waitForSettling = False)
17-03-18 06:32:44.794 -07 000000479 INF: Z Motor: Moving to -0.135747 mm, started at -0.129311 mm, distance = -6.44 um
17-03-18 06:32:44.794 -07 000000502 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:32:44.804 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:32:44.804 -07 000000487 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:44.804 -07 000000487 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:44.804 -07 000000487 INF: Y Motor: Moving 1355 steps-34
17-03-18 06:32:44.804 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:44.814 -07 000000479 INF: FPGA: Xmit ZDACW 29654\n [Z Motor]
17-03-18 06:32:44.814 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:32:44.824 -07 000000479 INF: FPGA: 'ZDACW 29654' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:32:44.824 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:44.834 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:44.834 -07 000000502 INF: FPGA: Recv ZDACR 29654
17-03-18 06:32:44.844 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:32:44.844 -07 000000479 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 06:32:44.984 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 06:32:44.984 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:32:44.984 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:44.984 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:44.994 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:32:44.994 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:32:44.994 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:44.994 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:32:44.994 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:44.994 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:32:45.004 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:45.004 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 06:32:45.194 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:32:45.194 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 06:32:45.254 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:45.254 -07 000000502 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:32:45.264 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:32:45.264 -07 000000487 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:45.264 -07 000000487 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:32:45.264 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.127 mm/sec
17-03-18 06:32:45.914 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.037119,
17-03-18 06:32:46.214 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:46.214 -07 000000382 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:32:46.224 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:46.224 -07 000000487 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:46.254 -07 000000487 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:46.254 -07 000000487 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:32:46.254 -07 000000487 INF: Y Motor: Moved to 69.8623 after 1463 ms (table move)
17-03-18 06:32:46.264 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135747 mm (DAC = 29654)
17-03-18 06:32:46.274 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:46.274 -07 000000501 INF: FPGA: Recv ZSGSRD 30421
17-03-18 06:32:46.284 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:32:46.284 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:46.284 -07 000000501 INF: FPGA: Recv ZSGSRD 30414
17-03-18 06:32:46.294 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:46.294 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:46.294 -07 000000501 INF: FPGA: Recv ZSGSRD 30416
17-03-18 06:32:46.304 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:46.304 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:46.304 -07 000000501 INF: FPGA: Recv ZSGSRD 30424
17-03-18 06:32:46.314 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:46.314 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:46.314 -07 000000501 INF: FPGA: Recv ZSGSRD 30422
17-03-18 06:32:46.324 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:46.324 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:46.324 -07 000000501 INF: FPGA: Recv ZSGSRD 30425
17-03-18 06:32:46.334 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:46.334 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:46.334 -07 000000501 INF: FPGA: Recv ZSGSRD 30420
17-03-18 06:32:46.344 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:46.344 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:46.344 -07 000000487 INF: FPGA: Recv ZSGSRD 30424
17-03-18 06:32:46.354 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:46.354 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:46.354 -07 000000501 INF: FPGA: Recv ZSGSRD 30427
17-03-18 06:32:46.364 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:46.364 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:46.364 -07 000000479 INF: FPGA: Recv ZSGSRD 30415
17-03-18 06:32:46.374 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:46.374 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:46.374 -07 000000437 INF: FPGA: Recv ZPIEZORD 26187
17-03-18 06:32:46.384 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:46.384 -07 000000591 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.525 V. Piezo Error = -9.3 V.
17-03-18 06:32:46.384 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30421 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30422 (-135.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30414 (-134.9 uncal um), Max = 30427 (-135.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:32:46.384 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30421, posNoise = 6, negNoise = 7
17-03-18 06:32:46.384 -07 000000591 INF: Z Motor: After move to -0.135747, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:46.384 -07 000000591 INF: Z Motor: Settle wait time = 1468 ms, measure time = 119 ms (allowed 150 ms), total time = 1587 ms
17-03-18 06:32:46.384 -07 000000591 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:46.424 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 06:32:46.424 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:46.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:46.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:46.424 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:46.424 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:46.424 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:46.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:46.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:46.424 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:46.434 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:32:46.434 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:46.434 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:32:46.434 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:32:46.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:46.484 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:46.784 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:46.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:46.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:46.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2736656032, 0x0, 559484976) start.
17-03-18 06:32:46.824 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:46.824 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:46.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:32:46.874 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:32:46.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2736656032, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:32:46.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:46.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:32:46.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:32:46.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:32:46.924 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:46.924 -07 000000502 INF: Autofocus start
17-03-18 06:32:46.924 -07 000000502 INF: MeasureProfile start
17-03-18 06:32:46.924 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:46.934 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:46.934 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:46.934 -07 000000502 INF: MeasureProfile done
17-03-18 06:32:46.934 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:32:46.934 -07 000000502 INF: Autofocus finished
17-03-18 06:32:47.134 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:47.134 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:32:47.134 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.135754309575645. ----------
17-03-18 06:32:47.134 -07 000000610 INF: Cycle	150	Tile	13	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:47.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28162, sync = True, waitForSettling = True)
17-03-18 06:32:47.144 -07 000000610 INF: Z Motor: Moving to -0.128917 mm, started at -0.135754 mm, distance = 6.84 um
17-03-18 06:32:47.144 -07 000000610 INF: FPGA: Xmit ZDACW 28162\n [Z Motor]
17-03-18 06:32:47.144 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:32:47.154 -07 000000610 INF: FPGA: 'ZDACW 28162' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:32:47.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:47.154 -07 000000502 INF: FPGA: Recv ZDACR 28162
17-03-18 06:32:47.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:47.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:47.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:47.314 -07 000000479 INF: FPGA: Recv ZSGSRD 29359
17-03-18 06:32:47.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:47.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:47.324 -07 000000479 INF: FPGA: Recv ZSGSRD 29367
17-03-18 06:32:47.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:47.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:47.334 -07 000000437 INF: FPGA: Recv ZSGSRD 29353
17-03-18 06:32:47.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:47.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:47.344 -07 000000437 INF: FPGA: Recv ZSGSRD 29357
17-03-18 06:32:47.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:47.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:47.354 -07 000000437 INF: FPGA: Recv ZSGSRD 29359
17-03-18 06:32:47.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:47.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:47.364 -07 000000437 INF: FPGA: Recv ZSGSRD 29359
17-03-18 06:32:47.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:47.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:47.374 -07 000000606 INF: FPGA: Recv ZSGSRD 29357
17-03-18 06:32:47.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:47.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:47.384 -07 000000437 INF: FPGA: Recv ZSGSRD 29358
17-03-18 06:32:47.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:47.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:47.394 -07 000000437 INF: FPGA: Recv ZSGSRD 29362
17-03-18 06:32:47.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:47.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:47.404 -07 000000487 INF: FPGA: Recv ZSGSRD 29358
17-03-18 06:32:47.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:47.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:47.414 -07 000000479 INF: FPGA: Recv ZPIEZORD 24810
17-03-18 06:32:47.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:47.424 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.297 V. Piezo Error = -10.0 V.
17-03-18 06:32:47.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29359 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29358 (-128.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29353 (-128.1 uncal um), Max = 29367 (-128.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:32:47.424 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29359, posNoise = 8, negNoise = 6
17-03-18 06:32:47.424 -07 000000610 INF: Z Motor: After move to -0.128917, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:47.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:32:47.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:47.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:47.424 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:47.424 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:47.424 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:47.424 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:47.424 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:47.424 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:47.424 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:47.424 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:47.424 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:32:47.424 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:47.434 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:47.434 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:47.434 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:32:47.434 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:47.444 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 06:32:47.444 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:32:47.444 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:32:47.444 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:32:47.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28338 150\n [Camera]
17-03-18 06:32:47.654 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-18 06:32:48.114 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:48.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:48.114 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:48.114 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:48.114 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:32:48.114 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:48.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:48.114 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:48.114 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:48.114 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:32:48.304 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28338 846
17-03-18 06:32:48.454 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:32:48.494 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:32:48.494 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:32:48.494 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:48.494 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:48.504 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:32:48.504 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:32:48.504 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:48.504 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:32:48.504 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:48.504 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:32:48.674 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:48.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:48.674 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:48.674 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:48.674 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:32:48.674 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:48.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:48.684 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:48.684 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:48.684 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:32:48.874 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-18 06:32:48.874 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:48.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28338 150' command took 2 ms to send, 1411 ms to get response, and 1420 ms overall
17-03-18 06:32:48.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:48.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.128931796281095. ------
17-03-18 06:32:48.994 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:48.994 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13517 mm
17-03-18 06:32:48.994 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:48.994 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:48.994 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29527, sync = True, waitForSettling = False)
17-03-18 06:32:48.994 -07 000000437 INF: Z Motor: Moving to -0.135166 mm, started at -0.128932 mm, distance = -6.23 um
17-03-18 06:32:48.994 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:32:48.994 -07 000000561 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 06:32:49.004 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 115 ms to send, 0 ms to get response, and 123 ms overall
17-03-18 06:32:49.004 -07 000000437 INF: FPGA: Xmit ZDACW 29527\n [Z Motor]
17-03-18 06:32:49.004 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:32:49.014 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:49.014 -07 000000437 INF: FPGA: 'ZDACW 29527' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:32:49.014 -07 000000501 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:32:49.024 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:49.024 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:32:49.024 -07 000000561 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:49.024 -07 000000561 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:49.024 -07 000000561 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:32:49.034 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:49.034 -07 000000501 INF: FPGA: Recv ZDACR 29527
17-03-18 06:32:49.044 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:32:49.044 -07 000000437 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 06:32:49.044 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:49.074 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:32:49.074 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:32:49.074 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:49.074 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:32:49.074 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:32:49.074 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:49.084 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:49.084 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:32:49.084 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:32:49.084 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:32:49.224 -07 000000487 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:49.224 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:32:49.414 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 06:32:49.414 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:32:49.464 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:49.474 -07 000000502 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:32:49.474 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:32:49.474 -07 000000561 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:49.474 -07 000000561 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:32:49.474 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 06:32:50.424 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:50.424 -07 000000487 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:32:50.434 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:50.434 -07 000000561 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:50.464 -07 000000561 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:50.464 -07 000000561 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:32:50.464 -07 000000561 INF: Y Motor: Moved to 70.6875 after 1466 ms (table move)
17-03-18 06:32:50.464 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135166 mm (DAC = 29527)
17-03-18 06:32:50.464 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:50.474 -07 000000447 INF: FPGA: Recv ZSGSRD 30330
17-03-18 06:32:50.474 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:32:50.474 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:50.474 -07 000000487 INF: FPGA: Recv ZSGSRD 30333
17-03-18 06:32:50.484 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:50.484 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:50.484 -07 000000479 INF: FPGA: Recv ZSGSRD 30327
17-03-18 06:32:50.494 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:50.494 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:50.494 -07 000000561 INF: FPGA: Recv ZSGSRD 30327
17-03-18 06:32:50.504 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:50.504 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:50.504 -07 000000501 INF: FPGA: Recv ZSGSRD 30320
17-03-18 06:32:50.514 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:50.514 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:50.514 -07 000000487 INF: FPGA: Recv ZSGSRD 30337
17-03-18 06:32:50.524 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:50.524 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:50.524 -07 000000437 INF: FPGA: Recv ZSGSRD 30333
17-03-18 06:32:50.534 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:50.534 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:50.534 -07 000000561 INF: FPGA: Recv ZSGSRD 30333
17-03-18 06:32:50.544 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:50.544 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:50.544 -07 000000479 INF: FPGA: Recv ZSGSRD 30335
17-03-18 06:32:50.554 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:50.554 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:50.554 -07 000000501 INF: FPGA: Recv ZSGSRD 30334
17-03-18 06:32:50.564 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:50.564 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:50.564 -07 000000437 INF: FPGA: Recv ZPIEZORD 26116
17-03-18 06:32:50.574 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:50.574 -07 000000592 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.506 V. Piezo Error = -9.3 V.
17-03-18 06:32:50.574 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30331 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30333 (-134.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30320 (-134.3 uncal um), Max = 30337 (-134.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:32:50.574 -07 000000592 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30331, posNoise = 6, negNoise = 11
17-03-18 06:32:50.574 -07 000000592 INF: Z Motor: After move to -0.135166, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:50.574 -07 000000592 INF: Z Motor: Settle wait time = 1469 ms, measure time = 109 ms (allowed 150 ms), total time = 1578 ms
17-03-18 06:32:50.574 -07 000000592 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:50.624 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 06:32:50.624 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:50.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:50.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:50.624 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:50.624 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:50.624 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:50.624 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:50.624 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:50.624 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:50.634 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:50.634 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:50.634 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:32:50.634 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:32:50.644 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:50.684 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:50.984 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:50.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:50.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:50.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:32:51.024 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:51.024 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:51.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:32:51.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:32:51.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:51.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:32:51.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:32:51.124 -07 000000606 INF: Autofocus start
17-03-18 06:32:51.124 -07 000000606 INF: MeasureProfile start
17-03-18 06:32:51.124 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:51.124 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:51.134 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:51.134 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:51.134 -07 000000606 INF: MeasureProfile done
17-03-18 06:32:51.134 -07 000000606 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:32:51.134 -07 000000606 INF: Autofocus finished
17-03-18 06:32:51.294 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 4.016692,
17-03-18 06:32:51.334 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:51.334 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:32:51.334 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.135176130482887. ----------
17-03-18 06:32:51.344 -07 000000610 INF: Cycle	150	Tile	14	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:51.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28051, sync = True, waitForSettling = True)
17-03-18 06:32:51.344 -07 000000610 INF: Z Motor: Moving to -0.128409 mm, started at -0.135176 mm, distance = 6.77 um
17-03-18 06:32:51.344 -07 000000610 INF: FPGA: Xmit ZDACW 28051\n [Z Motor]
17-03-18 06:32:51.344 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:32:51.354 -07 000000610 INF: FPGA: 'ZDACW 28051' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:32:51.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:51.354 -07 000000606 INF: FPGA: Recv ZDACR 28051
17-03-18 06:32:51.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:51.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:51.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:51.514 -07 000000592 INF: FPGA: Recv ZSGSRD 29277
17-03-18 06:32:51.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:51.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:51.524 -07 000000606 INF: FPGA: Recv ZSGSRD 29283
17-03-18 06:32:51.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:51.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:51.534 -07 000000479 INF: FPGA: Recv ZSGSRD 29276
17-03-18 06:32:51.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:51.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:51.544 -07 000000606 INF: FPGA: Recv ZSGSRD 29271
17-03-18 06:32:51.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:51.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:51.554 -07 000000479 INF: FPGA: Recv ZSGSRD 29283
17-03-18 06:32:51.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:51.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:51.564 -07 000000501 INF: FPGA: Recv ZSGSRD 29274
17-03-18 06:32:51.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:51.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:51.574 -07 000000437 INF: FPGA: Recv ZSGSRD 29282
17-03-18 06:32:51.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:51.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:51.584 -07 000000502 INF: FPGA: Recv ZSGSRD 29282
17-03-18 06:32:51.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:51.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:51.614 -07 000000479 INF: FPGA: Recv ZSGSRD 29276
17-03-18 06:32:51.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:32:51.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:51.634 -07 000000487 INF: FPGA: Recv ZSGSRD 29276
17-03-18 06:32:51.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:32:51.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:51.644 -07 000000561 INF: FPGA: Recv ZPIEZORD 24744
17-03-18 06:32:51.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:51.654 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.280 V. Piezo Error = -9.9 V.
17-03-18 06:32:51.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29278 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29276 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29271 (-127.6 uncal um), Max = 29283 (-127.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:32:51.654 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29278, posNoise = 5, negNoise = 7
17-03-18 06:32:51.654 -07 000000610 INF: Z Motor: After move to -0.128409, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:51.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 309 ms)
17-03-18 06:32:51.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:51.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:51.654 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:51.654 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:51.654 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:51.654 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:51.654 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:51.654 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:51.654 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:32:51.654 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:51.654 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:51.654 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:51.664 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:51.664 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:51.664 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:32:51.664 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:51.674 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 06:32:51.674 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:32:51.674 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:32:51.674 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:32:51.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28228 150\n [Camera]
17-03-18 06:32:51.874 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:32:51.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:32:51.874 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:32:52.334 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:52.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:52.344 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:52.344 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:52.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:52.344 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:52.344 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:52.344 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:32:52.344 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:52.344 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:32:52.534 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28228 846
17-03-18 06:32:52.684 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:32:52.734 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:32:52.734 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:32:52.734 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:52.734 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:32:52.734 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:32:52.734 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:52.734 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:52.734 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:32:52.744 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:52.744 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:32:52.904 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:52.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:52.904 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:52.904 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:52.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:52.904 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:52.914 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:52.914 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 06:32:52.914 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:52.914 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:32:53.094 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:32:53.094 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:53.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28228 150' command took 2 ms to send, 1406 ms to get response, and 1417 ms overall
17-03-18 06:32:53.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:53.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.128411435097612. ------
17-03-18 06:32:53.104 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:53.104 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13521 mm
17-03-18 06:32:53.104 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:53.104 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:32:53.104 -07 000000561 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 06:32:53.104 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:53.104 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 29536, sync = True, waitForSettling = False)
17-03-18 06:32:53.104 -07 000000479 INF: Z Motor: Moving to -0.135207 mm, started at -0.128411 mm, distance = -6.80 um
17-03-18 06:32:53.114 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:53.114 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:53.114 -07 000000606 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:32:53.124 -07 000000479 INF: FPGA: Xmit ZDACW 29536\n [Z Motor]
17-03-18 06:32:53.124 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:32:53.124 -07 000000561 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:53.124 -07 000000561 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:53.124 -07 000000561 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:32:53.244 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:53.244 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:32:53.244 -07 000000479 INF: FPGA: 'ZDACW 29536' command took 0 ms to send, 0 ms to get response, and 136 ms overall
17-03-18 06:32:53.254 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:53.264 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:53.264 -07 000000501 INF: FPGA: Recv ZDACR 29536
17-03-18 06:32:53.274 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:32:53.274 -07 000000479 INF: Z Motor: MoveAbsStepped took 165 ms (did NOT wait for settling yet))
17-03-18 06:32:53.314 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:32:53.314 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:32:53.314 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:53.314 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:32:53.314 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:32:53.314 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:53.314 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:53.314 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:53.314 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:32:53.324 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:32:53.444 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:53.444 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 333 ms overall
17-03-18 06:32:53.624 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 06:32:53.624 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:32:53.684 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:53.684 -07 000000501 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:32:53.694 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:32:53.694 -07 000000561 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:53.694 -07 000000561 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:32:53.694 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 508 ms, distance = 0.845 mm, average velocity = 1.664 mm/sec
17-03-18 06:32:54.644 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:54.644 -07 000000512 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:32:54.654 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:54.654 -07 000000561 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:54.684 -07 000000561 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:54.684 -07 000000561 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:32:54.684 -07 000000561 INF: Y Motor: Moved to 71.5176 after 1579 ms (table move)
17-03-18 06:32:54.684 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135207 mm (DAC = 29536)
17-03-18 06:32:54.684 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:54.694 -07 000000502 INF: FPGA: Recv ZSGSRD 30336
17-03-18 06:32:54.694 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:32:54.694 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:54.694 -07 000000590 INF: FPGA: Recv ZSGSRD 30335
17-03-18 06:32:54.704 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:54.704 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:54.704 -07 000000487 INF: FPGA: Recv ZSGSRD 30336
17-03-18 06:32:54.714 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:54.714 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:54.714 -07 000000438 INF: FPGA: Recv ZSGSRD 30344
17-03-18 06:32:54.724 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:54.724 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:54.724 -07 000000487 INF: FPGA: Recv ZSGSRD 30328
17-03-18 06:32:54.734 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:54.734 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:54.734 -07 000000512 INF: FPGA: Recv ZSGSRD 30335
17-03-18 06:32:54.744 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:54.744 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:54.744 -07 000000502 INF: FPGA: Recv ZSGSRD 30338
17-03-18 06:32:54.754 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:54.754 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:54.754 -07 000000561 INF: FPGA: Recv ZSGSRD 30333
17-03-18 06:32:54.764 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:54.764 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:54.764 -07 000000502 INF: FPGA: Recv ZSGSRD 30340
17-03-18 06:32:54.774 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:54.774 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:54.774 -07 000000561 INF: FPGA: Recv ZSGSRD 30339
17-03-18 06:32:54.784 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:54.784 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:54.784 -07 000000501 INF: FPGA: Recv ZPIEZORD 26166
17-03-18 06:32:54.794 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:54.794 -07 000000592 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.507 V. Piezo Error = -9.2 V.
17-03-18 06:32:54.794 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30336 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30336 (-134.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30328 (-134.4 uncal um), Max = 30344 (-134.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:32:54.794 -07 000000592 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30336, posNoise = 8, negNoise = 8
17-03-18 06:32:54.794 -07 000000592 INF: Z Motor: After move to -0.135207, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:54.794 -07 000000592 INF: Z Motor: Settle wait time = 1582 ms, measure time = 103 ms (allowed 150 ms), total time = 1685 ms
17-03-18 06:32:54.794 -07 000000592 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:54.844 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1739 ms
17-03-18 06:32:54.844 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:54.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:54.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:54.844 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:54.844 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:54.844 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:54.844 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:54.844 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:32:54.844 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:54.854 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:32:54.854 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:54.864 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:32:54.864 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:32:54.864 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:54.904 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:55.204 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:55.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:55.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:55.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:32:55.244 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:55.244 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:55.244 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:32:55.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:32:55.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:55.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:32:55.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:32:55.344 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:55.344 -07 000000590 INF: Autofocus start
17-03-18 06:32:55.344 -07 000000590 INF: MeasureProfile start
17-03-18 06:32:55.344 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:55.354 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:32:55.354 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:55.354 -07 000000590 INF: MeasureProfile done
17-03-18 06:32:55.354 -07 000000590 INF: X=-64  Z correction [um]=-0.3149434
17-03-18 06:32:55.354 -07 000000590 INF: Autofocus finished
17-03-18 06:32:55.554 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:55.554 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 06:32:55.564 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.135208251543595. ----------
17-03-18 06:32:55.564 -07 000000610 INF: Cycle	150	Tile	15	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:55.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27980, sync = True, waitForSettling = True)
17-03-18 06:32:55.564 -07 000000610 INF: Z Motor: Moving to -0.128084 mm, started at -0.135208 mm, distance = 7.12 um
17-03-18 06:32:55.564 -07 000000610 INF: FPGA: Xmit ZDACW 27980\n [Z Motor]
17-03-18 06:32:55.564 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:32:55.574 -07 000000610 INF: FPGA: 'ZDACW 27980' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:55.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:55.574 -07 000000487 INF: FPGA: Recv ZDACR 27980
17-03-18 06:32:55.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:55.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:55.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:55.734 -07 000000501 INF: FPGA: Recv ZSGSRD 29228
17-03-18 06:32:55.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:55.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:55.744 -07 000000592 INF: FPGA: Recv ZSGSRD 29230
17-03-18 06:32:55.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:55.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:55.754 -07 000000501 INF: FPGA: Recv ZSGSRD 29226
17-03-18 06:32:55.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:55.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:55.764 -07 000000502 INF: FPGA: Recv ZSGSRD 29224
17-03-18 06:32:55.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:55.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:55.774 -07 000000487 INF: FPGA: Recv ZSGSRD 29230
17-03-18 06:32:55.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:55.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:55.784 -07 000000502 INF: FPGA: Recv ZSGSRD 29226
17-03-18 06:32:55.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:55.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:55.794 -07 000000501 INF: FPGA: Recv ZSGSRD 29234
17-03-18 06:32:55.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:55.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:55.804 -07 000000438 INF: FPGA: Recv ZSGSRD 29229
17-03-18 06:32:55.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:55.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:55.814 -07 000000502 INF: FPGA: Recv ZSGSRD 29227
17-03-18 06:32:55.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:55.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:55.824 -07 000000438 INF: FPGA: Recv ZSGSRD 29228
17-03-18 06:32:55.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:55.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:55.834 -07 000000501 INF: FPGA: Recv ZPIEZORD 24700
17-03-18 06:32:55.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:55.844 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -9.9 V.
17-03-18 06:32:55.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29228 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29228 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29224 (-127.3 uncal um), Max = 29234 (-127.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:32:55.844 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29228, posNoise = 6, negNoise = 4
17-03-18 06:32:55.844 -07 000000610 INF: Z Motor: After move to -0.128084, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:55.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:32:55.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:55.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:55.844 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:55.844 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:55.844 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:55.844 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:55.844 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:55.844 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:55.844 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:32:55.844 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:55.854 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:32:55.854 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:55.854 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:32:55.854 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:55.854 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:32:55.854 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:55.864 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:32:55.864 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:32:55.864 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:32:55.864 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:32:55.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28157 150\n [Camera]
17-03-18 06:32:56.064 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:32:56.524 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:32:56.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:32:56.524 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:56.534 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:32:56.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:32:56.534 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:56.534 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:56.534 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:32:56.534 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:56.534 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:32:56.654 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.990831,
17-03-18 06:32:56.724 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28157 846
17-03-18 06:32:56.874 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:32:56.874 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:32:56.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:32:56.934 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:32:56.934 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:32:56.934 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:56.934 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:32:56.934 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:32:56.934 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:56.944 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:56.944 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:56.944 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:32:56.944 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:32:57.094 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:32:57.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:32:57.094 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:32:57.094 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:32:57.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:32:57.094 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:32:57.094 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:32:57.094 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:32:57.094 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) start.
17-03-18 06:32:57.094 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:32:57.284 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:32:57.284 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:32:57.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28157 150' command took 2 ms to send, 1414 ms to get response, and 1420 ms overall
17-03-18 06:32:57.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:32:57.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.128090224490524. ------
17-03-18 06:32:57.294 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13452 mm
17-03-18 06:32:57.294 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:32:57.294 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:57.294 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:32:57.294 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 06:32:57.294 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29385, sync = True, waitForSettling = False)
17-03-18 06:32:57.294 -07 000000501 INF: Z Motor: Moving to -0.134516 mm, started at -0.128090 mm, distance = -6.43 um
17-03-18 06:32:57.294 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:57.304 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:57.304 -07 000000501 INF: FPGA: Xmit ZDACW 29385\n [Z Motor]
17-03-18 06:32:57.304 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 06:32:57.314 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:57.314 -07 000000501 INF: FPGA: 'ZDACW 29385' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:32:57.314 -07 000000479 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:32:57.324 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:32:57.324 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:32:57.324 -07 000000512 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:57.324 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:32:57.324 -07 000000512 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:32:57.334 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:57.334 -07 000000591 INF: FPGA: Recv ZDACR 29385
17-03-18 06:32:57.344 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:32:57.344 -07 000000501 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 06:32:57.344 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:32:57.484 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:32:57.484 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:32:57.484 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:57.484 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:32:57.494 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:32:57.494 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:32:57.494 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:57.494 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:32:57.494 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:32:57.494 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:32:57.524 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:32:57.524 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:32:57.714 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:32:57.714 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 06:32:57.774 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:57.774 -07 000000561 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:32:57.784 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:57.784 -07 000000512 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:57.784 -07 000000512 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:32:57.784 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 06:32:58.734 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:32:58.734 -07 000000479 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:32:58.744 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:58.744 -07 000000512 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:32:58.774 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:32:58.774 -07 000000512 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:32:58.774 -07 000000512 INF: Y Motor: Moved to 72.3481 after 1476 ms (table move)
17-03-18 06:32:58.774 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134516 mm (DAC = 29385)
17-03-18 06:32:58.774 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:58.774 -07 000000437 INF: FPGA: Recv ZSGSRD 30230
17-03-18 06:32:58.784 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:32:58.784 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:58.784 -07 000000487 INF: FPGA: Recv ZSGSRD 30228
17-03-18 06:32:58.794 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:58.794 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:58.804 -07 000000479 INF: FPGA: Recv ZSGSRD 30239
17-03-18 06:32:58.804 -07 000000438 INF: FPGA: 'ZSGSRD' command took 7 ms to send, 1 ms to get response, and 10 ms overall
17-03-18 06:32:58.804 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:58.804 -07 000000561 INF: FPGA: Recv ZSGSRD 30229
17-03-18 06:32:58.814 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:32:58.814 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:58.814 -07 000000561 INF: FPGA: Recv ZSGSRD 30226
17-03-18 06:32:58.824 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:58.824 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:58.824 -07 000000561 INF: FPGA: Recv ZSGSRD 30232
17-03-18 06:32:58.834 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:58.834 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:58.834 -07 000000561 INF: FPGA: Recv ZSGSRD 30233
17-03-18 06:32:58.844 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:58.844 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:58.844 -07 000000591 INF: FPGA: Recv ZSGSRD 30232
17-03-18 06:32:58.854 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:58.854 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:58.854 -07 000000561 INF: FPGA: Recv ZSGSRD 30221
17-03-18 06:32:58.864 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:58.864 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:58.864 -07 000000561 INF: FPGA: Recv ZSGSRD 30221
17-03-18 06:32:58.874 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:58.874 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:58.874 -07 000000561 INF: FPGA: Recv ZPIEZORD 26006
17-03-18 06:32:58.884 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:58.884 -07 000000438 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -9.3 V.
17-03-18 06:32:58.884 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30229 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30230 (-133.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30221 (-133.7 uncal um), Max = 30239 (-133.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:32:58.884 -07 000000438 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30229, posNoise = 10, negNoise = 8
17-03-18 06:32:58.884 -07 000000438 INF: Z Motor: After move to -0.134516, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:58.884 -07 000000438 INF: Z Motor: Settle wait time = 1479 ms, measure time = 104 ms (allowed 150 ms), total time = 1583 ms
17-03-18 06:32:58.884 -07 000000438 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:32:58.934 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 06:32:58.934 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:32:58.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:58.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:58.934 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:58.934 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:58.934 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:32:58.934 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:58.934 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:32:58.934 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:32:58.944 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:32:58.944 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:32:58.944 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:32:58.944 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:32:58.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:32:58.994 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:32:59.294 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:32:59.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:32:59.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:32:59.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2736656032, 0x0, 559484976) start.
17-03-18 06:32:59.334 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:32:59.334 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 06:32:59.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:32:59.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2736656032, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:32:59.414 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:32:59.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:32:59.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:32:59.434 -07 000000512 INF: Autofocus start
17-03-18 06:32:59.434 -07 000000512 INF: MeasureProfile start
17-03-18 06:32:59.434 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:32:59.444 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:32:59.444 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:32:59.444 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:32:59.444 -07 000000512 INF: MeasureProfile done
17-03-18 06:32:59.444 -07 000000512 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:32:59.444 -07 000000512 INF: Autofocus finished
17-03-18 06:32:59.644 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:32:59.644 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:32:59.644 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.134520860844427. ----------
17-03-18 06:32:59.644 -07 000000610 INF: Cycle	150	Tile	16	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:32:59.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27880, sync = True, waitForSettling = True)
17-03-18 06:32:59.654 -07 000000610 INF: Z Motor: Moving to -0.127626 mm, started at -0.134521 mm, distance = 6.89 um
17-03-18 06:32:59.654 -07 000000610 INF: FPGA: Xmit ZDACW 27880\n [Z Motor]
17-03-18 06:32:59.654 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 06:32:59.664 -07 000000610 INF: FPGA: 'ZDACW 27880' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:32:59.664 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:32:59.664 -07 000000479 INF: FPGA: Recv ZDACR 27880
17-03-18 06:32:59.674 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:59.674 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:32:59.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:59.824 -07 000000487 INF: FPGA: Recv ZSGSRD 29154
17-03-18 06:32:59.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:32:59.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:59.834 -07 000000479 INF: FPGA: Recv ZSGSRD 29157
17-03-18 06:32:59.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:59.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:59.844 -07 000000487 INF: FPGA: Recv ZSGSRD 29160
17-03-18 06:32:59.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:59.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:59.854 -07 000000512 INF: FPGA: Recv ZSGSRD 29154
17-03-18 06:32:59.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:59.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:59.864 -07 000000438 INF: FPGA: Recv ZSGSRD 29158
17-03-18 06:32:59.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:59.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:59.874 -07 000000479 INF: FPGA: Recv ZSGSRD 29159
17-03-18 06:32:59.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:59.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:59.884 -07 000000592 INF: FPGA: Recv ZSGSRD 29156
17-03-18 06:32:59.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:59.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:59.894 -07 000000561 INF: FPGA: Recv ZSGSRD 29156
17-03-18 06:32:59.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:59.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:59.904 -07 000000502 INF: FPGA: Recv ZSGSRD 29157
17-03-18 06:32:59.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:59.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:32:59.914 -07 000000479 INF: FPGA: Recv ZSGSRD 29160
17-03-18 06:32:59.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:59.924 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:32:59.924 -07 000000437 INF: FPGA: Recv ZPIEZORD 24625
17-03-18 06:32:59.934 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:32:59.934 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.254 V. Piezo Error = -9.9 V.
17-03-18 06:32:59.934 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29157 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29157 (-126.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29154 (-126.8 uncal um), Max = 29160 (-126.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:32:59.934 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29157, posNoise = 3, negNoise = 3
17-03-18 06:32:59.934 -07 000000610 INF: Z Motor: After move to -0.127626, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:32:59.934 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:32:59.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:32:59.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:32:59.934 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:32:59.934 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:32:59.934 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:32:59.934 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:32:59.934 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:32:59.944 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:32:59.944 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 06:32:59.944 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:32:59.944 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 7 ms.
17-03-18 06:32:59.944 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:32:59.944 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:32:59.944 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:32:59.944 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:32:59.944 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:32:59.964 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:32:59.964 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 28 ms.
17-03-18 06:32:59.964 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:32:59.964 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 29 ms.
17-03-18 06:32:59.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28057 150\n [Camera]
17-03-18 06:33:00.164 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:33:00.624 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:33:00.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:33:00.634 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:33:00.634 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:33:00.634 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:33:00.634 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:33:00.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:33:00.634 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:33:00.634 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:33:00.634 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:33:00.824 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28057 846
17-03-18 06:33:00.974 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:33:01.014 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:33:01.014 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:33:01.014 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:01.014 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:33:01.014 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:33:01.014 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:33:01.014 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:01.024 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:33:01.024 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:33:01.024 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:33:01.194 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:33:01.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:33:01.194 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:33:01.194 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:33:01.194 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:33:01.194 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:33:01.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:33:01.194 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:33:01.194 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:33:01.194 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:33:01.384 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:33:01.384 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:33:01.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28057 150' command took 2 ms to send, 1406 ms to get response, and 1418 ms overall
17-03-18 06:33:01.384 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:33:01.384 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.127634105428459. ------
17-03-18 06:33:01.394 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:33:01.394 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13408 mm
17-03-18 06:33:01.394 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:33:01.394 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29291, sync = True, waitForSettling = False)
17-03-18 06:33:01.394 -07 000000561 INF: Z Motor: Moving to -0.134086 mm, started at -0.127634 mm, distance = -6.45 um
17-03-18 06:33:01.394 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:33:01.394 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:33:01.394 -07 000000438 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 06:33:01.404 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:33:01.404 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:33:01.404 -07 000000512 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:33:01.414 -07 000000561 INF: FPGA: Xmit ZDACW 29291\n [Z Motor]
17-03-18 06:33:01.414 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:33:01.414 -07 000000438 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:33:01.524 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:33:01.524 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:33:01.534 -07 000000561 INF: FPGA: 'ZDACW 29291' command took 0 ms to send, 0 ms to get response, and 134 ms overall
17-03-18 06:33:01.534 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:33:01.534 -07 000000590 INF: FPGA: Recv ZDACR 29291
17-03-18 06:33:01.534 -07 000000438 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:33:01.534 -07 000000438 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:33:01.544 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:01.544 -07 000000561 INF: Z Motor: MoveAbsStepped took 144 ms (did NOT wait for settling yet))
17-03-18 06:33:01.544 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:33:01.594 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:33:01.594 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:33:01.594 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:01.594 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:33:01.594 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:33:01.594 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:01.594 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:33:01.604 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:33:01.604 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:33:01.604 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:33:01.734 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:33:01.734 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 332 ms overall
17-03-18 06:33:01.874 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:33:01.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:33:01.914 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:33:01.914 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 06:33:01.974 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:33:01.974 -07 000000512 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:33:01.984 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:01.984 -07 000000438 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:33:01.984 -07 000000438 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 06:33:01.984 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.199 mm/sec
17-03-18 06:33:02.024 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.994908,
17-03-18 06:33:02.934 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:33:02.934 -07 000000590 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:33:02.944 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:02.944 -07 000000438 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:33:02.974 -07 000000438 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:33:02.974 -07 000000438 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:33:02.974 -07 000000438 INF: Y Motor: Moved to 73.1748 after 1577 ms (table move)
17-03-18 06:33:02.974 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134086 mm (DAC = 29291)
17-03-18 06:33:02.974 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:02.974 -07 000000592 INF: FPGA: Recv ZSGSRD 30164
17-03-18 06:33:02.984 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:33:02.984 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:02.984 -07 000000437 INF: FPGA: Recv ZSGSRD 30165
17-03-18 06:33:02.994 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:02.994 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:02.994 -07 000000487 INF: FPGA: Recv ZSGSRD 30161
17-03-18 06:33:03.004 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:03.004 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:03.004 -07 000000479 INF: FPGA: Recv ZSGSRD 30158
17-03-18 06:33:03.014 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:03.014 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:03.014 -07 000000487 INF: FPGA: Recv ZSGSRD 30166
17-03-18 06:33:03.024 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:03.024 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:03.024 -07 000000437 INF: FPGA: Recv ZSGSRD 30163
17-03-18 06:33:03.034 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:03.034 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:03.034 -07 000000592 INF: FPGA: Recv ZSGSRD 30166
17-03-18 06:33:03.044 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:03.044 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:03.044 -07 000000479 INF: FPGA: Recv ZSGSRD 30162
17-03-18 06:33:03.054 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:03.054 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:03.054 -07 000000487 INF: FPGA: Recv ZSGSRD 30163
17-03-18 06:33:03.064 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:03.064 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:03.064 -07 000000438 INF: FPGA: Recv ZSGSRD 30165
17-03-18 06:33:03.074 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:03.074 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:33:03.074 -07 000000512 INF: FPGA: Recv ZPIEZORD 25966
17-03-18 06:33:03.084 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:03.084 -07 000000502 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.470 V. Piezo Error = -9.2 V.
17-03-18 06:33:03.084 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30163 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30164 (-133.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30158 (-133.3 uncal um), Max = 30166 (-133.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:33:03.084 -07 000000502 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30163, posNoise = 3, negNoise = 5
17-03-18 06:33:03.084 -07 000000502 INF: Z Motor: After move to -0.134086, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:33:03.084 -07 000000502 INF: Z Motor: Settle wait time = 1581 ms, measure time = 104 ms (allowed 150 ms), total time = 1685 ms
17-03-18 06:33:03.084 -07 000000502 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:33:03.134 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1737 ms
17-03-18 06:33:03.134 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:33:03.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:33:03.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:33:03.134 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:33:03.134 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:33:03.134 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:33:03.134 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:33:03.134 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:33:03.134 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:33:03.134 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:33:03.134 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:33:03.144 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:33:03.144 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:33:03.154 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:33:03.194 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:33:03.494 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:33:03.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:33:03.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:33:03.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:33:03.534 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:33:03.534 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 06:33:03.534 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:33:03.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:33:03.614 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:03.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:33:03.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:33:03.634 -07 000000487 INF: Autofocus start
17-03-18 06:33:03.634 -07 000000487 INF: MeasureProfile start
17-03-18 06:33:03.634 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:33:03.634 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:33:03.644 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:33:03.644 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:33:03.644 -07 000000487 INF: MeasureProfile done
17-03-18 06:33:03.644 -07 000000487 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:33:03.644 -07 000000487 INF: Autofocus finished
17-03-18 06:33:03.844 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:33:03.844 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:33:03.844 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.134096862843071. ----------
17-03-18 06:33:03.854 -07 000000610 INF: Cycle	150	Tile	17	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:33:03.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27815, sync = True, waitForSettling = True)
17-03-18 06:33:03.854 -07 000000610 INF: Z Motor: Moving to -0.127329 mm, started at -0.134097 mm, distance = 6.77 um
17-03-18 06:33:03.854 -07 000000610 INF: FPGA: Xmit ZDACW 27815\n [Z Motor]
17-03-18 06:33:03.854 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:33:03.864 -07 000000610 INF: FPGA: 'ZDACW 27815' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:33:03.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:33:03.864 -07 000000438 INF: FPGA: Recv ZDACR 27815
17-03-18 06:33:03.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:03.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:33:04.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:04.024 -07 000000561 INF: FPGA: Recv ZSGSRD 29114
17-03-18 06:33:04.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:33:04.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:04.034 -07 000000438 INF: FPGA: Recv ZSGSRD 29112
17-03-18 06:33:04.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:04.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:04.044 -07 000000487 INF: FPGA: Recv ZSGSRD 29104
17-03-18 06:33:04.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:04.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:04.054 -07 000000512 INF: FPGA: Recv ZSGSRD 29110
17-03-18 06:33:04.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:04.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:04.064 -07 000000437 INF: FPGA: Recv ZSGSRD 29111
17-03-18 06:33:04.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:33:04.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:04.074 -07 000000487 INF: FPGA: Recv ZSGSRD 29114
17-03-18 06:33:04.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:04.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:04.084 -07 000000561 INF: FPGA: Recv ZSGSRD 29108
17-03-18 06:33:04.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:04.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:04.094 -07 000000561 INF: FPGA: Recv ZSGSRD 29106
17-03-18 06:33:04.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:04.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:04.104 -07 000000437 INF: FPGA: Recv ZSGSRD 29108
17-03-18 06:33:04.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:04.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:04.114 -07 000000438 INF: FPGA: Recv ZSGSRD 29103
17-03-18 06:33:04.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:04.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:33:04.124 -07 000000502 INF: FPGA: Recv ZPIEZORD 24582
17-03-18 06:33:04.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:04.134 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.244 V. Piezo Error = -9.9 V.
17-03-18 06:33:04.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29109 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29109 (-126.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29103 (-126.5 uncal um), Max = 29114 (-126.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:33:04.134 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29109, posNoise = 5, negNoise = 6
17-03-18 06:33:04.134 -07 000000610 INF: Z Motor: After move to -0.127329, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:33:04.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:33:04.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:33:04.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:33:04.134 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:33:04.134 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:33:04.134 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:33:04.134 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:33:04.134 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:33:04.134 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:33:04.134 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:33:04.134 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:33:04.134 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:33:04.134 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:33:04.144 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:33:04.144 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:33:04.144 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:33:04.144 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:33:04.144 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:33:04.144 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:33:04.154 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:33:04.154 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:33:04.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 27991 150\n [Camera]
17-03-18 06:33:04.354 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:33:04.814 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:33:04.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:33:04.814 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:33:04.814 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:33:04.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:33:04.814 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:33:04.824 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:33:04.824 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:33:04.824 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:33:04.824 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:33:05.004 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27991 846
17-03-18 06:33:05.154 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:33:05.194 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 06:33:05.194 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 06:33:05.194 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:05.194 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:33:05.194 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:33:05.194 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:05.204 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:33:05.204 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:33:05.204 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:33:05.204 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:33:05.374 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:33:05.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:33:05.384 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:33:05.384 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:33:05.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:33:05.384 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:33:05.384 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:33:05.384 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 06:33:05.384 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:33:05.384 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:33:05.574 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-18 06:33:05.574 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:33:05.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 27991 150' command took 2 ms to send, 1414 ms to get response, and 1420 ms overall
17-03-18 06:33:05.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:33:05.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.127325743245655. ------
17-03-18 06:33:05.704 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:33:05.704 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13323 mm
17-03-18 06:33:05.704 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:33:05.704 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:33:05.704 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:33:05.704 -07 000000479 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 06:33:05.704 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29104, sync = True, waitForSettling = False)
17-03-18 06:33:05.704 -07 000000502 INF: Z Motor: Moving to -0.133230 mm, started at -0.127326 mm, distance = -5.90 um
17-03-18 06:33:05.714 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:33:05.714 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:33:05.714 -07 000000438 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:33:05.724 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:33:05.724 -07 000000479 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:33:05.724 -07 000000479 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:33:05.724 -07 000000479 INF: Y Motor: Moving 1356 steps-36
17-03-18 06:33:05.724 -07 000000502 INF: FPGA: Xmit ZDACW 29104\n [Z Motor]
17-03-18 06:33:05.724 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:33:05.734 -07 000000502 INF: FPGA: 'ZDACW 29104' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:33:05.734 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:33:05.744 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:33:05.754 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:33:05.754 -07 000000590 INF: FPGA: Recv ZDACR 29104
17-03-18 06:33:05.764 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:33:05.764 -07 000000502 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:33:05.774 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 06:33:05.774 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:33:05.774 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:05.784 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:33:05.784 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:33:05.784 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:05.784 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:33:05.784 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:33:05.784 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:33:05.794 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:33:05.934 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:33:05.934 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:33:06.114 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:33:06.114 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:33:06.164 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:33:06.164 -07 000000512 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:33:06.174 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:06.174 -07 000000479 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:33:06.174 -07 000000479 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:33:06.174 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.848 mm, average velocity = 2.136 mm/sec
17-03-18 06:33:06.874 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:33:06.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:33:07.124 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:33:07.124 -07 000000437 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:33:07.134 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:33:07.134 -07 000000479 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:33:07.154 -07 000000479 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:33:07.154 -07 000000479 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:33:07.154 -07 000000479 INF: Y Motor: Moved to 74.0068 after 1450 ms (table move)
17-03-18 06:33:07.164 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133230 mm (DAC = 29104)
17-03-18 06:33:07.164 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:07.164 -07 000000502 INF: FPGA: Recv ZSGSRD 30038
17-03-18 06:33:07.174 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:07.174 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:07.174 -07 000000590 INF: FPGA: Recv ZSGSRD 30024
17-03-18 06:33:07.184 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:07.184 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:07.184 -07 000000512 INF: FPGA: Recv ZSGSRD 30023
17-03-18 06:33:07.194 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:07.194 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:07.194 -07 000000512 INF: FPGA: Recv ZSGSRD 30032
17-03-18 06:33:07.204 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:07.204 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:07.204 -07 000000590 INF: FPGA: Recv ZSGSRD 30022
17-03-18 06:33:07.214 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:07.214 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:07.214 -07 000000438 INF: FPGA: Recv ZSGSRD 30031
17-03-18 06:33:07.224 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:07.224 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:07.224 -07 000000512 INF: FPGA: Recv ZSGSRD 30023
17-03-18 06:33:07.234 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:07.234 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:07.234 -07 000000561 INF: FPGA: Recv ZSGSRD 30032
17-03-18 06:33:07.244 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:07.244 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:07.244 -07 000000502 INF: FPGA: Recv ZSGSRD 30039
17-03-18 06:33:07.254 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:07.254 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:07.254 -07 000000512 INF: FPGA: Recv ZSGSRD 30026
17-03-18 06:33:07.264 -07 000000487 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:07.264 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:33:07.264 -07 000000437 INF: FPGA: Recv ZPIEZORD 25821
17-03-18 06:33:07.274 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:07.274 -07 000000487 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.2 V.
17-03-18 06:33:07.274 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30029 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30028 (-132.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30022 (-132.4 uncal um), Max = 30039 (-132.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:33:07.274 -07 000000487 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30029, posNoise = 10, negNoise = 7
17-03-18 06:33:07.274 -07 000000487 INF: Z Motor: After move to -0.133230, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:33:07.274 -07 000000487 INF: Z Motor: Settle wait time = 1454 ms, measure time = 109 ms (allowed 150 ms), total time = 1563 ms
17-03-18 06:33:07.274 -07 000000487 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 06:33:07.324 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 06:33:07.324 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:33:07.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:33:07.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:33:07.324 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:33:07.324 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:33:07.324 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:33:07.324 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:33:07.324 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:33:07.324 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:33:07.334 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:33:07.334 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:33:07.334 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 06:33:07.334 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:33:07.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:33:07.384 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:33:07.394 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.99219,
17-03-18 06:33:07.684 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:33:07.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:33:07.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:33:07.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 06:33:07.724 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:33:07.724 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 06:33:07.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:33:07.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:33:07.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:07.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:33:07.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:33:07.824 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:33:07.824 -07 000000479 INF: Autofocus start
17-03-18 06:33:07.824 -07 000000479 INF: MeasureProfile start
17-03-18 06:33:07.824 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:33:07.834 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:33:07.834 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:33:07.834 -07 000000479 INF: MeasureProfile done
17-03-18 06:33:07.834 -07 000000479 INF: X=96  Z correction [um]=0.437849
17-03-18 06:33:07.834 -07 000000479 INF: Autofocus finished
17-03-18 06:33:08.034 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:33:08.034 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:33:08.034 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.133236018416075. ----------
17-03-18 06:33:08.034 -07 000000610 INF: Cycle	150	Tile	18	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:33:08.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27713, sync = True, waitForSettling = True)
17-03-18 06:33:08.044 -07 000000610 INF: Z Motor: Moving to -0.126862 mm, started at -0.133236 mm, distance = 6.37 um
17-03-18 06:33:08.044 -07 000000610 INF: FPGA: Xmit ZDACW 27713\n [Z Motor]
17-03-18 06:33:08.044 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:33:08.054 -07 000000610 INF: FPGA: 'ZDACW 27713' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:33:08.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:33:08.054 -07 000000590 INF: FPGA: Recv ZDACR 27713
17-03-18 06:33:08.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:08.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:33:08.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:08.214 -07 000000502 INF: FPGA: Recv ZSGSRD 29036
17-03-18 06:33:08.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:33:08.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:08.224 -07 000000438 INF: FPGA: Recv ZSGSRD 29040
17-03-18 06:33:08.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:08.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:08.234 -07 000000502 INF: FPGA: Recv ZSGSRD 29038
17-03-18 06:33:08.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:08.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:08.244 -07 000000438 INF: FPGA: Recv ZSGSRD 29035
17-03-18 06:33:08.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:08.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:08.254 -07 000000437 INF: FPGA: Recv ZSGSRD 29039
17-03-18 06:33:08.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:08.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:08.264 -07 000000479 INF: FPGA: Recv ZSGSRD 29038
17-03-18 06:33:08.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:08.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:08.274 -07 000000437 INF: FPGA: Recv ZSGSRD 29036
17-03-18 06:33:08.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:08.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:08.284 -07 000000592 INF: FPGA: Recv ZSGSRD 29035
17-03-18 06:33:08.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:08.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:08.294 -07 000000438 INF: FPGA: Recv ZSGSRD 29039
17-03-18 06:33:08.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:08.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:08.304 -07 000000590 INF: FPGA: Recv ZSGSRD 29033
17-03-18 06:33:08.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:08.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:33:08.314 -07 000000479 INF: FPGA: Recv ZPIEZORD 24505
17-03-18 06:33:08.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:08.324 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.229 V. Piezo Error = -9.9 V.
17-03-18 06:33:08.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29037 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29037 (-126.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29033 (-126.1 uncal um), Max = 29040 (-126.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:33:08.324 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29037, posNoise = 3, negNoise = 4
17-03-18 06:33:08.324 -07 000000610 INF: Z Motor: After move to -0.126862, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:33:08.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:33:08.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:33:08.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:33:08.324 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:33:08.324 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:33:08.324 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:33:08.324 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:33:08.324 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:33:08.324 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:33:08.324 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:33:08.324 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:33:08.324 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:33:08.324 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:33:08.334 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:33:08.334 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:33:08.334 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:33:08.334 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:33:08.344 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:33:08.344 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:33:08.344 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:33:08.344 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:33:08.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 27889 150\n [Camera]
17-03-18 06:33:08.544 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:33:09.004 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:33:09.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:33:09.004 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:33:09.004 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:33:09.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:33:09.004 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:33:09.004 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:33:09.004 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:33:09.014 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:33:09.014 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:33:09.194 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27889 846
17-03-18 06:33:09.344 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:33:09.404 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:33:09.404 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:33:09.404 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:09.404 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:33:09.404 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:33:09.404 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:09.404 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:33:09.404 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:33:09.414 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:33:09.414 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:33:09.564 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:33:09.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:33:09.574 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:33:09.574 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:33:09.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:33:09.574 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:33:09.574 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:33:09.574 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:33:09.574 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:33:09.574 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) start.
17-03-18 06:33:09.754 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:33:09.764 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:33:09.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 27889 150' command took 2 ms to send, 1410 ms to get response, and 1418 ms overall
17-03-18 06:33:09.764 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:33:09.764 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.126863199971448. ------
17-03-18 06:33:09.764 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:33:09.764 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13327 mm
17-03-18 06:33:09.764 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:33:09.764 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:33:09.764 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29113, sync = True, waitForSettling = False)
17-03-18 06:33:09.774 -07 000000561 INF: Z Motor: Moving to -0.133271 mm, started at -0.126863 mm, distance = -6.41 um
17-03-18 06:33:09.774 -07 000000561 INF: FPGA: Xmit ZDACW 29113\n [Z Motor]
17-03-18 06:33:09.774 -07 000000437 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 06:33:09.774 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:33:09.774 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:33:09.774 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:33:09.784 -07 000000561 INF: FPGA: 'ZDACW 29113' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:09.784 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:33:09.784 -07 000000480 INF: FPGA: Recv ZDACR 29113
17-03-18 06:33:09.794 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:33:09.794 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:09.794 -07 000000561 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 06:33:09.794 -07 000000590 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:33:09.804 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:33:09.804 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:33:09.804 -07 000000437 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:33:09.804 -07 000000437 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:33:09.804 -07 000000437 INF: Y Motor: Moving 1352 steps-32
17-03-18 06:33:09.814 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:33:09.974 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2772078296, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:33:09.974 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:33:09.974 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:09.974 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:33:09.974 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:33:09.974 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:09.984 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:33:09.984 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:33:09.984 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:33:09.984 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:33:10.004 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:33:10.004 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 231 ms overall
17-03-18 06:33:10.184 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:33:10.184 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 06:33:10.224 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:33:10.224 -07 000000438 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:33:10.234 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:33:10.234 -07 000000437 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:33:10.234 -07 000000437 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 06:33:10.234 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.846 mm, average velocity = 2.203 mm/sec
17-03-18 06:33:11.184 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:33:11.184 -07 000000479 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:33:11.194 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:33:11.194 -07 000000437 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:33:11.214 -07 000000437 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:33:11.214 -07 000000437 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:33:11.214 -07 000000437 INF: Y Motor: Moved to 74.8306 after 1440 ms (table move)
17-03-18 06:33:11.214 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133271 mm (DAC = 29113)
17-03-18 06:33:11.214 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:11.214 -07 000000480 INF: FPGA: Recv ZSGSRD 30039
17-03-18 06:33:11.224 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:33:11.224 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:11.224 -07 000000424 INF: FPGA: Recv ZSGSRD 30032
17-03-18 06:33:11.234 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:11.234 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:11.234 -07 000000455 INF: FPGA: Recv ZSGSRD 30035
17-03-18 06:33:11.244 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:11.244 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:11.244 -07 000000424 INF: FPGA: Recv ZSGSRD 30038
17-03-18 06:33:11.254 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:11.254 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:11.254 -07 000000438 INF: FPGA: Recv ZSGSRD 30033
17-03-18 06:33:11.264 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:11.264 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:11.264 -07 000000479 INF: FPGA: Recv ZSGSRD 30038
17-03-18 06:33:11.274 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:11.274 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:11.274 -07 000000592 INF: FPGA: Recv ZSGSRD 30034
17-03-18 06:33:11.284 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:11.284 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:11.284 -07 000000424 INF: FPGA: Recv ZSGSRD 30034
17-03-18 06:33:11.294 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:11.294 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:11.294 -07 000000438 INF: FPGA: Recv ZSGSRD 30034
17-03-18 06:33:11.304 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:11.304 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:11.304 -07 000000626 INF: FPGA: Recv ZSGSRD 30033
17-03-18 06:33:11.314 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:11.314 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:33:11.314 -07 000000592 INF: FPGA: Recv ZPIEZORD 25822
17-03-18 06:33:11.324 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:11.324 -07 000000606 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.442 V. Piezo Error = -9.3 V.
17-03-18 06:33:11.324 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30035 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30034 (-132.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30032 (-132.5 uncal um), Max = 30039 (-132.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:33:11.324 -07 000000606 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30035, posNoise = 4, negNoise = 3
17-03-18 06:33:11.324 -07 000000606 INF: Z Motor: After move to -0.133271, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:33:11.324 -07 000000606 INF: Z Motor: Settle wait time = 1443 ms, measure time = 107 ms (allowed 150 ms), total time = 1550 ms
17-03-18 06:33:11.324 -07 000000606 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:33:11.374 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 06:33:11.374 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:33:11.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:33:11.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:33:11.374 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:33:11.374 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:33:11.374 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:33:11.374 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:33:11.374 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:33:11.374 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:33:11.384 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:33:11.384 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:33:11.394 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:33:11.394 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 06:33:11.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:33:11.444 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:33:11.744 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:33:11.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:33:11.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:33:11.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2736656032, 0x0, 559484976) start.
17-03-18 06:33:11.784 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:33:11.784 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 06:33:11.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:33:11.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2736656032, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:33:11.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:11.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:33:11.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:33:11.874 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:33:11.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 149. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:33:11.884 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:33:11.884 -07 000000606 INF: Autofocus start
17-03-18 06:33:11.884 -07 000000606 INF: MeasureProfile start
17-03-18 06:33:11.884 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:33:11.894 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:33:11.894 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:33:11.894 -07 000000606 INF: MeasureProfile done
17-03-18 06:33:11.894 -07 000000606 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:33:11.894 -07 000000606 INF: Autofocus finished
17-03-18 06:33:12.094 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:33:12.094 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:33:12.094 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.133274563688925. ----------
17-03-18 06:33:12.094 -07 000000610 INF: Cycle	150	Tile	19	Exposure Settings		A	461	G	222	T	222	C	461
17-03-18 06:33:12.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27638, sync = True, waitForSettling = True)
17-03-18 06:33:12.104 -07 000000610 INF: Z Motor: Moving to -0.126519 mm, started at -0.133275 mm, distance = 6.76 um
17-03-18 06:33:12.104 -07 000000610 INF: FPGA: Xmit ZDACW 27638\n [Z Motor]
17-03-18 06:33:12.104 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:33:12.114 -07 000000610 INF: FPGA: 'ZDACW 27638' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:33:12.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:33:12.114 -07 000000487 INF: FPGA: Recv ZDACR 27638
17-03-18 06:33:12.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:12.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:33:12.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:12.274 -07 000000606 INF: FPGA: Recv ZSGSRD 28981
17-03-18 06:33:12.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:12.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:12.284 -07 000000606 INF: FPGA: Recv ZSGSRD 28988
17-03-18 06:33:12.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:12.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:12.294 -07 000000479 INF: FPGA: Recv ZSGSRD 28979
17-03-18 06:33:12.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:12.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:12.304 -07 000000479 INF: FPGA: Recv ZSGSRD 28987
17-03-18 06:33:12.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:12.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:12.314 -07 000000479 INF: FPGA: Recv ZSGSRD 28991
17-03-18 06:33:12.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:33:12.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:12.324 -07 000000606 INF: FPGA: Recv ZSGSRD 28994
17-03-18 06:33:12.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:12.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:12.334 -07 000000606 INF: FPGA: Recv ZSGSRD 28978
17-03-18 06:33:12.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:12.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:12.344 -07 000000626 INF: FPGA: Recv ZSGSRD 28983
17-03-18 06:33:12.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:12.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:12.354 -07 000000626 INF: FPGA: Recv ZSGSRD 28989
17-03-18 06:33:12.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:12.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:33:12.364 -07 000000512 INF: FPGA: Recv ZSGSRD 28984
17-03-18 06:33:12.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:12.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:33:12.374 -07 000000512 INF: FPGA: Recv ZPIEZORD 24440
17-03-18 06:33:12.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:12.384 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.217 V. Piezo Error = -10.0 V.
17-03-18 06:33:12.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28985 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28986 (-125.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 28978 (-125.7 uncal um), Max = 28994 (-125.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:33:12.384 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28985, posNoise = 9, negNoise = 7
17-03-18 06:33:12.384 -07 000000610 INF: Z Motor: After move to -0.126519, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:33:12.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:33:12.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:33:12.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:33:12.384 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:33:12.384 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:33:12.384 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:33:12.384 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:33:12.384 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:33:12.384 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:33:12.384 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:33:12.384 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:33:12.384 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:33:12.384 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:33:12.394 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:33:12.394 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:33:12.394 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:33:12.394 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:33:12.404 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:33:12.404 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:33:12.404 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:33:12.404 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:33:12.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 27814 150\n [Camera]
17-03-18 06:33:12.604 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:33:12.764 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.979922,
17-03-18 06:33:13.064 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-18 06:33:13.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-18 06:33:13.064 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:33:13.064 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:33:13.064 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:33:13.064 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-18 06:33:13.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-18 06:33:13.064 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:33:13.064 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:33:13.064 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:33:13.264 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27814 846
17-03-18 06:33:13.404 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-18 06:33:13.444 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:33:13.444 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:33:13.444 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:13.444 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:33:13.444 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:33:13.444 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:13.444 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:33:13.444 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:33:13.444 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:33:13.454 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:33:13.624 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-18 06:33:13.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-18 06:33:13.634 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:33:13.634 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:33:13.634 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:33:13.634 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-18 06:33:13.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-18 06:33:13.634 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:33:13.634 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:33:13.634 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:33:13.824 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-18 06:33:13.824 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:33:13.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 27814 150' command took 2 ms to send, 1411 ms to get response, and 1418 ms overall
17-03-18 06:33:14.034 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:33:14.034 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:33:14.034 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:14.034 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:33:14.034 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:33:14.034 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:33:14.034 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:33:14.044 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:33:14.044 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:33:14.044 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:33:14.044 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:33:14.084 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 06:33:14.084 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:33:14.124 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:33:14.254 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-18 06:33:14.254 -07 000000610 INF: Imaging Cycle 150: ScanTilesCommand Cycle 150 time end. Duration was 165655 ms.
17-03-18 06:33:14.254 -07 000000610 INF: =================== Cycle #150 ===================
17-03-18 06:33:14.254 -07 000000610 INF: ===================  ===================
17-03-18 06:33:14.254 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:33:14.254 -07 000000561 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 06:33:14.264 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:33:14.264 -07 000000480 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 06:33:14.264 -07 000000480 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 150, FrontChillerTemperature: 3.979922, FrontChillerHeatSinkTemperature: 0.521162, AmbientTemperature: 18.7044, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.45504, GreenLEDSensorTemperature: 27.42813, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 06:33:14.384 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.