17-03-18 06:33:14.434 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:33:14.434 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 06:33:14.434 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8306 mm, delta = 0.5500 mm
17-03-18 06:33:14.434 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:33:14.444 -07 000000561 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:33:14.444 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:33:14.444 -07 000000610 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:33:14.444 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 06:33:14.444 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 06:33:14.444 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 06:33:14.564 -07 000000592 INF: FPGA: Recv YMVTO 154378 875
17-03-18 06:33:14.564 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 111 ms to get response, and 116 ms overall
17-03-18 06:33:14.564 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 06:33:14.564 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 879 steps, but required 875 steps (0.547 mm). Slippage = -0.003 mm (0.00%).
17-03-18 06:33:14.564 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.550 mm, average velocity = 4.741 mm/sec
17-03-18 06:33:16.874 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:33:16.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1975, R2=2054, Total=4029. Warn if over 250 bubbles per interval.
17-03-18 06:33:17.564 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:33:17.564 -07 000000591 INF: FPGA: Recv YRDPOS 154381
17-03-18 06:33:17.574 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:33:17.574 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:33:17.594 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:33:17.594 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 3 counts (0.001 mm)
17-03-18 06:33:17.594 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3159 ms
17-03-18 06:33:17.604 -07 000000610 INF: =================== Cycle #151, Flow Cell Temp 60° ===================
17-03-18 06:33:17.604 -07 000000610 INF: =================== Cycle #151, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 06:33:17.604 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 06:33:17.604 -07 000000590 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:33:17.614 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:33:17.614 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:33:17.614 -07 000000438 INF: FPGA: Recv TEC2EN 
17-03-18 06:33:17.624 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:17.624 -07 000000610 INF: =================== Cycle #151, Flow Cell Temp 60° ===================
17-03-18 06:33:17.624 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:33:17.624 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:33:17.624 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:33:17.654 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:33:17.654 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 06:33:17.654 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:33:17.954 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:33:17.974 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:33:17.974 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:33:18.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:33:18.044 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:33:18.044 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:33:18.134 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.969015,
17-03-18 06:33:18.144 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:33:18.144 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:33:18.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:18.174 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:33:18.174 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:33:18.174 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:33:18.304 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:33:18.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:21.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:21.504 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:21.874 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 5
17-03-18 06:33:21.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=5, R2=5, Total=10. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1980, R2=2059, Total=4039. Warn if over 250 bubbles per interval.
17-03-18 06:33:21.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:21.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:22.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:22.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:22.404 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:33:22.404 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:33:22.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:22.564 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:33:22.564 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:33:22.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:22.724 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:33:22.724 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:33:22.724 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:33:22.854 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:33:22.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:23.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:23.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:23.344 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:33:23.344 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:33:23.504 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.978563,
17-03-18 06:33:24.564 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:33:24.564 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 06:33:24.564 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:33:24.584 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:33:24.584 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 06:33:24.584 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 06:33:24.714 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:33:24.734 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 06:33:24.734 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 06:33:24.784 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:33:24.804 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:33:24.804 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:33:24.904 -07 000000610 INF: =================== Cycle #151, Pumping Reagent CMS (4) ===================
17-03-18 06:33:24.904 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:33:24.904 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:24.934 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:33:24.934 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:33:24.934 -07 000000610 INF: =================== Cycle #151, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 06:33:25.064 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:33:25.104 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:26.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:26.574 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:26.874 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 06:33:26.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1981, R2=2060, Total=4041. Warn if over 250 bubbles per interval.
17-03-18 06:33:26.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:27.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:27.024 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:33:27.024 -07 000000610 INF: =================== Cycle #151, Pumping Reagent CMS (4) ===================
17-03-18 06:33:27.154 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:27.184 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:33:27.184 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:33:27.314 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:27.344 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:33:27.344 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:33:27.344 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:33:27.474 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:33:27.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:27.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:27.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:27.964 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:33:27.964 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:33:28.874 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.008536,
17-03-18 06:33:29.184 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:33:29.184 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:33:29.184 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:33:29.204 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:33:29.204 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 06:33:29.204 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 06:33:29.354 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:33:29.374 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 06:33:29.374 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 06:33:29.424 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:33:29.444 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:33:29.444 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:33:29.544 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:33:29.544 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:33:29.544 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:29.574 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:33:29.574 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:33:29.574 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:33:29.704 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:33:29.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:30.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:30.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:30.644 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:33:30.644 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:33:30.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:30.804 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:33:30.804 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:33:30.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:30.964 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:33:30.964 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:33:30.964 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:33:31.094 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:33:31.124 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:31.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:31.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:31.584 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:33:31.584 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:33:31.584 -07 000000479 INF: WaitCommand(10000) start
17-03-18 06:33:31.584 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:33:31.584 -07 000000590 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:33:31.874 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 06:33:31.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1982, R2=2061, Total=4043. Warn if over 250 bubbles per interval.
17-03-18 06:33:32.804 -07 000000590 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:33:32.804 -07 000000590 INF: LanePump: Xmit /1?\r
17-03-18 06:33:32.834 -07 000000590 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:33:32.834 -07 000000590 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:33:32.964 -07 000000590 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:33:33.004 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:34.244 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.027603,
17-03-18 06:33:34.534 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:34.564 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:34.984 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:35.014 -07 000000590 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:35.014 -07 000000590 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-18 06:33:35.014 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:33:35.014 -07 000000590 INF: ===================  ===================
17-03-18 06:33:36.874 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:33:36.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1982, R2=2061, Total=4043. Warn if over 250 bubbles per interval.
17-03-18 06:33:39.614 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.031682,
17-03-18 06:33:41.594 -07 000000479 INF: WaitCommand(10000) end
17-03-18 06:33:41.594 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:33:41.594 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 06:33:41.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:41.624 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:33:41.624 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:33:41.624 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:33:41.754 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 06:33:41.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:41.874 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:33:41.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1982, R2=2061, Total=4043. Warn if over 250 bubbles per interval.
17-03-18 06:33:44.984 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.996267,
17-03-18 06:33:46.874 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 06:33:46.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:33:47.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:47.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:48.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:48.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:48.824 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:48.854 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:49.274 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:49.304 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:49.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:49.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:49.754 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 06:33:49.754 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:33:49.884 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:49.914 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:33:49.914 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:33:50.044 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:50.074 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:33:50.074 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:33:50.074 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:33:50.204 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:33:50.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:50.354 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.994908,
17-03-18 06:33:50.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:50.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:50.694 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:33:50.694 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:33:51.874 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:33:51.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:33:51.914 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 06:33:51.914 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 06:33:51.914 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:33:51.934 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:33:51.934 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 06:33:51.934 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 06:33:52.144 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:33:52.164 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 06:33:52.164 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 06:33:52.214 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:33:52.234 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:33:52.234 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:33:52.334 -07 000000610 INF: =================== Cycle #151, Pumping Reagent IMT (1) ===================
17-03-18 06:33:52.334 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:33:52.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:52.374 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:33:52.374 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:33:52.374 -07 000000610 INF: =================== Cycle #151, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 06:33:52.504 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:33:52.544 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:53.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:54.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:54.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:54.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:54.464 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:33:54.464 -07 000000610 INF: =================== Cycle #151, Pumping Reagent IMT (1) ===================
17-03-18 06:33:54.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:54.624 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:33:54.624 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:33:54.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:54.784 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:33:54.784 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:33:54.784 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:33:54.914 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:33:54.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:55.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:55.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:55.404 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:33:55.404 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:33:55.724 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.99219,
17-03-18 06:33:56.624 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 06:33:56.624 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:33:56.624 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:33:56.644 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:33:56.644 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 06:33:56.644 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:33:56.874 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:33:56.874 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:33:56.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:33:56.894 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 06:33:56.894 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 06:33:56.944 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:33:56.964 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:33:56.964 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:33:57.064 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:33:57.064 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:33:57.064 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:57.094 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:33:57.094 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:33:57.094 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:33:57.224 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:33:57.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:33:58.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:58.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:58.164 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:33:58.164 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:33:58.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:58.324 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:33:58.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:33:58.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:33:58.484 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:33:58.484 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:33:58.484 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:33:58.614 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:33:58.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:59.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:33:59.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:33:59.104 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:33:59.104 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:33:59.104 -07 000000610 INF: =================== Cycle #151, Flow Cell Temp 65° ===================
17-03-18 06:33:59.104 -07 000000610 INF: =================== Cycle #151, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 06:33:59.104 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 06:33:59.104 -07 000000455 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:33:59.114 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:33:59.114 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:33:59.114 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-18 06:33:59.124 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:33:59.124 -07 000000610 INF: =================== Cycle #151, Flow Cell Temp 65° ===================
17-03-18 06:33:59.124 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:33:59.124 -07 000000610 INF: WaitCommand(30000) start
17-03-18 06:34:01.094 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.007176,
17-03-18 06:34:01.874 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:34:01.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:34:06.474 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.964938,
17-03-18 06:34:06.874 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:34:06.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:34:11.844 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.96762,
17-03-18 06:34:11.874 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:34:11.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:34:16.874 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:34:16.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:34:17.204 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.978563,
17-03-18 06:34:21.874 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:34:21.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:34:22.574 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.986717,
17-03-18 06:34:26.874 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:34:26.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:34:27.944 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.007176,
17-03-18 06:34:29.134 -07 000000610 INF: WaitCommand(30000) end
17-03-18 06:34:29.134 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:34:29.134 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 06:34:29.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:34:29.264 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:34:29.264 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:34:29.264 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:34:29.394 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 06:34:29.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:34:29.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:34:30.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:34:30.004 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 06:34:30.004 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:34:30.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:34:30.164 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:34:30.164 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:34:30.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:34:30.324 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:34:30.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:34:30.324 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:34:30.454 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:34:30.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:34:30.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:34:30.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:34:30.944 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:34:30.944 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:34:30.944 -07 000000569 INF: WaitCommand(30000) start
17-03-18 06:34:30.944 -07 000000591 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:34:30.944 -07 000000591 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:34:31.874 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:34:31.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:34:32.164 -07 000000591 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:34:32.164 -07 000000591 INF: LanePump: Xmit /1?\r
17-03-18 06:34:32.194 -07 000000591 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:34:32.194 -07 000000591 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:34:32.324 -07 000000591 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:34:32.364 -07 000000591 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:34:33.314 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.031682,
17-03-18 06:34:34.704 -07 000000591 INF: LanePump: Xmit /1Q\r
17-03-18 06:34:34.734 -07 000000591 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:34:35.154 -07 000000591 INF: LanePump: Xmit /1Q\r
17-03-18 06:34:35.184 -07 000000591 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:34:35.184 -07 000000591 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 06:34:35.184 -07 000000591 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:34:35.184 -07 000000591 INF: ===================  ===================
17-03-18 06:34:36.874 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:34:36.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:34:38.684 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.011254,
17-03-18 06:34:41.874 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:34:41.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:34:44.054 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.988112,
17-03-18 06:34:46.874 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:34:46.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:34:49.424 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.993549,
17-03-18 06:34:51.874 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:34:51.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:34:54.794 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.997626,
17-03-18 06:34:56.874 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:34:56.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:35:00.164 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.012614,
17-03-18 06:35:00.954 -07 000000569 INF: WaitCommand(30000) end
17-03-18 06:35:00.954 -07 000000610 INF: =================== Cycle #151, Flow Cell Temp 22° ===================
17-03-18 06:35:00.954 -07 000000610 INF: =================== Cycle #151, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 06:35:00.954 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 06:35:00.964 -07 000000591 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:35:00.964 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 4 ms to get response, and 7 ms overall
17-03-18 06:35:00.964 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:35:00.964 -07 000000437 INF: FPGA: Recv TEC2EN 
17-03-18 06:35:00.974 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:35:00.974 -07 000000610 INF: =================== Cycle #151, Flow Cell Temp 22° ===================
17-03-18 06:35:00.974 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:35:00.974 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:35:00.974 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:35:00.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:35:01.004 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:35:01.004 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:35:01.004 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:35:01.134 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:35:01.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:35:01.874 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:35:01.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:35:04.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:35:04.334 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:35:04.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:35:04.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:35:05.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:35:05.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:35:05.234 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:35:05.234 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:35:05.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:35:05.394 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:35:05.394 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:35:05.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:35:05.534 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.016692,
17-03-18 06:35:05.554 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:35:05.554 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:35:05.554 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:35:05.684 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:35:05.714 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:35:06.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:35:06.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:35:06.174 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:35:06.174 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:35:06.874 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:35:06.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:35:07.394 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:35:07.394 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 06:35:07.394 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:35:07.414 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:35:07.414 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 06:35:07.414 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 06:35:07.564 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:35:07.584 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:35:07.584 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:35:07.634 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:35:07.654 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:35:07.654 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:35:07.754 -07 000000610 INF: =================== Cycle #151, Pumping Reagent USM (2) ===================
17-03-18 06:35:07.754 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:35:07.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:35:07.784 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:35:07.784 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:35:07.784 -07 000000610 INF: =================== Cycle #151, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 06:35:07.914 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:35:07.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:35:09.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:35:09.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:35:09.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:35:09.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:35:09.874 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:35:09.874 -07 000000610 INF: =================== Cycle #151, Pumping Reagent USM (2) ===================
17-03-18 06:35:10.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:35:10.034 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:35:10.034 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:35:10.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:35:10.194 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:35:10.194 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:35:10.194 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:35:10.324 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:35:10.354 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:35:10.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:35:10.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:35:10.814 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:35:10.814 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:35:10.904 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.004458,
17-03-18 06:35:11.874 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:35:11.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:35:12.034 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:35:12.034 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:35:12.034 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:35:12.054 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:35:12.054 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 06:35:12.054 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:35:12.204 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:35:12.224 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:35:12.224 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:35:12.274 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:35:12.294 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:35:12.294 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:35:12.394 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:35:12.394 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:35:12.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:35:12.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:35:12.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:35:12.424 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:35:12.554 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:35:12.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:35:13.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:35:13.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:35:13.494 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:35:13.494 -07 000000610 INF: =================== Cycle #151, Pumping Reagent PR2 (3) ===================
17-03-18 06:35:13.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:35:13.654 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:35:13.654 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:35:13.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:35:13.814 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:35:13.814 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:35:13.814 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:35:13.944 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:35:13.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:35:14.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:35:14.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:35:14.434 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:35:14.434 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:35:14.434 -07 000000455 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:35:14.434 -07 000000438 INF: WaitCommand(10000) start
17-03-18 06:35:14.434 -07 000000455 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:35:15.654 -07 000000455 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:35:15.654 -07 000000455 INF: LanePump: Xmit /1?\r
17-03-18 06:35:15.684 -07 000000455 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:35:15.684 -07 000000455 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:35:15.814 -07 000000455 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:35:15.854 -07 000000455 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:35:16.274 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.990831,
17-03-18 06:35:16.874 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:35:16.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:35:17.384 -07 000000455 INF: LanePump: Xmit /1Q\r
17-03-18 06:35:17.414 -07 000000455 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:35:17.834 -07 000000455 INF: LanePump: Xmit /1Q\r
17-03-18 06:35:17.864 -07 000000455 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:35:17.864 -07 000000455 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:35:17.864 -07 000000455 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:35:17.864 -07 000000455 INF: ===================  ===================
17-03-18 06:35:21.654 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.004458,
17-03-18 06:35:21.874 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:35:21.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:35:24.444 -07 000000438 INF: WaitCommand(10000) end
17-03-18 06:35:24.444 -07 000000610 INF: =================== Cycle #151, Imaging ===================
17-03-18 06:35:24.444 -07 000000610 INF: Imaging Cycle 151: ScanTilesCommand Cycle 151 time start.
17-03-18 06:35:24.444 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 06:35:24.444 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:35:24.474 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:35:24.474 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 06:35:24.474 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 06:35:24.774 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:35:24.794 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:35:24.794 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:35:24.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:35:24.864 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:35:24.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:24.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:24.864 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 06:35:24.864 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:24.864 -07 000000501 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 06:35:24.864 -07 000000438 INF: FPGA: Recv EXLED1ON 
17-03-18 06:35:24.874 -07 000000501 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:35:24.874 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 06:35:24.874 -07 000000561 INF: FPGA: Recv EXLED1ADCR 23040
17-03-18 06:35:24.884 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:24.884 -07 000000501 INF: RedLED: Using Red data: Photodiode ADC 23040 --> 7.4 mW (old method), or 204.3 mW (new method). Difference = 196.9 mW
17-03-18 06:35:24.884 -07 000000501 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 06:35:24.884 -07 000000606 INF: FPGA: Recv EXLED1OFF 
17-03-18 06:35:24.894 -07 000000501 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:24.894 -07 000000501 INF: RedLED: LED was on for 19 ms
17-03-18 06:35:24.894 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 06:35:24.894 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 06:35:24.894 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:24.894 -07 000000501 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 06:35:24.894 -07 000000606 INF: FPGA: Recv EXLED2ON 
17-03-18 06:35:24.904 -07 000000501 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:35:24.904 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:35:24.904 -07 000000438 INF: FPGA: Recv EXLED1ADCR 2097
17-03-18 06:35:24.914 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:24.914 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 2097 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.3 mW
17-03-18 06:35:24.914 -07 000000501 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 06:35:24.914 -07 000000437 INF: FPGA: Recv EXLED2OFF 
17-03-18 06:35:24.924 -07 000000501 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:24.924 -07 000000501 INF: GreenLED: LED was on for 20 ms
17-03-18 06:35:24.924 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 06:35:24.924 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:35:24.924 -07 000000591 INF: FPGA: Recv EMCUR 
17-03-18 06:35:24.934 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:35:24.934 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 06:35:25.434 -07 000000608 INF: FPGA: Recv EMOUT
17-03-18 06:35:25.434 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:35:25.434 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 06:35:25.434 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 06:35:25.444 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:35:25.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:35:25.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.126529140940076. ------
17-03-18 06:35:25.444 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:25.444 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17840 mm
17-03-18 06:35:25.444 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:35:25.444 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:35:25.444 -07 000000455 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-18 06:35:25.444 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38971, sync = True, waitForSettling = False)
17-03-18 06:35:25.444 -07 000000569 INF: Z Motor: Moving to -0.178398 mm, started at -0.126529 mm, distance = -51.87 um
17-03-18 06:35:25.444 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:25.454 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:35:25.454 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:25.454 -07 000000590 INF: FPGA: Recv YRDPOS 154381
17-03-18 06:35:25.464 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:35:25.464 -07 000000455 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:25.464 -07 000000455 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 06:35:25.464 -07 000000455 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:35:25.464 -07 000000569 INF: FPGA: Xmit ZDACW 38971\n [Z Motor]
17-03-18 06:35:25.464 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:35:25.474 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:35:25.474 -07 000000569 INF: FPGA: 'ZDACW 38971' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:35:25.484 -07 000000455 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:35:25.494 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:25.494 -07 000000606 INF: FPGA: Recv ZDACR 38971
17-03-18 06:35:25.504 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:35:25.504 -07 000000569 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 06:35:25.674 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:35:25.674 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 228 ms overall
17-03-18 06:35:26.874 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:35:26.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:35:27.014 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.0344,
17-03-18 06:35:27.164 -07 000000606 INF: FPGA: Recv YMVTO 122701 24779
17-03-18 06:35:27.164 -07 000000455 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-18 06:35:27.164 -07 000000455 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:35:27.164 -07 000000455 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24779 steps (15.487 mm). Slippage = 0.018 mm (0.00%).
17-03-18 06:35:27.164 -07 000000455 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.469 mm, average velocity = 9.067 mm/sec
17-03-18 06:35:30.014 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:30.014 -07 000000626 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:35:30.024 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:30.024 -07 000000455 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:30.054 -07 000000455 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:35:30.054 -07 000000455 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 06:35:30.054 -07 000000455 INF: Y Motor: Moved to 59.9097 after 4606 ms
17-03-18 06:35:30.054 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178398 mm (DAC = 38971)
17-03-18 06:35:30.054 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:30.064 -07 000000569 INF: FPGA: Recv ZSGSRD 37058
17-03-18 06:35:30.064 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:35:30.064 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:30.064 -07 000000626 INF: FPGA: Recv ZSGSRD 37059
17-03-18 06:35:30.074 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:35:30.074 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:30.074 -07 000000626 INF: FPGA: Recv ZSGSRD 37060
17-03-18 06:35:30.084 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:30.084 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:30.084 -07 000000626 INF: FPGA: Recv ZSGSRD 37060
17-03-18 06:35:30.094 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:30.094 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:30.094 -07 000000626 INF: FPGA: Recv ZSGSRD 37060
17-03-18 06:35:30.104 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:30.104 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:30.104 -07 000000501 INF: FPGA: Recv ZSGSRD 37068
17-03-18 06:35:30.114 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:30.114 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:30.114 -07 000000455 INF: FPGA: Recv ZSGSRD 37060
17-03-18 06:35:30.124 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:30.124 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:30.124 -07 000000590 INF: FPGA: Recv ZSGSRD 37057
17-03-18 06:35:30.134 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:30.134 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:30.134 -07 000000590 INF: FPGA: Recv ZSGSRD 37060
17-03-18 06:35:30.144 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:30.144 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:30.144 -07 000000590 INF: FPGA: Recv ZSGSRD 37058
17-03-18 06:35:30.154 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:30.154 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:30.154 -07 000000590 INF: FPGA: Recv ZPIEZORD 33284
17-03-18 06:35:30.164 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:30.164 -07 000000438 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -8.4 V.
17-03-18 06:35:30.164 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37060 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37060 (-177.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37057 (-177.5 uncal um), Max = 37068 (-177.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:35:30.164 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37060, posNoise = 8, negNoise = 3
17-03-18 06:35:30.164 -07 000000438 INF: Z Motor: After move to -0.178398, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:30.164 -07 000000438 INF: Z Motor: Settle wait time = 4610 ms, measure time = 102 ms (allowed 150 ms), total time = 4712 ms
17-03-18 06:35:30.164 -07 000000438 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:35:30.214 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-18 06:35:30.214 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:35:30.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:30.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:30.214 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:30.214 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:30.214 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:35:30.214 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:30.214 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:35:30.214 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:35:30.244 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-18 06:35:30.244 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:35:30.244 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:35:30.244 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:35:30.264 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:35:30.264 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-18 06:35:30.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:35:30.304 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:35:30.604 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:35:30.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:35:30.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:35:30.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 593477872, 0x0, 559484976) start.
17-03-18 06:35:30.644 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:35:30.644 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 06:35:30.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:35:30.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 593477872, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 06:35:30.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:30.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:35:30.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:35:30.844 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:30.844 -07 000000590 INF: Image SNR check: start
17-03-18 06:35:30.844 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:30.854 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:35:30.854 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:35:30.854 -07 000000590 INF: Image SNR check: pass  [peak (Max-Min)=116.38]
17-03-18 06:35:30.854 -07 000000590 INF: Autofocus start
17-03-18 06:35:30.854 -07 000000590 INF: MeasureProfile start
17-03-18 06:35:30.864 -07 000000590 INF: MeasureProfile done
17-03-18 06:35:30.864 -07 000000590 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:35:30.864 -07 000000590 INF: Autofocus finished
17-03-18 06:35:31.054 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:35:31.054 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 06:35:31.054 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178404653984796. ----------
17-03-18 06:35:31.054 -07 000000610 INF: Cycle	151	Tile	1	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:35:31.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37486, sync = True, waitForSettling = True)
17-03-18 06:35:31.064 -07 000000610 INF: Z Motor: Moving to -0.171600 mm, started at -0.178405 mm, distance = 6.80 um
17-03-18 06:35:31.064 -07 000000610 INF: FPGA: Xmit ZDACW 37486\n [Z Motor]
17-03-18 06:35:31.064 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:35:31.074 -07 000000610 INF: FPGA: 'ZDACW 37486' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:35:31.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:31.074 -07 000000461 INF: FPGA: Recv ZDACR 37486
17-03-18 06:35:31.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:31.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:35:31.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:31.234 -07 000000461 INF: FPGA: Recv ZSGSRD 35999
17-03-18 06:35:31.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:31.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:31.244 -07 000000437 INF: FPGA: Recv ZSGSRD 36006
17-03-18 06:35:31.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:31.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:31.254 -07 000000608 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:35:31.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:31.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:31.264 -07 000000608 INF: FPGA: Recv ZSGSRD 36006
17-03-18 06:35:31.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:31.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:31.274 -07 000000608 INF: FPGA: Recv ZSGSRD 35998
17-03-18 06:35:31.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:31.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:31.284 -07 000000608 INF: FPGA: Recv ZSGSRD 36001
17-03-18 06:35:31.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:31.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:31.294 -07 000000608 INF: FPGA: Recv ZSGSRD 36003
17-03-18 06:35:31.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:31.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:31.304 -07 000000501 INF: FPGA: Recv ZSGSRD 36003
17-03-18 06:35:31.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:31.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:31.314 -07 000000501 INF: FPGA: Recv ZSGSRD 36009
17-03-18 06:35:31.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:31.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:31.324 -07 000000501 INF: FPGA: Recv ZSGSRD 36004
17-03-18 06:35:31.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:31.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:31.334 -07 000000606 INF: FPGA: Recv ZPIEZORD 31834
17-03-18 06:35:31.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:31.344 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -9.2 V.
17-03-18 06:35:31.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36003 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36003 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35998 (-170.7 uncal um), Max = 36009 (-170.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:35:31.344 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36003, posNoise = 6, negNoise = 5
17-03-18 06:35:31.344 -07 000000610 INF: Z Motor: After move to -0.171600, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:31.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:35:31.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:31.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:31.344 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:31.344 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:31.344 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:35:31.344 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:31.344 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:35:31.344 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:35:31.344 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:35:31.344 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:35:31.344 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:35:31.344 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:35:31.354 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:35:31.354 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:35:31.364 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:35:31.364 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:35:31.374 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 06:35:31.374 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:35:31.374 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:35:31.374 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:35:31.384 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:35:31.384 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-18 06:35:31.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37663 150\n [Camera]
17-03-18 06:35:31.584 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:35:31.874 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:35:31.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:35:32.054 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:35:32.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:35:32.054 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:32.054 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:35:32.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:35:32.054 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:32.064 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:32.064 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:35:32.064 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:32.064 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 06:35:32.244 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37663 848
17-03-18 06:35:32.384 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.03576,
17-03-18 06:35:32.394 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:35:32.454 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:35:32.454 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:35:32.454 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:32.454 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:35:32.454 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:35:32.454 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:32.454 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:32.454 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:35:32.464 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:32.464 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:35:32.614 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:35:32.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:35:32.614 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:32.624 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:35:32.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:35:32.624 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:32.744 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:32.744 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 06:35:32.754 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:32.754 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:35:32.804 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:35:32.814 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:35:32.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37663 150' command took 4 ms to send, 1410 ms to get response, and 1422 ms overall
17-03-18 06:35:32.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:35:32.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171614261750955. ------
17-03-18 06:35:32.814 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:32.814 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17781 mm
17-03-18 06:35:32.814 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:35:32.814 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:35:32.814 -07 000000606 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 06:35:32.824 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:32.824 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:35:32.824 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:32.824 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38843, sync = True, waitForSettling = False)
17-03-18 06:35:32.824 -07 000000608 INF: Z Motor: Moving to -0.177812 mm, started at -0.171614 mm, distance = -6.20 um
17-03-18 06:35:32.824 -07 000000438 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:35:32.834 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:32.834 -07 000000606 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:32.834 -07 000000606 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:35:32.834 -07 000000606 INF: Y Motor: Moving 1333 steps0
17-03-18 06:35:32.834 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:35:32.844 -07 000000608 INF: FPGA: Xmit ZDACW 38843\n [Z Motor]
17-03-18 06:35:32.844 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:35:32.854 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:35:32.854 -07 000000608 INF: FPGA: 'ZDACW 38843' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:35:32.864 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:32.864 -07 000000590 INF: FPGA: Recv ZDACR 38843
17-03-18 06:35:32.874 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:35:32.874 -07 000000608 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 06:35:33.034 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:35:33.034 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 214 ms overall
17-03-18 06:35:33.144 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:35:33.144 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:35:33.144 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:33.144 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:35:33.144 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:35:33.144 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:33.144 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:35:33.144 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-18 06:35:33.154 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:33.154 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 535 ms.
17-03-18 06:35:33.224 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-18 06:35:33.224 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:35:33.274 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:33.274 -07 000000591 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:35:33.284 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:33.284 -07 000000606 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:33.284 -07 000000606 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:35:33.284 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.098 mm/sec
17-03-18 06:35:34.234 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:34.234 -07 000000626 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:35:34.244 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:34.244 -07 000000606 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:34.274 -07 000000606 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:35:34.274 -07 000000606 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:35:34.274 -07 000000606 INF: Y Motor: Moved to 60.7319 after 1455 ms (table move)
17-03-18 06:35:34.274 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177812 mm (DAC = 38843)
17-03-18 06:35:34.274 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:34.284 -07 000000437 INF: FPGA: Recv ZSGSRD 36973
17-03-18 06:35:34.284 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:35:34.284 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:34.284 -07 000000606 INF: FPGA: Recv ZSGSRD 36974
17-03-18 06:35:34.294 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:35:34.294 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:34.294 -07 000000606 INF: FPGA: Recv ZSGSRD 36958
17-03-18 06:35:34.304 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:34.304 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:34.304 -07 000000606 INF: FPGA: Recv ZSGSRD 36972
17-03-18 06:35:34.314 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:34.314 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:34.324 -07 000000437 INF: FPGA: Recv ZSGSRD 36971
17-03-18 06:35:34.334 -07 000000561 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:35:34.334 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:34.334 -07 000000437 INF: FPGA: Recv ZSGSRD 36973
17-03-18 06:35:34.344 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:34.344 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:34.344 -07 000000606 INF: FPGA: Recv ZSGSRD 36971
17-03-18 06:35:34.354 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:34.354 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:34.354 -07 000000437 INF: FPGA: Recv ZSGSRD 36972
17-03-18 06:35:34.364 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:34.364 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:34.364 -07 000000437 INF: FPGA: Recv ZSGSRD 36970
17-03-18 06:35:34.374 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:34.374 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:34.374 -07 000000438 INF: FPGA: Recv ZSGSRD 36967
17-03-18 06:35:34.384 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:34.384 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:34.384 -07 000000590 INF: FPGA: Recv ZPIEZORD 33125
17-03-18 06:35:34.394 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:34.394 -07 000000561 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.5 V.
17-03-18 06:35:34.394 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36970 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36972 (-176.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36958 (-176.9 uncal um), Max = 36974 (-177.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 06:35:34.394 -07 000000561 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36970, posNoise = 4, negNoise = 12
17-03-18 06:35:34.394 -07 000000561 INF: Z Motor: After move to -0.177812, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:34.394 -07 000000561 INF: Z Motor: Settle wait time = 1457 ms, measure time = 113 ms (allowed 150 ms), total time = 1570 ms
17-03-18 06:35:34.394 -07 000000561 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-18 06:35:34.434 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 06:35:34.434 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:35:34.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:34.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:34.434 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:34.434 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:34.434 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:35:34.434 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:34.434 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:35:34.434 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:35:34.444 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:35:34.444 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:35:34.454 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:35:34.454 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:35:34.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:35:34.504 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:35:34.804 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:35:34.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:35:34.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:35:34.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:35:34.844 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:35:34.844 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 06:35:34.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 06:35:34.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:35:34.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:34.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:35:34.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:35:35.044 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:35.044 -07 000000606 INF: Autofocus start
17-03-18 06:35:35.044 -07 000000606 INF: MeasureProfile start
17-03-18 06:35:35.044 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:35.054 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:35:35.054 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:35:35.054 -07 000000606 INF: MeasureProfile done
17-03-18 06:35:35.054 -07 000000606 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:35:35.054 -07 000000606 INF: Autofocus finished
17-03-18 06:35:35.254 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:35:35.254 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:35:35.254 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.177826474892038. ----------
17-03-18 06:35:35.254 -07 000000610 INF: Cycle	151	Tile	2	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:35:35.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37358, sync = True, waitForSettling = True)
17-03-18 06:35:35.264 -07 000000610 INF: Z Motor: Moving to -0.171014 mm, started at -0.177826 mm, distance = 6.81 um
17-03-18 06:35:35.264 -07 000000610 INF: FPGA: Xmit ZDACW 37358\n [Z Motor]
17-03-18 06:35:35.264 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:35:35.274 -07 000000610 INF: FPGA: 'ZDACW 37358' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:35.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:35.274 -07 000000591 INF: FPGA: Recv ZDACR 37358
17-03-18 06:35:35.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:35.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:35:35.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:35.434 -07 000000501 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:35:35.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:35.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:35.444 -07 000000447 INF: FPGA: Recv ZSGSRD 35914
17-03-18 06:35:35.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:35.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:35.454 -07 000000437 INF: FPGA: Recv ZSGSRD 35917
17-03-18 06:35:35.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:35.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:35.464 -07 000000561 INF: FPGA: Recv ZSGSRD 35907
17-03-18 06:35:35.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:35.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:35.474 -07 000000455 INF: FPGA: Recv ZSGSRD 35908
17-03-18 06:35:35.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:35.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:35.484 -07 000000626 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:35:35.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:35.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:35.494 -07 000000569 INF: FPGA: Recv ZSGSRD 35910
17-03-18 06:35:35.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:35.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:35.504 -07 000000461 INF: FPGA: Recv ZSGSRD 35904
17-03-18 06:35:35.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:35.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:35.514 -07 000000455 INF: FPGA: Recv ZSGSRD 35905
17-03-18 06:35:35.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:35.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:35.524 -07 000000591 INF: FPGA: Recv ZSGSRD 35916
17-03-18 06:35:35.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:35.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:35.534 -07 000000569 INF: FPGA: Recv ZPIEZORD 31718
17-03-18 06:35:35.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:35.544 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.2 V.
17-03-18 06:35:35.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35910 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35910 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35904 (-170.1 uncal um), Max = 35917 (-170.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:35:35.544 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35910, posNoise = 7, negNoise = 6
17-03-18 06:35:35.544 -07 000000610 INF: Z Motor: After move to -0.171014, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:35.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:35:35.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:35.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:35.544 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:35.544 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:35:35.544 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:35.544 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:35.544 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:35:35.544 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:35:35.544 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:35:35.544 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:35:35.544 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:35:35.544 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:35:35.554 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:35:35.554 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:35:35.554 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:35:35.554 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:35:35.564 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:35:35.564 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:35:35.564 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 06:35:35.564 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:35:35.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37534 150\n [Camera]
17-03-18 06:35:35.764 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:35:36.234 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:35:36.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:35:36.234 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:36.234 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:36.234 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:35:36.234 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:35:36.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:35:36.234 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:36.234 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:36.234 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 06:35:36.424 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37534 848
17-03-18 06:35:36.574 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:35:36.624 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:35:36.624 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:35:36.624 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:36.634 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:36.634 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:35:36.634 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:35:36.634 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:35:36.634 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:36.634 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:36.644 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:35:36.794 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:35:36.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:35:36.794 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:36.794 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:36.794 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 06:35:36.794 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:35:36.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:35:36.804 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:36.804 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:36.804 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:35:36.984 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:35:36.984 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:35:36.984 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:35:36.984 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:35:36.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37534 150' command took 2 ms to send, 1408 ms to get response, and 1421 ms overall
17-03-18 06:35:36.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:35:36.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.171016810021771. ------
17-03-18 06:35:36.994 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:36.994 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17780 mm
17-03-18 06:35:36.994 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:35:36.994 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:35:36.994 -07 000000561 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 06:35:36.994 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38840, sync = True, waitForSettling = False)
17-03-18 06:35:36.994 -07 000000382 INF: Z Motor: Moving to -0.177798 mm, started at -0.171017 mm, distance = -6.78 um
17-03-18 06:35:36.994 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:37.004 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:35:37.004 -07 000000382 INF: FPGA: Xmit ZDACW 38840\n [Z Motor]
17-03-18 06:35:37.004 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:35:37.014 -07 000000382 INF: FPGA: 'ZDACW 38840' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:35:37.014 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:37.014 -07 000000501 INF: FPGA: Recv ZDACR 38840
17-03-18 06:35:37.024 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:37.024 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:37.024 -07 000000382 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 06:35:37.024 -07 000000569 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:35:37.034 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 06:35:37.034 -07 000000561 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:37.034 -07 000000561 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:35:37.034 -07 000000561 INF: Y Motor: Moving 1345 steps-23
17-03-18 06:35:37.034 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:35:37.044 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:35:37.194 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:35:37.194 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:35:37.194 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:37.194 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:35:37.194 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:35:37.194 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:37.204 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:35:37.204 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:35:37.204 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:35:37.204 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:35:37.234 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:35:37.234 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 233 ms overall
17-03-18 06:35:37.414 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:35:37.414 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:35:37.474 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:37.474 -07 000000608 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:35:37.484 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:35:37.484 -07 000000561 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:37.484 -07 000000561 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:35:37.484 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.841 mm, average velocity = 2.167 mm/sec
17-03-18 06:35:37.754 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.052111,
17-03-18 06:35:38.434 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:38.434 -07 000000569 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:35:38.444 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:38.444 -07 000000561 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:38.474 -07 000000561 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:35:38.474 -07 000000561 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:35:38.474 -07 000000561 INF: Y Motor: Moved to 61.5625 after 1475 ms (table move)
17-03-18 06:35:38.474 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177798 mm (DAC = 38840)
17-03-18 06:35:38.474 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:38.484 -07 000000561 INF: FPGA: Recv ZSGSRD 36967
17-03-18 06:35:38.484 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:35:38.484 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:38.484 -07 000000608 INF: FPGA: Recv ZSGSRD 36969
17-03-18 06:35:38.494 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:38.494 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:38.494 -07 000000608 INF: FPGA: Recv ZSGSRD 36965
17-03-18 06:35:38.504 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:38.504 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:38.504 -07 000000561 INF: FPGA: Recv ZSGSRD 36963
17-03-18 06:35:38.514 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:38.514 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:38.514 -07 000000561 INF: FPGA: Recv ZSGSRD 36968
17-03-18 06:35:38.524 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:38.524 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:38.524 -07 000000608 INF: FPGA: Recv ZSGSRD 36962
17-03-18 06:35:38.534 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:38.534 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:38.534 -07 000000561 INF: FPGA: Recv ZSGSRD 36966
17-03-18 06:35:38.544 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:38.544 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:38.544 -07 000000561 INF: FPGA: Recv ZSGSRD 36965
17-03-18 06:35:38.554 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:38.554 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:38.554 -07 000000608 INF: FPGA: Recv ZSGSRD 36967
17-03-18 06:35:38.564 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:38.564 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:38.564 -07 000000608 INF: FPGA: Recv ZSGSRD 36967
17-03-18 06:35:38.574 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:38.574 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:38.574 -07 000000561 INF: FPGA: Recv ZPIEZORD 33169
17-03-18 06:35:38.584 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:38.584 -07 000000438 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.4 V.
17-03-18 06:35:38.584 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36966 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36966 (-176.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36962 (-176.9 uncal um), Max = 36969 (-176.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:35:38.584 -07 000000438 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36966, posNoise = 3, negNoise = 4
17-03-18 06:35:38.584 -07 000000438 INF: Z Motor: After move to -0.177798, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:38.584 -07 000000438 INF: Z Motor: Settle wait time = 1478 ms, measure time = 104 ms (allowed 150 ms), total time = 1582 ms
17-03-18 06:35:38.584 -07 000000438 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:35:38.634 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 06:35:38.634 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:35:38.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:38.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:38.634 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:38.634 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:38.634 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:35:38.634 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:38.644 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:35:38.644 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:35:38.644 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:35:38.644 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:35:38.654 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:35:38.654 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:35:38.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:35:38.704 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:35:39.004 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:35:39.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:35:39.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:35:39.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:35:39.044 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:35:39.044 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:35:39.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 06:35:39.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:35:39.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:39.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:35:39.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:35:39.144 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:39.144 -07 000000608 INF: Autofocus start
17-03-18 06:35:39.144 -07 000000608 INF: MeasureProfile start
17-03-18 06:35:39.144 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:39.154 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:35:39.154 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:35:39.154 -07 000000608 INF: MeasureProfile done
17-03-18 06:35:39.154 -07 000000608 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:35:39.154 -07 000000608 INF: Autofocus finished
17-03-18 06:35:39.354 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:35:39.354 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:35:39.354 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.17780077804347. ----------
17-03-18 06:35:39.354 -07 000000610 INF: Cycle	151	Tile	3	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:35:39.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37337, sync = True, waitForSettling = True)
17-03-18 06:35:39.364 -07 000000610 INF: Z Motor: Moving to -0.170918 mm, started at -0.177801 mm, distance = 6.88 um
17-03-18 06:35:39.364 -07 000000610 INF: FPGA: Xmit ZDACW 37337\n [Z Motor]
17-03-18 06:35:39.364 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:35:39.374 -07 000000610 INF: FPGA: 'ZDACW 37337' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:39.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:39.374 -07 000000569 INF: FPGA: Recv ZDACR 37337
17-03-18 06:35:39.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:39.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:35:39.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:39.534 -07 000000569 INF: FPGA: Recv ZSGSRD 35893
17-03-18 06:35:39.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:39.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:39.544 -07 000000569 INF: FPGA: Recv ZSGSRD 35897
17-03-18 06:35:39.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:39.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:39.554 -07 000000569 INF: FPGA: Recv ZSGSRD 35899
17-03-18 06:35:39.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:39.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:39.564 -07 000000569 INF: FPGA: Recv ZSGSRD 35894
17-03-18 06:35:39.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:39.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:39.574 -07 000000569 INF: FPGA: Recv ZSGSRD 35901
17-03-18 06:35:39.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:39.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:39.584 -07 000000569 INF: FPGA: Recv ZSGSRD 35892
17-03-18 06:35:39.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:39.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:39.594 -07 000000569 INF: FPGA: Recv ZSGSRD 35899
17-03-18 06:35:39.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:39.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:39.604 -07 000000561 INF: FPGA: Recv ZSGSRD 35901
17-03-18 06:35:39.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:39.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:39.614 -07 000000561 INF: FPGA: Recv ZSGSRD 35897
17-03-18 06:35:39.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:39.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:39.624 -07 000000561 INF: FPGA: Recv ZSGSRD 35897
17-03-18 06:35:39.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:39.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:39.634 -07 000000438 INF: FPGA: Recv ZPIEZORD 31719
17-03-18 06:35:39.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:39.644 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.697 V. Piezo Error = -9.2 V.
17-03-18 06:35:39.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35897 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35897 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35892 (-170.0 uncal um), Max = 35901 (-170.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:35:39.644 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35897, posNoise = 4, negNoise = 5
17-03-18 06:35:39.644 -07 000000610 INF: Z Motor: After move to -0.170918, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:39.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:35:39.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:39.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:39.644 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:39.644 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:39.644 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:35:39.644 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:39.644 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:35:39.644 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:35:39.644 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:35:39.644 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:35:39.644 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:35:39.644 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:35:39.644 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:35:39.654 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:35:39.654 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:35:39.654 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:35:39.654 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:35:39.654 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:35:39.654 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:35:39.654 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:35:39.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37514 150\n [Camera]
17-03-18 06:35:39.864 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:35:40.324 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:35:40.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:35:40.324 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:40.324 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:35:40.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:35:40.324 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:40.334 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:40.334 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:35:40.334 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:40.334 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:35:40.514 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37514 848
17-03-18 06:35:40.664 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:35:40.714 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:35:40.714 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:35:40.714 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:40.714 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:35:40.714 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:35:40.714 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:40.714 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:35:40.714 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:35:40.714 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:35:40.724 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:35:40.894 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:35:40.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:35:40.894 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:40.894 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:35:40.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:35:40.894 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:40.894 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:40.894 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:35:40.904 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:40.904 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 06:35:41.084 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:35:41.084 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:35:41.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37514 150' command took 5 ms to send, 1413 ms to get response, and 1420 ms overall
17-03-18 06:35:41.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:35:41.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.170933295263928. ------
17-03-18 06:35:41.094 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17709 mm
17-03-18 06:35:41.094 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:35:41.094 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:41.094 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:41.094 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38685, sync = True, waitForSettling = False)
17-03-18 06:35:41.094 -07 000000590 INF: Z Motor: Moving to -0.177089 mm, started at -0.170933 mm, distance = -6.16 um
17-03-18 06:35:41.094 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:35:41.094 -07 000000438 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 06:35:41.104 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:41.104 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:41.104 -07 000000382 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:35:41.114 -07 000000590 INF: FPGA: Xmit ZDACW 38685\n [Z Motor]
17-03-18 06:35:41.114 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:35:41.114 -07 000000438 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:41.114 -07 000000438 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:35:41.114 -07 000000438 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:35:41.114 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:35:41.124 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:35:41.124 -07 000000590 INF: FPGA: 'ZDACW 38685' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:35:41.134 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:35:41.144 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:41.144 -07 000000608 INF: FPGA: Recv ZDACR 38685
17-03-18 06:35:41.154 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:35:41.154 -07 000000590 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 06:35:41.284 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 06:35:41.284 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:35:41.284 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:41.284 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:35:41.284 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:35:41.284 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:41.284 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:41.284 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:41.284 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:35:41.294 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:35:41.324 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:35:41.324 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:35:41.504 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:35:41.504 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:35:41.564 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:41.564 -07 000000569 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:35:41.574 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:41.574 -07 000000438 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:41.574 -07 000000438 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:35:41.574 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 06:35:41.874 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:35:41.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:35:42.524 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:42.524 -07 000000382 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:35:42.534 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:42.534 -07 000000438 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:42.564 -07 000000438 INF: Y Motor: After move to 62.402607, error = -0.008564, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:35:42.564 -07 000000438 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:35:42.564 -07 000000438 INF: Y Motor: Moved to 62.3940 after 1468 ms (table move)
17-03-18 06:35:42.564 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177089 mm (DAC = 38685)
17-03-18 06:35:42.564 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:42.564 -07 000000438 INF: FPGA: Recv ZSGSRD 36862
17-03-18 06:35:42.574 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:35:42.574 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:42.574 -07 000000569 INF: FPGA: Recv ZSGSRD 36853
17-03-18 06:35:42.584 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:42.584 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:42.584 -07 000000569 INF: FPGA: Recv ZSGSRD 36850
17-03-18 06:35:42.594 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:42.594 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:42.594 -07 000000569 INF: FPGA: Recv ZSGSRD 36855
17-03-18 06:35:42.604 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:42.604 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:42.604 -07 000000626 INF: FPGA: Recv ZSGSRD 36855
17-03-18 06:35:42.614 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:42.614 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:42.614 -07 000000569 INF: FPGA: Recv ZSGSRD 36851
17-03-18 06:35:42.624 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:35:42.624 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:42.624 -07 000000626 INF: FPGA: Recv ZSGSRD 36856
17-03-18 06:35:42.634 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:42.634 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:42.634 -07 000000606 INF: FPGA: Recv ZSGSRD 36866
17-03-18 06:35:42.644 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:42.644 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:42.644 -07 000000382 INF: FPGA: Recv ZSGSRD 36857
17-03-18 06:35:42.654 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:42.654 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:42.654 -07 000000461 INF: FPGA: Recv ZSGSRD 36852
17-03-18 06:35:42.664 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:42.664 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:42.664 -07 000000626 INF: FPGA: Recv ZPIEZORD 33016
17-03-18 06:35:42.674 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:42.674 -07 000000591 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.903 V. Piezo Error = -8.5 V.
17-03-18 06:35:42.674 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36856 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36855 (-176.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36850 (-176.2 uncal um), Max = 36866 (-176.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:35:42.674 -07 000000591 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36856, posNoise = 10, negNoise = 6
17-03-18 06:35:42.674 -07 000000591 INF: Z Motor: After move to -0.177089, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:42.674 -07 000000591 INF: Z Motor: Settle wait time = 1471 ms, measure time = 105 ms (allowed 150 ms), total time = 1576 ms
17-03-18 06:35:42.674 -07 000000591 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:35:42.724 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 06:35:42.724 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:35:42.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:42.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:42.724 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:42.724 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:42.724 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:35:42.724 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:42.724 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:35:42.734 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:35:42.734 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:35:42.734 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:35:42.744 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:35:42.744 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:35:42.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:35:42.784 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:35:43.084 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:35:43.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:35:43.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:35:43.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 597333880, 0x0, 559484976) start.
17-03-18 06:35:43.114 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.027603,
17-03-18 06:35:43.124 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:35:43.124 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 06:35:43.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:35:43.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 597333880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:35:43.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:43.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:35:43.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:35:43.224 -07 000000590 INF: Autofocus start
17-03-18 06:35:43.224 -07 000000590 INF: MeasureProfile start
17-03-18 06:35:43.224 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:43.224 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:43.234 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:35:43.234 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:35:43.234 -07 000000590 INF: MeasureProfile done
17-03-18 06:35:43.234 -07 000000590 INF: X=64  Z correction [um]=0.2557664
17-03-18 06:35:43.234 -07 000000590 INF: Autofocus finished
17-03-18 06:35:43.434 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:35:43.434 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:35:43.434 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39404296875, Z-position -0.177094114707877. ----------
17-03-18 06:35:43.434 -07 000000610 INF: Cycle	151	Tile	4	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:35:43.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37253, sync = True, waitForSettling = True)
17-03-18 06:35:43.444 -07 000000610 INF: Z Motor: Moving to -0.170533 mm, started at -0.177094 mm, distance = 6.56 um
17-03-18 06:35:43.444 -07 000000610 INF: FPGA: Xmit ZDACW 37253\n [Z Motor]
17-03-18 06:35:43.444 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:35:43.454 -07 000000610 INF: FPGA: 'ZDACW 37253' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:35:43.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:43.454 -07 000000461 INF: FPGA: Recv ZDACR 37253
17-03-18 06:35:43.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:43.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:35:43.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:43.614 -07 000000606 INF: FPGA: Recv ZSGSRD 35833
17-03-18 06:35:43.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:43.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:43.624 -07 000000461 INF: FPGA: Recv ZSGSRD 35833
17-03-18 06:35:43.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:43.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:43.634 -07 000000591 INF: FPGA: Recv ZSGSRD 35840
17-03-18 06:35:43.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:43.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:43.644 -07 000000626 INF: FPGA: Recv ZSGSRD 35836
17-03-18 06:35:43.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:43.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:43.654 -07 000000606 INF: FPGA: Recv ZSGSRD 35840
17-03-18 06:35:43.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:43.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:43.664 -07 000000626 INF: FPGA: Recv ZSGSRD 35835
17-03-18 06:35:43.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:43.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:43.674 -07 000000447 INF: FPGA: Recv ZSGSRD 35834
17-03-18 06:35:43.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:43.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:43.684 -07 000000626 INF: FPGA: Recv ZSGSRD 35840
17-03-18 06:35:43.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:43.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:43.694 -07 000000561 INF: FPGA: Recv ZSGSRD 35831
17-03-18 06:35:43.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:43.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:43.704 -07 000000626 INF: FPGA: Recv ZSGSRD 35835
17-03-18 06:35:43.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:43.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:43.714 -07 000000561 INF: FPGA: Recv ZPIEZORD 31661
17-03-18 06:35:43.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:43.724 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -9.2 V.
17-03-18 06:35:43.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35836 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35835 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35831 (-169.6 uncal um), Max = 35840 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:35:43.724 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35836, posNoise = 4, negNoise = 5
17-03-18 06:35:43.724 -07 000000610 INF: Z Motor: After move to -0.170533, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:43.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:35:43.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:43.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:43.724 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:43.724 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:43.724 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:35:43.724 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:35:43.724 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:35:43.724 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:43.724 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:35:43.724 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:35:43.734 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:35:43.734 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:35:43.734 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:35:43.734 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:35:43.734 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:35:43.734 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:35:43.744 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:35:43.744 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:35:43.744 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:35:43.744 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:35:43.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37430 150\n [Camera]
17-03-18 06:35:43.944 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:35:44.414 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-18 06:35:44.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-18 06:35:44.414 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:44.414 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:44.414 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:35:44.414 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-18 06:35:44.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-18 06:35:44.414 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:44.414 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:44.414 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:35:44.604 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37430 848
17-03-18 06:35:44.744 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:35:44.804 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:35:44.804 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:35:44.804 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:44.804 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 06:35:44.804 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:35:44.804 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:44.804 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:44.804 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:35:44.804 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:44.814 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:35:44.974 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:35:44.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:35:44.974 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:44.974 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:44.974 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:35:44.974 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:35:44.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:35:44.974 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:44.974 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:44.974 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:35:45.164 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:35:45.164 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:35:45.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37430 150' command took 2 ms to send, 1415 ms to get response, and 1420 ms overall
17-03-18 06:35:45.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:35:45.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39404296875, Z-Position -0.170541418323281. ------
17-03-18 06:35:45.164 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:45.174 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17684 mm
17-03-18 06:35:45.174 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:35:45.174 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:45.174 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38630, sync = True, waitForSettling = False)
17-03-18 06:35:45.174 -07 000000461 INF: Z Motor: Moving to -0.176837 mm, started at -0.170541 mm, distance = -6.30 um
17-03-18 06:35:45.174 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:35:45.174 -07 000000437 INF: Y Motor: Moving to 63.2326 mm, started at 62.3940 mm, delta = 0.8386 mm
17-03-18 06:35:45.184 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:45.184 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:45.314 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:35:45.314 -07 000000590 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:35:45.314 -07 000000437 INF: FPGA: 'YRDPOS' command took 128 ms to send, 1 ms to get response, and 137 ms overall
17-03-18 06:35:45.314 -07 000000437 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:45.314 -07 000000437 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:35:45.314 -07 000000437 INF: Y Motor: Moving 1341 steps-18
17-03-18 06:35:45.324 -07 000000461 INF: FPGA: Xmit ZDACW 38630\n [Z Motor]
17-03-18 06:35:45.324 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:35:45.334 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:35:45.334 -07 000000461 INF: FPGA: 'ZDACW 38630' command took 0 ms to send, 0 ms to get response, and 156 ms overall
17-03-18 06:35:45.344 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:45.344 -07 000000455 INF: FPGA: Recv ZDACR 38630
17-03-18 06:35:45.354 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:35:45.354 -07 000000461 INF: Z Motor: MoveAbsStepped took 177 ms (did NOT wait for settling yet))
17-03-18 06:35:45.374 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:35:45.374 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:35:45.374 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:45.384 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 06:35:45.384 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:35:45.384 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:45.384 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:35:45.384 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:35:45.384 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:45.394 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:35:45.514 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:35:45.514 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 332 ms overall
17-03-18 06:35:45.704 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 06:35:45.704 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:35:45.764 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:45.764 -07 000000561 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:35:45.774 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:45.774 -07 000000437 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:45.774 -07 000000437 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:35:45.774 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.139 mm/sec
17-03-18 06:35:46.724 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:46.724 -07 000000447 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:35:46.734 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:46.734 -07 000000437 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:46.764 -07 000000437 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:35:46.764 -07 000000437 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:35:46.764 -07 000000437 INF: Y Motor: Moved to 63.2227 after 1591 ms (table move)
17-03-18 06:35:46.764 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176837 mm (DAC = 38630)
17-03-18 06:35:46.764 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:46.774 -07 000000455 INF: FPGA: Recv ZSGSRD 36819
17-03-18 06:35:46.774 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:35:46.774 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:46.774 -07 000000437 INF: FPGA: Recv ZSGSRD 36814
17-03-18 06:35:46.784 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:35:46.784 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:46.784 -07 000000461 INF: FPGA: Recv ZSGSRD 36817
17-03-18 06:35:46.794 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:46.794 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:46.794 -07 000000461 INF: FPGA: Recv ZSGSRD 36819
17-03-18 06:35:46.804 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:46.804 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:46.804 -07 000000461 INF: FPGA: Recv ZSGSRD 36822
17-03-18 06:35:46.814 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:46.814 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:46.814 -07 000000461 INF: FPGA: Recv ZSGSRD 36811
17-03-18 06:35:46.824 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:46.824 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:46.824 -07 000000591 INF: FPGA: Recv ZSGSRD 36811
17-03-18 06:35:46.834 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:46.834 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:46.834 -07 000000438 INF: FPGA: Recv ZSGSRD 36820
17-03-18 06:35:46.844 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:46.844 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:46.844 -07 000000438 INF: FPGA: Recv ZSGSRD 36816
17-03-18 06:35:46.854 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:46.854 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:46.854 -07 000000438 INF: FPGA: Recv ZSGSRD 36815
17-03-18 06:35:46.864 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:46.864 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:46.864 -07 000000438 INF: FPGA: Recv ZPIEZORD 33013
17-03-18 06:35:46.874 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:46.874 -07 000000606 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.895 V. Piezo Error = -8.4 V.
17-03-18 06:35:46.874 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36816 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36816 (-175.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36811 (-175.9 uncal um), Max = 36822 (-176.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:35:46.874 -07 000000606 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36816, posNoise = 6, negNoise = 5
17-03-18 06:35:46.874 -07 000000606 INF: Z Motor: After move to -0.176837, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:46.874 -07 000000606 INF: Z Motor: Settle wait time = 1595 ms, measure time = 102 ms (allowed 150 ms), total time = 1697 ms
17-03-18 06:35:46.874 -07 000000606 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:35:46.874 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:35:46.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:35:46.924 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1749 ms
17-03-18 06:35:46.924 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:35:46.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:46.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:46.924 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:46.924 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:46.924 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:35:46.924 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:46.924 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:35:46.924 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:35:46.934 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:35:46.934 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:35:46.934 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:35:46.934 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:35:46.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:35:46.984 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:35:47.284 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:35:47.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:35:47.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:35:47.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:35:47.324 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:35:47.324 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 06:35:47.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:35:47.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:35:47.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:47.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:35:47.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:35:47.424 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:47.424 -07 000000382 INF: Autofocus start
17-03-18 06:35:47.424 -07 000000382 INF: MeasureProfile start
17-03-18 06:35:47.424 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:47.434 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:35:47.434 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:35:47.434 -07 000000382 INF: MeasureProfile done
17-03-18 06:35:47.434 -07 000000382 INF: X=64  Z correction [um]=0.2557664
17-03-18 06:35:47.434 -07 000000382 INF: Autofocus finished
17-03-18 06:35:47.634 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:35:47.634 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:35:47.634 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.176837146222206. ----------
17-03-18 06:35:47.634 -07 000000610 INF: Cycle	151	Tile	5	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:35:47.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37199, sync = True, waitForSettling = True)
17-03-18 06:35:47.644 -07 000000610 INF: Z Motor: Moving to -0.170286 mm, started at -0.176837 mm, distance = 6.55 um
17-03-18 06:35:47.644 -07 000000610 INF: FPGA: Xmit ZDACW 37199\n [Z Motor]
17-03-18 06:35:47.644 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:35:47.654 -07 000000610 INF: FPGA: 'ZDACW 37199' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:35:47.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:47.654 -07 000000437 INF: FPGA: Recv ZDACR 37199
17-03-18 06:35:47.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:47.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:35:47.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:47.814 -07 000000455 INF: FPGA: Recv ZSGSRD 35800
17-03-18 06:35:47.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:47.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:47.824 -07 000000437 INF: FPGA: Recv ZSGSRD 35798
17-03-18 06:35:47.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:47.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:47.834 -07 000000590 INF: FPGA: Recv ZSGSRD 35799
17-03-18 06:35:47.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:47.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:47.844 -07 000000501 INF: FPGA: Recv ZSGSRD 35802
17-03-18 06:35:47.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:47.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:47.854 -07 000000437 INF: FPGA: Recv ZSGSRD 35794
17-03-18 06:35:47.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:47.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:47.864 -07 000000590 INF: FPGA: Recv ZSGSRD 35798
17-03-18 06:35:47.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:47.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:47.874 -07 000000626 INF: FPGA: Recv ZSGSRD 35795
17-03-18 06:35:47.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:47.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:47.884 -07 000000590 INF: FPGA: Recv ZSGSRD 35797
17-03-18 06:35:47.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:47.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:47.894 -07 000000626 INF: FPGA: Recv ZSGSRD 35797
17-03-18 06:35:47.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:47.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:47.904 -07 000000591 INF: FPGA: Recv ZSGSRD 35798
17-03-18 06:35:47.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:47.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:47.914 -07 000000626 INF: FPGA: Recv ZPIEZORD 31646
17-03-18 06:35:47.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:47.924 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.676 V. Piezo Error = -9.2 V.
17-03-18 06:35:47.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35798 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35798 (-169.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35794 (-169.4 uncal um), Max = 35802 (-169.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:35:47.924 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35798, posNoise = 4, negNoise = 4
17-03-18 06:35:47.924 -07 000000610 INF: Z Motor: After move to -0.170286, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:47.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:35:47.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:47.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:47.924 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:47.924 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:47.924 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:35:47.924 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:47.924 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:35:47.924 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:35:47.924 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:35:47.924 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:35:47.924 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:35:47.924 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:35:47.934 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:35:47.934 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:35:47.934 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:35:47.934 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:35:47.934 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:35:47.934 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:35:47.934 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:35:47.944 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:35:47.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37375 150\n [Camera]
17-03-18 06:35:48.144 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:35:48.474 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.994908,
17-03-18 06:35:48.604 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:35:48.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:35:48.614 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:48.614 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:35:48.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:35:48.614 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:48.614 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:48.614 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:35:48.614 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:48.614 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:35:48.794 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37375 848
17-03-18 06:35:48.944 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:35:48.994 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:35:48.994 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:35:48.994 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:48.994 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:48.994 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:35:48.994 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:35:48.994 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:49.004 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:49.004 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:35:49.004 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:35:49.174 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:35:49.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:35:49.174 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:49.174 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:49.174 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:35:49.174 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:35:49.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:35:49.174 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:49.174 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:49.294 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:35:49.364 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-18 06:35:49.364 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:35:49.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37375 150' command took 2 ms to send, 1414 ms to get response, and 1420 ms overall
17-03-18 06:35:49.364 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:35:49.364 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.170297298261894. ------
17-03-18 06:35:49.374 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:49.374 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17663 mm
17-03-18 06:35:49.374 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:35:49.374 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:35:49.374 -07 000000437 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 06:35:49.374 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:49.374 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38585, sync = True, waitForSettling = False)
17-03-18 06:35:49.374 -07 000000590 INF: Z Motor: Moving to -0.176631 mm, started at -0.170297 mm, distance = -6.33 um
17-03-18 06:35:49.384 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:35:49.384 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:49.384 -07 000000438 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:35:49.394 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:35:49.394 -07 000000437 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:49.394 -07 000000437 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:35:49.394 -07 000000437 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:35:49.394 -07 000000590 INF: FPGA: Xmit ZDACW 38585\n [Z Motor]
17-03-18 06:35:49.394 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:35:49.404 -07 000000590 INF: FPGA: 'ZDACW 38585' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:35:49.404 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:35:49.414 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:35:49.424 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:49.424 -07 000000438 INF: FPGA: Recv ZDACR 38585
17-03-18 06:35:49.434 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:35:49.434 -07 000000590 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 06:35:49.564 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:35:49.564 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:35:49.564 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:49.574 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:49.574 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:35:49.604 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:35:49.604 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:35:49.674 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 502 ms.
17-03-18 06:35:49.674 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-18 06:35:49.674 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:49.684 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:49.684 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-18 06:35:49.784 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:35:49.784 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:35:49.834 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:49.844 -07 000000608 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:35:49.844 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:35:49.844 -07 000000437 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:49.844 -07 000000437 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 06:35:49.844 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 06:35:50.794 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:50.794 -07 000000608 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:35:50.804 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:50.804 -07 000000437 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:50.834 -07 000000437 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:35:50.834 -07 000000437 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:35:50.834 -07 000000437 INF: Y Motor: Moved to 64.0557 after 1456 ms (table move)
17-03-18 06:35:50.834 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176631 mm (DAC = 38585)
17-03-18 06:35:50.834 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:50.834 -07 000000626 INF: FPGA: Recv ZSGSRD 36792
17-03-18 06:35:50.844 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:35:50.844 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:50.844 -07 000000606 INF: FPGA: Recv ZSGSRD 36787
17-03-18 06:35:50.854 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:50.854 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:50.854 -07 000000455 INF: FPGA: Recv ZSGSRD 36776
17-03-18 06:35:50.864 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:50.864 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:50.864 -07 000000455 INF: FPGA: Recv ZSGSRD 36777
17-03-18 06:35:50.874 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:50.874 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:50.874 -07 000000455 INF: FPGA: Recv ZSGSRD 36785
17-03-18 06:35:50.884 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:50.884 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:50.884 -07 000000561 INF: FPGA: Recv ZSGSRD 36785
17-03-18 06:35:50.894 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:50.894 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:50.894 -07 000000561 INF: FPGA: Recv ZSGSRD 36785
17-03-18 06:35:50.904 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:50.904 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:50.904 -07 000000561 INF: FPGA: Recv ZSGSRD 36788
17-03-18 06:35:50.914 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:50.914 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:50.914 -07 000000382 INF: FPGA: Recv ZSGSRD 36789
17-03-18 06:35:50.924 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:50.924 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:50.924 -07 000000437 INF: FPGA: Recv ZSGSRD 36792
17-03-18 06:35:50.934 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:50.934 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:50.934 -07 000000437 INF: FPGA: Recv ZPIEZORD 32961
17-03-18 06:35:50.944 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:50.944 -07 000000501 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.888 V. Piezo Error = -8.5 V.
17-03-18 06:35:50.944 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36786 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36786 (-175.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36776 (-175.7 uncal um), Max = 36792 (-175.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:35:50.944 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36786, posNoise = 6, negNoise = 10
17-03-18 06:35:50.944 -07 000000501 INF: Z Motor: After move to -0.176631, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:50.944 -07 000000501 INF: Z Motor: Settle wait time = 1460 ms, measure time = 105 ms (allowed 150 ms), total time = 1565 ms
17-03-18 06:35:50.944 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:35:50.994 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 06:35:50.994 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:35:50.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:50.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:50.994 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:35:50.994 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:50.994 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:50.994 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:35:50.994 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:35:50.994 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:51.004 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:35:51.004 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:35:51.004 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:35:51.004 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:35:51.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:35:51.054 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:35:51.354 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:35:51.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:35:51.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:35:51.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:35:51.394 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:35:51.394 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:35:51.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 06:35:51.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:35:51.474 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:51.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:35:51.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:35:51.494 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:51.494 -07 000000590 INF: Autofocus start
17-03-18 06:35:51.494 -07 000000590 INF: MeasureProfile start
17-03-18 06:35:51.494 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:51.504 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:35:51.504 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:35:51.504 -07 000000590 INF: MeasureProfile done
17-03-18 06:35:51.504 -07 000000590 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:35:51.504 -07 000000590 INF: Autofocus finished
17-03-18 06:35:51.704 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:35:51.704 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:35:51.714 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176644419857953. ----------
17-03-18 06:35:51.714 -07 000000610 INF: Cycle	151	Tile	6	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:35:51.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37118, sync = True, waitForSettling = True)
17-03-18 06:35:51.714 -07 000000610 INF: Z Motor: Moving to -0.169915 mm, started at -0.176644 mm, distance = 6.73 um
17-03-18 06:35:51.714 -07 000000610 INF: FPGA: Xmit ZDACW 37118\n [Z Motor]
17-03-18 06:35:51.714 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:35:51.724 -07 000000610 INF: FPGA: 'ZDACW 37118' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:35:51.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:51.724 -07 000000626 INF: FPGA: Recv ZDACR 37118
17-03-18 06:35:51.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:51.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:35:51.874 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:35:51.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:35:51.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:51.884 -07 000000561 INF: FPGA: Recv ZSGSRD 35737
17-03-18 06:35:51.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:51.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:51.894 -07 000000590 INF: FPGA: Recv ZSGSRD 35741
17-03-18 06:35:51.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:51.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:51.904 -07 000000561 INF: FPGA: Recv ZSGSRD 35741
17-03-18 06:35:51.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:51.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:51.914 -07 000000590 INF: FPGA: Recv ZSGSRD 35744
17-03-18 06:35:51.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:51.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:51.924 -07 000000437 INF: FPGA: Recv ZSGSRD 35744
17-03-18 06:35:51.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:51.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:51.934 -07 000000447 INF: FPGA: Recv ZSGSRD 35742
17-03-18 06:35:51.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:51.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:51.944 -07 000000590 INF: FPGA: Recv ZSGSRD 35735
17-03-18 06:35:51.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:51.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:51.954 -07 000000437 INF: FPGA: Recv ZSGSRD 35749
17-03-18 06:35:51.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:51.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:51.964 -07 000000590 INF: FPGA: Recv ZSGSRD 35741
17-03-18 06:35:51.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:51.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:51.974 -07 000000590 INF: FPGA: Recv ZSGSRD 35741
17-03-18 06:35:51.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:51.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:51.984 -07 000000437 INF: FPGA: Recv ZPIEZORD 31516
17-03-18 06:35:51.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:51.994 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -9.3 V.
17-03-18 06:35:51.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35742 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35741 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35735 (-169.0 uncal um), Max = 35749 (-169.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:35:51.994 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35742, posNoise = 7, negNoise = 7
17-03-18 06:35:51.994 -07 000000610 INF: Z Motor: After move to -0.169915, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:51.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:35:51.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:51.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:51.994 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:35:51.994 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:51.994 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:51.994 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:35:51.994 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:35:51.994 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:51.994 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:35:51.994 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:35:51.994 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:35:51.994 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:35:52.004 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:35:52.004 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:35:52.004 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:35:52.004 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:35:52.014 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:35:52.014 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:35:52.014 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:35:52.014 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:35:52.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37295 150\n [Camera]
17-03-18 06:35:52.214 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:35:52.684 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:35:52.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:35:52.684 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:52.684 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:52.684 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:35:52.684 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:35:52.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:35:52.684 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:52.694 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:52.694 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:35:52.874 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37295 848
17-03-18 06:35:53.024 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:35:53.074 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:35:53.074 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:35:53.074 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:53.084 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:53.084 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:35:53.084 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:35:53.084 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:35:53.084 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:53.094 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:53.094 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:35:53.244 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:35:53.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:35:53.244 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:53.244 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:35:53.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:35:53.244 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:53.254 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:53.254 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:35:53.254 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:53.254 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:35:53.434 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-18 06:35:53.434 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:35:53.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37295 150' command took 2 ms to send, 1418 ms to get response, and 1420 ms overall
17-03-18 06:35:53.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:35:53.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.169937542381955. ------
17-03-18 06:35:53.444 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:53.634 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:35:53.634 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:35:53.634 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:53.634 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:53.644 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:35:53.644 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:35:53.644 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:35:53.644 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:53.644 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:53.644 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:35:53.654 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:53.654 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 202 ms to get response, and 208 ms overall
17-03-18 06:35:53.654 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:35:53.654 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17633 mm
17-03-18 06:35:53.654 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:35:53.654 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:35:53.654 -07 000000382 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 06:35:53.654 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38520, sync = True, waitForSettling = False)
17-03-18 06:35:53.654 -07 000000591 INF: Z Motor: Moving to -0.176333 mm, started at -0.169938 mm, distance = -6.40 um
17-03-18 06:35:53.664 -07 000000591 INF: FPGA: Xmit ZDACW 38520\n [Z Motor]
17-03-18 06:35:53.664 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:35:53.674 -07 000000591 INF: FPGA: 'ZDACW 38520' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:35:53.674 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:53.674 -07 000000461 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:35:53.684 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:35:53.684 -07 000000382 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:53.684 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:53.684 -07 000000382 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:35:53.684 -07 000000382 INF: Y Motor: Moving 1338 steps-14
17-03-18 06:35:53.684 -07 000000438 INF: FPGA: Recv ZDACR 38520
17-03-18 06:35:53.694 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:35:53.694 -07 000000591 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 06:35:53.694 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:35:53.854 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:35:53.854 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:35:53.964 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.99219,
17-03-18 06:35:54.064 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:35:54.064 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 06:35:54.124 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:54.124 -07 000000461 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:35:54.134 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:35:54.134 -07 000000382 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:54.134 -07 000000382 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:35:54.134 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-18 06:35:55.084 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:55.084 -07 000000590 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:35:55.094 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:55.094 -07 000000382 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:55.124 -07 000000382 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:35:55.124 -07 000000382 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:35:55.124 -07 000000382 INF: Y Motor: Moved to 64.8774 after 1466 ms (table move)
17-03-18 06:35:55.124 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176333 mm (DAC = 38520)
17-03-18 06:35:55.124 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:55.124 -07 000000591 INF: FPGA: Recv ZSGSRD 36740
17-03-18 06:35:55.134 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:35:55.134 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:55.134 -07 000000561 INF: FPGA: Recv ZSGSRD 36741
17-03-18 06:35:55.144 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:55.144 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:55.144 -07 000000501 INF: FPGA: Recv ZSGSRD 36738
17-03-18 06:35:55.154 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:55.154 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:55.154 -07 000000590 INF: FPGA: Recv ZSGSRD 36739
17-03-18 06:35:55.164 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:55.164 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:55.164 -07 000000461 INF: FPGA: Recv ZSGSRD 36735
17-03-18 06:35:55.174 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:55.174 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:55.174 -07 000000501 INF: FPGA: Recv ZSGSRD 36737
17-03-18 06:35:55.184 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:55.184 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:55.184 -07 000000461 INF: FPGA: Recv ZSGSRD 36733
17-03-18 06:35:55.194 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:55.194 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:55.194 -07 000000501 INF: FPGA: Recv ZSGSRD 36739
17-03-18 06:35:55.204 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:55.204 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:55.204 -07 000000501 INF: FPGA: Recv ZSGSRD 36739
17-03-18 06:35:55.214 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:55.214 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:55.214 -07 000000501 INF: FPGA: Recv ZSGSRD 36737
17-03-18 06:35:55.224 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:55.224 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:55.224 -07 000000501 INF: FPGA: Recv ZPIEZORD 32859
17-03-18 06:35:55.234 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:55.234 -07 000000447 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.878 V. Piezo Error = -8.6 V.
17-03-18 06:35:55.234 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36738 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36738 (-175.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36733 (-175.4 uncal um), Max = 36741 (-175.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:35:55.234 -07 000000447 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36738, posNoise = 3, negNoise = 5
17-03-18 06:35:55.234 -07 000000447 INF: Z Motor: After move to -0.176333, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:55.234 -07 000000447 INF: Z Motor: Settle wait time = 1468 ms, measure time = 105 ms (allowed 150 ms), total time = 1573 ms
17-03-18 06:35:55.234 -07 000000447 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:35:55.284 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:35:55.284 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:35:55.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:55.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:55.284 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:55.284 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:55.284 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:35:55.284 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:55.284 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:35:55.294 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:35:55.294 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-18 06:35:55.294 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:35:55.304 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:35:55.304 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 21 ms.
17-03-18 06:35:55.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:35:55.354 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:35:55.654 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:35:55.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:35:55.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:35:55.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614208944, 0x0, 559484976) start.
17-03-18 06:35:55.694 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:35:55.694 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:35:55.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:35:55.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614208944, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:35:55.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:55.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:35:55.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:35:55.794 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:55.794 -07 000000447 INF: Autofocus start
17-03-18 06:35:55.794 -07 000000447 INF: MeasureProfile start
17-03-18 06:35:55.804 -07 000000447 INF: MeasureProfile done
17-03-18 06:35:55.804 -07 000000447 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 06:35:55.804 -07 000000447 INF: Autofocus finished
17-03-18 06:35:55.804 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:55.804 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 16 ms overall
17-03-18 06:35:55.814 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:35:56.014 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:35:56.014 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 06:35:56.014 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.176336057675149. ----------
17-03-18 06:35:56.024 -07 000000610 INF: Cycle	151	Tile	7	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:35:56.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37000, sync = True, waitForSettling = True)
17-03-18 06:35:56.024 -07 000000610 INF: Z Motor: Moving to -0.169375 mm, started at -0.176336 mm, distance = 6.96 um
17-03-18 06:35:56.024 -07 000000610 INF: FPGA: Xmit ZDACW 37000\n [Z Motor]
17-03-18 06:35:56.024 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:35:56.034 -07 000000610 INF: FPGA: 'ZDACW 37000' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:35:56.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:56.034 -07 000000447 INF: FPGA: Recv ZDACR 37000
17-03-18 06:35:56.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:56.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:35:56.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:56.194 -07 000000447 INF: FPGA: Recv ZSGSRD 35654
17-03-18 06:35:56.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:56.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:56.204 -07 000000447 INF: FPGA: Recv ZSGSRD 35660
17-03-18 06:35:56.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:56.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:56.214 -07 000000447 INF: FPGA: Recv ZSGSRD 35651
17-03-18 06:35:56.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:56.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:56.224 -07 000000447 INF: FPGA: Recv ZSGSRD 35646
17-03-18 06:35:56.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:56.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:56.234 -07 000000501 INF: FPGA: Recv ZSGSRD 35655
17-03-18 06:35:56.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:56.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:56.244 -07 000000501 INF: FPGA: Recv ZSGSRD 35652
17-03-18 06:35:56.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:56.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:56.254 -07 000000447 INF: FPGA: Recv ZSGSRD 35658
17-03-18 06:35:56.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:56.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:56.264 -07 000000501 INF: FPGA: Recv ZSGSRD 35644
17-03-18 06:35:56.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:56.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:56.274 -07 000000455 INF: FPGA: Recv ZSGSRD 35655
17-03-18 06:35:56.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:56.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:35:56.284 -07 000000501 INF: FPGA: Recv ZSGSRD 35657
17-03-18 06:35:56.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:56.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:35:56.294 -07 000000455 INF: FPGA: Recv ZPIEZORD 31403
17-03-18 06:35:56.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:56.304 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.4 V.
17-03-18 06:35:56.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35653 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35654 (-168.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35644 (-168.4 uncal um), Max = 35660 (-168.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:35:56.304 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35653, posNoise = 7, negNoise = 9
17-03-18 06:35:56.304 -07 000000610 INF: Z Motor: After move to -0.169375, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:35:56.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:35:56.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:35:56.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:35:56.304 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:35:56.304 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:35:56.304 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:35:56.304 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:35:56.304 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:35:56.304 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:35:56.304 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:35:56.304 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:35:56.304 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:35:56.304 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:35:56.304 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:35:56.314 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:35:56.314 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:35:56.314 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:35:56.324 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 06:35:56.324 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:35:56.324 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:35:56.324 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:35:56.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37177 150\n [Camera]
17-03-18 06:35:56.524 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:35:56.874 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:35:56.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:35:56.984 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:35:56.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:35:56.984 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:56.984 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:56.984 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:35:56.994 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:35:56.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:35:56.994 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:56.994 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:56.994 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:35:57.184 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37177 848
17-03-18 06:35:57.334 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:35:57.364 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:35:57.364 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:35:57.364 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:57.374 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:57.374 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:35:57.374 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:35:57.374 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:57.374 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:57.374 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:35:57.374 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:35:57.554 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:35:57.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:35:57.554 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:35:57.554 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:35:57.554 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:35:57.554 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:35:57.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:35:57.554 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:35:57.554 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:35:57.554 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:35:57.744 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:35:57.744 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:35:57.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37177 150' command took 2 ms to send, 1415 ms to get response, and 1421 ms overall
17-03-18 06:35:57.744 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:35:57.744 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.169365787501338. ------
17-03-18 06:35:57.754 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:35:57.754 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17619 mm
17-03-18 06:35:57.754 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:35:57.754 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:35:57.754 -07 000000447 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 06:35:57.754 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:35:57.754 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38489, sync = True, waitForSettling = False)
17-03-18 06:35:57.754 -07 000000569 INF: Z Motor: Moving to -0.176191 mm, started at -0.169366 mm, distance = -6.83 um
17-03-18 06:35:57.764 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:35:57.764 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:57.764 -07 000000501 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:35:57.774 -07 000000569 INF: FPGA: Xmit ZDACW 38489\n [Z Motor]
17-03-18 06:35:57.774 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:35:57.774 -07 000000447 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:57.774 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:35:57.774 -07 000000447 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:35:57.774 -07 000000447 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:35:57.784 -07 000000569 INF: FPGA: 'ZDACW 38489' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:35:57.784 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:35:57.914 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:35:57.924 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:35:57.924 -07 000000501 INF: FPGA: Recv ZDACR 38489
17-03-18 06:35:57.934 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 149 ms overall
17-03-18 06:35:57.934 -07 000000569 INF: Z Motor: MoveAbsStepped took 175 ms (did NOT wait for settling yet))
17-03-18 06:35:57.964 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:35:57.964 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:35:57.964 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:57.964 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:35:57.964 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:35:57.964 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:35:57.964 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:35:57.964 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:35:57.964 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:35:57.974 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:35:57.984 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:35:57.984 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 67 ms to get response, and 224 ms overall
17-03-18 06:35:58.294 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:35:58.294 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 521 ms overall
17-03-18 06:35:58.344 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:58.354 -07 000000626 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:35:58.354 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:35:58.354 -07 000000447 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:58.354 -07 000000447 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:35:58.354 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 521 ms, distance = 0.845 mm, average velocity = 1.622 mm/sec
17-03-18 06:35:59.304 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:35:59.304 -07 000000437 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:35:59.314 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:35:59.314 -07 000000447 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:35:59.324 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.990831,
17-03-18 06:35:59.354 -07 000000447 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:35:59.354 -07 000000447 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:35:59.354 -07 000000447 INF: Y Motor: Moved to 65.7129 after 1601 ms (table move)
17-03-18 06:35:59.354 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176191 mm (DAC = 38489)
17-03-18 06:35:59.354 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:00.314 -07 000000437 INF: FPGA: Recv ZSGSRD 36719
17-03-18 06:36:00.314 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 950 ms to get response, and 952 ms overall
17-03-18 06:36:00.324 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:00.324 -07 000000590 INF: FPGA: Recv ZSGSRD 36720
17-03-18 06:36:00.334 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:36:00.344 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:00.344 -07 000000606 INF: FPGA: Recv ZSGSRD 36723
17-03-18 06:36:00.354 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:36:00.364 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:00.364 -07 000000626 INF: FPGA: Recv ZSGSRD 36710
17-03-18 06:36:00.374 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:36:00.374 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:00.374 -07 000000626 INF: FPGA: Recv ZSGSRD 36717
17-03-18 06:36:00.384 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:00.384 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:00.384 -07 000000437 INF: FPGA: Recv ZSGSRD 36715
17-03-18 06:36:00.394 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:00.394 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:00.394 -07 000000437 INF: FPGA: Recv ZSGSRD 36714
17-03-18 06:36:00.404 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:00.404 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:00.404 -07 000000501 INF: FPGA: Recv ZSGSRD 36718
17-03-18 06:36:00.414 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:00.414 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:00.414 -07 000000606 INF: FPGA: Recv ZSGSRD 36716
17-03-18 06:36:00.424 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:00.424 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:00.424 -07 000000626 INF: FPGA: Recv ZSGSRD 36721
17-03-18 06:36:00.434 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:00.434 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:00.434 -07 000000437 INF: FPGA: Recv ZPIEZORD 32871
17-03-18 06:36:00.444 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:00.444 -07 000000608 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.873 V. Piezo Error = -8.5 V.
17-03-18 06:36:00.444 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36717 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36718 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36710 (-175.3 uncal um), Max = 36723 (-175.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:36:00.444 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36717, posNoise = 6, negNoise = 7
17-03-18 06:36:00.444 -07 000000608 INF: Z Motor: After move to -0.176191, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:00.444 -07 000000608 INF: Z Motor: Settle wait time = 1604 ms, measure time = 1082 ms (allowed 150 ms), total time = 2686 ms
17-03-18 06:36:00.444 -07 000000608 INF: Z Motor: Warning: Actual position measuring time = 1082 ms, longer than max expected time of 150 ms
17-03-18 06:36:00.444 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2690 ms
17-03-18 06:36:00.444 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:36:00.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:00.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:00.444 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:00.444 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:00.444 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:36:00.444 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:00.444 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:00.444 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:36:00.454 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:00.454 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:36:00.464 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 06:36:00.464 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:36:00.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:36:00.504 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:36:00.804 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:36:00.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:36:00.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:36:00.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:36:00.844 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:36:00.844 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 06:36:00.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:36:00.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:36:00.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:00.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:36:00.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:36:01.044 -07 000000590 INF: Autofocus start
17-03-18 06:36:01.044 -07 000000590 INF: MeasureProfile start
17-03-18 06:36:01.044 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:01.044 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:01.054 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:36:01.054 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:36:01.054 -07 000000590 INF: MeasureProfile done
17-03-18 06:36:01.054 -07 000000590 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:36:01.054 -07 000000590 INF: Autofocus finished
17-03-18 06:36:01.254 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:36:01.254 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:36:01.254 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.176201149220172. ----------
17-03-18 06:36:01.254 -07 000000610 INF: Cycle	151	Tile	8	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:36:01.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36986, sync = True, waitForSettling = True)
17-03-18 06:36:01.264 -07 000000610 INF: Z Motor: Moving to -0.169311 mm, started at -0.176201 mm, distance = 6.89 um
17-03-18 06:36:01.264 -07 000000610 INF: FPGA: Xmit ZDACW 36986\n [Z Motor]
17-03-18 06:36:01.264 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:36:01.274 -07 000000610 INF: FPGA: 'ZDACW 36986' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:01.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:01.274 -07 000000608 INF: FPGA: Recv ZDACR 36986
17-03-18 06:36:01.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:01.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:36:01.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:01.434 -07 000000608 INF: FPGA: Recv ZSGSRD 35642
17-03-18 06:36:01.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:01.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:01.444 -07 000000606 INF: FPGA: Recv ZSGSRD 35651
17-03-18 06:36:01.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:01.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:01.454 -07 000000501 INF: FPGA: Recv ZSGSRD 35640
17-03-18 06:36:01.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:01.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:01.464 -07 000000501 INF: FPGA: Recv ZSGSRD 35649
17-03-18 06:36:01.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:01.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:01.474 -07 000000608 INF: FPGA: Recv ZSGSRD 35640
17-03-18 06:36:01.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:01.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:01.484 -07 000000501 INF: FPGA: Recv ZSGSRD 35646
17-03-18 06:36:01.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:01.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:01.494 -07 000000626 INF: FPGA: Recv ZSGSRD 35653
17-03-18 06:36:01.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:01.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:01.504 -07 000000590 INF: FPGA: Recv ZSGSRD 35642
17-03-18 06:36:01.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:01.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:01.514 -07 000000608 INF: FPGA: Recv ZSGSRD 35645
17-03-18 06:36:01.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:01.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:01.524 -07 000000606 INF: FPGA: Recv ZSGSRD 35645
17-03-18 06:36:01.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:01.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:01.534 -07 000000626 INF: FPGA: Recv ZPIEZORD 31438
17-03-18 06:36:01.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:01.544 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -9.3 V.
17-03-18 06:36:01.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35645 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35645 (-168.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35640 (-168.4 uncal um), Max = 35653 (-168.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:36:01.544 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35645, posNoise = 8, negNoise = 5
17-03-18 06:36:01.544 -07 000000610 INF: Z Motor: After move to -0.169311, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:01.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:36:01.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:01.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:01.544 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:01.544 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:01.544 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:36:01.544 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:01.544 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:36:01.544 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:36:01.544 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:01.544 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:36:01.544 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:36:01.544 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:36:01.554 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:01.554 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:36:01.554 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:36:01.554 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:36:01.564 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:36:01.564 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:36:01.564 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:36:01.564 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:36:01.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37163 150\n [Camera]
17-03-18 06:36:01.764 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:36:01.874 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:36:01.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:36:02.234 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:36:02.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:36:02.234 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:02.234 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:36:02.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:36:02.234 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:02.234 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:02.234 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:36:02.234 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:02.234 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:36:02.424 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37163 848
17-03-18 06:36:02.574 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:36:02.624 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:36:02.634 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:36:02.634 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:02.634 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:36:02.634 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:36:02.634 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:02.634 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:02.634 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:02.634 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:36:02.644 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:36:02.794 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:36:02.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:36:02.794 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:02.804 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:02.804 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:36:02.804 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:36:02.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:36:02.804 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:02.804 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:02.804 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:36:02.984 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-18 06:36:02.994 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:36:02.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37163 150' command took 2 ms to send, 1410 ms to get response, and 1421 ms overall
17-03-18 06:36:02.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:36:02.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.169314393804204. ------
17-03-18 06:36:02.994 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:02.994 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17577 mm
17-03-18 06:36:02.994 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:36:03.114 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:03.114 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-18 06:36:03.114 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:36:03.114 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 06:36:03.114 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:03.114 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38397, sync = True, waitForSettling = False)
17-03-18 06:36:03.114 -07 000000461 INF: Z Motor: Moving to -0.175770 mm, started at -0.169314 mm, distance = -6.46 um
17-03-18 06:36:03.114 -07 000000437 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:36:03.124 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:36:03.124 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:36:03.124 -07 000000438 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:03.124 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:36:03.124 -07 000000438 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:36:03.134 -07 000000461 INF: FPGA: Xmit ZDACW 38397\n [Z Motor]
17-03-18 06:36:03.134 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:36:03.144 -07 000000461 INF: FPGA: 'ZDACW 38397' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:36:03.144 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:36:03.154 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:03.154 -07 000000590 INF: FPGA: Recv ZDACR 38397
17-03-18 06:36:03.164 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:36:03.164 -07 000000461 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 06:36:03.194 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:36:03.194 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:36:03.194 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:03.194 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:36:03.194 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:36:03.194 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:03.204 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:03.204 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:03.204 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:36:03.214 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:36:03.324 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:36:03.324 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-18 06:36:03.514 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:36:03.514 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:36:03.584 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:03.584 -07 000000501 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:36:03.594 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:03.594 -07 000000438 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:03.594 -07 000000438 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:36:03.594 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 06:36:04.544 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:04.544 -07 000000437 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:36:04.554 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:04.554 -07 000000438 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:04.584 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:36:04.584 -07 000000438 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:36:04.584 -07 000000438 INF: Y Motor: Moved to 66.5381 after 1471 ms (table move)
17-03-18 06:36:04.584 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175770 mm (DAC = 38397)
17-03-18 06:36:04.584 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:04.594 -07 000000455 INF: FPGA: Recv ZSGSRD 36650
17-03-18 06:36:04.594 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:36:04.594 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:04.594 -07 000000437 INF: FPGA: Recv ZSGSRD 36654
17-03-18 06:36:04.604 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:04.604 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:04.604 -07 000000569 INF: FPGA: Recv ZSGSRD 36648
17-03-18 06:36:04.614 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:04.614 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:04.614 -07 000000591 INF: FPGA: Recv ZSGSRD 36643
17-03-18 06:36:04.624 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:04.624 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:04.624 -07 000000437 INF: FPGA: Recv ZSGSRD 36648
17-03-18 06:36:04.634 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:04.634 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:04.634 -07 000000501 INF: FPGA: Recv ZSGSRD 36660
17-03-18 06:36:04.644 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:04.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:04.644 -07 000000382 INF: FPGA: Recv ZSGSRD 36654
17-03-18 06:36:04.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:04.654 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:04.654 -07 000000461 INF: FPGA: Recv ZSGSRD 36654
17-03-18 06:36:04.664 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:04.664 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:04.664 -07 000000501 INF: FPGA: Recv ZSGSRD 36654
17-03-18 06:36:04.674 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:04.674 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:04.674 -07 000000382 INF: FPGA: Recv ZSGSRD 36647
17-03-18 06:36:04.684 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:04.684 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:04.684 -07 000000437 INF: FPGA: Recv ZPIEZORD 32807
17-03-18 06:36:04.694 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:04.694 -07 000000606 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.5 V.
17-03-18 06:36:04.694 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36651 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36652 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36643 (-174.8 uncal um), Max = 36660 (-174.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:36:04.694 -07 000000606 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36651, posNoise = 9, negNoise = 8
17-03-18 06:36:04.694 -07 000000606 INF: Z Motor: After move to -0.175770, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:04.694 -07 000000606 INF: Z Motor: Settle wait time = 1473 ms, measure time = 104 ms (allowed 150 ms), total time = 1577 ms
17-03-18 06:36:04.694 -07 000000606 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:36:04.744 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1744 ms
17-03-18 06:36:04.744 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:36:04.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:04.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:04.744 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:04.744 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:36:04.744 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:04.744 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:04.744 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:04.744 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:36:04.754 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:36:04.754 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:36:04.764 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:36:04.764 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:36:04.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:36:04.814 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 06:36:05.114 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 06:36:05.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 06:36:05.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:36:05.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:36:05.154 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:36:05.154 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 06:36:05.154 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:36:05.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 06:36:05.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:05.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:36:05.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 06:36:05.254 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:05.934 -07 000000561 INF: Autofocus start
17-03-18 06:36:05.934 -07 000000561 INF: MeasureProfile start
17-03-18 06:36:05.944 -07 000000561 INF: MeasureProfile done
17-03-18 06:36:05.944 -07 000000561 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:36:05.944 -07 000000561 INF: Autofocus finished
17-03-18 06:36:05.944 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:05.944 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 686 ms to get response, and 693 ms overall
17-03-18 06:36:05.944 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:36:06.154 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:36:06.154 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-18 06:36:06.154 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175777151218816. ----------
17-03-18 06:36:06.154 -07 000000610 INF: Cycle	151	Tile	9	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:36:06.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36894, sync = True, waitForSettling = True)
17-03-18 06:36:06.154 -07 000000610 INF: Z Motor: Moving to -0.168890 mm, started at -0.175777 mm, distance = 6.89 um
17-03-18 06:36:06.154 -07 000000610 INF: FPGA: Xmit ZDACW 36894\n [Z Motor]
17-03-18 06:36:06.164 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:36:06.164 -07 000000610 INF: FPGA: 'ZDACW 36894' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:36:06.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:06.164 -07 000000591 INF: FPGA: Recv ZDACR 36894
17-03-18 06:36:06.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:06.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:36:06.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:06.324 -07 000000561 INF: FPGA: Recv ZSGSRD 35578
17-03-18 06:36:06.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:06.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:06.334 -07 000000561 INF: FPGA: Recv ZSGSRD 35579
17-03-18 06:36:06.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:06.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:06.344 -07 000000561 INF: FPGA: Recv ZSGSRD 35584
17-03-18 06:36:06.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:06.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:06.354 -07 000000591 INF: FPGA: Recv ZSGSRD 35575
17-03-18 06:36:06.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:06.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:06.364 -07 000000561 INF: FPGA: Recv ZSGSRD 35576
17-03-18 06:36:06.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:06.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:06.374 -07 000000447 INF: FPGA: Recv ZSGSRD 35581
17-03-18 06:36:06.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:06.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:06.384 -07 000000561 INF: FPGA: Recv ZSGSRD 35582
17-03-18 06:36:06.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:06.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:06.394 -07 000000447 INF: FPGA: Recv ZSGSRD 35577
17-03-18 06:36:06.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:06.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:06.404 -07 000000561 INF: FPGA: Recv ZSGSRD 35577
17-03-18 06:36:06.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:06.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:06.414 -07 000000608 INF: FPGA: Recv ZSGSRD 35582
17-03-18 06:36:06.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:06.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:06.424 -07 000000561 INF: FPGA: Recv ZPIEZORD 31343
17-03-18 06:36:06.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:06.434 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.3 V.
17-03-18 06:36:06.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35579 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35578 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35575 (-168.0 uncal um), Max = 35584 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:36:06.434 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35579, posNoise = 5, negNoise = 4
17-03-18 06:36:06.434 -07 000000610 INF: Z Motor: After move to -0.168890, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:06.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 06:36:06.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:06.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:06.434 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:06.434 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:36:06.434 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:06.434 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:36:06.434 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:36:06.434 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:06.434 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:06.434 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:36:06.434 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:36:06.434 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:36:06.434 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:06.434 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:36:06.444 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 06:36:06.444 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:36:06.454 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:36:06.454 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:36:06.454 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:36:06.454 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:36:06.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37071 150\n [Camera]
17-03-18 06:36:06.564 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.974486,
17-03-18 06:36:06.654 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:36:06.874 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:36:06.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:36:07.114 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:36:07.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:36:07.124 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:07.124 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:36:07.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:36:07.124 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:07.124 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:07.124 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:36:07.134 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:07.134 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:36:07.314 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37071 848
17-03-18 06:36:07.464 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:36:07.514 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:36:07.514 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:36:07.514 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:07.514 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:36:07.514 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:36:07.514 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:07.514 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:07.514 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:07.514 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:36:07.524 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:36:07.684 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:36:07.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:36:07.684 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:07.694 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:36:07.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:36:07.694 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:07.694 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:07.694 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:36:07.694 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:07.694 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:36:07.874 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-18 06:36:07.874 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:36:07.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37071 150' command took 2 ms to send, 1417 ms to get response, and 1421 ms overall
17-03-18 06:36:07.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:36:07.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.168890395802848. ------
17-03-18 06:36:07.884 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:07.884 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17554 mm
17-03-18 06:36:07.884 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:36:07.884 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:36:07.884 -07 000000437 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 06:36:07.884 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38347, sync = True, waitForSettling = False)
17-03-18 06:36:07.884 -07 000000626 INF: Z Motor: Moving to -0.175541 mm, started at -0.168890 mm, distance = -6.65 um
17-03-18 06:36:07.884 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:07.894 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:36:07.894 -07 000000626 INF: FPGA: Xmit ZDACW 38347\n [Z Motor]
17-03-18 06:36:07.894 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:36:07.904 -07 000000626 INF: FPGA: 'ZDACW 38347' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:36:07.904 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:07.904 -07 000000447 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:36:07.914 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:36:07.914 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:36:07.914 -07 000000437 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:07.914 -07 000000437 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:36:07.914 -07 000000437 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:36:07.924 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:07.924 -07 000000447 INF: FPGA: Recv ZDACR 38347
17-03-18 06:36:07.934 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:36:07.934 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:36:07.934 -07 000000626 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 06:36:08.094 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:36:08.094 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:36:08.094 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:08.094 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:08.094 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:36:08.094 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:36:08.094 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:08.094 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:08.094 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:36:08.104 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:36:09.124 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:36:09.124 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:36:09.124 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1200 ms to get response, and 1230 ms overall
17-03-18 06:36:09.124 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1180 ms to get response, and 1209 ms overall
17-03-18 06:36:09.174 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:09.174 -07 000000455 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:36:09.184 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:36:09.184 -07 000000437 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:09.184 -07 000000437 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 06:36:09.184 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1210 ms, distance = 0.845 mm, average velocity = 0.698 mm/sec
17-03-18 06:36:10.134 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:10.134 -07 000000591 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:36:10.144 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:10.144 -07 000000437 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:10.174 -07 000000437 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:36:10.174 -07 000000437 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:36:10.174 -07 000000437 INF: Y Motor: Moved to 67.3711 after 2287 ms (table move)
17-03-18 06:36:10.174 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175541 mm (DAC = 38347)
17-03-18 06:36:10.174 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:10.184 -07 000000591 INF: FPGA: Recv ZSGSRD 36618
17-03-18 06:36:10.184 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:36:10.184 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:10.184 -07 000000437 INF: FPGA: Recv ZSGSRD 36623
17-03-18 06:36:10.194 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:10.194 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:10.194 -07 000000437 INF: FPGA: Recv ZSGSRD 36616
17-03-18 06:36:10.204 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:10.204 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:10.204 -07 000000591 INF: FPGA: Recv ZSGSRD 36611
17-03-18 06:36:10.214 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:10.214 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:10.214 -07 000000591 INF: FPGA: Recv ZSGSRD 36617
17-03-18 06:36:10.224 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:10.224 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:10.224 -07 000000437 INF: FPGA: Recv ZSGSRD 36618
17-03-18 06:36:10.234 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:10.234 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:10.234 -07 000000437 INF: FPGA: Recv ZSGSRD 36613
17-03-18 06:36:10.244 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:10.244 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:10.244 -07 000000591 INF: FPGA: Recv ZSGSRD 36615
17-03-18 06:36:10.254 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:10.254 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:10.254 -07 000000437 INF: FPGA: Recv ZSGSRD 36616
17-03-18 06:36:10.264 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:10.264 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:10.264 -07 000000437 INF: FPGA: Recv ZSGSRD 36614
17-03-18 06:36:10.274 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:10.274 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:10.274 -07 000000591 INF: FPGA: Recv ZPIEZORD 32773
17-03-18 06:36:10.284 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:10.284 -07 000000606 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.851 V. Piezo Error = -8.5 V.
17-03-18 06:36:10.284 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36616 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36616 (-174.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36611 (-174.6 uncal um), Max = 36623 (-174.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:36:10.284 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36616, posNoise = 7, negNoise = 5
17-03-18 06:36:10.284 -07 000000606 INF: Z Motor: After move to -0.175541, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:10.284 -07 000000606 INF: Z Motor: Settle wait time = 2292 ms, measure time = 102 ms (allowed 150 ms), total time = 2394 ms
17-03-18 06:36:10.284 -07 000000606 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:36:10.334 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2446 ms
17-03-18 06:36:10.334 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:36:10.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:10.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:10.334 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:10.334 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:10.344 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:36:10.344 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:10.344 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:10.344 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:36:10.344 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:10.344 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:36:10.354 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:36:10.354 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:36:10.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:36:10.394 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:36:10.694 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:36:10.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:36:10.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:36:10.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614208944, 0x0, 559484976) start.
17-03-18 06:36:10.734 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:36:10.734 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 06:36:10.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:36:10.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614208944, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 06:36:10.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:10.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:36:10.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 06:36:10.934 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:10.934 -07 000000606 INF: Autofocus start
17-03-18 06:36:10.934 -07 000000606 INF: MeasureProfile start
17-03-18 06:36:10.934 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:10.944 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:36:10.944 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:36:10.944 -07 000000606 INF: MeasureProfile done
17-03-18 06:36:10.944 -07 000000606 INF: X=64  Z correction [um]=0.2557664
17-03-18 06:36:10.944 -07 000000606 INF: Autofocus finished
17-03-18 06:36:11.144 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:36:11.144 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:36:11.144 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175552303793854. ----------
17-03-18 06:36:11.144 -07 000000610 INF: Cycle	151	Tile	10	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:36:11.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36915, sync = True, waitForSettling = True)
17-03-18 06:36:11.154 -07 000000610 INF: Z Motor: Moving to -0.168986 mm, started at -0.175552 mm, distance = 6.57 um
17-03-18 06:36:11.154 -07 000000610 INF: FPGA: Xmit ZDACW 36915\n [Z Motor]
17-03-18 06:36:11.154 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:36:11.164 -07 000000610 INF: FPGA: 'ZDACW 36915' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:11.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:11.164 -07 000000437 INF: FPGA: Recv ZDACR 36915
17-03-18 06:36:11.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:11.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:36:11.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:11.324 -07 000000606 INF: FPGA: Recv ZSGSRD 35591
17-03-18 06:36:11.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:11.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:11.334 -07 000000461 INF: FPGA: Recv ZSGSRD 35598
17-03-18 06:36:11.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:11.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:11.344 -07 000000438 INF: FPGA: Recv ZSGSRD 35595
17-03-18 06:36:11.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:11.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:11.354 -07 000000461 INF: FPGA: Recv ZSGSRD 35604
17-03-18 06:36:11.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:11.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:11.364 -07 000000382 INF: FPGA: Recv ZSGSRD 35593
17-03-18 06:36:11.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:11.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:11.374 -07 000000461 INF: FPGA: Recv ZSGSRD 35593
17-03-18 06:36:11.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:11.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:11.384 -07 000000438 INF: FPGA: Recv ZSGSRD 35597
17-03-18 06:36:11.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:11.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:11.394 -07 000000461 INF: FPGA: Recv ZSGSRD 35594
17-03-18 06:36:11.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:11.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:11.404 -07 000000382 INF: FPGA: Recv ZSGSRD 35596
17-03-18 06:36:11.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:11.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:11.414 -07 000000461 INF: FPGA: Recv ZSGSRD 35590
17-03-18 06:36:11.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:11.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:11.424 -07 000000606 INF: FPGA: Recv ZPIEZORD 31366
17-03-18 06:36:11.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:11.434 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.3 V.
17-03-18 06:36:11.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35595 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35594 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35590 (-168.1 uncal um), Max = 35604 (-168.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:36:11.434 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35595, posNoise = 9, negNoise = 5
17-03-18 06:36:11.434 -07 000000610 INF: Z Motor: After move to -0.168986, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:11.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:36:11.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:11.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:11.434 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:11.434 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:11.434 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:36:11.434 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:36:11.434 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:36:11.434 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:11.434 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:36:11.434 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:36:11.434 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:11.434 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:36:11.444 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:36:11.444 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:36:11.444 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:36:11.444 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:36:11.454 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:36:11.454 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:36:11.454 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:36:11.454 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:36:11.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37092 150\n [Camera]
17-03-18 06:36:11.664 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:36:11.874 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:36:11.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:36:11.934 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.978563,
17-03-18 06:36:12.124 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:36:12.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:36:12.124 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:12.124 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:12.124 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:36:12.124 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:36:12.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:36:12.124 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:12.124 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:12.124 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:36:12.524 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:36:12.524 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:36:12.524 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:12.524 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:12.524 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:36:12.524 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:36:12.524 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:36:12.524 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:12.534 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:12.534 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37092 849
17-03-18 06:36:12.534 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:36:12.534 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:36:12.694 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1223
17-03-18 06:36:12.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1223
17-03-18 06:36:12.694 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:12.694 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:12.694 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:36:12.694 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1223
17-03-18 06:36:12.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1223
17-03-18 06:36:12.694 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:12.694 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:12.694 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:36:13.104 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 06:36:13.104 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:36:13.104 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:13.104 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 06:36:13.104 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:36:13.104 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:13.104 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:13.104 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:36:13.104 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 06:36:13.114 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:36:13.114 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:36:13.114 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:36:13.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37092 150' command took 2 ms to send, 1648 ms to get response, and 1657 ms overall
17-03-18 06:36:13.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:36:13.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.168993183197116. ------
17-03-18 06:36:13.254 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:13.254 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17519 mm
17-03-18 06:36:13.254 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:36:13.814 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:36:13.814 -07 000000447 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 06:36:13.814 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:14.314 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:14.314 -07 000000626 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:36:14.314 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1050 ms to get response, and 1060 ms overall
17-03-18 06:36:14.314 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 490 ms to get response, and 499 ms overall
17-03-18 06:36:14.314 -07 000000447 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:14.314 -07 000000447 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:36:14.314 -07 000000447 INF: Y Motor: Moving 1346 steps-25
17-03-18 06:36:14.314 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:36:14.314 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38271, sync = True, waitForSettling = False)
17-03-18 06:36:14.314 -07 000000626 INF: Z Motor: Moving to -0.175193 mm, started at -0.168993 mm, distance = -6.20 um
17-03-18 06:36:14.324 -07 000000626 INF: FPGA: Xmit ZDACW 38271\n [Z Motor]
17-03-18 06:36:14.334 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:36:15.314 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:36:15.314 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:36:15.314 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 06:36:15.314 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 970 ms to get response, and 998 ms overall
17-03-18 06:36:15.314 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 06:36:15.314 -07 000000626 INF: FPGA: 'ZDACW 38271' command took 2 ms to send, 980 ms to get response, and 996 ms overall
17-03-18 06:36:15.314 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:15.314 -07 000000591 INF: FPGA: Recv ZDACR 38271
17-03-18 06:36:15.324 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:15.324 -07 000000626 INF: Z Motor: MoveAbsStepped took 1006 ms (did NOT wait for settling yet))
17-03-18 06:36:15.374 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:15.374 -07 000000608 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:36:15.384 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:15.384 -07 000000447 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:15.384 -07 000000447 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:36:15.384 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 999 ms, distance = 0.842 mm, average velocity = 0.842 mm/sec
17-03-18 06:36:16.334 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:16.334 -07 000000608 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:36:16.344 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:16.344 -07 000000447 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:16.374 -07 000000447 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:36:16.374 -07 000000447 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:36:16.374 -07 000000447 INF: Y Motor: Moved to 68.2041 after 2561 ms (table move)
17-03-18 06:36:16.374 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175193 mm (DAC = 38271)
17-03-18 06:36:16.374 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:16.374 -07 000000447 INF: FPGA: Recv ZSGSRD 36565
17-03-18 06:36:16.384 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:36:16.384 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:16.384 -07 000000447 INF: FPGA: Recv ZSGSRD 36562
17-03-18 06:36:16.394 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:16.394 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:16.394 -07 000000447 INF: FPGA: Recv ZSGSRD 36559
17-03-18 06:36:16.404 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:16.404 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:16.404 -07 000000447 INF: FPGA: Recv ZSGSRD 36562
17-03-18 06:36:16.414 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:16.414 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:16.414 -07 000000447 INF: FPGA: Recv ZSGSRD 36561
17-03-18 06:36:16.424 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:16.424 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:16.424 -07 000000447 INF: FPGA: Recv ZSGSRD 36559
17-03-18 06:36:16.434 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:16.434 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:16.434 -07 000000447 INF: FPGA: Recv ZSGSRD 36564
17-03-18 06:36:16.444 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:16.444 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:16.444 -07 000000608 INF: FPGA: Recv ZSGSRD 36563
17-03-18 06:36:16.454 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:16.454 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:16.454 -07 000000447 INF: FPGA: Recv ZSGSRD 36559
17-03-18 06:36:16.464 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:16.464 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:16.464 -07 000000608 INF: FPGA: Recv ZSGSRD 36559
17-03-18 06:36:16.474 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:16.474 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:16.474 -07 000000447 INF: FPGA: Recv ZPIEZORD 32691
17-03-18 06:36:16.484 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:16.484 -07 000000382 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.840 V. Piezo Error = -8.6 V.
17-03-18 06:36:16.484 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36561 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36562 (-174.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36559 (-174.3 uncal um), Max = 36565 (-174.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:36:16.484 -07 000000382 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36561, posNoise = 4, negNoise = 2
17-03-18 06:36:16.484 -07 000000382 INF: Z Motor: After move to -0.175193, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:16.484 -07 000000382 INF: Z Motor: Settle wait time = 2062 ms, measure time = 105 ms (allowed 150 ms), total time = 2167 ms
17-03-18 06:36:16.484 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:36:16.534 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3279 ms
17-03-18 06:36:16.534 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:36:16.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:16.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:16.534 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:16.534 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:16.534 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:36:16.534 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:16.534 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:16.534 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:36:16.544 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:16.544 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:36:16.554 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:36:16.554 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:36:16.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:36:16.604 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:36:16.874 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:36:16.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:36:16.904 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:36:16.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:36:16.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:36:16.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:36:16.934 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:36:16.944 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 06:36:16.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:36:17.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 06:36:17.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:17.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:36:17.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 06:36:17.044 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:17.044 -07 000000438 INF: Autofocus start
17-03-18 06:36:17.044 -07 000000438 INF: MeasureProfile start
17-03-18 06:36:17.044 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:17.054 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:36:17.054 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:36:17.054 -07 000000438 INF: MeasureProfile done
17-03-18 06:36:17.054 -07 000000438 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:36:17.054 -07 000000438 INF: Autofocus finished
17-03-18 06:36:17.254 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:36:17.254 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:36:17.254 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.175198972126057. ----------
17-03-18 06:36:17.264 -07 000000610 INF: Cycle	151	Tile	11	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:36:17.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36768, sync = True, waitForSettling = True)
17-03-18 06:36:17.264 -07 000000610 INF: Z Motor: Moving to -0.168313 mm, started at -0.175199 mm, distance = 6.89 um
17-03-18 06:36:17.264 -07 000000610 INF: FPGA: Xmit ZDACW 36768\n [Z Motor]
17-03-18 06:36:17.264 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:36:17.274 -07 000000610 INF: FPGA: 'ZDACW 36768' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:36:17.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:17.274 -07 000000626 INF: FPGA: Recv ZDACR 36768
17-03-18 06:36:17.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:17.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:36:17.314 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.986717,
17-03-18 06:36:17.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:17.434 -07 000000455 INF: FPGA: Recv ZSGSRD 35485
17-03-18 06:36:17.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:17.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:17.444 -07 000000382 INF: FPGA: Recv ZSGSRD 35492
17-03-18 06:36:17.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:17.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:17.454 -07 000000455 INF: FPGA: Recv ZSGSRD 35493
17-03-18 06:36:17.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:17.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:17.464 -07 000000438 INF: FPGA: Recv ZSGSRD 35488
17-03-18 06:36:17.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:17.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:17.474 -07 000000590 INF: FPGA: Recv ZSGSRD 35495
17-03-18 06:36:17.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:17.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:17.484 -07 000000382 INF: FPGA: Recv ZSGSRD 35489
17-03-18 06:36:17.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:17.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:17.494 -07 000000626 INF: FPGA: Recv ZSGSRD 35488
17-03-18 06:36:17.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:17.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:17.504 -07 000000382 INF: FPGA: Recv ZSGSRD 35487
17-03-18 06:36:17.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:17.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:17.514 -07 000000608 INF: FPGA: Recv ZSGSRD 35491
17-03-18 06:36:17.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:17.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:17.524 -07 000000561 INF: FPGA: Recv ZSGSRD 35490
17-03-18 06:36:17.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:17.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:17.534 -07 000000626 INF: FPGA: Recv ZPIEZORD 31237
17-03-18 06:36:17.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:17.544 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -9.4 V.
17-03-18 06:36:17.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35490 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35490 (-167.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35485 (-167.4 uncal um), Max = 35495 (-167.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:36:17.544 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35490, posNoise = 5, negNoise = 5
17-03-18 06:36:17.544 -07 000000610 INF: Z Motor: After move to -0.168313, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:17.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:36:17.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:17.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:17.544 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:17.544 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:17.544 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:36:17.544 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:17.544 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:36:17.544 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:36:17.544 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:17.544 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:36:17.544 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:36:17.544 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:36:17.554 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:36:17.554 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:36:17.554 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:36:17.554 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:36:17.564 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:36:17.564 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:36:17.564 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:36:17.564 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:36:17.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36944 150\n [Camera]
17-03-18 06:36:17.774 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:36:18.234 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:36:18.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:36:18.234 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:18.234 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:36:18.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:36:18.234 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:18.234 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:18.234 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:36:18.234 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:18.234 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:36:18.424 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36944 848
17-03-18 06:36:18.574 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:36:18.634 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:36:18.634 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:36:18.634 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:18.634 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:36:18.634 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:36:18.634 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:18.634 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:18.634 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:36:18.644 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:18.644 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:36:18.794 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:36:18.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:36:18.804 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:18.804 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:36:18.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:36:18.804 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:18.804 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:36:18.804 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:18.804 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:18.804 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:36:18.994 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:36:18.994 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:36:18.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36944 150' command took 2 ms to send, 1412 ms to get response, and 1422 ms overall
17-03-18 06:36:18.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:36:18.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.168318640922231. ------
17-03-18 06:36:19.114 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17496 mm
17-03-18 06:36:19.114 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:36:19.114 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:19.184 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 06:36:19.184 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:36:19.184 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:19.194 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 06:36:19.194 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:36:19.194 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:19.194 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:19.194 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:36:19.194 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:19.204 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:36:19.204 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:36:19.204 -07 000000447 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 06:36:19.204 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:19.214 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:19.214 -07 000000608 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:36:19.214 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 94 ms to get response, and 95 ms overall
17-03-18 06:36:19.214 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 8 ms overall
17-03-18 06:36:19.214 -07 000000447 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:19.214 -07 000000447 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:36:19.214 -07 000000447 INF: Y Motor: Moving 1342 steps-17
17-03-18 06:36:19.214 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38219, sync = True, waitForSettling = False)
17-03-18 06:36:19.214 -07 000000608 INF: Z Motor: Moving to -0.174955 mm, started at -0.168319 mm, distance = -6.64 um
17-03-18 06:36:19.214 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:36:19.224 -07 000000608 INF: FPGA: Xmit ZDACW 38219\n [Z Motor]
17-03-18 06:36:19.234 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:36:20.034 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:36:20.034 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:36:20.034 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 06:36:20.034 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 790 ms to get response, and 814 ms overall
17-03-18 06:36:20.034 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 810 ms to get response, and 815 ms overall
17-03-18 06:36:20.034 -07 000000608 INF: FPGA: 'ZDACW 38219' command took 0 ms to send, 800 ms to get response, and 814 ms overall
17-03-18 06:36:20.034 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:20.034 -07 000000590 INF: FPGA: Recv ZDACR 38219
17-03-18 06:36:20.044 -07 000000608 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:20.044 -07 000000608 INF: Z Motor: MoveAbsStepped took 824 ms (did NOT wait for settling yet))
17-03-18 06:36:20.084 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:20.094 -07 000000569 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:36:20.094 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:36:20.094 -07 000000447 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:20.094 -07 000000447 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 06:36:20.094 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 815 ms, distance = 0.839 mm, average velocity = 1.029 mm/sec
17-03-18 06:36:21.044 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:21.044 -07 000000590 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:36:21.054 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:21.054 -07 000000447 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:21.084 -07 000000447 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:36:21.084 -07 000000447 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:36:21.084 -07 000000447 INF: Y Motor: Moved to 69.0259 after 1875 ms (table move)
17-03-18 06:36:21.084 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174955 mm (DAC = 38219)
17-03-18 06:36:21.084 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:21.094 -07 000000590 INF: FPGA: Recv ZSGSRD 36522
17-03-18 06:36:21.094 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 06:36:21.094 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:21.094 -07 000000569 INF: FPGA: Recv ZSGSRD 36523
17-03-18 06:36:21.104 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:36:21.104 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:21.104 -07 000000590 INF: FPGA: Recv ZSGSRD 36524
17-03-18 06:36:21.114 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:21.114 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:21.114 -07 000000447 INF: FPGA: Recv ZSGSRD 36526
17-03-18 06:36:21.124 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:21.124 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:21.124 -07 000000501 INF: FPGA: Recv ZSGSRD 36529
17-03-18 06:36:21.134 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:21.134 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:21.134 -07 000000608 INF: FPGA: Recv ZSGSRD 36518
17-03-18 06:36:21.144 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:21.144 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:21.144 -07 000000590 INF: FPGA: Recv ZSGSRD 36528
17-03-18 06:36:21.154 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:21.154 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:21.154 -07 000000569 INF: FPGA: Recv ZSGSRD 36525
17-03-18 06:36:21.164 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:21.164 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:21.164 -07 000000608 INF: FPGA: Recv ZSGSRD 36520
17-03-18 06:36:21.174 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:21.174 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:21.174 -07 000000608 INF: FPGA: Recv ZSGSRD 36523
17-03-18 06:36:21.184 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:21.184 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:21.184 -07 000000606 INF: FPGA: Recv ZPIEZORD 32596
17-03-18 06:36:21.194 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:21.194 -07 000000438 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -8.7 V.
17-03-18 06:36:21.194 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36524 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36524 (-174.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36518 (-174.0 uncal um), Max = 36529 (-174.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:36:21.194 -07 000000438 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36524, posNoise = 5, negNoise = 6
17-03-18 06:36:21.194 -07 000000438 INF: Z Motor: After move to -0.174955, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:21.194 -07 000000438 INF: Z Motor: Settle wait time = 1869 ms, measure time = 105 ms (allowed 150 ms), total time = 1974 ms
17-03-18 06:36:21.194 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:36:21.244 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2121 ms
17-03-18 06:36:21.244 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:36:21.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:21.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:21.244 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:21.244 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:21.244 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:36:21.244 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:21.244 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:36:21.244 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:36:21.254 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:36:21.254 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:36:21.264 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:36:21.264 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:36:21.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:36:21.304 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:36:21.604 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:36:21.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:36:21.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:36:21.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:36:21.644 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:36:21.644 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 06:36:21.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:36:21.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:36:21.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:21.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:36:21.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:36:21.844 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:21.844 -07 000000437 INF: Autofocus start
17-03-18 06:36:21.844 -07 000000437 INF: MeasureProfile start
17-03-18 06:36:21.844 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:21.854 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:36:21.854 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:36:21.854 -07 000000437 INF: MeasureProfile done
17-03-18 06:36:21.854 -07 000000437 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:36:21.854 -07 000000437 INF: Autofocus finished
17-03-18 06:36:21.874 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:36:21.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:36:22.054 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:36:22.054 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:36:22.054 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.174961276276812. ----------
17-03-18 06:36:22.054 -07 000000610 INF: Cycle	151	Tile	12	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:36:22.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36734, sync = True, waitForSettling = True)
17-03-18 06:36:22.064 -07 000000610 INF: Z Motor: Moving to -0.168157 mm, started at -0.174961 mm, distance = 6.80 um
17-03-18 06:36:22.064 -07 000000610 INF: FPGA: Xmit ZDACW 36734\n [Z Motor]
17-03-18 06:36:22.064 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:36:22.074 -07 000000610 INF: FPGA: 'ZDACW 36734' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:22.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:22.074 -07 000000447 INF: FPGA: Recv ZDACR 36734
17-03-18 06:36:22.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:22.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:36:22.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:22.234 -07 000000455 INF: FPGA: Recv ZSGSRD 35464
17-03-18 06:36:22.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:22.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:22.244 -07 000000447 INF: FPGA: Recv ZSGSRD 35464
17-03-18 06:36:22.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:22.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:22.254 -07 000000569 INF: FPGA: Recv ZSGSRD 35473
17-03-18 06:36:22.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:22.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:22.264 -07 000000447 INF: FPGA: Recv ZSGSRD 35465
17-03-18 06:36:22.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:22.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:22.274 -07 000000438 INF: FPGA: Recv ZSGSRD 35464
17-03-18 06:36:22.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:22.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:22.284 -07 000000569 INF: FPGA: Recv ZSGSRD 35466
17-03-18 06:36:22.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:22.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:22.294 -07 000000606 INF: FPGA: Recv ZSGSRD 35471
17-03-18 06:36:22.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:22.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:22.304 -07 000000569 INF: FPGA: Recv ZSGSRD 35464
17-03-18 06:36:22.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:22.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:22.314 -07 000000438 INF: FPGA: Recv ZSGSRD 35467
17-03-18 06:36:22.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:22.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:22.324 -07 000000447 INF: FPGA: Recv ZSGSRD 35469
17-03-18 06:36:22.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:22.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:22.334 -07 000000438 INF: FPGA: Recv ZPIEZORD 31162
17-03-18 06:36:22.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:22.344 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.605 V. Piezo Error = -9.5 V.
17-03-18 06:36:22.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35467 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35466 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35464 (-167.3 uncal um), Max = 35473 (-167.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:36:22.344 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35467, posNoise = 6, negNoise = 3
17-03-18 06:36:22.344 -07 000000610 INF: Z Motor: After move to -0.168157, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:22.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:36:22.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:22.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:22.344 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:22.344 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:22.344 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:36:22.344 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:22.344 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:36:22.344 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:36:22.344 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:22.344 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:36:22.344 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:36:22.344 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:36:22.354 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:36:22.354 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:36:22.354 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:36:22.354 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:36:22.364 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:36:22.364 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:36:22.364 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:36:22.364 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:36:22.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36911 150\n [Camera]
17-03-18 06:36:22.574 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:36:22.674 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.030322,
17-03-18 06:36:23.044 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:36:23.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:36:23.044 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:23.044 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:36:23.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:36:23.044 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:23.044 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:23.044 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:36:23.044 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:23.044 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:36:23.234 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36911 848
17-03-18 06:36:23.384 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:36:23.444 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:36:23.444 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:36:23.444 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:23.444 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:23.454 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:36:23.454 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:36:23.454 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:36:23.454 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:23.454 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:23.464 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:36:23.604 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:36:23.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:36:23.614 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:23.614 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:36:23.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:36:23.614 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:23.614 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:23.614 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:23.614 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:36:23.614 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:36:23.804 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:36:23.804 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:36:23.804 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36911 150' command took 2 ms to send, 1411 ms to get response, and 1436 ms overall
17-03-18 06:36:23.804 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:36:23.804 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.168170884042971. ------
17-03-18 06:36:23.804 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:23.804 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17461 mm
17-03-18 06:36:23.804 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:36:23.804 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:36:23.804 -07 000000455 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 06:36:23.814 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:24.024 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 407 ms.
17-03-18 06:36:24.024 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:36:24.024 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:24.024 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 408 ms.
17-03-18 06:36:24.024 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:36:24.024 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:24.024 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:24.024 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:24.024 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 06:36:24.034 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 06:36:24.034 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38145, sync = True, waitForSettling = False)
17-03-18 06:36:24.034 -07 000000447 INF: Z Motor: Moving to -0.174617 mm, started at -0.168171 mm, distance = -6.45 um
17-03-18 06:36:24.034 -07 000000447 INF: FPGA: Xmit ZDACW 38145\n [Z Motor]
17-03-18 06:36:24.044 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:24.044 -07 000000626 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:36:24.044 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:36:24.044 -07 000000447 INF: FPGA: 'ZDACW 38145' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 06:36:24.044 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:24.044 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 232 ms to get response, and 236 ms overall
17-03-18 06:36:24.044 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 222 ms to get response, and 233 ms overall
17-03-18 06:36:24.044 -07 000000455 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:24.044 -07 000000455 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:36:24.044 -07 000000455 INF: Y Motor: Moving 1355 steps-34
17-03-18 06:36:24.044 -07 000000626 INF: FPGA: Recv ZDACR 38145
17-03-18 06:36:24.054 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:36:24.054 -07 000000447 INF: Z Motor: MoveAbsStepped took 11 ms (did NOT wait for settling yet))
17-03-18 06:36:24.054 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:36:24.064 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:36:24.264 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:36:24.264 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-18 06:36:24.424 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 06:36:24.424 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 06:36:24.484 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:24.484 -07 000000606 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:36:24.494 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:24.494 -07 000000455 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:24.494 -07 000000455 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:36:24.494 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.847 mm, average velocity = 2.205 mm/sec
17-03-18 06:36:25.444 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:25.444 -07 000000447 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:36:25.454 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:25.454 -07 000000455 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:25.484 -07 000000455 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:36:25.484 -07 000000455 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:36:25.484 -07 000000455 INF: Y Motor: Moved to 69.8618 after 1675 ms (table move)
17-03-18 06:36:25.484 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174617 mm (DAC = 38145)
17-03-18 06:36:25.484 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:25.494 -07 000000561 INF: FPGA: Recv ZSGSRD 36466
17-03-18 06:36:25.494 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 06:36:25.494 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:25.494 -07 000000455 INF: FPGA: Recv ZSGSRD 36472
17-03-18 06:36:25.504 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:36:25.504 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:25.504 -07 000000626 INF: FPGA: Recv ZSGSRD 36469
17-03-18 06:36:25.514 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:25.514 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:25.514 -07 000000626 INF: FPGA: Recv ZSGSRD 36464
17-03-18 06:36:25.524 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:25.524 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:25.524 -07 000000626 INF: FPGA: Recv ZSGSRD 36471
17-03-18 06:36:25.534 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:25.534 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:25.534 -07 000000561 INF: FPGA: Recv ZSGSRD 36477
17-03-18 06:36:25.544 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:25.544 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:25.544 -07 000000455 INF: FPGA: Recv ZSGSRD 36472
17-03-18 06:36:25.554 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:25.554 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:25.554 -07 000000447 INF: FPGA: Recv ZSGSRD 36473
17-03-18 06:36:25.564 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:25.564 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:25.564 -07 000000561 INF: FPGA: Recv ZSGSRD 36482
17-03-18 06:36:25.574 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:25.574 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:25.574 -07 000000626 INF: FPGA: Recv ZSGSRD 36471
17-03-18 06:36:25.584 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:25.584 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:25.584 -07 000000606 INF: FPGA: Recv ZPIEZORD 32559
17-03-18 06:36:25.594 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:25.594 -07 000000438 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.821 V. Piezo Error = -8.7 V.
17-03-18 06:36:25.594 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36472 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36472 (-173.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36464 (-173.7 uncal um), Max = 36482 (-173.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:36:25.594 -07 000000438 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36472, posNoise = 10, negNoise = 8
17-03-18 06:36:25.594 -07 000000438 INF: Z Motor: After move to -0.174617, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:25.594 -07 000000438 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-18 06:36:25.594 -07 000000438 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:36:25.644 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1833 ms
17-03-18 06:36:25.644 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:36:25.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:25.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:25.644 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:25.644 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:25.644 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:36:25.644 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:25.644 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:25.644 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:36:25.654 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:36:25.654 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:36:25.664 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:36:25.664 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:36:25.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:36:25.714 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:36:26.014 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:36:26.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:36:26.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:36:26.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614208944, 0x0, 559484976) start.
17-03-18 06:36:26.054 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:36:26.054 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 06:36:26.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:36:26.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614208944, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 06:36:26.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:26.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:36:26.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:36:26.154 -07 000000606 INF: Autofocus start
17-03-18 06:36:26.154 -07 000000606 INF: MeasureProfile start
17-03-18 06:36:26.154 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:26.154 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:26.164 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:36:26.164 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:36:26.164 -07 000000606 INF: MeasureProfile done
17-03-18 06:36:26.164 -07 000000606 INF: X=-96  Z correction [um]=-0.5732754
17-03-18 06:36:26.164 -07 000000606 INF: Autofocus finished
17-03-18 06:36:26.364 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:36:26.364 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 06:36:26.364 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.174627217245441. ----------
17-03-18 06:36:26.364 -07 000000610 INF: Cycle	151	Tile	13	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:36:26.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36532, sync = True, waitForSettling = True)
17-03-18 06:36:26.374 -07 000000610 INF: Z Motor: Moving to -0.167233 mm, started at -0.174627 mm, distance = 7.39 um
17-03-18 06:36:26.374 -07 000000610 INF: FPGA: Xmit ZDACW 36532\n [Z Motor]
17-03-18 06:36:26.374 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:36:26.384 -07 000000610 INF: FPGA: 'ZDACW 36532' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:26.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:26.384 -07 000000382 INF: FPGA: Recv ZDACR 36532
17-03-18 06:36:26.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:26.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:36:26.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:26.544 -07 000000606 INF: FPGA: Recv ZSGSRD 35323
17-03-18 06:36:26.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:26.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:26.554 -07 000000455 INF: FPGA: Recv ZSGSRD 35323
17-03-18 06:36:26.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:26.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:26.564 -07 000000606 INF: FPGA: Recv ZSGSRD 35319
17-03-18 06:36:26.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:26.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:26.574 -07 000000455 INF: FPGA: Recv ZSGSRD 35322
17-03-18 06:36:26.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:26.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:26.584 -07 000000447 INF: FPGA: Recv ZSGSRD 35330
17-03-18 06:36:26.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:26.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:26.594 -07 000000455 INF: FPGA: Recv ZSGSRD 35324
17-03-18 06:36:26.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:26.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:26.604 -07 000000438 INF: FPGA: Recv ZSGSRD 35319
17-03-18 06:36:26.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:26.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:26.614 -07 000000455 INF: FPGA: Recv ZSGSRD 35324
17-03-18 06:36:26.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:26.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:26.624 -07 000000606 INF: FPGA: Recv ZSGSRD 35324
17-03-18 06:36:26.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:26.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:26.634 -07 000000626 INF: FPGA: Recv ZSGSRD 35321
17-03-18 06:36:26.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:26.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:26.644 -07 000000382 INF: FPGA: Recv ZPIEZORD 31040
17-03-18 06:36:26.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:26.654 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -9.4 V.
17-03-18 06:36:26.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35323 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35323 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35319 (-166.4 uncal um), Max = 35330 (-166.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:36:26.654 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35323, posNoise = 7, negNoise = 4
17-03-18 06:36:26.654 -07 000000610 INF: Z Motor: After move to -0.167233, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:26.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:36:26.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:26.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:26.654 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:26.654 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:26.654 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:36:26.654 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:36:26.654 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:36:26.654 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:26.654 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:36:26.654 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:36:26.654 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:26.654 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:36:26.654 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:36:26.664 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:36:26.664 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:36:26.664 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:36:26.674 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:36:26.674 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:36:26.674 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 06:36:26.674 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:36:26.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36709 150\n [Camera]
17-03-18 06:36:26.874 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:36:26.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:36:26.874 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:36:27.344 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:36:27.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:36:27.344 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:27.344 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:27.344 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:36:27.344 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:36:27.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:36:27.344 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:27.344 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:27.344 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:36:27.534 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36709 848
17-03-18 06:36:27.684 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:36:27.744 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:36:27.744 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:36:27.744 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:27.744 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:36:27.744 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:27.744 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:36:27.744 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:36:27.744 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:27.744 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:27.754 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:36:27.904 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:36:27.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:36:27.904 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:27.904 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:27.904 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:36:27.904 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:36:27.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:36:27.904 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:27.904 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:27.904 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:36:28.044 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.990831,
17-03-18 06:36:28.094 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:36:28.094 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:36:28.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36709 150' command took 2 ms to send, 1417 ms to get response, and 1421 ms overall
17-03-18 06:36:28.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:36:28.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86181640625, Z-Position -0.167245797494557. ------
17-03-18 06:36:28.104 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:28.104 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17365 mm
17-03-18 06:36:28.104 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:36:28.104 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:36:28.104 -07 000000606 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-18 06:36:28.114 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:28.294 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 06:36:28.294 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:36:28.294 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:28.294 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:28.294 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:36:28.294 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:36:28.294 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:28.304 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:36:28.304 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:36:28.304 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:36:28.314 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:28.314 -07 000000382 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:36:28.314 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 207 ms to get response, and 214 ms overall
17-03-18 06:36:28.314 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 197 ms to get response, and 211 ms overall
17-03-18 06:36:28.314 -07 000000606 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:28.314 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:36:28.324 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37933, sync = True, waitForSettling = False)
17-03-18 06:36:28.324 -07 000000626 INF: Z Motor: Moving to -0.173646 mm, started at -0.167246 mm, distance = -6.40 um
17-03-18 06:36:28.324 -07 000000606 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:36:28.324 -07 000000606 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:36:28.334 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:36:28.344 -07 000000626 INF: FPGA: Xmit ZDACW 37933\n [Z Motor]
17-03-18 06:36:28.344 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:36:28.354 -07 000000626 INF: FPGA: 'ZDACW 37933' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:36:28.354 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:28.354 -07 000000382 INF: FPGA: Recv ZDACR 37933
17-03-18 06:36:28.364 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:28.364 -07 000000626 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 06:36:28.524 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:36:28.524 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 193 ms to get response, and 205 ms overall
17-03-18 06:36:28.704 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:36:28.704 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 06:36:28.764 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:28.764 -07 000000626 INF: FPGA: Recv YRDPOS 144767
17-03-18 06:36:28.774 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:28.774 -07 000000606 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:28.774 -07 000000606 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:36:28.774 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.841 mm, average velocity = 2.195 mm/sec
17-03-18 06:36:29.724 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:29.724 -07 000000382 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:36:29.734 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:29.734 -07 000000606 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:29.764 -07 000000606 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:36:29.764 -07 000000606 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:36:29.764 -07 000000606 INF: Y Motor: Moved to 70.6875 after 1656 ms (table move)
17-03-18 06:36:29.764 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173646 mm (DAC = 37933)
17-03-18 06:36:29.764 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:29.774 -07 000000455 INF: FPGA: Recv ZSGSRD 36323
17-03-18 06:36:29.774 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:36:29.774 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:29.774 -07 000000606 INF: FPGA: Recv ZSGSRD 36330
17-03-18 06:36:29.784 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:29.784 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:29.784 -07 000000608 INF: FPGA: Recv ZSGSRD 36319
17-03-18 06:36:29.794 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:29.794 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:29.794 -07 000000455 INF: FPGA: Recv ZSGSRD 36312
17-03-18 06:36:29.804 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:29.804 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:29.804 -07 000000569 INF: FPGA: Recv ZSGSRD 36319
17-03-18 06:36:29.814 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:29.814 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:29.814 -07 000000626 INF: FPGA: Recv ZSGSRD 36326
17-03-18 06:36:29.824 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:29.824 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:29.824 -07 000000569 INF: FPGA: Recv ZSGSRD 36326
17-03-18 06:36:29.834 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:29.834 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:29.834 -07 000000626 INF: FPGA: Recv ZSGSRD 36322
17-03-18 06:36:29.844 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:29.844 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:29.844 -07 000000382 INF: FPGA: Recv ZSGSRD 36319
17-03-18 06:36:29.854 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:29.854 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:29.854 -07 000000590 INF: FPGA: Recv ZSGSRD 36321
17-03-18 06:36:29.864 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:29.864 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:29.864 -07 000000606 INF: FPGA: Recv ZPIEZORD 32355
17-03-18 06:36:29.874 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:29.874 -07 000000447 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.788 V. Piezo Error = -8.8 V.
17-03-18 06:36:29.874 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36322 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36322 (-172.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36312 (-172.7 uncal um), Max = 36330 (-172.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:36:29.874 -07 000000447 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36322, posNoise = 8, negNoise = 10
17-03-18 06:36:29.874 -07 000000447 INF: Z Motor: After move to -0.173646, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:29.874 -07 000000447 INF: Z Motor: Settle wait time = 1447 ms, measure time = 102 ms (allowed 150 ms), total time = 1549 ms
17-03-18 06:36:29.874 -07 000000447 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:36:29.924 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1816 ms
17-03-18 06:36:29.924 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:36:29.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:29.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:29.924 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:29.924 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:29.924 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:36:29.924 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:29.924 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:29.924 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:36:29.934 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:36:29.934 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:36:29.944 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:36:29.944 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:36:29.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:36:29.984 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:36:30.284 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:36:30.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:36:30.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:36:30.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-18 06:36:30.324 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:36:30.324 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 06:36:30.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:36:30.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 06:36:30.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:30.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:36:30.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:36:30.424 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:30.424 -07 000000455 INF: Autofocus start
17-03-18 06:36:30.424 -07 000000455 INF: MeasureProfile start
17-03-18 06:36:30.424 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:30.434 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:36:30.434 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:36:30.434 -07 000000455 INF: MeasureProfile done
17-03-18 06:36:30.434 -07 000000455 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:36:30.444 -07 000000455 INF: Autofocus finished
17-03-18 06:36:30.634 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:36:30.634 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:36:30.634 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.173663585424176. ----------
17-03-18 06:36:30.644 -07 000000610 INF: Cycle	151	Tile	14	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:36:30.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36430, sync = True, waitForSettling = True)
17-03-18 06:36:30.644 -07 000000610 INF: Z Motor: Moving to -0.166766 mm, started at -0.173664 mm, distance = 6.90 um
17-03-18 06:36:30.644 -07 000000610 INF: FPGA: Xmit ZDACW 36430\n [Z Motor]
17-03-18 06:36:30.644 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:36:30.654 -07 000000610 INF: FPGA: 'ZDACW 36430' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:36:30.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:30.654 -07 000000626 INF: FPGA: Recv ZDACR 36430
17-03-18 06:36:30.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:30.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:36:30.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:30.814 -07 000000447 INF: FPGA: Recv ZSGSRD 35250
17-03-18 06:36:30.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:30.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:30.824 -07 000000455 INF: FPGA: Recv ZSGSRD 35247
17-03-18 06:36:30.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:30.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:30.834 -07 000000447 INF: FPGA: Recv ZSGSRD 35249
17-03-18 06:36:30.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:30.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:30.844 -07 000000455 INF: FPGA: Recv ZSGSRD 35251
17-03-18 06:36:30.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:30.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:30.854 -07 000000382 INF: FPGA: Recv ZSGSRD 35252
17-03-18 06:36:30.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:30.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:30.864 -07 000000455 INF: FPGA: Recv ZSGSRD 35251
17-03-18 06:36:30.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:30.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:30.874 -07 000000606 INF: FPGA: Recv ZSGSRD 35249
17-03-18 06:36:30.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:30.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:30.884 -07 000000461 INF: FPGA: Recv ZSGSRD 35249
17-03-18 06:36:30.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:30.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:30.894 -07 000000455 INF: FPGA: Recv ZSGSRD 35245
17-03-18 06:36:30.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:30.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:30.904 -07 000000461 INF: FPGA: Recv ZSGSRD 35251
17-03-18 06:36:30.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:30.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:30.914 -07 000000606 INF: FPGA: Recv ZPIEZORD 30946
17-03-18 06:36:30.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:30.924 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.5 V.
17-03-18 06:36:30.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35249 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35250 (-165.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35245 (-165.9 uncal um), Max = 35252 (-165.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:36:30.924 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35249, posNoise = 3, negNoise = 4
17-03-18 06:36:30.924 -07 000000610 INF: Z Motor: After move to -0.166766, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:30.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:36:30.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:30.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:30.924 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:30.924 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:30.924 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:36:30.924 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:36:30.924 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:36:30.924 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:30.924 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:36:30.924 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:36:30.924 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:30.924 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:36:30.934 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:36:30.934 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:36:30.934 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:30.934 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:36:30.944 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:36:30.944 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:36:30.944 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:36:30.944 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:36:30.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36606 150\n [Camera]
17-03-18 06:36:31.144 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:36:31.604 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:36:31.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:36:31.604 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:31.604 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:31.604 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:36:31.614 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:36:31.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:36:31.614 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:31.614 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:31.614 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:36:31.804 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36606 848
17-03-18 06:36:31.874 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:36:31.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:36:31.944 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:36:31.984 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:36:31.984 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:36:31.984 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:31.984 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:31.994 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:36:31.994 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:36:31.994 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:31.994 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:31.994 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:36:31.994 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:36:32.174 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:36:32.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:36:32.174 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:32.174 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:32.174 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 06:36:32.174 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:36:32.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:36:32.174 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:32.174 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:32.174 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 06:36:32.364 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-18 06:36:32.364 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:36:32.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36606 150' command took 2 ms to send, 1415 ms to get response, and 1420 ms overall
17-03-18 06:36:32.364 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:36:32.364 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.166770405796067. ------
17-03-18 06:36:32.374 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:32.374 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17354 mm
17-03-18 06:36:32.374 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:36:32.374 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:32.374 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:36:32.374 -07 000000382 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 06:36:32.374 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 37909, sync = True, waitForSettling = False)
17-03-18 06:36:32.374 -07 000000447 INF: Z Motor: Moving to -0.173536 mm, started at -0.166770 mm, distance = -6.77 um
17-03-18 06:36:32.384 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:32.384 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:32.384 -07 000000461 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:36:32.394 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:36:32.394 -07 000000447 INF: FPGA: Xmit ZDACW 37909\n [Z Motor]
17-03-18 06:36:32.394 -07 000000382 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:32.394 -07 000000382 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:36:32.394 -07 000000382 INF: Y Motor: Moving 1352 steps-32
17-03-18 06:36:32.394 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:36:32.404 -07 000000447 INF: FPGA: 'ZDACW 37909' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:36:32.404 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:36:32.414 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:36:32.424 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:32.574 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:36:32.574 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:36:32.574 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:32.574 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:36:32.574 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:36:32.574 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:32.584 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:32.584 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:36:32.584 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:36:32.594 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:36:32.604 -07 000000608 INF: FPGA: Recv ZDACR 37909
17-03-18 06:36:32.604 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 170 ms to get response, and 200 ms overall
17-03-18 06:36:32.604 -07 000000447 INF: Z Motor: MoveAbsStepped took 223 ms (did NOT wait for settling yet))
17-03-18 06:36:32.604 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:36:32.604 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:36:32.784 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:36:32.784 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:36:32.844 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:32.844 -07 000000447 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:36:32.854 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:32.854 -07 000000382 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:32.854 -07 000000382 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:36:32.854 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 06:36:33.424 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.997626,
17-03-18 06:36:33.804 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:33.804 -07 000000606 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:36:33.814 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:33.814 -07 000000382 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:33.844 -07 000000382 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:36:33.844 -07 000000382 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:36:33.844 -07 000000382 INF: Y Motor: Moved to 71.5176 after 1466 ms (table move)
17-03-18 06:36:33.844 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173536 mm (DAC = 37909)
17-03-18 06:36:33.844 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:33.844 -07 000000608 INF: FPGA: Recv ZSGSRD 36311
17-03-18 06:36:33.854 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:36:33.854 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:33.854 -07 000000382 INF: FPGA: Recv ZSGSRD 36305
17-03-18 06:36:33.864 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:33.864 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:33.864 -07 000000447 INF: FPGA: Recv ZSGSRD 36306
17-03-18 06:36:33.874 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:33.874 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:33.874 -07 000000606 INF: FPGA: Recv ZSGSRD 36297
17-03-18 06:36:33.884 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:33.884 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:33.884 -07 000000447 INF: FPGA: Recv ZSGSRD 36303
17-03-18 06:36:33.894 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:33.894 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:33.894 -07 000000606 INF: FPGA: Recv ZSGSRD 36308
17-03-18 06:36:33.904 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:33.904 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:33.904 -07 000000447 INF: FPGA: Recv ZSGSRD 36301
17-03-18 06:36:33.914 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:33.914 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:33.914 -07 000000606 INF: FPGA: Recv ZSGSRD 36298
17-03-18 06:36:33.924 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:33.924 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:33.924 -07 000000608 INF: FPGA: Recv ZSGSRD 36308
17-03-18 06:36:33.934 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:33.934 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:33.934 -07 000000590 INF: FPGA: Recv ZSGSRD 36305
17-03-18 06:36:33.944 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:33.944 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:33.944 -07 000000606 INF: FPGA: Recv ZPIEZORD 32378
17-03-18 06:36:33.954 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:33.954 -07 000000591 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.785 V. Piezo Error = -8.7 V.
17-03-18 06:36:33.954 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36304 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36305 (-172.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36297 (-172.6 uncal um), Max = 36311 (-172.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:36:33.954 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36304, posNoise = 7, negNoise = 7
17-03-18 06:36:33.954 -07 000000591 INF: Z Motor: After move to -0.173536, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:33.954 -07 000000591 INF: Z Motor: Settle wait time = 1469 ms, measure time = 106 ms (allowed 150 ms), total time = 1575 ms
17-03-18 06:36:33.954 -07 000000591 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:36:34.004 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 06:36:34.004 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:36:34.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:34.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:34.004 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:34.004 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:34.004 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:36:34.004 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:34.004 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:36:34.004 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:36:34.014 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:34.014 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:36:34.014 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:36:34.014 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:36:34.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:36:34.064 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:36:34.364 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:36:34.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:36:34.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:36:34.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 06:36:34.404 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:36:34.404 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:36:34.404 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:36:34.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:36:34.484 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:34.484 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:36:34.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:36:34.504 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:34.504 -07 000000608 INF: Autofocus start
17-03-18 06:36:34.504 -07 000000608 INF: MeasureProfile start
17-03-18 06:36:34.504 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:34.514 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:36:34.514 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:36:34.524 -07 000000608 INF: MeasureProfile done
17-03-18 06:36:34.524 -07 000000608 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:36:34.524 -07 000000608 INF: Autofocus finished
17-03-18 06:36:34.714 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:36:34.714 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:36:34.714 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.173547949605625. ----------
17-03-18 06:36:34.724 -07 000000610 INF: Cycle	151	Tile	15	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:36:34.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36406, sync = True, waitForSettling = True)
17-03-18 06:36:34.724 -07 000000610 INF: Z Motor: Moving to -0.166656 mm, started at -0.173548 mm, distance = 6.89 um
17-03-18 06:36:34.724 -07 000000610 INF: FPGA: Xmit ZDACW 36406\n [Z Motor]
17-03-18 06:36:34.724 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:36:34.734 -07 000000610 INF: FPGA: 'ZDACW 36406' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:36:34.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:34.734 -07 000000561 INF: FPGA: Recv ZDACR 36406
17-03-18 06:36:34.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:34.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:36:34.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:34.894 -07 000000608 INF: FPGA: Recv ZSGSRD 35225
17-03-18 06:36:34.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:34.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:34.904 -07 000000591 INF: FPGA: Recv ZSGSRD 35238
17-03-18 06:36:34.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:34.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:34.914 -07 000000561 INF: FPGA: Recv ZSGSRD 35232
17-03-18 06:36:34.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:34.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:34.924 -07 000000591 INF: FPGA: Recv ZSGSRD 35235
17-03-18 06:36:34.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:34.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:34.934 -07 000000561 INF: FPGA: Recv ZSGSRD 35236
17-03-18 06:36:34.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:34.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:34.944 -07 000000591 INF: FPGA: Recv ZSGSRD 35240
17-03-18 06:36:34.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:34.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:34.954 -07 000000447 INF: FPGA: Recv ZSGSRD 35234
17-03-18 06:36:34.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:34.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:34.964 -07 000000590 INF: FPGA: Recv ZSGSRD 35230
17-03-18 06:36:34.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:34.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:34.974 -07 000000382 INF: FPGA: Recv ZSGSRD 35234
17-03-18 06:36:34.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:34.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:34.984 -07 000000591 INF: FPGA: Recv ZSGSRD 35230
17-03-18 06:36:34.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:34.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:34.994 -07 000000569 INF: FPGA: Recv ZPIEZORD 30949
17-03-18 06:36:35.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:35.004 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.555 V. Piezo Error = -9.4 V.
17-03-18 06:36:35.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35233 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35234 (-165.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35225 (-165.7 uncal um), Max = 35240 (-165.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:36:35.004 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35233, posNoise = 7, negNoise = 8
17-03-18 06:36:35.004 -07 000000610 INF: Z Motor: After move to -0.166656, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:35.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:36:35.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:35.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:35.004 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:35.004 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:35.004 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:36:35.004 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:36:35.004 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:36:35.004 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:35.004 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:36:35.004 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:36:35.004 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:35.004 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:36:35.004 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:36:35.014 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:36:35.014 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:36:35.014 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:36:35.024 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:36:35.024 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:36:35.024 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:36:35.024 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:36:35.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36583 150\n [Camera]
17-03-18 06:36:35.234 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:36:35.694 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:36:35.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:36:35.694 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:35.694 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:35.694 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:36:35.704 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:36:35.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:36:35.704 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:35.704 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:35.704 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:36:35.884 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36583 848
17-03-18 06:36:36.034 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:36:36.094 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:36:36.094 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:36:36.094 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:36.104 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:36.104 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:36:36.104 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:36:36.104 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:36:36.104 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:36.104 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:36.114 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:36:36.264 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:36:36.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:36:36.264 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:36.264 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:36.264 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:36:36.264 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:36:36.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:36:36.264 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:36.264 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:36.264 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:36:36.454 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:36:36.454 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:36:36.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36583 150' command took 2 ms to send, 1417 ms to get response, and 1423 ms overall
17-03-18 06:36:36.454 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:36:36.454 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.166667618401799. ------
17-03-18 06:36:36.464 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:36.464 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17305 mm
17-03-18 06:36:36.464 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:36:36.464 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:36:36.464 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37803, sync = True, waitForSettling = False)
17-03-18 06:36:36.464 -07 000000606 INF: Z Motor: Moving to -0.173051 mm, started at -0.166668 mm, distance = -6.38 um
17-03-18 06:36:36.464 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:36.464 -07 000000591 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 06:36:36.474 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:36:36.474 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:36.474 -07 000000569 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:36:36.484 -07 000000606 INF: FPGA: Xmit ZDACW 37803\n [Z Motor]
17-03-18 06:36:36.484 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:36:36.484 -07 000000591 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:36.484 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:36:36.484 -07 000000591 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:36:36.484 -07 000000591 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:36:36.494 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:36:36.494 -07 000000606 INF: FPGA: 'ZDACW 37803' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:36:36.504 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:36:36.514 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:36.514 -07 000000512 INF: FPGA: Recv ZDACR 37803
17-03-18 06:36:36.524 -07 000000606 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:36:36.524 -07 000000606 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:36:36.664 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:36:36.664 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:36:36.664 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:36.664 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:36:36.664 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:36:36.664 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:36.674 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:36.674 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:36:36.674 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:36:36.674 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:36:36.694 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:36:36.694 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 06:36:36.874 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:36:36.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:36:36.874 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:36:36.874 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 06:36:36.934 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:36.934 -07 000000382 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:36:36.944 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:36.944 -07 000000591 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:36.944 -07 000000591 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:36:36.944 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.150 mm/sec
17-03-18 06:36:37.894 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:37.894 -07 000000438 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:36:37.904 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:37.904 -07 000000591 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:37.934 -07 000000591 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:36:37.934 -07 000000591 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:36:37.934 -07 000000591 INF: Y Motor: Moved to 72.3486 after 1466 ms (table move)
17-03-18 06:36:37.934 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173051 mm (DAC = 37803)
17-03-18 06:36:37.934 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:37.944 -07 000000590 INF: FPGA: Recv ZSGSRD 36229
17-03-18 06:36:37.944 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:36:37.944 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:37.944 -07 000000590 INF: FPGA: Recv ZSGSRD 36228
17-03-18 06:36:37.954 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:37.954 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:37.954 -07 000000591 INF: FPGA: Recv ZSGSRD 36224
17-03-18 06:36:37.964 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:37.964 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:37.964 -07 000000382 INF: FPGA: Recv ZSGSRD 36231
17-03-18 06:36:37.974 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:37.974 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:37.974 -07 000000590 INF: FPGA: Recv ZSGSRD 36228
17-03-18 06:36:37.984 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:37.984 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:37.984 -07 000000591 INF: FPGA: Recv ZSGSRD 36229
17-03-18 06:36:37.994 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:37.994 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:37.994 -07 000000591 INF: FPGA: Recv ZSGSRD 36227
17-03-18 06:36:38.004 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:38.004 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:38.004 -07 000000382 INF: FPGA: Recv ZSGSRD 36229
17-03-18 06:36:38.014 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:38.014 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:38.014 -07 000000590 INF: FPGA: Recv ZSGSRD 36233
17-03-18 06:36:38.024 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:38.024 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:38.024 -07 000000382 INF: FPGA: Recv ZSGSRD 36230
17-03-18 06:36:38.034 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:38.034 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:38.034 -07 000000438 INF: FPGA: Recv ZPIEZORD 32296
17-03-18 06:36:38.044 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:38.044 -07 000000608 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.768 V. Piezo Error = -8.7 V.
17-03-18 06:36:38.044 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36229 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36229 (-172.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36224 (-172.2 uncal um), Max = 36233 (-172.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:36:38.044 -07 000000608 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36229, posNoise = 4, negNoise = 5
17-03-18 06:36:38.044 -07 000000608 INF: Z Motor: After move to -0.173051, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:38.044 -07 000000608 INF: Z Motor: Settle wait time = 1471 ms, measure time = 104 ms (allowed 150 ms), total time = 1575 ms
17-03-18 06:36:38.044 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:36:38.094 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:36:38.094 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:36:38.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:38.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:38.094 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:38.094 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:38.094 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:36:38.094 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:38.094 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:38.094 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:36:38.104 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:38.104 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:36:38.104 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:36:38.104 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:36:38.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:36:38.154 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:36:38.454 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:36:38.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:36:38.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:36:38.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 06:36:38.494 -07 000000382 INF: FPGA: Recv @CAMSNAP 381
17-03-18 06:36:38.494 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 06:36:38.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 06:36:38.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:36:38.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:38.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:36:38.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:36:38.594 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:38.594 -07 000000608 INF: Autofocus start
17-03-18 06:36:38.594 -07 000000608 INF: MeasureProfile start
17-03-18 06:36:38.594 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:38.604 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:36:38.604 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:36:38.604 -07 000000608 INF: MeasureProfile done
17-03-18 06:36:38.604 -07 000000608 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:36:38.604 -07 000000608 INF: Autofocus finished
17-03-18 06:36:38.784 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.008536,
17-03-18 06:36:38.804 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:36:38.804 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:36:38.804 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.173066133694993. ----------
17-03-18 06:36:38.814 -07 000000610 INF: Cycle	151	Tile	16	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:36:38.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36354, sync = True, waitForSettling = True)
17-03-18 06:36:38.814 -07 000000610 INF: Z Motor: Moving to -0.166418 mm, started at -0.173066 mm, distance = 6.65 um
17-03-18 06:36:38.824 -07 000000610 INF: FPGA: Xmit ZDACW 36354\n [Z Motor]
17-03-18 06:36:38.824 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:36:38.834 -07 000000610 INF: FPGA: 'ZDACW 36354' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:36:38.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:38.834 -07 000000608 INF: FPGA: Recv ZDACR 36354
17-03-18 06:36:38.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:38.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:36:38.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:38.994 -07 000000382 INF: FPGA: Recv ZSGSRD 35191
17-03-18 06:36:39.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:39.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:39.004 -07 000000626 INF: FPGA: Recv ZSGSRD 35193
17-03-18 06:36:39.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:39.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:39.014 -07 000000591 INF: FPGA: Recv ZSGSRD 35198
17-03-18 06:36:39.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:39.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:39.024 -07 000000590 INF: FPGA: Recv ZSGSRD 35196
17-03-18 06:36:39.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:39.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:39.034 -07 000000438 INF: FPGA: Recv ZSGSRD 35193
17-03-18 06:36:39.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:39.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:39.044 -07 000000591 INF: FPGA: Recv ZSGSRD 35195
17-03-18 06:36:39.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:39.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:39.054 -07 000000438 INF: FPGA: Recv ZSGSRD 35197
17-03-18 06:36:39.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:39.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:39.064 -07 000000591 INF: FPGA: Recv ZSGSRD 35199
17-03-18 06:36:39.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:39.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:39.074 -07 000000438 INF: FPGA: Recv ZSGSRD 35194
17-03-18 06:36:39.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:39.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:39.084 -07 000000591 INF: FPGA: Recv ZSGSRD 35196
17-03-18 06:36:39.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:39.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:39.094 -07 000000590 INF: FPGA: Recv ZPIEZORD 30887
17-03-18 06:36:39.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:39.104 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.547 V. Piezo Error = -9.5 V.
17-03-18 06:36:39.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35195 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35196 (-165.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35191 (-165.5 uncal um), Max = 35199 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:36:39.104 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35195, posNoise = 4, negNoise = 4
17-03-18 06:36:39.104 -07 000000610 INF: Z Motor: After move to -0.166418, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:39.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 06:36:39.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:39.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:39.104 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:39.104 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:39.104 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:36:39.104 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:39.104 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:36:39.104 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:36:39.104 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:36:39.104 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:36:39.104 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:36:39.104 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:36:39.114 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:36:39.114 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:36:39.114 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:36:39.114 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:36:39.124 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:36:39.124 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:36:39.124 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:36:39.124 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:36:39.134 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36531 150\n [Camera]
17-03-18 06:36:39.324 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:36:39.794 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:36:39.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:36:39.794 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:39.794 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:39.794 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 06:36:39.794 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:36:39.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:36:39.794 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:39.794 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:39.794 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 06:36:39.984 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36531 848
17-03-18 06:36:40.134 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:36:40.174 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:36:40.174 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:36:40.174 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:40.174 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:40.174 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:36:40.174 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:36:40.174 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:40.184 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:40.184 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:36:40.184 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:36:40.354 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:36:40.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:36:40.364 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:40.364 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:40.364 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 06:36:40.364 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:36:40.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:36:40.364 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:40.364 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:40.364 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 06:36:40.554 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:36:40.554 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:36:40.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36531 150' command took 2 ms to send, 1411 ms to get response, and 1421 ms overall
17-03-18 06:36:40.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:36:40.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.166423498340412. ------
17-03-18 06:36:40.554 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:40.554 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17285 mm
17-03-18 06:36:40.554 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:36:40.704 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:40.704 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 145 ms overall
17-03-18 06:36:40.704 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:36:40.704 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37760, sync = True, waitForSettling = False)
17-03-18 06:36:40.704 -07 000000626 INF: Z Motor: Moving to -0.172854 mm, started at -0.166423 mm, distance = -6.43 um
17-03-18 06:36:40.704 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:36:40.704 -07 000000512 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 06:36:40.714 -07 000000626 INF: FPGA: Xmit ZDACW 37760\n [Z Motor]
17-03-18 06:36:40.714 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:36:40.724 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:40.724 -07 000000626 INF: FPGA: 'ZDACW 37760' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:36:40.724 -07 000000447 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:36:40.734 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:36:40.734 -07 000000512 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:40.734 -07 000000512 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:36:40.734 -07 000000512 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:36:40.734 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:40.734 -07 000000480 INF: FPGA: Recv ZDACR 37760
17-03-18 06:36:40.744 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:36:40.744 -07 000000626 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:36:40.744 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:36:40.774 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 418 ms.
17-03-18 06:36:40.774 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-18 06:36:40.774 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:40.774 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 415 ms.
17-03-18 06:36:40.774 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:36:40.774 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:40.784 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:40.784 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:36:40.784 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 426 ms.
17-03-18 06:36:40.784 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 426 ms.
17-03-18 06:36:40.904 -07 000000447 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:36:40.904 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:36:41.114 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:36:41.114 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:36:41.164 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:41.174 -07 000000591 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:36:41.174 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:36:41.174 -07 000000512 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:41.174 -07 000000512 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 06:36:41.174 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-18 06:36:41.874 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:36:41.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:36:42.124 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:42.124 -07 000000480 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:36:42.134 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:42.134 -07 000000512 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:42.164 -07 000000512 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:36:42.164 -07 000000512 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:36:42.164 -07 000000512 INF: Y Motor: Moved to 73.1748 after 1463 ms (table move)
17-03-18 06:36:42.174 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172854 mm (DAC = 37760)
17-03-18 06:36:42.174 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:42.174 -07 000000382 INF: FPGA: Recv ZSGSRD 36203
17-03-18 06:36:42.184 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:36:42.184 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:42.184 -07 000000382 INF: FPGA: Recv ZSGSRD 36199
17-03-18 06:36:42.194 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:42.194 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:42.194 -07 000000382 INF: FPGA: Recv ZSGSRD 36196
17-03-18 06:36:42.204 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:42.204 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:42.204 -07 000000382 INF: FPGA: Recv ZSGSRD 36205
17-03-18 06:36:42.214 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:42.214 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:42.214 -07 000000590 INF: FPGA: Recv ZSGSRD 36197
17-03-18 06:36:42.224 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:42.224 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:42.224 -07 000000447 INF: FPGA: Recv ZSGSRD 36195
17-03-18 06:36:42.234 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:42.234 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:42.234 -07 000000626 INF: FPGA: Recv ZSGSRD 36199
17-03-18 06:36:42.244 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:42.244 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:42.244 -07 000000447 INF: FPGA: Recv ZSGSRD 36200
17-03-18 06:36:42.254 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:42.254 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:42.254 -07 000000626 INF: FPGA: Recv ZSGSRD 36198
17-03-18 06:36:42.264 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:42.264 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:42.264 -07 000000447 INF: FPGA: Recv ZSGSRD 36195
17-03-18 06:36:42.274 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:42.274 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:42.274 -07 000000590 INF: FPGA: Recv ZPIEZORD 32233
17-03-18 06:36:42.284 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:42.284 -07 000000437 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.762 V. Piezo Error = -8.8 V.
17-03-18 06:36:42.284 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36199 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36198 (-172.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36195 (-172.0 uncal um), Max = 36205 (-172.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:36:42.284 -07 000000437 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36199, posNoise = 6, negNoise = 4
17-03-18 06:36:42.284 -07 000000437 INF: Z Motor: After move to -0.172854, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:42.284 -07 000000437 INF: Z Motor: Settle wait time = 1467 ms, measure time = 108 ms (allowed 150 ms), total time = 1575 ms
17-03-18 06:36:42.284 -07 000000437 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 06:36:42.334 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1774 ms
17-03-18 06:36:42.334 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:36:42.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:42.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:42.334 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:42.334 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:42.334 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:36:42.334 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:42.334 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:42.334 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:36:42.344 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:42.344 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:36:42.344 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:36:42.344 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:36:42.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:36:42.394 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 06:36:42.694 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 06:36:42.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 06:36:42.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:36:42.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:36:42.734 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:36:42.734 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 06:36:42.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:36:42.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:36:42.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:42.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:36:42.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:36:42.834 -07 000000480 INF: Autofocus start
17-03-18 06:36:42.834 -07 000000480 INF: MeasureProfile start
17-03-18 06:36:42.834 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:42.834 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:42.844 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:36:42.844 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:36:42.844 -07 000000480 INF: MeasureProfile done
17-03-18 06:36:42.844 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:36:42.844 -07 000000480 INF: Autofocus finished
17-03-18 06:36:43.044 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:36:43.044 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:36:43.044 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.17287340733074. ----------
17-03-18 06:36:43.054 -07 000000610 INF: Cycle	151	Tile	17	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:36:43.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36275, sync = True, waitForSettling = True)
17-03-18 06:36:43.054 -07 000000610 INF: Z Motor: Moving to -0.166056 mm, started at -0.172873 mm, distance = 6.82 um
17-03-18 06:36:43.054 -07 000000610 INF: FPGA: Xmit ZDACW 36275\n [Z Motor]
17-03-18 06:36:43.054 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:36:43.064 -07 000000610 INF: FPGA: 'ZDACW 36275' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:36:43.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:43.064 -07 000000626 INF: FPGA: Recv ZDACR 36275
17-03-18 06:36:43.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:43.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:36:43.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:43.224 -07 000000626 INF: FPGA: Recv ZSGSRD 35144
17-03-18 06:36:43.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:43.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:43.234 -07 000000626 INF: FPGA: Recv ZSGSRD 35139
17-03-18 06:36:43.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:43.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:43.244 -07 000000437 INF: FPGA: Recv ZSGSRD 35138
17-03-18 06:36:43.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:43.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:43.254 -07 000000606 INF: FPGA: Recv ZSGSRD 35136
17-03-18 06:36:43.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:43.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:43.264 -07 000000480 INF: FPGA: Recv ZSGSRD 35146
17-03-18 06:36:43.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:43.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:43.274 -07 000000590 INF: FPGA: Recv ZSGSRD 35141
17-03-18 06:36:43.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:43.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:43.284 -07 000000480 INF: FPGA: Recv ZSGSRD 35139
17-03-18 06:36:43.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:43.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:43.294 -07 000000590 INF: FPGA: Recv ZSGSRD 35140
17-03-18 06:36:43.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:43.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:43.304 -07 000000480 INF: FPGA: Recv ZSGSRD 35138
17-03-18 06:36:43.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:43.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:43.314 -07 000000437 INF: FPGA: Recv ZSGSRD 35149
17-03-18 06:36:43.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:43.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:43.324 -07 000000480 INF: FPGA: Recv ZPIEZORD 30843
17-03-18 06:36:43.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:43.334 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.535 V. Piezo Error = -9.5 V.
17-03-18 06:36:43.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35141 (-165.2 uncal um), Error = 0.8 uncal um, Median = 35140 (-165.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35136 (-165.2 uncal um), Max = 35149 (-165.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:36:43.334 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35141, posNoise = 8, negNoise = 5
17-03-18 06:36:43.334 -07 000000610 INF: Z Motor: After move to -0.166056, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:43.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:36:43.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:43.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:43.334 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:43.334 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:43.334 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:36:43.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:43.334 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:36:43.334 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:36:43.334 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:43.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:36:43.334 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:36:43.334 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:36:43.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:43.334 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:36:43.344 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:36:43.344 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:36:43.344 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:36:43.344 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:36:43.354 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:36:43.354 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:36:43.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36451 150\n [Camera]
17-03-18 06:36:43.554 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:36:44.014 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:36:44.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:36:44.014 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:44.014 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:36:44.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:36:44.014 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:44.024 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:44.024 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:36:44.024 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:44.024 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:36:44.154 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.000345,
17-03-18 06:36:44.204 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36451 848
17-03-18 06:36:44.354 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:36:44.414 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:36:44.414 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:36:44.414 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:44.424 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:44.424 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:36:44.424 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:36:44.424 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:36:44.424 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:44.424 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:44.434 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:36:44.584 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:36:44.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:36:44.584 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:44.584 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:36:44.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:36:44.594 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:44.594 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:44.594 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:36:44.594 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:44.594 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 06:36:44.774 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:36:44.774 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:36:44.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36451 150' command took 2 ms to send, 1413 ms to get response, and 1421 ms overall
17-03-18 06:36:44.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:36:44.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166076590884757. ------
17-03-18 06:36:44.774 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:44.774 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17199 mm
17-03-18 06:36:44.774 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:36:44.784 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:36:44.784 -07 000000447 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 06:36:44.784 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:44.784 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 37571, sync = True, waitForSettling = False)
17-03-18 06:36:44.784 -07 000000437 INF: Z Motor: Moving to -0.171989 mm, started at -0.166077 mm, distance = -5.91 um
17-03-18 06:36:44.784 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:44.784 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:36:44.784 -07 000000561 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:36:44.794 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:44.794 -07 000000447 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:44.794 -07 000000447 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:36:44.794 -07 000000447 INF: Y Motor: Moving 1356 steps-36
17-03-18 06:36:44.794 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:36:44.804 -07 000000437 INF: FPGA: Xmit ZDACW 37571\n [Z Motor]
17-03-18 06:36:44.804 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:36:44.814 -07 000000437 INF: FPGA: 'ZDACW 37571' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:36:44.814 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:36:44.934 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:44.934 -07 000000438 INF: FPGA: Recv ZDACR 37571
17-03-18 06:36:44.944 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 129 ms overall
17-03-18 06:36:44.944 -07 000000437 INF: Z Motor: MoveAbsStepped took 158 ms (did NOT wait for settling yet))
17-03-18 06:36:44.994 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:36:44.994 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:36:44.994 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:44.994 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:36:44.994 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 06:36:44.994 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:44.994 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:36:44.994 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:36:44.994 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:36:44.994 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:44.994 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:45.004 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:36:45.304 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:36:45.304 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 118 ms to send, 376 ms to get response, and 515 ms overall
17-03-18 06:36:45.344 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:45.354 -07 000000626 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:36:45.354 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:36:45.354 -07 000000447 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:45.354 -07 000000447 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:36:45.354 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 515 ms, distance = 0.848 mm, average velocity = 1.646 mm/sec
17-03-18 06:36:46.304 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:46.304 -07 000000501 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:36:46.314 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:46.314 -07 000000447 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:46.354 -07 000000447 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:36:46.354 -07 000000447 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:36:46.354 -07 000000447 INF: Y Motor: Moved to 74.0068 after 1575 ms (table move)
17-03-18 06:36:46.364 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171989 mm (DAC = 37571)
17-03-18 06:36:46.364 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:46.364 -07 000000480 INF: FPGA: Recv ZSGSRD 36058
17-03-18 06:36:46.374 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:46.374 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:46.374 -07 000000447 INF: FPGA: Recv ZSGSRD 36068
17-03-18 06:36:46.384 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:46.384 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:46.384 -07 000000447 INF: FPGA: Recv ZSGSRD 36066
17-03-18 06:36:46.394 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:46.394 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:46.394 -07 000000447 INF: FPGA: Recv ZSGSRD 36061
17-03-18 06:36:46.404 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:46.404 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:46.404 -07 000000591 INF: FPGA: Recv ZSGSRD 36061
17-03-18 06:36:46.414 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:46.414 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:46.414 -07 000000591 INF: FPGA: Recv ZSGSRD 36060
17-03-18 06:36:46.424 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:46.424 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:46.424 -07 000000591 INF: FPGA: Recv ZSGSRD 36065
17-03-18 06:36:46.434 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:46.434 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:46.434 -07 000000591 INF: FPGA: Recv ZSGSRD 36063
17-03-18 06:36:46.444 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:46.444 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:46.444 -07 000000591 INF: FPGA: Recv ZSGSRD 36065
17-03-18 06:36:46.454 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:46.454 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:46.454 -07 000000591 INF: FPGA: Recv ZSGSRD 36065
17-03-18 06:36:46.464 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:46.464 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:46.464 -07 000000591 INF: FPGA: Recv ZPIEZORD 32089
17-03-18 06:36:46.474 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:46.474 -07 000000455 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.8 V.
17-03-18 06:36:46.474 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36063 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36064 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36058 (-171.1 uncal um), Max = 36068 (-171.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:36:46.474 -07 000000455 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36063, posNoise = 5, negNoise = 5
17-03-18 06:36:46.474 -07 000000455 INF: Z Motor: After move to -0.171989, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:46.474 -07 000000455 INF: Z Motor: Settle wait time = 1579 ms, measure time = 110 ms (allowed 150 ms), total time = 1689 ms
17-03-18 06:36:46.474 -07 000000455 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 06:36:46.514 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1731 ms
17-03-18 06:36:46.514 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:36:46.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:46.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:46.514 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:46.514 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:46.514 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:36:46.514 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:46.514 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:36:46.514 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:36:46.514 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:46.514 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:36:46.524 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:36:46.524 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:36:46.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:36:46.574 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:36:46.874 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:36:46.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:36:46.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:36:46.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:36:46.874 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:36:46.914 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:36:46.914 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 06:36:46.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 06:36:46.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:36:46.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:46.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:36:46.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:36:46.994 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:36:47.014 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:47.014 -07 000000591 INF: Autofocus start
17-03-18 06:36:47.014 -07 000000591 INF: MeasureProfile start
17-03-18 06:36:47.014 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:47.024 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:36:47.024 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:36:47.024 -07 000000591 INF: MeasureProfile done
17-03-18 06:36:47.024 -07 000000591 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:36:47.024 -07 000000591 INF: Autofocus finished
17-03-18 06:36:47.224 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:36:47.224 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 06:36:47.224 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.17199971447946. ----------
17-03-18 06:36:47.234 -07 000000610 INF: Cycle	151	Tile	18	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:36:47.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36086, sync = True, waitForSettling = True)
17-03-18 06:36:47.234 -07 000000610 INF: Z Motor: Moving to -0.165191 mm, started at -0.172000 mm, distance = 6.81 um
17-03-18 06:36:47.234 -07 000000610 INF: FPGA: Xmit ZDACW 36086\n [Z Motor]
17-03-18 06:36:47.234 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:36:47.244 -07 000000610 INF: FPGA: 'ZDACW 36086' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:36:47.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:47.244 -07 000000455 INF: FPGA: Recv ZDACR 36086
17-03-18 06:36:47.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:47.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:36:47.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:47.404 -07 000000626 INF: FPGA: Recv ZSGSRD 35003
17-03-18 06:36:47.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:47.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:47.414 -07 000000501 INF: FPGA: Recv ZSGSRD 35008
17-03-18 06:36:47.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:47.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:47.424 -07 000000561 INF: FPGA: Recv ZSGSRD 35005
17-03-18 06:36:47.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:47.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:47.434 -07 000000606 INF: FPGA: Recv ZSGSRD 35011
17-03-18 06:36:47.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:47.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:47.444 -07 000000561 INF: FPGA: Recv ZSGSRD 35006
17-03-18 06:36:47.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:47.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:47.454 -07 000000455 INF: FPGA: Recv ZSGSRD 35005
17-03-18 06:36:47.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:47.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:47.464 -07 000000626 INF: FPGA: Recv ZSGSRD 35002
17-03-18 06:36:47.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:47.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:47.474 -07 000000561 INF: FPGA: Recv ZSGSRD 35003
17-03-18 06:36:47.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:47.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:47.484 -07 000000501 INF: FPGA: Recv ZSGSRD 35003
17-03-18 06:36:47.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:47.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:47.494 -07 000000606 INF: FPGA: Recv ZSGSRD 35008
17-03-18 06:36:47.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:47.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:47.504 -07 000000501 INF: FPGA: Recv ZPIEZORD 30701
17-03-18 06:36:47.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:47.514 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.506 V. Piezo Error = -9.5 V.
17-03-18 06:36:47.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35005 (-164.3 uncal um), Error = 0.9 uncal um, Median = 35005 (-164.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35002 (-164.3 uncal um), Max = 35011 (-164.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:36:47.514 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35005, posNoise = 6, negNoise = 3
17-03-18 06:36:47.514 -07 000000610 INF: Z Motor: After move to -0.165191, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:47.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:36:47.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:47.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:47.514 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:47.514 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:47.514 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:36:47.514 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:36:47.514 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:36:47.514 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:47.514 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:36:47.514 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:36:47.514 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:47.514 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:36:47.524 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:36:47.524 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:36:47.524 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:36:47.524 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:36:47.534 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:36:47.534 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:36:47.534 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:36:47.534 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:36:47.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36263 150\n [Camera]
17-03-18 06:36:47.734 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:36:48.204 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:36:48.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:36:48.204 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:48.204 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:36:48.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:36:48.204 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:48.204 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:48.204 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:36:48.204 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:48.204 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:36:48.394 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36263 848
17-03-18 06:36:48.544 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:36:48.594 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:36:48.594 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:36:48.594 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:48.594 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 06:36:48.594 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:36:48.594 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:48.604 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:48.604 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:36:48.604 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:48.614 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:36:48.764 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:36:48.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:36:48.764 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:48.764 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:36:48.764 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:48.764 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-18 06:36:48.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:36:48.774 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:48.774 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:48.774 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:36:48.954 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-18 06:36:48.954 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:36:48.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36263 150' command took 2 ms to send, 1408 ms to get response, and 1421 ms overall
17-03-18 06:36:48.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:36:48.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165202898033477. ------
17-03-18 06:36:48.964 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:48.964 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17152 mm
17-03-18 06:36:48.964 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:36:48.964 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:48.964 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:36:48.964 -07 000000591 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 06:36:48.974 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:36:48.974 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37468, sync = True, waitForSettling = False)
17-03-18 06:36:48.974 -07 000000606 INF: Z Motor: Moving to -0.171518 mm, started at -0.165203 mm, distance = -6.31 um
17-03-18 06:36:48.974 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:36:48.984 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:48.984 -07 000000501 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:36:48.994 -07 000000606 INF: FPGA: Xmit ZDACW 37468\n [Z Motor]
17-03-18 06:36:48.994 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:36:48.994 -07 000000591 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:48.994 -07 000000591 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:36:48.994 -07 000000591 INF: Y Motor: Moving 1353 steps-32
17-03-18 06:36:48.994 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:36:49.004 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:36:49.004 -07 000000606 INF: FPGA: 'ZDACW 37468' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:36:49.014 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:49.014 -07 000000480 INF: FPGA: Recv ZDACR 37468
17-03-18 06:36:49.024 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:36:49.024 -07 000000606 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 06:36:49.174 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:36:49.174 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:36:49.174 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:49.174 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:36:49.174 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:36:49.174 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:49.174 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:36:49.174 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 06:36:49.174 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:36:49.174 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:36:49.174 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:49.184 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:36:49.374 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:36:49.374 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 06:36:49.414 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:49.414 -07 000000455 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:36:49.424 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:49.424 -07 000000591 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:49.424 -07 000000591 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 06:36:49.424 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.185 mm/sec
17-03-18 06:36:49.524 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.004458,
17-03-18 06:36:50.374 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:50.374 -07 000000447 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:36:50.384 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:50.384 -07 000000591 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:50.404 -07 000000591 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:36:50.404 -07 000000591 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:36:50.404 -07 000000591 INF: Y Motor: Moved to 74.8306 after 1431 ms (table move)
17-03-18 06:36:50.404 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171518 mm (DAC = 37468)
17-03-18 06:36:50.404 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:50.404 -07 000000501 INF: FPGA: Recv ZSGSRD 35995
17-03-18 06:36:50.414 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:36:50.414 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:50.414 -07 000000591 INF: FPGA: Recv ZSGSRD 35985
17-03-18 06:36:50.424 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:50.424 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:50.424 -07 000000561 INF: FPGA: Recv ZSGSRD 35981
17-03-18 06:36:50.434 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:50.434 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:50.434 -07 000000606 INF: FPGA: Recv ZSGSRD 35985
17-03-18 06:36:50.444 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:50.444 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:50.444 -07 000000447 INF: FPGA: Recv ZSGSRD 35995
17-03-18 06:36:50.454 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:50.454 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:50.454 -07 000000561 INF: FPGA: Recv ZSGSRD 35993
17-03-18 06:36:50.464 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:50.464 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:50.464 -07 000000606 INF: FPGA: Recv ZSGSRD 35994
17-03-18 06:36:50.474 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:50.474 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:50.474 -07 000000561 INF: FPGA: Recv ZSGSRD 35989
17-03-18 06:36:50.484 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:50.484 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:50.484 -07 000000461 INF: FPGA: Recv ZSGSRD 35986
17-03-18 06:36:50.494 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:50.494 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:50.494 -07 000000455 INF: FPGA: Recv ZSGSRD 35991
17-03-18 06:36:50.504 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:50.504 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:50.504 -07 000000447 INF: FPGA: Recv ZPIEZORD 31958
17-03-18 06:36:50.514 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:50.514 -07 000000608 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -8.9 V.
17-03-18 06:36:50.514 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35989 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35990 (-170.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35981 (-170.6 uncal um), Max = 35995 (-170.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:36:50.514 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35989, posNoise = 6, negNoise = 8
17-03-18 06:36:50.514 -07 000000608 INF: Z Motor: After move to -0.171518, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:50.514 -07 000000608 INF: Z Motor: Settle wait time = 1435 ms, measure time = 105 ms (allowed 150 ms), total time = 1540 ms
17-03-18 06:36:50.514 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:36:50.564 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 06:36:50.564 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:36:50.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:50.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:50.564 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:50.564 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:50.564 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:36:50.564 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:50.564 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:36:50.564 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:36:50.574 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:50.574 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:36:50.584 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:36:50.584 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:36:50.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:36:50.634 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:36:50.934 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:36:50.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:36:50.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:36:50.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 597333880, 0x0, 559484976) start.
17-03-18 06:36:50.974 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:36:50.974 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 06:36:50.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:36:51.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 597333880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:36:51.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:51.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:36:51.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:36:51.074 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:51.074 -07 000000455 INF: Autofocus start
17-03-18 06:36:51.074 -07 000000455 INF: MeasureProfile start
17-03-18 06:36:51.074 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:51.084 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:36:51.084 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:36:51.084 -07 000000455 INF: MeasureProfile done
17-03-18 06:36:51.084 -07 000000455 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:36:51.084 -07 000000455 INF: Autofocus finished
17-03-18 06:36:51.284 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:36:51.284 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:36:51.284 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.17152432278097. ----------
17-03-18 06:36:51.284 -07 000000610 INF: Cycle	151	Tile	19	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:36:51.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35965, sync = True, waitForSettling = True)
17-03-18 06:36:51.294 -07 000000610 INF: Z Motor: Moving to -0.164637 mm, started at -0.171524 mm, distance = 6.89 um
17-03-18 06:36:51.294 -07 000000610 INF: FPGA: Xmit ZDACW 35965\n [Z Motor]
17-03-18 06:36:51.294 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:36:51.304 -07 000000610 INF: FPGA: 'ZDACW 35965' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:36:51.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:51.304 -07 000000480 INF: FPGA: Recv ZDACR 35965
17-03-18 06:36:51.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:51.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:36:51.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:51.464 -07 000000512 INF: FPGA: Recv ZSGSRD 34920
17-03-18 06:36:51.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:51.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:51.474 -07 000000447 INF: FPGA: Recv ZSGSRD 34918
17-03-18 06:36:51.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:51.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:51.484 -07 000000461 INF: FPGA: Recv ZSGSRD 34916
17-03-18 06:36:51.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:51.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:51.494 -07 000000590 INF: FPGA: Recv ZSGSRD 34923
17-03-18 06:36:51.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:51.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:51.504 -07 000000512 INF: FPGA: Recv ZSGSRD 34915
17-03-18 06:36:51.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:51.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:51.514 -07 000000591 INF: FPGA: Recv ZSGSRD 34916
17-03-18 06:36:51.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:51.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:51.524 -07 000000480 INF: FPGA: Recv ZSGSRD 34911
17-03-18 06:36:51.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:51.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:51.534 -07 000000561 INF: FPGA: Recv ZSGSRD 34917
17-03-18 06:36:51.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:51.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:51.544 -07 000000501 INF: FPGA: Recv ZSGSRD 34920
17-03-18 06:36:51.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:51.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:51.554 -07 000000591 INF: FPGA: Recv ZSGSRD 34917
17-03-18 06:36:51.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:51.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:51.564 -07 000000501 INF: FPGA: Recv ZPIEZORD 30569
17-03-18 06:36:51.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:51.574 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.488 V. Piezo Error = -9.6 V.
17-03-18 06:36:51.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.6 um, Read 10 ADC samples: Avg = 34917 (-163.8 uncal um), Error = 0.9 uncal um, Median = 34917 (-163.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34911 (-163.7 uncal um), Max = 34923 (-163.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:36:51.574 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34917, posNoise = 6, negNoise = 6
17-03-18 06:36:51.574 -07 000000610 INF: Z Motor: After move to -0.164637, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:51.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:36:51.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:51.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:51.574 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:36:51.574 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:51.574 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:51.574 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:36:51.574 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:36:51.574 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:36:51.574 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:36:51.574 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:51.574 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:36:51.574 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:36:51.574 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:51.574 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:36:51.584 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:36:51.584 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:36:51.594 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:36:51.594 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:36:51.594 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:36:51.594 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:36:51.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36142 150\n [Camera]
17-03-18 06:36:51.804 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 06:36:51.874 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:36:51.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:36:52.264 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:36:52.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:36:52.264 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:36:52.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:36:52.264 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:52.264 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:52.264 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:36:52.264 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:52.264 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:52.264 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:36:52.454 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36142 848
17-03-18 06:36:52.604 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:36:52.644 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:36:52.644 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:36:52.644 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:52.644 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:36:52.644 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:36:52.644 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:52.654 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:52.654 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:36:52.654 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:36:52.654 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:36:52.824 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:36:52.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:36:52.834 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:36:52.834 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:36:52.834 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:36:52.834 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:36:52.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:36:52.834 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:36:52.834 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:36:52.834 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:36:53.024 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:36:53.024 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:36:53.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36142 150' command took 3 ms to send, 1411 ms to get response, and 1421 ms overall
17-03-18 06:36:53.234 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:36:53.234 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:36:53.234 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:53.234 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:36:53.234 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:36:53.234 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:53.244 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:36:53.244 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:36:53.244 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:36:53.244 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:36:53.244 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:36:53.284 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:36:53.284 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:36:53.324 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:36:53.454 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 06:36:53.454 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:36:53.454 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-18 06:36:53.464 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:36:53.464 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 06:36:53.964 -07 000000561 INF: FPGA: Recv EMIN
17-03-18 06:36:53.964 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:36:53.964 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 06:36:53.964 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-18 06:36:53.974 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:36:53.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:36:53.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164637567365002. ------
17-03-18 06:36:53.974 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:53.974 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13923 mm
17-03-18 06:36:53.974 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:36:53.974 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:36:53.974 -07 000000501 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 06:36:53.974 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:53.974 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30414, sync = True, waitForSettling = False)
17-03-18 06:36:53.974 -07 000000626 INF: Z Motor: Moving to -0.139226 mm, started at -0.164638 mm, distance = 25.41 um
17-03-18 06:36:53.984 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:36:53.984 -07 000000626 INF: FPGA: Xmit ZDACW 30414\n [Z Motor]
17-03-18 06:36:53.984 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:36:53.994 -07 000000626 INF: FPGA: 'ZDACW 30414' command took 2 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:53.994 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:53.994 -07 000000447 INF: FPGA: Recv ZDACR 30414
17-03-18 06:36:54.004 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:54.004 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:54.004 -07 000000626 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 06:36:54.004 -07 000000626 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:36:54.014 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:36:54.014 -07 000000501 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:54.014 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:36:54.014 -07 000000501 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 06:36:54.014 -07 000000501 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:36:54.024 -07 000000501 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:36:54.214 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:36:54.214 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 06:36:54.894 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.011254,
17-03-18 06:36:55.654 -07 000000447 INF: FPGA: Recv YMVTO 122701 23904
17-03-18 06:36:55.654 -07 000000501 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1622 ms to get response, and 1638 ms overall
17-03-18 06:36:55.654 -07 000000501 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:36:55.654 -07 000000501 INF: Y Motor: To move from 74.831 to 59.913 (-14.918 mm) should take 23870 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 06:36:55.654 -07 000000501 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1638 ms, distance = 14.918 mm, average velocity = 9.107 mm/sec
17-03-18 06:36:56.874 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:36:56.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:36:58.504 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:36:58.504 -07 000000561 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:36:58.514 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:58.514 -07 000000501 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:36:58.554 -07 000000501 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:36:58.554 -07 000000501 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 06:36:58.554 -07 000000501 INF: Y Motor: Moved to 59.9097 after 4573 ms
17-03-18 06:36:58.554 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139226 mm (DAC = 30414)
17-03-18 06:36:58.554 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:58.554 -07 000000561 INF: FPGA: Recv ZSGSRD 30970
17-03-18 06:36:58.564 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:36:58.564 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:58.564 -07 000000569 INF: FPGA: Recv ZSGSRD 30960
17-03-18 06:36:58.574 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:58.574 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:58.574 -07 000000438 INF: FPGA: Recv ZSGSRD 30964
17-03-18 06:36:58.584 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:58.584 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:58.584 -07 000000447 INF: FPGA: Recv ZSGSRD 30965
17-03-18 06:36:58.594 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:58.594 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:58.594 -07 000000501 INF: FPGA: Recv ZSGSRD 30962
17-03-18 06:36:58.604 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:58.604 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:58.604 -07 000000438 INF: FPGA: Recv ZSGSRD 30964
17-03-18 06:36:58.614 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:58.614 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:58.614 -07 000000447 INF: FPGA: Recv ZSGSRD 30962
17-03-18 06:36:58.624 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:58.624 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:58.624 -07 000000438 INF: FPGA: Recv ZSGSRD 30962
17-03-18 06:36:58.634 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:58.634 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:58.634 -07 000000569 INF: FPGA: Recv ZSGSRD 30965
17-03-18 06:36:58.644 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:58.644 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:58.644 -07 000000438 INF: FPGA: Recv ZSGSRD 30963
17-03-18 06:36:58.654 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:58.654 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:58.654 -07 000000569 INF: FPGA: Recv ZPIEZORD 26407
17-03-18 06:36:58.664 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:58.664 -07 000000591 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.641 V. Piezo Error = -10.0 V.
17-03-18 06:36:58.664 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30964 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30964 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30960 (-138.4 uncal um), Max = 30970 (-138.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:36:58.664 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30964, posNoise = 6, negNoise = 4
17-03-18 06:36:58.664 -07 000000591 INF: Z Motor: After move to -0.139226, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:58.664 -07 000000591 INF: Z Motor: Settle wait time = 4576 ms, measure time = 104 ms (allowed 150 ms), total time = 4680 ms
17-03-18 06:36:58.664 -07 000000591 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:36:58.714 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4733 ms
17-03-18 06:36:58.714 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:36:58.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:58.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:58.714 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:58.714 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:58.714 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:36:58.714 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:58.714 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:36:58.714 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:36:58.744 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-18 06:36:58.744 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:36:58.744 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:36:58.744 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:36:58.764 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:36:58.764 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-18 06:36:58.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:36:58.804 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:36:59.104 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:36:59.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:36:59.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:36:59.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:36:59.144 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:36:59.144 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 06:36:59.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:36:59.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:36:59.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:36:59.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:36:59.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:36:59.244 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:36:59.244 -07 000000561 INF: Image SNR check: start
17-03-18 06:36:59.244 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:36:59.254 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:36:59.254 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:36:59.254 -07 000000561 INF: Image SNR check: pass  [peak (Max-Min)=116.02]
17-03-18 06:36:59.254 -07 000000561 INF: Autofocus start
17-03-18 06:36:59.254 -07 000000561 INF: MeasureProfile start
17-03-18 06:36:59.264 -07 000000561 INF: MeasureProfile done
17-03-18 06:36:59.264 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:36:59.274 -07 000000561 INF: Autofocus finished
17-03-18 06:36:59.454 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:36:59.454 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:36:59.454 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.139242656768621. ----------
17-03-18 06:36:59.454 -07 000000610 INF: Cycle	151	Tile	1	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:36:59.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28938, sync = True, waitForSettling = True)
17-03-18 06:36:59.464 -07 000000610 INF: Z Motor: Moving to -0.132470 mm, started at -0.139243 mm, distance = 6.77 um
17-03-18 06:36:59.464 -07 000000610 INF: FPGA: Xmit ZDACW 28938\n [Z Motor]
17-03-18 06:36:59.464 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:36:59.474 -07 000000610 INF: FPGA: 'ZDACW 28938' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:59.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:36:59.474 -07 000000626 INF: FPGA: Recv ZDACR 28938
17-03-18 06:36:59.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:59.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:36:59.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:59.634 -07 000000438 INF: FPGA: Recv ZSGSRD 29912
17-03-18 06:36:59.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:36:59.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:59.644 -07 000000501 INF: FPGA: Recv ZSGSRD 29908
17-03-18 06:36:59.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:59.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:59.654 -07 000000591 INF: FPGA: Recv ZSGSRD 29908
17-03-18 06:36:59.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:59.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:59.664 -07 000000569 INF: FPGA: Recv ZSGSRD 29912
17-03-18 06:36:59.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:59.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:59.674 -07 000000626 INF: FPGA: Recv ZSGSRD 29909
17-03-18 06:36:59.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:59.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:59.684 -07 000000501 INF: FPGA: Recv ZSGSRD 29913
17-03-18 06:36:59.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:36:59.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:59.694 -07 000000447 INF: FPGA: Recv ZSGSRD 29907
17-03-18 06:36:59.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:59.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:59.704 -07 000000626 INF: FPGA: Recv ZSGSRD 29913
17-03-18 06:36:59.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:59.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:59.714 -07 000000591 INF: FPGA: Recv ZSGSRD 29911
17-03-18 06:36:59.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:59.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:36:59.724 -07 000000569 INF: FPGA: Recv ZSGSRD 29911
17-03-18 06:36:59.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:59.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:36:59.734 -07 000000447 INF: FPGA: Recv ZPIEZORD 25314
17-03-18 06:36:59.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:36:59.744 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -10.1 V.
17-03-18 06:36:59.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29910 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29911 (-131.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29907 (-131.7 uncal um), Max = 29913 (-131.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:36:59.744 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29910, posNoise = 3, negNoise = 3
17-03-18 06:36:59.744 -07 000000610 INF: Z Motor: After move to -0.132470, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:36:59.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:36:59.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:36:59.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:36:59.744 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:36:59.744 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:36:59.744 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:36:59.744 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:36:59.744 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:36:59.744 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:36:59.754 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 06:36:59.754 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:36:59.754 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 06:36:59.754 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:36:59.754 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:36:59.754 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:36:59.764 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:36:59.764 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:36:59.774 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 06:36:59.774 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:36:59.774 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:36:59.774 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:36:59.784 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:36:59.784 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 35 ms.
17-03-18 06:36:59.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 29115 150\n [Camera]
17-03-18 06:36:59.984 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:37:00.264 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.012614,
17-03-18 06:37:00.444 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:37:00.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:37:00.444 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:00.454 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:37:00.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:37:00.454 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:00.454 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:00.454 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:37:00.454 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:00.454 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:37:00.644 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29115 848
17-03-18 06:37:00.794 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:37:00.824 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 06:37:00.824 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 06:37:00.824 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:00.834 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:00.834 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:37:00.834 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:37:00.834 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:00.834 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:37:00.834 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:00.844 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:37:01.014 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:37:01.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:37:01.014 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:01.014 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:37:01.024 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:01.024 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:37:01.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:37:01.024 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:01.024 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:01.024 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:37:01.204 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:37:01.204 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:37:01.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 29115 150' command took 2 ms to send, 1416 ms to get response, and 1420 ms overall
17-03-18 06:37:01.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:37:01.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.132471537171205. ------
17-03-18 06:37:01.214 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13884 mm
17-03-18 06:37:01.214 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:37:01.214 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:01.214 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:37:01.214 -07 000000480 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 06:37:01.214 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30330, sync = True, waitForSettling = False)
17-03-18 06:37:01.214 -07 000000438 INF: Z Motor: Moving to -0.138842 mm, started at -0.132472 mm, distance = -6.37 um
17-03-18 06:37:01.224 -07 000000438 INF: FPGA: Xmit ZDACW 30330\n [Z Motor]
17-03-18 06:37:01.234 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:01.424 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:37:01.424 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:37:01.424 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:01.424 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:37:01.424 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:37:01.424 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:01.434 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:01.434 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 06:37:01.434 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:01.554 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-18 06:37:01.554 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:01.554 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 06:37:01.554 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 337 ms to get response, and 345 ms overall
17-03-18 06:37:01.554 -07 000000438 INF: FPGA: 'ZDACW 30330' command took 0 ms to send, 327 ms to get response, and 342 ms overall
17-03-18 06:37:01.554 -07 000000569 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:37:01.554 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 318 ms to get response, and 343 ms overall
17-03-18 06:37:01.554 -07 000000480 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:01.554 -07 000000480 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:37:01.554 -07 000000480 INF: Y Motor: Moving 1333 steps0
17-03-18 06:37:01.554 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:01.564 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:37:01.564 -07 000000569 INF: FPGA: Recv ZDACR 30330
17-03-18 06:37:01.564 -07 000000438 INF: FPGA: 'ZDACR' command took 1 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:37:01.564 -07 000000438 INF: Z Motor: MoveAbsStepped took 347 ms (did NOT wait for settling yet))
17-03-18 06:37:01.574 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:37:01.774 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:37:01.774 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 214 ms overall
17-03-18 06:37:01.874 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:37:01.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:37:01.934 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 06:37:01.934 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-18 06:37:01.984 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:01.984 -07 000000512 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:37:01.994 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:01.994 -07 000000480 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:01.994 -07 000000480 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:37:01.994 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.833 mm, average velocity = 2.198 mm/sec
17-03-18 06:37:02.944 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:02.944 -07 000000438 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:37:02.954 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:02.954 -07 000000480 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:02.984 -07 000000480 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:37:02.984 -07 000000480 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:37:02.984 -07 000000480 INF: Y Motor: Moved to 60.7319 after 1770 ms (table move)
17-03-18 06:37:02.984 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138842 mm (DAC = 30330)
17-03-18 06:37:02.984 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:02.994 -07 000000501 INF: FPGA: Recv ZSGSRD 30900
17-03-18 06:37:02.994 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:37:02.994 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:02.994 -07 000000512 INF: FPGA: Recv ZSGSRD 30907
17-03-18 06:37:03.004 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:37:03.004 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:03.004 -07 000000480 INF: FPGA: Recv ZSGSRD 30892
17-03-18 06:37:03.014 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:03.014 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:03.014 -07 000000590 INF: FPGA: Recv ZSGSRD 30900
17-03-18 06:37:03.024 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:03.024 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:03.024 -07 000000480 INF: FPGA: Recv ZSGSRD 30904
17-03-18 06:37:03.034 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:03.034 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:03.034 -07 000000590 INF: FPGA: Recv ZSGSRD 30899
17-03-18 06:37:03.044 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:03.044 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:03.044 -07 000000480 INF: FPGA: Recv ZSGSRD 30905
17-03-18 06:37:03.054 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:37:03.054 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:03.054 -07 000000438 INF: FPGA: Recv ZSGSRD 30905
17-03-18 06:37:03.064 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:37:03.064 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:03.064 -07 000000480 INF: FPGA: Recv ZSGSRD 30905
17-03-18 06:37:03.074 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:03.074 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:03.074 -07 000000512 INF: FPGA: Recv ZSGSRD 30903
17-03-18 06:37:03.084 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:03.084 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:03.084 -07 000000480 INF: FPGA: Recv ZPIEZORD 26637
17-03-18 06:37:03.094 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:03.094 -07 000000626 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.628 V. Piezo Error = -9.4 V.
17-03-18 06:37:03.094 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30902 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30904 (-138.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30892 (-138.0 uncal um), Max = 30907 (-138.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:37:03.094 -07 000000626 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30902, posNoise = 5, negNoise = 10
17-03-18 06:37:03.094 -07 000000626 INF: Z Motor: After move to -0.138842, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:03.094 -07 000000626 INF: Z Motor: Settle wait time = 1773 ms, measure time = 102 ms (allowed 150 ms), total time = 1875 ms
17-03-18 06:37:03.094 -07 000000626 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:37:03.144 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1927 ms
17-03-18 06:37:03.144 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:37:03.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:03.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:03.144 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:03.144 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:03.144 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:37:03.144 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:03.144 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:03.144 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:37:03.144 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:37:03.144 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:37:03.164 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:37:03.164 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:37:03.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:37:03.214 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:37:03.504 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:37:03.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:37:03.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:37:03.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:37:03.544 -07 000000438 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:37:03.544 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 06:37:03.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:37:03.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:37:03.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:03.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:37:03.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:37:03.654 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:03.654 -07 000000438 INF: Autofocus start
17-03-18 06:37:03.654 -07 000000438 INF: MeasureProfile start
17-03-18 06:37:03.654 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:03.664 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:37:03.664 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:37:03.664 -07 000000438 INF: MeasureProfile done
17-03-18 06:37:03.664 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:37:03.664 -07 000000438 INF: Autofocus finished
17-03-18 06:37:03.864 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:37:03.864 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:37:03.864 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.138844355615832. ----------
17-03-18 06:37:03.864 -07 000000610 INF: Cycle	151	Tile	2	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:37:03.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28837, sync = True, waitForSettling = True)
17-03-18 06:37:03.874 -07 000000610 INF: Z Motor: Moving to -0.132007 mm, started at -0.138844 mm, distance = 6.84 um
17-03-18 06:37:03.874 -07 000000610 INF: FPGA: Xmit ZDACW 28837\n [Z Motor]
17-03-18 06:37:03.874 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:37:03.884 -07 000000610 INF: FPGA: 'ZDACW 28837' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:37:03.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:03.884 -07 000000590 INF: FPGA: Recv ZDACR 28837
17-03-18 06:37:03.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:03.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:37:04.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:04.044 -07 000000455 INF: FPGA: Recv ZSGSRD 29837
17-03-18 06:37:04.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:04.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:04.054 -07 000000512 INF: FPGA: Recv ZSGSRD 29840
17-03-18 06:37:04.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:04.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:04.064 -07 000000480 INF: FPGA: Recv ZSGSRD 29842
17-03-18 06:37:04.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:04.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:04.074 -07 000000606 INF: FPGA: Recv ZSGSRD 29844
17-03-18 06:37:04.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:04.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:04.084 -07 000000455 INF: FPGA: Recv ZSGSRD 29837
17-03-18 06:37:04.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:04.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:04.094 -07 000000512 INF: FPGA: Recv ZSGSRD 29844
17-03-18 06:37:04.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:04.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:04.104 -07 000000438 INF: FPGA: Recv ZSGSRD 29839
17-03-18 06:37:04.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:04.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:04.114 -07 000000590 INF: FPGA: Recv ZSGSRD 29836
17-03-18 06:37:04.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:04.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:04.124 -07 000000455 INF: FPGA: Recv ZSGSRD 29837
17-03-18 06:37:04.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:04.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:04.134 -07 000000626 INF: FPGA: Recv ZSGSRD 29833
17-03-18 06:37:04.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:04.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:04.144 -07 000000461 INF: FPGA: Recv ZPIEZORD 25239
17-03-18 06:37:04.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:04.154 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.400 V. Piezo Error = -10.1 V.
17-03-18 06:37:04.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29839 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29838 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29833 (-131.2 uncal um), Max = 29844 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:37:04.154 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29839, posNoise = 5, negNoise = 6
17-03-18 06:37:04.154 -07 000000610 INF: Z Motor: After move to -0.132007, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:04.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:37:04.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:04.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:04.154 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:04.154 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:04.154 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:37:04.154 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:04.154 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:37:04.154 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:37:04.154 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:04.154 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:37:04.154 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:37:04.154 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:37:04.154 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:37:04.154 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:37:04.164 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:37:04.164 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:37:04.174 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 06:37:04.174 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:37:04.174 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:37:04.174 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:37:04.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 29014 150\n [Camera]
17-03-18 06:37:04.374 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:37:04.844 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:37:04.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:37:04.844 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:04.844 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:37:04.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:37:04.844 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:04.844 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:04.844 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:37:04.844 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:04.844 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:37:05.034 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29014 848
17-03-18 06:37:05.184 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:37:05.244 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:37:05.244 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:37:05.244 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:05.244 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:05.244 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:37:05.244 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:37:05.244 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:37:05.244 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:05.254 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:05.254 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:37:05.404 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:37:05.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:37:05.404 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:05.414 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:37:05.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:37:05.414 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:05.414 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:05.414 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:37:05.414 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:05.414 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:37:05.594 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:37:05.604 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:37:05.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 29014 150' command took 2 ms to send, 1412 ms to get response, and 1423 ms overall
17-03-18 06:37:05.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:37:05.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.13201541810914. ------
17-03-18 06:37:05.604 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:05.604 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13887 mm
17-03-18 06:37:05.604 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:37:05.604 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30336, sync = True, waitForSettling = False)
17-03-18 06:37:05.604 -07 000000382 INF: Z Motor: Moving to -0.138869 mm, started at -0.132015 mm, distance = -6.85 um
17-03-18 06:37:05.614 -07 000000382 INF: FPGA: Xmit ZDACW 30336\n [Z Motor]
17-03-18 06:37:05.614 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:37:05.614 -07 000000461 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 06:37:05.634 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:05.804 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:37:05.804 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:37:05.804 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:05.814 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:05.814 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:37:05.814 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:37:05.814 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:05.814 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:05.814 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:37:05.814 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:37:05.824 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:05.824 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:37:05.824 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 218 ms to get response, and 221 ms overall
17-03-18 06:37:05.824 -07 000000480 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:37:05.824 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 189 ms to get response, and 218 ms overall
17-03-18 06:37:05.824 -07 000000461 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:05.824 -07 000000461 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:37:05.824 -07 000000461 INF: Y Motor: Moving 1345 steps-23
17-03-18 06:37:05.824 -07 000000382 INF: FPGA: 'ZDACW 30336' command took 0 ms to send, 208 ms to get response, and 218 ms overall
17-03-18 06:37:05.824 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:37:05.834 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.990831,
17-03-18 06:37:05.854 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:05.854 -07 000000501 INF: FPGA: Recv ZDACR 30336
17-03-18 06:37:05.864 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:37:05.864 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:37:05.864 -07 000000382 INF: Z Motor: MoveAbsStepped took 250 ms (did NOT wait for settling yet))
17-03-18 06:37:06.034 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:37:06.034 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 203 ms overall
17-03-18 06:37:06.234 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:37:06.234 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 408 ms overall
17-03-18 06:37:06.294 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:06.294 -07 000000480 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:37:06.304 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:06.304 -07 000000461 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:06.304 -07 000000461 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:37:06.304 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.841 mm, average velocity = 2.060 mm/sec
17-03-18 06:37:06.874 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:37:06.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:37:07.254 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:07.254 -07 000000382 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:37:07.264 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:07.264 -07 000000461 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:07.294 -07 000000461 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:37:07.294 -07 000000461 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:37:07.294 -07 000000461 INF: Y Motor: Moved to 61.5625 after 1685 ms (table move)
17-03-18 06:37:07.294 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138869 mm (DAC = 30336)
17-03-18 06:37:07.294 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:07.304 -07 000000501 INF: FPGA: Recv ZSGSRD 30910
17-03-18 06:37:07.304 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 4 ms overall
17-03-18 06:37:07.304 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:07.304 -07 000000461 INF: FPGA: Recv ZSGSRD 30902
17-03-18 06:37:07.314 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:37:07.314 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:07.314 -07 000000480 INF: FPGA: Recv ZSGSRD 30907
17-03-18 06:37:07.324 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:07.324 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:07.324 -07 000000382 INF: FPGA: Recv ZSGSRD 30905
17-03-18 06:37:07.334 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:07.334 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:07.334 -07 000000437 INF: FPGA: Recv ZSGSRD 30902
17-03-18 06:37:07.344 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:07.344 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:07.344 -07 000000461 INF: FPGA: Recv ZSGSRD 30894
17-03-18 06:37:07.354 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:07.354 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:07.354 -07 000000437 INF: FPGA: Recv ZSGSRD 30910
17-03-18 06:37:07.364 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:07.364 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:07.364 -07 000000382 INF: FPGA: Recv ZSGSRD 30907
17-03-18 06:37:07.374 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:07.374 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:07.374 -07 000000382 INF: FPGA: Recv ZSGSRD 30910
17-03-18 06:37:07.384 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:07.384 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:07.384 -07 000000382 INF: FPGA: Recv ZSGSRD 30908
17-03-18 06:37:07.394 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:07.394 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:07.394 -07 000000501 INF: FPGA: Recv ZPIEZORD 26735
17-03-18 06:37:07.404 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:07.404 -07 000000569 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.2 V.
17-03-18 06:37:07.404 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30906 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30907 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30894 (-138.0 uncal um), Max = 30910 (-138.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 06:37:07.404 -07 000000569 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30906, posNoise = 4, negNoise = 12
17-03-18 06:37:07.404 -07 000000569 INF: Z Motor: After move to -0.138869, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:07.404 -07 000000569 INF: Z Motor: Settle wait time = 1689 ms, measure time = 101 ms (allowed 150 ms), total time = 1790 ms
17-03-18 06:37:07.404 -07 000000569 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 06:37:07.454 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1842 ms
17-03-18 06:37:07.454 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:37:07.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:07.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:07.454 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:07.454 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:37:07.454 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:07.454 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:07.454 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:07.454 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:37:07.464 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:37:07.464 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:37:07.464 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 06:37:07.474 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:37:07.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:37:07.524 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:37:07.824 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:37:07.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:37:07.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:37:07.944 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:37:07.944 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:37:07.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 462 ms to get response, and 466 ms overall
17-03-18 06:37:07.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614208944, 0x0, 559484976) start.
17-03-18 06:37:08.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614208944, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:37:08.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:08.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:37:08.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 236 ms.
17-03-18 06:37:08.144 -07 000000447 INF: Autofocus start
17-03-18 06:37:08.144 -07 000000447 INF: MeasureProfile start
17-03-18 06:37:08.144 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:08.144 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:08.154 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:37:08.154 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:37:08.164 -07 000000447 INF: MeasureProfile done
17-03-18 06:37:08.164 -07 000000447 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:37:08.164 -07 000000447 INF: Autofocus finished
17-03-18 06:37:08.354 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:37:08.354 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 06:37:08.364 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.138870052464399. ----------
17-03-18 06:37:08.364 -07 000000610 INF: Cycle	151	Tile	3	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:37:08.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28860, sync = True, waitForSettling = True)
17-03-18 06:37:08.364 -07 000000610 INF: Z Motor: Moving to -0.132113 mm, started at -0.138870 mm, distance = 6.76 um
17-03-18 06:37:08.364 -07 000000610 INF: FPGA: Xmit ZDACW 28860\n [Z Motor]
17-03-18 06:37:08.364 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:37:08.374 -07 000000610 INF: FPGA: 'ZDACW 28860' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:37:08.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:08.374 -07 000000569 INF: FPGA: Recv ZDACR 28860
17-03-18 06:37:08.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:08.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:37:08.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:08.534 -07 000000561 INF: FPGA: Recv ZSGSRD 29851
17-03-18 06:37:08.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:08.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:08.544 -07 000000438 INF: FPGA: Recv ZSGSRD 29854
17-03-18 06:37:08.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:08.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:08.554 -07 000000501 INF: FPGA: Recv ZSGSRD 29857
17-03-18 06:37:08.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:08.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:08.564 -07 000000569 INF: FPGA: Recv ZSGSRD 29852
17-03-18 06:37:08.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:08.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:08.574 -07 000000561 INF: FPGA: Recv ZSGSRD 29858
17-03-18 06:37:08.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:08.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:08.584 -07 000000438 INF: FPGA: Recv ZSGSRD 29853
17-03-18 06:37:08.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:08.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:08.594 -07 000000501 INF: FPGA: Recv ZSGSRD 29859
17-03-18 06:37:08.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:08.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:08.604 -07 000000569 INF: FPGA: Recv ZSGSRD 29852
17-03-18 06:37:08.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:08.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:08.614 -07 000000561 INF: FPGA: Recv ZSGSRD 29849
17-03-18 06:37:08.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:08.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:08.624 -07 000000480 INF: FPGA: Recv ZSGSRD 29862
17-03-18 06:37:08.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:08.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:08.634 -07 000000512 INF: FPGA: Recv ZPIEZORD 25316
17-03-18 06:37:08.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:08.644 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -10.0 V.
17-03-18 06:37:08.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29855 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29854 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29849 (-131.3 uncal um), Max = 29862 (-131.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:37:08.644 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29855, posNoise = 7, negNoise = 6
17-03-18 06:37:08.644 -07 000000610 INF: Z Motor: After move to -0.132113, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:08.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:37:08.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:08.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:08.644 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:08.644 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:37:08.644 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:08.644 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:37:08.644 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:37:08.644 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:08.644 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:37:08.644 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:37:08.644 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:37:08.644 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:37:08.644 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:37:08.654 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:37:08.654 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:37:08.654 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:37:08.664 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:37:08.664 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:37:08.664 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:37:08.664 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:37:08.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 29037 150\n [Camera]
17-03-18 06:37:08.864 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:37:09.334 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 657
17-03-18 06:37:09.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 657
17-03-18 06:37:09.334 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:09.334 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 657
17-03-18 06:37:09.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 657
17-03-18 06:37:09.334 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:09.334 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:09.334 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:37:09.334 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:09.334 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:37:09.524 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29037 848
17-03-18 06:37:09.674 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:37:09.734 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:37:09.734 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:37:09.734 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:09.744 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:09.744 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:37:09.744 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:37:09.744 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:37:09.744 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:09.744 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:09.754 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:37:09.894 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:37:09.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:37:09.894 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:09.904 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:09.904 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:37:09.904 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:37:09.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:37:09.904 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:09.904 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:09.904 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:37:10.084 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:37:10.094 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:37:10.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 29037 150' command took 3 ms to send, 1409 ms to get response, and 1421 ms overall
17-03-18 06:37:10.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:37:10.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.132118205503408. ------
17-03-18 06:37:10.094 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13854 mm
17-03-18 06:37:10.094 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:37:10.094 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:10.094 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:37:10.094 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30265, sync = True, waitForSettling = False)
17-03-18 06:37:10.094 -07 000000438 INF: Z Motor: Moving to -0.138544 mm, started at -0.132118 mm, distance = -6.43 um
17-03-18 06:37:10.094 -07 000000608 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 06:37:10.094 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:10.104 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:37:10.104 -07 000000438 INF: FPGA: Xmit ZDACW 30265\n [Z Motor]
17-03-18 06:37:10.104 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:37:10.114 -07 000000438 INF: FPGA: 'ZDACW 30265' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:10.114 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:37:10.124 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:10.124 -07 000000590 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:37:10.134 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:10.134 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:37:10.134 -07 000000608 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:10.134 -07 000000608 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:37:10.134 -07 000000608 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:37:10.134 -07 000000447 INF: FPGA: Recv ZDACR 30265
17-03-18 06:37:10.144 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:37:10.144 -07 000000438 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 06:37:10.144 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:37:10.304 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:37:10.304 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:37:10.304 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:10.304 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:37:10.304 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:37:10.304 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:10.314 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:10.314 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-18 06:37:10.314 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:37:10.314 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 217 ms overall
17-03-18 06:37:10.314 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:10.324 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-18 06:37:10.514 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 06:37:10.514 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:37:10.574 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:10.574 -07 000000461 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:37:10.584 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:37:10.584 -07 000000608 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:10.584 -07 000000608 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:37:10.584 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.171 mm/sec
17-03-18 06:37:11.224 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.993549,
17-03-18 06:37:11.534 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:11.534 -07 000000382 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:37:11.544 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:11.544 -07 000000608 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:11.574 -07 000000608 INF: Y Motor: After move to 62.402607, error = -0.008564, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:37:11.574 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:37:11.574 -07 000000608 INF: Y Motor: Moved to 62.3940 after 1475 ms (table move)
17-03-18 06:37:11.574 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138544 mm (DAC = 30265)
17-03-18 06:37:11.574 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:11.584 -07 000000480 INF: FPGA: Recv ZSGSRD 30854
17-03-18 06:37:11.584 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:37:11.584 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:11.584 -07 000000608 INF: FPGA: Recv ZSGSRD 30855
17-03-18 06:37:11.594 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:37:11.594 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:11.594 -07 000000480 INF: FPGA: Recv ZSGSRD 30840
17-03-18 06:37:11.604 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:11.604 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:11.604 -07 000000382 INF: FPGA: Recv ZSGSRD 30857
17-03-18 06:37:11.614 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:11.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:11.614 -07 000000480 INF: FPGA: Recv ZSGSRD 30859
17-03-18 06:37:11.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:11.624 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:11.624 -07 000000569 INF: FPGA: Recv ZSGSRD 30864
17-03-18 06:37:11.634 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:11.634 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:11.634 -07 000000480 INF: FPGA: Recv ZSGSRD 30861
17-03-18 06:37:11.644 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:11.644 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:11.644 -07 000000626 INF: FPGA: Recv ZSGSRD 30857
17-03-18 06:37:11.654 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:11.654 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:11.654 -07 000000608 INF: FPGA: Recv ZSGSRD 30860
17-03-18 06:37:11.664 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:11.664 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:11.664 -07 000000480 INF: FPGA: Recv ZSGSRD 30856
17-03-18 06:37:11.674 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:11.674 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:11.674 -07 000000569 INF: FPGA: Recv ZPIEZORD 26646
17-03-18 06:37:11.684 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:11.684 -07 000000561 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -9.3 V.
17-03-18 06:37:11.684 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30856 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30857 (-137.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 24 (0.2 uncal um), Min = 30840 (-137.6 uncal um), Max = 30864 (-137.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 16 (0.1 uncal um)
17-03-18 06:37:11.684 -07 000000561 INF: Z Motor: ADC noise = 16, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30856, posNoise = 8, negNoise = 16
17-03-18 06:37:11.684 -07 000000561 INF: Z Motor: After move to -0.138544, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:11.684 -07 000000561 INF: Z Motor: Settle wait time = 1480 ms, measure time = 101 ms (allowed 150 ms), total time = 1581 ms
17-03-18 06:37:11.684 -07 000000561 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 06:37:11.734 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 06:37:11.734 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:37:11.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:11.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:11.734 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:37:11.734 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:11.734 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:11.734 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:11.734 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:37:11.734 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:37:11.744 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:37:11.744 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:37:11.744 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:37:11.744 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:37:11.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:37:11.794 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:37:11.874 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:37:11.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:37:12.094 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:37:12.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:37:12.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:37:12.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 06:37:12.134 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:37:12.134 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 06:37:12.134 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:37:12.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 06:37:12.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:12.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:37:12.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 06:37:12.234 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:12.234 -07 000000480 INF: Autofocus start
17-03-18 06:37:12.234 -07 000000480 INF: MeasureProfile start
17-03-18 06:37:12.234 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:12.244 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:37:12.244 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:37:12.254 -07 000000480 INF: MeasureProfile done
17-03-18 06:37:12.254 -07 000000480 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:37:12.254 -07 000000480 INF: Autofocus finished
17-03-18 06:37:12.444 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:37:12.444 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:37:12.444 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39404296875, Z-position -0.138548841857311. ----------
17-03-18 06:37:12.454 -07 000000610 INF: Cycle	151	Tile	4	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:37:12.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28760, sync = True, waitForSettling = True)
17-03-18 06:37:12.454 -07 000000610 INF: Z Motor: Moving to -0.131655 mm, started at -0.138549 mm, distance = 6.89 um
17-03-18 06:37:12.454 -07 000000610 INF: FPGA: Xmit ZDACW 28760\n [Z Motor]
17-03-18 06:37:12.454 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:37:12.464 -07 000000610 INF: FPGA: 'ZDACW 28760' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:37:12.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:12.464 -07 000000569 INF: FPGA: Recv ZDACR 28760
17-03-18 06:37:12.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:12.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:37:12.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:12.624 -07 000000608 INF: FPGA: Recv ZSGSRD 29784
17-03-18 06:37:12.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:12.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:12.634 -07 000000382 INF: FPGA: Recv ZSGSRD 29784
17-03-18 06:37:12.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:12.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:12.644 -07 000000569 INF: FPGA: Recv ZSGSRD 29780
17-03-18 06:37:12.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:12.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:12.654 -07 000000626 INF: FPGA: Recv ZSGSRD 29783
17-03-18 06:37:12.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:12.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:12.664 -07 000000382 INF: FPGA: Recv ZSGSRD 29786
17-03-18 06:37:12.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:12.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:12.674 -07 000000608 INF: FPGA: Recv ZSGSRD 29781
17-03-18 06:37:12.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:12.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:12.684 -07 000000569 INF: FPGA: Recv ZSGSRD 29785
17-03-18 06:37:12.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:12.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:12.694 -07 000000626 INF: FPGA: Recv ZSGSRD 29781
17-03-18 06:37:12.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:12.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:12.704 -07 000000569 INF: FPGA: Recv ZSGSRD 29783
17-03-18 06:37:12.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:12.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:12.714 -07 000000626 INF: FPGA: Recv ZSGSRD 29785
17-03-18 06:37:12.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:12.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:12.724 -07 000000382 INF: FPGA: Recv ZPIEZORD 25230
17-03-18 06:37:12.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:12.734 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -10.0 V.
17-03-18 06:37:12.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29783 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29784 (-130.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29780 (-130.9 uncal um), Max = 29786 (-130.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:37:12.734 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29783, posNoise = 3, negNoise = 3
17-03-18 06:37:12.734 -07 000000610 INF: Z Motor: After move to -0.131655, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:12.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:37:12.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:12.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:12.734 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:12.734 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:37:12.734 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:37:12.734 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:12.734 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:12.734 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:37:12.744 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:12.744 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:37:12.744 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:37:12.744 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:37:12.744 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:37:12.744 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:37:12.744 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:37:12.744 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:37:12.754 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:37:12.754 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:37:12.754 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:37:12.754 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:37:12.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28936 150\n [Camera]
17-03-18 06:37:12.954 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:37:13.424 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:37:13.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:37:13.424 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:13.424 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:13.424 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:37:13.424 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:37:13.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:37:13.424 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:13.544 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:13.544 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) start.
17-03-18 06:37:13.614 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28936 848
17-03-18 06:37:13.764 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:37:13.814 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:37:13.814 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:37:13.814 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:13.814 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:13.814 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:37:13.934 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:37:13.934 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:37:13.934 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:13.944 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:13.944 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-18 06:37:13.984 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:37:13.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:37:13.984 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:13.984 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:37:13.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:37:13.994 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:13.994 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:13.994 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:37:13.994 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:13.994 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:37:14.174 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:37:14.174 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:37:14.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28936 150' command took 2 ms to send, 1408 ms to get response, and 1421 ms overall
17-03-18 06:37:14.184 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:37:14.184 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39404296875, Z-Position -0.131655662229202. ------
17-03-18 06:37:14.184 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:14.184 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13815 mm
17-03-18 06:37:14.184 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:37:14.184 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:14.184 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:37:14.184 -07 000000461 INF: Y Motor: Moving to 63.2326 mm, started at 62.3940 mm, delta = 0.8386 mm
17-03-18 06:37:14.184 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 30179, sync = True, waitForSettling = False)
17-03-18 06:37:14.184 -07 000000447 INF: Z Motor: Moving to -0.138151 mm, started at -0.131656 mm, distance = -6.49 um
17-03-18 06:37:14.194 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:37:14.194 -07 000000447 INF: FPGA: Xmit ZDACW 30179\n [Z Motor]
17-03-18 06:37:14.194 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:37:14.204 -07 000000447 INF: FPGA: 'ZDACW 30179' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:14.204 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:37:14.214 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:14.214 -07 000000437 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:37:14.224 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:37:14.224 -07 000000461 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:14.224 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:14.224 -07 000000608 INF: FPGA: Recv ZDACR 30179
17-03-18 06:37:14.224 -07 000000461 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:37:14.224 -07 000000461 INF: Y Motor: Moving 1341 steps-18
17-03-18 06:37:14.234 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:37:14.234 -07 000000447 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:37:14.234 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:37:14.394 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:37:14.394 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:37:14.394 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:14.394 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:37:14.394 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:37:14.394 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:14.394 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:14.394 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:37:14.394 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:14.404 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:37:14.404 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 214 ms overall
17-03-18 06:37:14.404 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:37:14.604 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 06:37:14.604 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 06:37:14.664 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:14.664 -07 000000437 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:37:14.674 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:14.674 -07 000000461 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:14.674 -07 000000461 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:37:14.674 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.184 mm/sec
17-03-18 06:37:15.624 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:15.624 -07 000000606 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:37:15.634 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:15.634 -07 000000461 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:15.664 -07 000000461 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:37:15.664 -07 000000461 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:37:15.664 -07 000000461 INF: Y Motor: Moved to 63.2227 after 1473 ms (table move)
17-03-18 06:37:15.664 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138151 mm (DAC = 30179)
17-03-18 06:37:15.664 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:15.664 -07 000000512 INF: FPGA: Recv ZSGSRD 30793
17-03-18 06:37:15.674 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:37:15.674 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:15.674 -07 000000608 INF: FPGA: Recv ZSGSRD 30805
17-03-18 06:37:15.684 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:15.684 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:15.684 -07 000000591 INF: FPGA: Recv ZSGSRD 30793
17-03-18 06:37:15.694 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:15.694 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:15.694 -07 000000382 INF: FPGA: Recv ZSGSRD 30785
17-03-18 06:37:15.704 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:15.704 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:15.704 -07 000000455 INF: FPGA: Recv ZSGSRD 30798
17-03-18 06:37:15.714 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:15.714 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:15.714 -07 000000447 INF: FPGA: Recv ZSGSRD 30790
17-03-18 06:37:15.724 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:15.734 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:15.734 -07 000000438 INF: FPGA: Recv ZSGSRD 30791
17-03-18 06:37:15.744 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:37:15.744 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:15.744 -07 000000608 INF: FPGA: Recv ZSGSRD 30789
17-03-18 06:37:15.754 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:15.754 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:15.754 -07 000000512 INF: FPGA: Recv ZSGSRD 30800
17-03-18 06:37:15.764 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:15.764 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:15.764 -07 000000437 INF: FPGA: Recv ZSGSRD 30797
17-03-18 06:37:15.774 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:15.774 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:15.774 -07 000000501 INF: FPGA: Recv ZPIEZORD 26586
17-03-18 06:37:15.784 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:15.784 -07 000000590 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.605 V. Piezo Error = -9.3 V.
17-03-18 06:37:15.784 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30794 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30793 (-137.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30785 (-137.3 uncal um), Max = 30805 (-137.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:37:15.784 -07 000000590 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30794, posNoise = 11, negNoise = 9
17-03-18 06:37:15.784 -07 000000590 INF: Z Motor: After move to -0.138151, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:15.784 -07 000000590 INF: Z Motor: Settle wait time = 1476 ms, measure time = 115 ms (allowed 150 ms), total time = 1591 ms
17-03-18 06:37:15.784 -07 000000590 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 06:37:15.824 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 06:37:15.824 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:37:15.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:15.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:15.824 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:15.824 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:15.824 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:37:15.824 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:15.824 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:37:15.824 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:37:15.834 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:37:15.834 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:37:15.834 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:37:15.834 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:37:15.844 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:37:15.884 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:37:16.184 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:37:16.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:37:16.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:37:16.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 06:37:16.224 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:37:16.224 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-18 06:37:16.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 06:37:16.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:37:16.304 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:16.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:37:16.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:37:16.324 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:16.324 -07 000000455 INF: Autofocus start
17-03-18 06:37:16.324 -07 000000455 INF: MeasureProfile start
17-03-18 06:37:16.324 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:16.334 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:37:16.334 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:37:16.344 -07 000000455 INF: MeasureProfile done
17-03-18 06:37:16.344 -07 000000455 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:37:16.344 -07 000000455 INF: Autofocus finished
17-03-18 06:37:16.534 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:37:16.534 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 06:37:16.534 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.138150540704522. ----------
17-03-18 06:37:16.544 -07 000000610 INF: Cycle	151	Tile	5	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:37:16.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28720, sync = True, waitForSettling = True)
17-03-18 06:37:16.544 -07 000000610 INF: Z Motor: Moving to -0.131472 mm, started at -0.138151 mm, distance = 6.68 um
17-03-18 06:37:16.544 -07 000000610 INF: FPGA: Xmit ZDACW 28720\n [Z Motor]
17-03-18 06:37:16.544 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:37:16.554 -07 000000610 INF: FPGA: 'ZDACW 28720' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:37:16.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:16.554 -07 000000569 INF: FPGA: Recv ZDACR 28720
17-03-18 06:37:16.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:16.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:37:16.584 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.988112,
17-03-18 06:37:16.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:16.714 -07 000000569 INF: FPGA: Recv ZSGSRD 29758
17-03-18 06:37:16.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:16.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:16.724 -07 000000591 INF: FPGA: Recv ZSGSRD 29753
17-03-18 06:37:16.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:16.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:16.734 -07 000000480 INF: FPGA: Recv ZSGSRD 29752
17-03-18 06:37:16.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:16.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:16.744 -07 000000591 INF: FPGA: Recv ZSGSRD 29757
17-03-18 06:37:16.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:16.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:16.754 -07 000000480 INF: FPGA: Recv ZSGSRD 29754
17-03-18 06:37:16.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:16.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:16.764 -07 000000447 INF: FPGA: Recv ZSGSRD 29754
17-03-18 06:37:16.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:16.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:16.774 -07 000000480 INF: FPGA: Recv ZSGSRD 29755
17-03-18 06:37:16.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:16.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:16.784 -07 000000569 INF: FPGA: Recv ZSGSRD 29753
17-03-18 06:37:16.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:16.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:16.794 -07 000000455 INF: FPGA: Recv ZSGSRD 29759
17-03-18 06:37:16.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:16.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:16.804 -07 000000590 INF: FPGA: Recv ZSGSRD 29751
17-03-18 06:37:16.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:16.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:16.814 -07 000000447 INF: FPGA: Recv ZPIEZORD 25225
17-03-18 06:37:16.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:16.824 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -9.9 V.
17-03-18 06:37:16.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29755 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29754 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29751 (-130.7 uncal um), Max = 29759 (-130.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:37:16.824 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29755, posNoise = 4, negNoise = 4
17-03-18 06:37:16.824 -07 000000610 INF: Z Motor: After move to -0.131472, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:16.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:37:16.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:16.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:16.824 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:16.824 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:16.824 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:37:16.824 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:16.824 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:37:16.824 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:37:16.824 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:37:16.824 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:37:16.824 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:37:16.824 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:37:16.834 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:37:16.834 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:37:16.834 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:37:16.834 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:37:16.844 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:37:16.844 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:37:16.844 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:37:16.844 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:37:16.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28897 150\n [Camera]
17-03-18 06:37:16.874 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:37:16.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:37:17.044 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:37:17.504 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 657
17-03-18 06:37:17.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 657
17-03-18 06:37:17.504 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:17.504 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:17.504 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:37:17.514 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 657
17-03-18 06:37:17.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 657
17-03-18 06:37:17.514 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:17.514 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:17.514 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:37:17.814 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28897 848
17-03-18 06:37:17.844 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:37:17.894 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:37:17.894 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:37:17.894 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:17.894 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:37:17.894 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:37:17.894 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:17.894 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:17.894 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:37:17.894 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:17.904 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:37:18.074 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:37:18.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:37:18.074 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:18.074 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:37:18.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:37:18.074 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:18.084 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:18.084 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 592928576, 0x0, 391868352) start.
17-03-18 06:37:18.084 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:18.084 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:37:18.264 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:37:18.264 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:37:18.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28897 150' command took 2 ms to send, 1414 ms to get response, and 1421 ms overall
17-03-18 06:37:18.264 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:37:18.264 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.131475784289232. ------
17-03-18 06:37:18.264 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:18.264 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13796 mm
17-03-18 06:37:18.264 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:37:18.274 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:18.274 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 4 ms overall
17-03-18 06:37:18.274 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:37:18.274 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30137, sync = True, waitForSettling = False)
17-03-18 06:37:18.274 -07 000000591 INF: Z Motor: Moving to -0.137958 mm, started at -0.131476 mm, distance = -6.48 um
17-03-18 06:37:18.274 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:37:18.274 -07 000000461 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 06:37:18.284 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:18.284 -07 000000569 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:37:18.294 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:37:18.294 -07 000000461 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:18.294 -07 000000461 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:37:18.294 -07 000000461 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:37:18.294 -07 000000591 INF: FPGA: Xmit ZDACW 30137\n [Z Motor]
17-03-18 06:37:18.294 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:37:18.304 -07 000000591 INF: FPGA: 'ZDACW 30137' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:37:18.304 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:18.304 -07 000000438 INF: FPGA: Recv ZDACR 30137
17-03-18 06:37:18.314 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:37:18.314 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:18.314 -07 000000591 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:37:18.474 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:37:18.474 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 06:37:18.474 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 592928576, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:37:18.474 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:37:18.474 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:18.484 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:37:18.484 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:37:18.484 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:18.484 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:18.484 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:37:18.484 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:18.494 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:37:18.684 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 06:37:18.684 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:37:18.744 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:18.744 -07 000000480 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:37:18.754 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:18.754 -07 000000461 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:18.754 -07 000000461 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 06:37:18.754 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 06:37:19.704 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:19.704 -07 000000480 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:37:19.714 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:19.714 -07 000000461 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:19.744 -07 000000461 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:37:19.744 -07 000000461 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:37:19.744 -07 000000461 INF: Y Motor: Moved to 64.0562 after 1465 ms (table move)
17-03-18 06:37:19.744 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137958 mm (DAC = 30137)
17-03-18 06:37:19.744 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:19.744 -07 000000608 INF: FPGA: Recv ZSGSRD 30765
17-03-18 06:37:19.754 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:37:19.754 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:19.754 -07 000000501 INF: FPGA: Recv ZSGSRD 30766
17-03-18 06:37:19.764 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:19.764 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:19.764 -07 000000608 INF: FPGA: Recv ZSGSRD 30760
17-03-18 06:37:19.774 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:19.774 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:19.774 -07 000000382 INF: FPGA: Recv ZSGSRD 30760
17-03-18 06:37:19.784 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:19.784 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:19.784 -07 000000455 INF: FPGA: Recv ZSGSRD 30763
17-03-18 06:37:19.794 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:19.794 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:19.794 -07 000000608 INF: FPGA: Recv ZSGSRD 30762
17-03-18 06:37:19.804 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:19.804 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:19.804 -07 000000447 INF: FPGA: Recv ZSGSRD 30768
17-03-18 06:37:19.814 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:19.814 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:19.814 -07 000000608 INF: FPGA: Recv ZSGSRD 30770
17-03-18 06:37:19.824 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:19.824 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:19.824 -07 000000447 INF: FPGA: Recv ZSGSRD 30765
17-03-18 06:37:19.834 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:19.834 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:19.834 -07 000000455 INF: FPGA: Recv ZSGSRD 30767
17-03-18 06:37:19.844 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:19.844 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:19.844 -07 000000480 INF: FPGA: Recv ZPIEZORD 26581
17-03-18 06:37:19.854 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:19.854 -07 000000626 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.599 V. Piezo Error = -9.2 V.
17-03-18 06:37:19.854 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30765 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30765 (-137.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30760 (-137.1 uncal um), Max = 30770 (-137.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:37:19.854 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30765, posNoise = 5, negNoise = 5
17-03-18 06:37:19.854 -07 000000626 INF: Z Motor: After move to -0.137958, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:19.854 -07 000000626 INF: Z Motor: Settle wait time = 1469 ms, measure time = 106 ms (allowed 150 ms), total time = 1575 ms
17-03-18 06:37:19.854 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:37:19.904 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 06:37:19.904 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:37:19.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:19.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:19.904 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:19.904 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:19.904 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:37:19.904 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:19.904 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:19.904 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:37:19.914 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:37:19.914 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:37:19.924 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:37:19.924 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:37:19.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:37:19.964 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:37:20.264 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:37:20.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:37:20.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:37:20.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:37:20.304 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:37:20.304 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 06:37:20.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:37:20.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:37:20.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:20.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:37:20.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:37:20.404 -07 000000447 INF: Autofocus start
17-03-18 06:37:20.404 -07 000000447 INF: MeasureProfile start
17-03-18 06:37:20.404 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:20.404 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:20.414 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:37:20.414 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:37:20.414 -07 000000447 INF: MeasureProfile done
17-03-18 06:37:20.414 -07 000000447 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:37:20.414 -07 000000447 INF: Autofocus finished
17-03-18 06:37:20.614 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:37:20.614 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 06:37:20.614 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.137964238552411. ----------
17-03-18 06:37:20.614 -07 000000610 INF: Cycle	151	Tile	6	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:37:20.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28644, sync = True, waitForSettling = True)
17-03-18 06:37:20.624 -07 000000610 INF: Z Motor: Moving to -0.131124 mm, started at -0.137964 mm, distance = 6.84 um
17-03-18 06:37:20.624 -07 000000610 INF: FPGA: Xmit ZDACW 28644\n [Z Motor]
17-03-18 06:37:20.624 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:37:20.634 -07 000000610 INF: FPGA: 'ZDACW 28644' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:37:20.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:20.634 -07 000000461 INF: FPGA: Recv ZDACR 28644
17-03-18 06:37:20.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:20.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:37:20.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:20.794 -07 000000606 INF: FPGA: Recv ZSGSRD 29701
17-03-18 06:37:20.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:20.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:20.804 -07 000000447 INF: FPGA: Recv ZSGSRD 29698
17-03-18 06:37:20.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:20.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:20.814 -07 000000608 INF: FPGA: Recv ZSGSRD 29699
17-03-18 06:37:20.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:20.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:20.824 -07 000000382 INF: FPGA: Recv ZSGSRD 29703
17-03-18 06:37:20.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:20.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:20.834 -07 000000461 INF: FPGA: Recv ZSGSRD 29697
17-03-18 06:37:20.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:20.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:20.844 -07 000000447 INF: FPGA: Recv ZSGSRD 29697
17-03-18 06:37:20.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:20.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:20.854 -07 000000590 INF: FPGA: Recv ZSGSRD 29707
17-03-18 06:37:20.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:20.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:20.864 -07 000000569 INF: FPGA: Recv ZSGSRD 29701
17-03-18 06:37:20.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:20.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:20.874 -07 000000461 INF: FPGA: Recv ZSGSRD 29701
17-03-18 06:37:20.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:20.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:20.884 -07 000000455 INF: FPGA: Recv ZSGSRD 29702
17-03-18 06:37:20.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:20.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:20.894 -07 000000608 INF: FPGA: Recv ZPIEZORD 25167
17-03-18 06:37:20.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:20.904 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.9 V.
17-03-18 06:37:20.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29701 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29701 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29697 (-130.3 uncal um), Max = 29707 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:37:20.904 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29701, posNoise = 6, negNoise = 4
17-03-18 06:37:20.904 -07 000000610 INF: Z Motor: After move to -0.131124, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:20.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:37:20.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:20.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:20.904 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:20.904 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:20.904 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:37:20.904 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:37:20.904 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:37:20.904 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:20.904 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:37:20.904 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:37:20.904 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:20.904 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:37:20.914 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:37:20.914 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:37:20.914 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:37:20.914 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:37:20.914 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:37:20.924 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:37:20.924 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:37:20.924 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:37:20.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28821 150\n [Camera]
17-03-18 06:37:21.124 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:37:21.584 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:37:21.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:37:21.584 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:21.584 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:37:21.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:37:21.584 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:21.584 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:21.584 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1144848144, 0x0, 418435064) start.
17-03-18 06:37:21.594 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:21.594 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1082280040, 0x0, 391868352) start.
17-03-18 06:37:21.774 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28821 848
17-03-18 06:37:21.874 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:37:21.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:37:21.924 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:37:21.944 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.004458,
17-03-18 06:37:21.974 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1082280040, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:37:21.974 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:37:21.974 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:21.974 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:21.974 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:37:21.974 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1144848144, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 06:37:21.974 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:37:21.974 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:21.984 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:21.984 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:37:22.154 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:37:22.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:37:22.154 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:22.154 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:22.154 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:37:22.154 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:37:22.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:37:22.154 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:22.154 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:22.154 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:37:22.344 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-18 06:37:22.344 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:37:22.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28821 150' command took 2 ms to send, 1413 ms to get response, and 1420 ms overall
17-03-18 06:37:22.344 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:37:22.344 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.131128876833577. ------
17-03-18 06:37:22.344 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:22.354 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13770 mm
17-03-18 06:37:22.354 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:37:22.354 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:22.354 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:37:22.354 -07 000000512 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 06:37:22.354 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30081, sync = True, waitForSettling = False)
17-03-18 06:37:22.354 -07 000000501 INF: Z Motor: Moving to -0.137702 mm, started at -0.131129 mm, distance = -6.57 um
17-03-18 06:37:22.364 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:22.364 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:22.364 -07 000000455 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:37:22.374 -07 000000501 INF: FPGA: Xmit ZDACW 30081\n [Z Motor]
17-03-18 06:37:22.374 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:37:22.374 -07 000000512 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:22.374 -07 000000512 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:37:22.374 -07 000000512 INF: Y Motor: Moving 1338 steps-14
17-03-18 06:37:22.374 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:37:22.384 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:37:22.384 -07 000000501 INF: FPGA: 'ZDACW 30081' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:37:22.394 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:37:22.404 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:22.404 -07 000000561 INF: FPGA: Recv ZDACR 30081
17-03-18 06:37:22.414 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:37:22.414 -07 000000501 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 06:37:22.554 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:37:22.554 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:37:22.554 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:22.554 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:37:22.554 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:37:22.554 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:22.564 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:37:22.564 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:37:22.564 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:22.574 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:37:22.584 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:37:22.584 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:37:22.764 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:37:22.764 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:37:22.824 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:22.824 -07 000000501 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:37:22.834 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:22.834 -07 000000512 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:22.834 -07 000000512 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:37:22.834 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.107 mm/sec
17-03-18 06:37:23.784 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:23.784 -07 000000437 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:37:23.794 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:23.794 -07 000000512 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:23.824 -07 000000512 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:37:23.824 -07 000000512 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:37:23.824 -07 000000512 INF: Y Motor: Moved to 64.8779 after 1469 ms (table move)
17-03-18 06:37:23.824 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137702 mm (DAC = 30081)
17-03-18 06:37:23.824 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:23.824 -07 000000590 INF: FPGA: Recv ZSGSRD 30730
17-03-18 06:37:23.834 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:37:23.834 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:23.834 -07 000000591 INF: FPGA: Recv ZSGSRD 30723
17-03-18 06:37:23.844 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:23.844 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:23.844 -07 000000591 INF: FPGA: Recv ZSGSRD 30732
17-03-18 06:37:23.854 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:23.854 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:23.854 -07 000000561 INF: FPGA: Recv ZSGSRD 30724
17-03-18 06:37:23.864 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:23.864 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:23.864 -07 000000561 INF: FPGA: Recv ZSGSRD 30722
17-03-18 06:37:23.874 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:23.874 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:23.874 -07 000000591 INF: FPGA: Recv ZSGSRD 30721
17-03-18 06:37:23.884 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:23.884 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:23.884 -07 000000561 INF: FPGA: Recv ZSGSRD 30721
17-03-18 06:37:23.894 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:23.894 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:23.894 -07 000000591 INF: FPGA: Recv ZSGSRD 30729
17-03-18 06:37:23.904 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:23.904 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:23.904 -07 000000591 INF: FPGA: Recv ZSGSRD 30729
17-03-18 06:37:23.914 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:23.914 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:23.914 -07 000000591 INF: FPGA: Recv ZSGSRD 30730
17-03-18 06:37:23.924 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:23.924 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:23.924 -07 000000591 INF: FPGA: Recv ZPIEZORD 26530
17-03-18 06:37:23.934 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:23.934 -07 000000608 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -9.2 V.
17-03-18 06:37:23.934 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30726 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30726 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30721 (-136.9 uncal um), Max = 30732 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:37:23.934 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30726, posNoise = 6, negNoise = 5
17-03-18 06:37:23.934 -07 000000608 INF: Z Motor: After move to -0.137702, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:23.934 -07 000000608 INF: Z Motor: Settle wait time = 1472 ms, measure time = 104 ms (allowed 150 ms), total time = 1576 ms
17-03-18 06:37:23.934 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:37:23.984 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 06:37:23.984 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:37:23.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:23.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:23.984 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:23.984 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:23.984 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:37:23.984 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:23.984 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:37:23.984 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:37:23.994 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:37:23.994 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:37:23.994 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:37:23.994 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:37:24.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:37:24.044 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:37:24.344 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:37:24.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:37:24.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:37:24.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 06:37:24.384 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:37:24.384 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 06:37:24.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:37:24.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 06:37:24.464 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:24.464 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:37:24.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:37:24.484 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:24.484 -07 000000626 INF: Autofocus start
17-03-18 06:37:24.484 -07 000000626 INF: MeasureProfile start
17-03-18 06:37:24.484 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:24.494 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:37:24.494 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:37:24.504 -07 000000626 INF: MeasureProfile done
17-03-18 06:37:24.504 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:37:24.504 -07 000000626 INF: Autofocus finished
17-03-18 06:37:24.694 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:37:24.694 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:37:24.694 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.137713694278882. ----------
17-03-18 06:37:24.694 -07 000000610 INF: Cycle	151	Tile	7	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:37:24.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28605, sync = True, waitForSettling = True)
17-03-18 06:37:24.704 -07 000000610 INF: Z Motor: Moving to -0.130945 mm, started at -0.137714 mm, distance = 6.77 um
17-03-18 06:37:24.704 -07 000000610 INF: FPGA: Xmit ZDACW 28605\n [Z Motor]
17-03-18 06:37:24.704 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:37:24.714 -07 000000610 INF: FPGA: 'ZDACW 28605' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:37:24.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:24.714 -07 000000512 INF: FPGA: Recv ZDACR 28605
17-03-18 06:37:24.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:24.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:37:24.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:24.874 -07 000000437 INF: FPGA: Recv ZSGSRD 29681
17-03-18 06:37:24.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:24.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:24.884 -07 000000437 INF: FPGA: Recv ZSGSRD 29669
17-03-18 06:37:24.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:24.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:24.894 -07 000000437 INF: FPGA: Recv ZSGSRD 29676
17-03-18 06:37:24.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:24.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:24.904 -07 000000501 INF: FPGA: Recv ZSGSRD 29680
17-03-18 06:37:24.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:24.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:24.914 -07 000000501 INF: FPGA: Recv ZSGSRD 29669
17-03-18 06:37:24.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:24.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:24.924 -07 000000501 INF: FPGA: Recv ZSGSRD 29676
17-03-18 06:37:24.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:24.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:24.934 -07 000000501 INF: FPGA: Recv ZSGSRD 29671
17-03-18 06:37:24.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:24.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:24.944 -07 000000501 INF: FPGA: Recv ZSGSRD 29677
17-03-18 06:37:24.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:24.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:24.954 -07 000000501 INF: FPGA: Recv ZSGSRD 29674
17-03-18 06:37:24.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:24.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:24.964 -07 000000512 INF: FPGA: Recv ZSGSRD 29674
17-03-18 06:37:24.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:24.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:24.974 -07 000000591 INF: FPGA: Recv ZPIEZORD 25157
17-03-18 06:37:24.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:24.984 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -9.9 V.
17-03-18 06:37:24.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29675 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29675 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29669 (-130.1 uncal um), Max = 29681 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:37:24.984 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29675, posNoise = 6, negNoise = 6
17-03-18 06:37:24.984 -07 000000610 INF: Z Motor: After move to -0.130945, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:24.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:37:24.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:24.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:24.984 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:24.984 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:24.984 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:37:24.984 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:24.984 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:37:24.984 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:37:24.984 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:24.984 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:37:24.984 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:37:24.984 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:37:24.994 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:37:24.994 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:37:24.994 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:37:24.994 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:37:25.004 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 06:37:25.004 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:37:25.004 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 06:37:25.004 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 25 ms.
17-03-18 06:37:25.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28781 150\n [Camera]
17-03-18 06:37:25.214 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:37:25.674 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:37:25.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:37:25.674 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:25.674 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:25.674 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:37:25.674 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:37:25.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:37:25.674 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:25.814 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:25.814 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) start.
17-03-18 06:37:25.864 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28781 848
17-03-18 06:37:26.014 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:37:26.064 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 06:37:26.064 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:37:26.064 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:26.074 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:26.074 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:37:26.204 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:37:26.204 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:37:26.204 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:26.204 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:37:26.214 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-18 06:37:26.244 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:37:26.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:37:26.244 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:26.244 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:37:26.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:37:26.244 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:26.244 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:26.244 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:37:26.254 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:26.254 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:37:26.434 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:37:26.434 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:37:26.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28781 150' command took 2 ms to send, 1412 ms to get response, and 1421 ms overall
17-03-18 06:37:26.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:37:26.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.130961847317891. ------
17-03-18 06:37:26.434 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:26.434 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13769 mm
17-03-18 06:37:26.434 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:37:26.654 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:37:26.654 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:37:26.654 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:26.654 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:37:26.654 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:37:26.654 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:26.654 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:26.654 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:26.654 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 06:37:26.664 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 06:37:26.664 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:37:26.664 -07 000000591 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 06:37:26.664 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:26.674 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:26.674 -07 000000461 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:37:26.674 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 231 ms to get response, and 235 ms overall
17-03-18 06:37:26.674 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 06:37:26.674 -07 000000591 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:26.674 -07 000000591 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:37:26.674 -07 000000447 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:37:26.674 -07 000000591 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:37:26.674 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30078, sync = True, waitForSettling = False)
17-03-18 06:37:26.674 -07 000000461 INF: Z Motor: Moving to -0.137688 mm, started at -0.130962 mm, distance = -6.73 um
17-03-18 06:37:26.684 -07 000000461 INF: FPGA: Xmit ZDACW 30078\n [Z Motor]
17-03-18 06:37:26.694 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:37:27.314 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:37:27.314 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:37:27.314 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:37:27.314 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:37:27.314 -07 000000447 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 630 ms to get response, and 637 ms overall
17-03-18 06:37:27.314 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 610 ms to get response, and 637 ms overall
17-03-18 06:37:27.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:37:27.314 -07 000000461 INF: FPGA: 'ZDACW 30078' command took 0 ms to send, 620 ms to get response, and 636 ms overall
17-03-18 06:37:27.334 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:27.334 -07 000000447 INF: FPGA: Recv ZDACR 30078
17-03-18 06:37:27.344 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:37:27.344 -07 000000461 INF: Z Motor: MoveAbsStepped took 666 ms (did NOT wait for settling yet))
17-03-18 06:37:27.364 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:27.374 -07 000000461 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:37:27.374 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:37:27.374 -07 000000591 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:27.374 -07 000000591 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:37:27.374 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 637 ms, distance = 0.845 mm, average velocity = 1.326 mm/sec
17-03-18 06:37:27.624 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.015368,
17-03-18 06:37:28.324 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:28.324 -07 000000447 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:37:28.334 -07 000000591 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:28.334 -07 000000591 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:28.374 -07 000000591 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:37:28.374 -07 000000591 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:37:28.374 -07 000000591 INF: Y Motor: Moved to 65.7129 after 1705 ms (table move)
17-03-18 06:37:28.374 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137688 mm (DAC = 30078)
17-03-18 06:37:28.374 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:28.384 -07 000000447 INF: FPGA: Recv ZSGSRD 30725
17-03-18 06:37:28.384 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:37:28.384 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:28.384 -07 000000480 INF: FPGA: Recv ZSGSRD 30721
17-03-18 06:37:28.394 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:28.394 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:28.394 -07 000000438 INF: FPGA: Recv ZSGSRD 30719
17-03-18 06:37:28.404 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:28.404 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:28.404 -07 000000480 INF: FPGA: Recv ZSGSRD 30723
17-03-18 06:37:28.414 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:28.414 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:28.414 -07 000000591 INF: FPGA: Recv ZSGSRD 30727
17-03-18 06:37:28.424 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:28.424 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:28.424 -07 000000480 INF: FPGA: Recv ZSGSRD 30723
17-03-18 06:37:28.434 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:28.434 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:28.434 -07 000000447 INF: FPGA: Recv ZSGSRD 30726
17-03-18 06:37:28.444 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:28.444 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:28.444 -07 000000461 INF: FPGA: Recv ZSGSRD 30721
17-03-18 06:37:28.454 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:28.454 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:28.454 -07 000000480 INF: FPGA: Recv ZSGSRD 30718
17-03-18 06:37:28.464 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:28.464 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:28.464 -07 000000461 INF: FPGA: Recv ZSGSRD 30726
17-03-18 06:37:28.474 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:28.474 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:28.474 -07 000000591 INF: FPGA: Recv ZPIEZORD 26504
17-03-18 06:37:28.484 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:28.484 -07 000000626 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -9.3 V.
17-03-18 06:37:28.484 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30723 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30723 (-136.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30718 (-136.9 uncal um), Max = 30727 (-136.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:37:28.484 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30723, posNoise = 4, negNoise = 5
17-03-18 06:37:28.484 -07 000000626 INF: Z Motor: After move to -0.137688, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:28.484 -07 000000626 INF: Z Motor: Settle wait time = 1703 ms, measure time = 103 ms (allowed 150 ms), total time = 1806 ms
17-03-18 06:37:28.484 -07 000000626 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:37:28.534 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2092 ms
17-03-18 06:37:28.534 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:37:28.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:28.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:28.534 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:28.534 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:28.534 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:37:28.534 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:28.534 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:37:28.534 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:37:28.544 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:37:28.544 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:37:28.544 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:37:28.544 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:37:28.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:37:28.594 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:37:28.894 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:37:28.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:37:28.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:37:28.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-18 06:37:28.934 -07 000000382 INF: FPGA: Recv @CAMSNAP 383
17-03-18 06:37:28.934 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 06:37:28.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 387 ms overall
17-03-18 06:37:29.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:37:29.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:29.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:37:29.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:37:29.034 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:29.034 -07 000000382 INF: Autofocus start
17-03-18 06:37:29.034 -07 000000382 INF: MeasureProfile start
17-03-18 06:37:29.034 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:29.044 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:37:29.044 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:37:29.044 -07 000000382 INF: MeasureProfile done
17-03-18 06:37:29.044 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:37:29.044 -07 000000382 INF: Autofocus finished
17-03-18 06:37:29.244 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:37:29.244 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:37:29.244 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.137694421642457. ----------
17-03-18 06:37:29.244 -07 000000610 INF: Cycle	151	Tile	8	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:37:29.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28585, sync = True, waitForSettling = True)
17-03-18 06:37:29.254 -07 000000610 INF: Z Motor: Moving to -0.130854 mm, started at -0.137694 mm, distance = 6.84 um
17-03-18 06:37:29.254 -07 000000610 INF: FPGA: Xmit ZDACW 28585\n [Z Motor]
17-03-18 06:37:29.254 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:37:29.264 -07 000000610 INF: FPGA: 'ZDACW 28585' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:29.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:29.264 -07 000000382 INF: FPGA: Recv ZDACR 28585
17-03-18 06:37:29.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:29.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:37:29.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:29.424 -07 000000591 INF: FPGA: Recv ZSGSRD 29661
17-03-18 06:37:29.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:29.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:29.434 -07 000000382 INF: FPGA: Recv ZSGSRD 29658
17-03-18 06:37:29.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:29.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:29.444 -07 000000461 INF: FPGA: Recv ZSGSRD 29663
17-03-18 06:37:29.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:29.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:29.454 -07 000000480 INF: FPGA: Recv ZSGSRD 29659
17-03-18 06:37:29.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:29.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:29.464 -07 000000438 INF: FPGA: Recv ZSGSRD 29663
17-03-18 06:37:29.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:29.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:29.474 -07 000000382 INF: FPGA: Recv ZSGSRD 29664
17-03-18 06:37:29.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:29.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:29.484 -07 000000438 INF: FPGA: Recv ZSGSRD 29656
17-03-18 06:37:29.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:29.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:29.494 -07 000000480 INF: FPGA: Recv ZSGSRD 29659
17-03-18 06:37:29.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:29.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:29.504 -07 000000461 INF: FPGA: Recv ZSGSRD 29657
17-03-18 06:37:29.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:29.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:29.514 -07 000000569 INF: FPGA: Recv ZSGSRD 29665
17-03-18 06:37:29.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:29.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:29.524 -07 000000606 INF: FPGA: Recv ZPIEZORD 25128
17-03-18 06:37:29.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:29.534 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -9.9 V.
17-03-18 06:37:29.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29660 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29660 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29656 (-130.1 uncal um), Max = 29665 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:37:29.534 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29660, posNoise = 5, negNoise = 4
17-03-18 06:37:29.534 -07 000000610 INF: Z Motor: After move to -0.130854, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:29.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:37:29.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:29.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:29.534 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:29.534 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:29.534 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:37:29.534 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:37:29.534 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:37:29.534 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:29.534 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:37:29.534 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:37:29.534 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:29.534 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:37:29.534 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:37:29.544 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:37:29.544 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:37:29.544 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:37:29.544 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:37:29.544 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:37:29.544 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:37:29.544 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:37:29.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28762 150\n [Camera]
17-03-18 06:37:29.754 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:37:30.214 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:37:30.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:37:30.214 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:30.214 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:30.214 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:37:30.214 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:37:30.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:37:30.214 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:30.344 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:30.344 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) start.
17-03-18 06:37:30.404 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28762 848
17-03-18 06:37:30.554 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:37:30.614 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:37:30.614 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:37:30.614 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:30.614 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:30.614 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:37:30.734 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:37:30.734 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:37:30.734 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:30.734 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:37:30.744 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-18 06:37:30.784 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:37:30.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:37:30.784 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:30.784 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:37:30.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:37:30.784 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:30.784 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:30.784 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:37:30.784 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:30.784 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:37:30.974 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-18 06:37:30.974 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:37:30.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28762 150' command took 2 ms to send, 1412 ms to get response, and 1420 ms overall
17-03-18 06:37:30.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:37:30.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.130865484135765. ------
17-03-18 06:37:30.974 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:30.974 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13720 mm
17-03-18 06:37:30.974 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:37:30.984 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:30.984 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:37:30.984 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:37:30.984 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:37:30.984 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 06:37:30.984 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29971, sync = True, waitForSettling = False)
17-03-18 06:37:30.984 -07 000000461 INF: Z Motor: Moving to -0.137198 mm, started at -0.130865 mm, distance = -6.33 um
17-03-18 06:37:30.994 -07 000000461 INF: FPGA: Xmit ZDACW 29971\n [Z Motor]
17-03-18 06:37:30.994 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:37:31.004 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:31.004 -07 000000461 INF: FPGA: 'ZDACW 29971' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:37:31.004 -07 000000455 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:37:31.014 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:37:31.014 -07 000000438 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:31.014 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:37:31.014 -07 000000438 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:37:31.014 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:31.014 -07 000000382 INF: FPGA: Recv ZDACR 29971
17-03-18 06:37:31.024 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:37:31.024 -07 000000461 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:37:31.024 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:37:31.174 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:37:31.174 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:37:31.174 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:31.184 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:31.184 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:37:31.184 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:37:31.184 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:31.184 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:37:31.184 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:37:31.184 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:31.184 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:37:31.194 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:37:31.394 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:37:31.394 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:37:31.444 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:31.454 -07 000000591 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:37:31.454 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:37:31.454 -07 000000438 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:31.454 -07 000000438 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:37:31.454 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-18 06:37:31.874 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:37:31.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:37:32.404 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:32.404 -07 000000606 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:37:32.414 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:32.414 -07 000000438 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:32.444 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:37:32.444 -07 000000438 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:37:32.444 -07 000000438 INF: Y Motor: Moved to 66.5381 after 1460 ms (table move)
17-03-18 06:37:32.444 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137198 mm (DAC = 29971)
17-03-18 06:37:32.444 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:32.454 -07 000000591 INF: FPGA: Recv ZSGSRD 30645
17-03-18 06:37:32.454 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:37:32.454 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:32.454 -07 000000438 INF: FPGA: Recv ZSGSRD 30643
17-03-18 06:37:32.464 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:37:32.464 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:32.464 -07 000000591 INF: FPGA: Recv ZSGSRD 30652
17-03-18 06:37:32.474 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:37:32.474 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:32.474 -07 000000591 INF: FPGA: Recv ZSGSRD 30640
17-03-18 06:37:32.484 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:32.484 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:32.484 -07 000000591 INF: FPGA: Recv ZSGSRD 30643
17-03-18 06:37:32.494 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:32.494 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:32.494 -07 000000591 INF: FPGA: Recv ZSGSRD 30643
17-03-18 06:37:32.504 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:32.504 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:32.504 -07 000000606 INF: FPGA: Recv ZSGSRD 30649
17-03-18 06:37:32.514 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:32.514 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:32.514 -07 000000591 INF: FPGA: Recv ZSGSRD 30651
17-03-18 06:37:32.524 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:32.524 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:32.524 -07 000000606 INF: FPGA: Recv ZSGSRD 30653
17-03-18 06:37:32.534 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:32.534 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:32.534 -07 000000438 INF: FPGA: Recv ZSGSRD 30646
17-03-18 06:37:32.544 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:32.544 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:32.544 -07 000000438 INF: FPGA: Recv ZPIEZORD 26461
17-03-18 06:37:32.554 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:32.554 -07 000000561 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.573 V. Piezo Error = -9.2 V.
17-03-18 06:37:32.554 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30646 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30646 (-136.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30640 (-136.4 uncal um), Max = 30653 (-136.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:37:32.554 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30646, posNoise = 7, negNoise = 6
17-03-18 06:37:32.554 -07 000000561 INF: Z Motor: After move to -0.137198, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:32.554 -07 000000561 INF: Z Motor: Settle wait time = 1463 ms, measure time = 102 ms (allowed 150 ms), total time = 1565 ms
17-03-18 06:37:32.554 -07 000000561 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:37:32.604 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 06:37:32.604 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:37:32.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:32.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:32.604 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:32.604 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:37:32.604 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:32.604 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:32.604 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:37:32.604 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:37:32.614 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:37:32.614 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:37:32.614 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:37:32.614 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:37:32.624 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:37:32.674 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:37:32.964 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:37:32.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:37:32.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:37:32.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-18 06:37:32.994 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.003063,
17-03-18 06:37:33.004 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:37:33.004 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-18 06:37:33.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:37:33.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:37:33.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:33.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:37:33.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:37:33.104 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:33.104 -07 000000382 INF: Autofocus start
17-03-18 06:37:33.104 -07 000000382 INF: MeasureProfile start
17-03-18 06:37:33.114 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:33.114 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:37:33.114 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:37:33.114 -07 000000382 INF: MeasureProfile done
17-03-18 06:37:33.114 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:37:33.114 -07 000000382 INF: Autofocus finished
17-03-18 06:37:33.314 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:37:33.314 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:37:33.314 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.137199757307541. ----------
17-03-18 06:37:33.314 -07 000000610 INF: Cycle	151	Tile	9	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:37:33.324 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28478, sync = True, waitForSettling = True)
17-03-18 06:37:33.324 -07 000000610 INF: Z Motor: Moving to -0.130364 mm, started at -0.137200 mm, distance = 6.84 um
17-03-18 06:37:33.324 -07 000000610 INF: FPGA: Xmit ZDACW 28478\n [Z Motor]
17-03-18 06:37:33.324 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:37:33.334 -07 000000610 INF: FPGA: 'ZDACW 28478' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:37:33.334 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:33.334 -07 000000606 INF: FPGA: Recv ZDACR 28478
17-03-18 06:37:33.344 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:33.344 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:37:33.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:33.494 -07 000000438 INF: FPGA: Recv ZSGSRD 29577
17-03-18 06:37:33.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:33.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:33.504 -07 000000382 INF: FPGA: Recv ZSGSRD 29589
17-03-18 06:37:33.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:33.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:33.514 -07 000000512 INF: FPGA: Recv ZSGSRD 29582
17-03-18 06:37:33.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:33.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:33.524 -07 000000561 INF: FPGA: Recv ZSGSRD 29579
17-03-18 06:37:33.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:33.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:33.534 -07 000000606 INF: FPGA: Recv ZSGSRD 29583
17-03-18 06:37:33.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:33.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:33.544 -07 000000561 INF: FPGA: Recv ZSGSRD 29589
17-03-18 06:37:33.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:33.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:33.554 -07 000000512 INF: FPGA: Recv ZSGSRD 29589
17-03-18 06:37:33.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:33.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:33.564 -07 000000561 INF: FPGA: Recv ZSGSRD 29582
17-03-18 06:37:33.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:33.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:33.574 -07 000000382 INF: FPGA: Recv ZSGSRD 29583
17-03-18 06:37:33.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:33.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:33.584 -07 000000561 INF: FPGA: Recv ZSGSRD 29585
17-03-18 06:37:33.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:33.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:33.594 -07 000000382 INF: FPGA: Recv ZPIEZORD 25036
17-03-18 06:37:33.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:33.604 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.345 V. Piezo Error = -10.0 V.
17-03-18 06:37:33.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29584 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29583 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29577 (-129.6 uncal um), Max = 29589 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:37:33.604 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29584, posNoise = 5, negNoise = 7
17-03-18 06:37:33.604 -07 000000610 INF: Z Motor: After move to -0.130364, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:33.604 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:37:33.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:33.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:33.604 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:33.604 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:33.604 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:37:33.604 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:37:33.604 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:37:33.604 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:33.604 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:37:33.604 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:37:33.604 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:33.604 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:37:33.614 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:37:33.614 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:37:33.614 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:37:33.614 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:37:33.624 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:37:33.624 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:37:33.624 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:37:33.624 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:37:33.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28655 150\n [Camera]
17-03-18 06:37:33.824 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:37:34.284 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:37:34.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:37:34.284 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:34.284 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:34.284 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:37:34.294 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:37:34.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:37:34.294 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:34.294 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:34.294 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:37:34.474 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28655 848
17-03-18 06:37:34.624 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:37:34.674 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:37:34.674 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:37:34.674 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:34.674 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:34.684 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:37:34.684 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:37:34.684 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:34.684 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:37:34.684 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:34.684 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:37:34.854 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:37:34.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:37:34.854 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:34.964 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:37:34.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:37:34.964 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:34.964 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:37:34.964 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:34.974 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:34.974 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) start.
17-03-18 06:37:35.044 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:37:35.044 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:37:35.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28655 150' command took 2 ms to send, 1415 ms to get response, and 1421 ms overall
17-03-18 06:37:35.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:37:35.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.130377244012991. ------
17-03-18 06:37:35.054 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:35.054 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13711 mm
17-03-18 06:37:35.054 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:37:35.054 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:37:35.054 -07 000000590 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 06:37:35.054 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29952, sync = True, waitForSettling = False)
17-03-18 06:37:35.054 -07 000000437 INF: Z Motor: Moving to -0.137111 mm, started at -0.130377 mm, distance = -6.73 um
17-03-18 06:37:35.054 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:35.064 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:37:35.064 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:35.064 -07 000000561 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:37:35.074 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:37:35.074 -07 000000590 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:35.074 -07 000000437 INF: FPGA: Xmit ZDACW 29952\n [Z Motor]
17-03-18 06:37:35.074 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:37:35.074 -07 000000590 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:37:35.074 -07 000000590 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:37:35.084 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:37:35.084 -07 000000437 INF: FPGA: 'ZDACW 29952' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:37:35.094 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:37:35.104 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:35.104 -07 000000569 INF: FPGA: Recv ZDACR 29952
17-03-18 06:37:35.114 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:37:35.114 -07 000000437 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 06:37:35.284 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:37:35.284 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:37:35.374 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:37:35.374 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:37:35.374 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:35.374 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:37:35.374 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:37:35.374 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:35.374 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:35.374 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:35.374 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 06:37:35.384 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:37:35.464 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 06:37:35.464 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 06:37:35.524 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:35.524 -07 000000608 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:37:35.534 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:35.534 -07 000000590 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:35.534 -07 000000590 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 06:37:35.534 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.160 mm/sec
17-03-18 06:37:36.484 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:36.484 -07 000000480 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:37:36.494 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:36.494 -07 000000590 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:36.524 -07 000000590 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:37:36.524 -07 000000590 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:37:36.524 -07 000000590 INF: Y Motor: Moved to 67.3711 after 1469 ms (table move)
17-03-18 06:37:36.524 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137111 mm (DAC = 29952)
17-03-18 06:37:36.524 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:36.524 -07 000000480 INF: FPGA: Recv ZSGSRD 30637
17-03-18 06:37:36.534 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:37:36.534 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:36.534 -07 000000480 INF: FPGA: Recv ZSGSRD 30635
17-03-18 06:37:36.544 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:36.544 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:36.544 -07 000000480 INF: FPGA: Recv ZSGSRD 30629
17-03-18 06:37:36.554 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:36.554 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:36.554 -07 000000480 INF: FPGA: Recv ZSGSRD 30630
17-03-18 06:37:36.564 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:36.564 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:36.564 -07 000000480 INF: FPGA: Recv ZSGSRD 30629
17-03-18 06:37:36.574 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:36.574 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:36.574 -07 000000480 INF: FPGA: Recv ZSGSRD 30635
17-03-18 06:37:36.584 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:36.584 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:36.584 -07 000000480 INF: FPGA: Recv ZSGSRD 30636
17-03-18 06:37:36.594 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:36.594 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:36.594 -07 000000480 INF: FPGA: Recv ZSGSRD 30638
17-03-18 06:37:36.604 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:36.604 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:36.604 -07 000000590 INF: FPGA: Recv ZSGSRD 30633
17-03-18 06:37:36.614 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:36.614 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:36.614 -07 000000480 INF: FPGA: Recv ZSGSRD 30635
17-03-18 06:37:36.624 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:36.624 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:36.624 -07 000000480 INF: FPGA: Recv ZPIEZORD 26438
17-03-18 06:37:36.634 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:36.634 -07 000000512 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.570 V. Piezo Error = -9.2 V.
17-03-18 06:37:36.634 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30634 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30635 (-136.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30629 (-136.3 uncal um), Max = 30638 (-136.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:37:36.634 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30634, posNoise = 4, negNoise = 5
17-03-18 06:37:36.634 -07 000000512 INF: Z Motor: After move to -0.137111, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:36.634 -07 000000512 INF: Z Motor: Settle wait time = 1472 ms, measure time = 104 ms (allowed 150 ms), total time = 1576 ms
17-03-18 06:37:36.634 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:37:36.684 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 06:37:36.684 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:37:36.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:36.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:36.684 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:36.684 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:36.684 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:37:36.684 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:36.684 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:36.684 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:37:36.694 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:37:36.694 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:37:36.704 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:37:36.704 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:37:36.704 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:37:36.754 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:37:36.874 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:37:36.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:37:37.054 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:37:37.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:37:37.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:37:37.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 06:37:37.094 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:37:37.094 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 06:37:37.094 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 387 ms overall
17-03-18 06:37:37.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:37:37.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:37.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:37:37.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:37:37.194 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:37.194 -07 000000480 INF: Autofocus start
17-03-18 06:37:37.194 -07 000000480 INF: MeasureProfile start
17-03-18 06:37:37.194 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:37.204 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:37:37.204 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:37:37.204 -07 000000480 INF: MeasureProfile done
17-03-18 06:37:37.204 -07 000000480 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:37:37.204 -07 000000480 INF: Autofocus finished
17-03-18 06:37:37.404 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:37:37.404 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:37:37.404 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.13712266676184. ----------
17-03-18 06:37:37.404 -07 000000610 INF: Cycle	151	Tile	10	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:37:37.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28493, sync = True, waitForSettling = True)
17-03-18 06:37:37.414 -07 000000610 INF: Z Motor: Moving to -0.130433 mm, started at -0.137123 mm, distance = 6.69 um
17-03-18 06:37:37.414 -07 000000610 INF: FPGA: Xmit ZDACW 28493\n [Z Motor]
17-03-18 06:37:37.414 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 06:37:37.424 -07 000000610 INF: FPGA: 'ZDACW 28493' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:37:37.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:37.424 -07 000000626 INF: FPGA: Recv ZDACR 28493
17-03-18 06:37:37.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:37.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:37:37.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:37.584 -07 000000590 INF: FPGA: Recv ZSGSRD 29597
17-03-18 06:37:37.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:37.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:37.594 -07 000000590 INF: FPGA: Recv ZSGSRD 29595
17-03-18 06:37:37.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:37.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:37.604 -07 000000512 INF: FPGA: Recv ZSGSRD 29597
17-03-18 06:37:37.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:37.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:37.614 -07 000000626 INF: FPGA: Recv ZSGSRD 29590
17-03-18 06:37:37.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:37.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:37.624 -07 000000512 INF: FPGA: Recv ZSGSRD 29593
17-03-18 06:37:37.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:37.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:37.634 -07 000000590 INF: FPGA: Recv ZSGSRD 29599
17-03-18 06:37:37.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:37.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:37.644 -07 000000626 INF: FPGA: Recv ZSGSRD 29588
17-03-18 06:37:37.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:37.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:37.654 -07 000000590 INF: FPGA: Recv ZSGSRD 29594
17-03-18 06:37:37.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:37.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:37.664 -07 000000512 INF: FPGA: Recv ZSGSRD 29589
17-03-18 06:37:37.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:37.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:37.674 -07 000000480 INF: FPGA: Recv ZSGSRD 29590
17-03-18 06:37:37.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:37.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:37.684 -07 000000512 INF: FPGA: Recv ZPIEZORD 25071
17-03-18 06:37:37.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:37.694 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -9.9 V.
17-03-18 06:37:37.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29593 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29594 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29588 (-129.6 uncal um), Max = 29599 (-129.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:37:37.694 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29593, posNoise = 6, negNoise = 5
17-03-18 06:37:37.694 -07 000000610 INF: Z Motor: After move to -0.130433, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:37.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:37:37.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:37.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:37.694 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:37.694 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:37.694 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:37:37.694 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:37.694 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:37:37.694 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:37:37.694 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:37.694 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:37:37.694 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:37:37.694 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:37:37.704 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:37:37.704 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:37:37.704 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:37:37.704 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:37:37.714 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:37:37.714 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:37:37.714 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:37:37.714 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:37:37.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28670 150\n [Camera]
17-03-18 06:37:37.914 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:37:38.364 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.989471,
17-03-18 06:37:38.374 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:37:38.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:37:38.374 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:38.384 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:37:38.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:37:38.384 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:38.384 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:38.384 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:37:38.384 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:38.384 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:37:38.574 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28670 848
17-03-18 06:37:38.714 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:37:38.754 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:37:38.754 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:37:38.754 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:38.754 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:37:38.754 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:37:38.754 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:38.754 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:38.754 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:38.754 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:37:38.764 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:37:38.944 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:37:38.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:37:38.944 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:39.054 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:37:39.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:37:39.054 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:39.054 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:39.054 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:37:39.064 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:39.064 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) start.
17-03-18 06:37:39.454 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:37:39.454 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:37:39.454 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:39.454 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:37:39.454 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:37:39.454 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:39.464 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:39.464 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 06:37:39.464 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:37:39.464 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:37:39.474 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:37:39.474 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:37:39.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28670 150' command took 2 ms to send, 1758 ms to get response, and 1764 ms overall
17-03-18 06:37:39.484 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:37:39.484 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.130435061922267. ------
17-03-18 06:37:39.484 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:40.064 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13688 mm
17-03-18 06:37:40.064 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:37:40.594 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:40.594 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1102 ms to get response, and 1108 ms overall
17-03-18 06:37:40.594 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:37:40.594 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:37:40.594 -07 000000591 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 06:37:40.604 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:41.124 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29901, sync = True, waitForSettling = False)
17-03-18 06:37:41.124 -07 000000569 INF: Z Motor: Moving to -0.136878 mm, started at -0.130435 mm, distance = -6.44 um
17-03-18 06:37:41.124 -07 000000569 INF: FPGA: Xmit ZDACW 29901\n [Z Motor]
17-03-18 06:37:41.654 -07 000000561 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:37:41.654 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:37:41.654 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:37:41.654 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1040 ms to get response, and 1056 ms overall
17-03-18 06:37:41.654 -07 000000591 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:41.654 -07 000000591 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:37:41.654 -07 000000591 INF: Y Motor: Moving 1346 steps-24
17-03-18 06:37:41.654 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:37:41.654 -07 000000569 INF: FPGA: 'ZDACW 29901' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-18 06:37:41.654 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1050 ms to get response, and 1057 ms overall
17-03-18 06:37:41.664 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:41.664 -07 000000561 INF: FPGA: Recv ZDACR 29901
17-03-18 06:37:41.674 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:37:41.674 -07 000000569 INF: Z Motor: MoveAbsStepped took 548 ms (did NOT wait for settling yet))
17-03-18 06:37:41.874 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:37:41.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:37:42.024 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 06:37:42.034 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 06:37:42.084 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:42.084 -07 000000561 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:37:42.094 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:37:42.094 -07 000000591 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:42.094 -07 000000591 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:37:42.094 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.842 mm, average velocity = 2.226 mm/sec
17-03-18 06:37:43.044 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:43.044 -07 000000590 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:37:43.054 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:43.054 -07 000000591 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:43.084 -07 000000591 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:37:43.084 -07 000000591 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:37:43.084 -07 000000591 INF: Y Motor: Moved to 68.2041 after 2489 ms (table move)
17-03-18 06:37:43.084 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136878 mm (DAC = 29901)
17-03-18 06:37:43.084 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:43.094 -07 000000591 INF: FPGA: Recv ZSGSRD 30601
17-03-18 06:37:43.094 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:37:43.104 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:43.104 -07 000000590 INF: FPGA: Recv ZSGSRD 30599
17-03-18 06:37:43.114 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:37:43.114 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:43.114 -07 000000591 INF: FPGA: Recv ZSGSRD 30594
17-03-18 06:37:43.124 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:43.124 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:43.124 -07 000000591 INF: FPGA: Recv ZSGSRD 30603
17-03-18 06:37:43.134 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:43.134 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:43.134 -07 000000591 INF: FPGA: Recv ZSGSRD 30595
17-03-18 06:37:43.144 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:43.144 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:43.144 -07 000000591 INF: FPGA: Recv ZSGSRD 30597
17-03-18 06:37:43.154 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:43.154 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:43.154 -07 000000591 INF: FPGA: Recv ZSGSRD 30592
17-03-18 06:37:43.164 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:43.164 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:43.164 -07 000000590 INF: FPGA: Recv ZSGSRD 30595
17-03-18 06:37:43.174 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:43.174 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:43.174 -07 000000590 INF: FPGA: Recv ZSGSRD 30600
17-03-18 06:37:43.184 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:43.184 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:43.184 -07 000000590 INF: FPGA: Recv ZSGSRD 30594
17-03-18 06:37:43.194 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:43.194 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:43.194 -07 000000591 INF: FPGA: Recv ZPIEZORD 26393
17-03-18 06:37:43.204 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:43.204 -07 000000437 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.563 V. Piezo Error = -9.2 V.
17-03-18 06:37:43.204 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30597 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30596 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30592 (-136.1 uncal um), Max = 30603 (-136.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:37:43.204 -07 000000437 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30597, posNoise = 6, negNoise = 5
17-03-18 06:37:43.204 -07 000000437 INF: Z Motor: After move to -0.136878, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:43.204 -07 000000437 INF: Z Motor: Settle wait time = 1965 ms, measure time = 114 ms (allowed 150 ms), total time = 2079 ms
17-03-18 06:37:43.204 -07 000000437 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 06:37:43.244 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3178 ms
17-03-18 06:37:43.244 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:37:43.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:43.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:43.244 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:43.244 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:43.244 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:37:43.244 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:43.244 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:43.244 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:37:43.254 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:37:43.254 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:37:43.264 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:37:43.264 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:37:43.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:37:43.314 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 06:37:43.614 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 06:37:43.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 06:37:43.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:37:43.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 06:37:43.654 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:37:43.654 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 06:37:43.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:37:43.734 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.975845,
17-03-18 06:37:43.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 06:37:43.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:43.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:37:43.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 06:37:43.754 -07 000000591 INF: Autofocus start
17-03-18 06:37:43.754 -07 000000591 INF: MeasureProfile start
17-03-18 06:37:43.764 -07 000000591 INF: MeasureProfile done
17-03-18 06:37:43.764 -07 000000591 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:37:43.764 -07 000000591 INF: Autofocus finished
17-03-18 06:37:43.774 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:43.774 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:43.784 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:37:43.784 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:37:43.984 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:37:43.984 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:37:43.984 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.136884970912595. ----------
17-03-18 06:37:43.984 -07 000000610 INF: Cycle	151	Tile	11	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:37:43.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28396, sync = True, waitForSettling = True)
17-03-18 06:37:43.994 -07 000000610 INF: Z Motor: Moving to -0.129989 mm, started at -0.136885 mm, distance = 6.90 um
17-03-18 06:37:43.994 -07 000000610 INF: FPGA: Xmit ZDACW 28396\n [Z Motor]
17-03-18 06:37:43.994 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:37:44.004 -07 000000610 INF: FPGA: 'ZDACW 28396' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:44.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:44.004 -07 000000591 INF: FPGA: Recv ZDACR 28396
17-03-18 06:37:44.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:44.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:37:44.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:44.164 -07 000000501 INF: FPGA: Recv ZSGSRD 29519
17-03-18 06:37:44.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:44.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:44.174 -07 000000608 INF: FPGA: Recv ZSGSRD 29530
17-03-18 06:37:44.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:44.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:44.184 -07 000000438 INF: FPGA: Recv ZSGSRD 29528
17-03-18 06:37:44.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:44.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:44.194 -07 000000437 INF: FPGA: Recv ZSGSRD 29523
17-03-18 06:37:44.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:44.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:44.204 -07 000000480 INF: FPGA: Recv ZSGSRD 29527
17-03-18 06:37:44.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:44.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:44.214 -07 000000608 INF: FPGA: Recv ZSGSRD 29529
17-03-18 06:37:44.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:44.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:44.224 -07 000000590 INF: FPGA: Recv ZSGSRD 29529
17-03-18 06:37:44.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:37:44.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:44.234 -07 000000437 INF: FPGA: Recv ZSGSRD 29525
17-03-18 06:37:44.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:44.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:44.244 -07 000000608 INF: FPGA: Recv ZSGSRD 29523
17-03-18 06:37:44.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:44.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:44.254 -07 000000480 INF: FPGA: Recv ZSGSRD 29527
17-03-18 06:37:44.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:44.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:44.264 -07 000000590 INF: FPGA: Recv ZPIEZORD 24973
17-03-18 06:37:44.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:44.274 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -10.0 V.
17-03-18 06:37:44.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29526 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29527 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29519 (-129.2 uncal um), Max = 29530 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:37:44.274 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29526, posNoise = 4, negNoise = 7
17-03-18 06:37:44.274 -07 000000610 INF: Z Motor: After move to -0.129989, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:44.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:37:44.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:44.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:44.274 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:44.274 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:37:44.274 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:37:44.274 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:44.274 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:37:44.274 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:44.274 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:37:44.274 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:37:44.274 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:44.274 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:37:44.284 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:37:44.284 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:37:44.284 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:37:44.284 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:37:44.294 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:37:44.294 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:37:44.294 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:37:44.294 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:37:44.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28573 150\n [Camera]
17-03-18 06:37:44.504 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:37:44.964 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:37:44.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:37:44.964 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:44.964 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:37:44.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:37:44.964 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:44.964 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:44.964 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2558951584, 0x0, 391868352) start.
17-03-18 06:37:44.974 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:44.974 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:37:45.154 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28573 848
17-03-18 06:37:45.304 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:37:45.344 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2558951584, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:37:45.344 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:37:45.344 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:45.354 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:45.354 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:37:45.354 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:37:45.354 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:37:45.354 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:45.354 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:45.364 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:37:45.524 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:37:45.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:37:45.534 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:45.534 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:45.534 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:37:45.914 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 06:37:45.914 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 06:37:45.914 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:45.914 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:37:45.914 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:37:45.924 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:37:45.924 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:37:45.924 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:37:45.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28573 150' command took 2 ms to send, 1617 ms to get response, and 1627 ms overall
17-03-18 06:37:45.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:37:45.924 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:45.924 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:45.924 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:37:46.144 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:37:46.144 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.130004639708769. ------
17-03-18 06:37:46.314 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 06:37:46.314 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:37:46.314 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:46.324 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:46.324 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:37:46.334 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:47.314 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13660 mm
17-03-18 06:37:47.314 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:37:48.314 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:48.314 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:37:48.314 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1970 ms to get response, and 1971 ms overall
17-03-18 06:37:48.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:37:48.314 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:37:48.324 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:37:48.324 -07 000000626 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 06:37:48.324 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:49.314 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29841, sync = True, waitForSettling = False)
17-03-18 06:37:49.314 -07 000000512 INF: Z Motor: Moving to -0.136603 mm, started at -0.130005 mm, distance = -6.60 um
17-03-18 06:37:49.314 -07 000000512 INF: FPGA: Xmit ZDACW 29841\n [Z Motor]
17-03-18 06:37:50.314 -07 000000461 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:37:50.314 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:37:50.314 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1980 ms to get response, and 1990 ms overall
17-03-18 06:37:50.314 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:37:50.314 -07 000000512 INF: FPGA: 'ZDACW 29841' command took 0 ms to send, 991 ms to get response, and 999 ms overall
17-03-18 06:37:50.314 -07 000000626 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:50.314 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:50.314 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1990 ms to get response, and 1999 ms overall
17-03-18 06:37:50.314 -07 000000461 INF: FPGA: Recv ZDACR 29841
17-03-18 06:37:50.314 -07 000000626 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:37:50.314 -07 000000626 INF: Y Motor: Moving 1341 steps-17
17-03-18 06:37:50.324 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:37:50.324 -07 000000512 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 06:37:50.324 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:37:50.694 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 06:37:50.694 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-18 06:37:50.744 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:50.754 -07 000000512 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:37:50.754 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:37:50.754 -07 000000626 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:50.754 -07 000000626 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 06:37:50.754 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.839 mm, average velocity = 2.212 mm/sec
17-03-18 06:37:50.934 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 3.974486,
17-03-18 06:37:51.704 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:51.704 -07 000000382 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:37:51.714 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:51.714 -07 000000626 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:51.744 -07 000000626 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:37:51.744 -07 000000626 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:37:51.744 -07 000000626 INF: Y Motor: Moved to 69.0259 after 3422 ms (table move)
17-03-18 06:37:51.744 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136603 mm (DAC = 29841)
17-03-18 06:37:51.744 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:51.744 -07 000000512 INF: FPGA: Recv ZSGSRD 30559
17-03-18 06:37:51.754 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:37:51.754 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:51.754 -07 000000561 INF: FPGA: Recv ZSGSRD 30548
17-03-18 06:37:51.764 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:51.764 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:51.764 -07 000000382 INF: FPGA: Recv ZSGSRD 30555
17-03-18 06:37:51.774 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:51.774 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:51.774 -07 000000569 INF: FPGA: Recv ZSGSRD 30548
17-03-18 06:37:51.784 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:51.784 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:51.784 -07 000000382 INF: FPGA: Recv ZSGSRD 30551
17-03-18 06:37:51.794 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:51.794 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:51.794 -07 000000501 INF: FPGA: Recv ZSGSRD 30549
17-03-18 06:37:51.804 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:51.804 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:51.804 -07 000000569 INF: FPGA: Recv ZSGSRD 30556
17-03-18 06:37:51.814 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:51.814 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:51.814 -07 000000561 INF: FPGA: Recv ZSGSRD 30541
17-03-18 06:37:51.824 -07 000000455 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:51.824 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:51.824 -07 000000438 INF: FPGA: Recv ZSGSRD 30555
17-03-18 06:37:51.834 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:51.834 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:51.834 -07 000000382 INF: FPGA: Recv ZSGSRD 30552
17-03-18 06:37:51.844 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:51.844 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:51.844 -07 000000438 INF: FPGA: Recv ZPIEZORD 26358
17-03-18 06:37:51.854 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:51.854 -07 000000455 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.553 V. Piezo Error = -9.2 V.
17-03-18 06:37:51.854 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30551 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30552 (-135.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30541 (-135.7 uncal um), Max = 30559 (-135.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:37:51.854 -07 000000455 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30551, posNoise = 8, negNoise = 10
17-03-18 06:37:51.854 -07 000000455 INF: Z Motor: After move to -0.136603, error = 0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:51.854 -07 000000455 INF: Z Motor: Settle wait time = 2434 ms, measure time = 104 ms (allowed 150 ms), total time = 2538 ms
17-03-18 06:37:51.854 -07 000000455 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:37:51.874 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:37:51.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:37:51.904 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4588 ms
17-03-18 06:37:51.904 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:37:51.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:51.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:51.904 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:51.904 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:51.904 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:37:51.904 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:51.904 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:37:51.904 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:37:51.914 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:37:51.914 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:37:51.924 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:37:51.924 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:37:51.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:37:51.974 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:37:52.274 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:37:52.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:37:52.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:37:52.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:37:52.314 -07 000000447 INF: FPGA: Recv @CAMSNAP 383
17-03-18 06:37:52.314 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 06:37:52.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 387 ms overall
17-03-18 06:37:52.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:37:52.394 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:52.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:37:52.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:37:52.414 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:52.414 -07 000000455 INF: Autofocus start
17-03-18 06:37:52.414 -07 000000455 INF: MeasureProfile start
17-03-18 06:37:52.414 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:52.424 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:37:52.424 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:37:52.434 -07 000000455 INF: MeasureProfile done
17-03-18 06:37:52.434 -07 000000455 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:37:52.434 -07 000000455 INF: Autofocus finished
17-03-18 06:37:52.624 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:37:52.624 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:37:52.624 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.136589457154074. ----------
17-03-18 06:37:52.624 -07 000000610 INF: Cycle	151	Tile	12	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:37:52.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28336, sync = True, waitForSettling = True)
17-03-18 06:37:52.634 -07 000000610 INF: Z Motor: Moving to -0.129714 mm, started at -0.136589 mm, distance = 6.88 um
17-03-18 06:37:52.634 -07 000000610 INF: FPGA: Xmit ZDACW 28336\n [Z Motor]
17-03-18 06:37:52.634 -07 000000438 INF: FPGA: Recv ZDACW
17-03-18 06:37:52.644 -07 000000610 INF: FPGA: 'ZDACW 28336' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:37:52.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:52.644 -07 000000438 INF: FPGA: Recv ZDACR 28336
17-03-18 06:37:52.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:52.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:37:52.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:52.804 -07 000000501 INF: FPGA: Recv ZSGSRD 29473
17-03-18 06:37:52.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:52.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:52.814 -07 000000501 INF: FPGA: Recv ZSGSRD 29477
17-03-18 06:37:52.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:52.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:52.824 -07 000000447 INF: FPGA: Recv ZSGSRD 29480
17-03-18 06:37:52.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:52.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:52.834 -07 000000438 INF: FPGA: Recv ZSGSRD 29482
17-03-18 06:37:52.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:52.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:52.844 -07 000000501 INF: FPGA: Recv ZSGSRD 29488
17-03-18 06:37:52.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:52.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:52.854 -07 000000447 INF: FPGA: Recv ZSGSRD 29477
17-03-18 06:37:52.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:52.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:52.864 -07 000000438 INF: FPGA: Recv ZSGSRD 29482
17-03-18 06:37:52.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:52.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:52.874 -07 000000447 INF: FPGA: Recv ZSGSRD 29480
17-03-18 06:37:52.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:52.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:52.884 -07 000000480 INF: FPGA: Recv ZSGSRD 29480
17-03-18 06:37:52.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:52.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:37:52.894 -07 000000438 INF: FPGA: Recv ZSGSRD 29480
17-03-18 06:37:52.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:52.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:37:52.904 -07 000000447 INF: FPGA: Recv ZPIEZORD 24962
17-03-18 06:37:52.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:37:52.914 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.9 V.
17-03-18 06:37:52.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29480 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29480 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29473 (-128.9 uncal um), Max = 29488 (-129.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:37:52.914 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29480, posNoise = 8, negNoise = 7
17-03-18 06:37:52.914 -07 000000610 INF: Z Motor: After move to -0.129714, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:37:52.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:37:52.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:37:52.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:37:52.914 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:37:52.914 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:37:52.914 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:37:52.914 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:37:52.914 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:37:52.914 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:37:52.914 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:37:52.914 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:37:52.914 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:37:52.914 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:37:52.914 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:37:52.914 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:37:52.914 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:37:52.914 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:37:52.924 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:37:52.924 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:37:52.924 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:37:52.924 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:37:52.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28513 150\n [Camera]
17-03-18 06:37:53.134 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:37:53.594 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:37:53.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:37:53.594 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:53.594 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:53.594 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:37:53.974 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:37:53.974 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:37:53.974 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:53.974 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:53.974 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:37:53.984 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:37:53.984 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28513 848
17-03-18 06:37:53.984 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:37:53.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:37:53.994 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:53.994 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:53.994 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:37:54.384 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:37:54.384 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:37:54.384 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:54.394 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:54.394 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:37:54.404 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:37:54.404 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:37:54.404 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:37:54.404 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:37:54.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28513 150' command took 2 ms to send, 1467 ms to get response, and 1475 ms overall
17-03-18 06:37:54.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:37:54.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:37:54.404 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:37:54.414 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:37:54.414 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:37:54.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:37:54.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.129709125950248. ------
17-03-18 06:37:54.814 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 06:37:54.814 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:37:54.814 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:54.824 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:54.824 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:37:55.814 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:37:55.814 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:37:55.814 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:37:56.214 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 06:37:56.214 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:37:56.214 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:37:56.224 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:37:56.224 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:37:56.234 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:37:56.814 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:37:56.814 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 570 ms to get response, and 573 ms overall
17-03-18 06:37:56.814 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:37:56.814 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13616 mm
17-03-18 06:37:56.814 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:37:57.814 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:37:57.814 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:37:57.814 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 991 ms to get response, and 999 ms overall
17-03-18 06:37:57.814 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:37:57.814 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:37:57.814 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.003063,
17-03-18 06:37:57.814 -07 000000590 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 06:37:57.814 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29744, sync = True, waitForSettling = False)
17-03-18 06:37:57.814 -07 000000608 INF: Z Motor: Moving to -0.136159 mm, started at -0.129709 mm, distance = -6.45 um
17-03-18 06:37:57.824 -07 000000608 INF: FPGA: Xmit ZDACW 29744\n [Z Motor]
17-03-18 06:37:57.834 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:58.814 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:37:58.814 -07 000000461 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:37:58.814 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 970 ms to get response, and 997 ms overall
17-03-18 06:37:58.814 -07 000000590 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:58.814 -07 000000608 INF: FPGA: 'ZDACW 29744' command took 0 ms to send, 980 ms to get response, and 994 ms overall
17-03-18 06:37:58.814 -07 000000590 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:37:58.814 -07 000000590 INF: Y Motor: Moving 1354 steps-34
17-03-18 06:37:58.834 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:37:58.834 -07 000000382 INF: FPGA: Recv ZDACR 29744
17-03-18 06:37:58.844 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:37:58.844 -07 000000608 INF: Z Motor: MoveAbsStepped took 1024 ms (did NOT wait for settling yet))
17-03-18 06:37:58.854 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:37:59.224 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 06:37:59.224 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 411 ms overall
17-03-18 06:37:59.274 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:37:59.284 -07 000000608 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:37:59.294 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:37:59.294 -07 000000590 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:37:59.294 -07 000000590 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:37:59.294 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 412 ms, distance = 0.847 mm, average velocity = 2.055 mm/sec
17-03-18 06:38:00.244 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:00.244 -07 000000461 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:38:00.254 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:38:00.254 -07 000000590 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:00.284 -07 000000590 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:38:00.284 -07 000000590 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:38:00.284 -07 000000590 INF: Y Motor: Moved to 69.8623 after 2470 ms (table move)
17-03-18 06:38:00.284 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136159 mm (DAC = 29744)
17-03-18 06:38:00.284 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:00.284 -07 000000461 INF: FPGA: Recv ZSGSRD 30492
17-03-18 06:38:00.294 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:38:00.294 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:00.294 -07 000000608 INF: FPGA: Recv ZSGSRD 30484
17-03-18 06:38:00.304 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:00.304 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:00.304 -07 000000382 INF: FPGA: Recv ZSGSRD 30483
17-03-18 06:38:00.314 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:00.314 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:00.314 -07 000000626 INF: FPGA: Recv ZSGSRD 30478
17-03-18 06:38:00.324 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:00.324 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:00.324 -07 000000608 INF: FPGA: Recv ZSGSRD 30482
17-03-18 06:38:00.334 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:00.334 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:00.334 -07 000000382 INF: FPGA: Recv ZSGSRD 30484
17-03-18 06:38:00.344 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:00.344 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:00.344 -07 000000626 INF: FPGA: Recv ZSGSRD 30481
17-03-18 06:38:00.354 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:00.354 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:00.354 -07 000000590 INF: FPGA: Recv ZSGSRD 30490
17-03-18 06:38:00.364 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:00.364 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:00.364 -07 000000382 INF: FPGA: Recv ZSGSRD 30482
17-03-18 06:38:00.374 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:00.374 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:00.374 -07 000000461 INF: FPGA: Recv ZSGSRD 30488
17-03-18 06:38:00.384 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:00.384 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:00.384 -07 000000437 INF: FPGA: Recv ZPIEZORD 26266
17-03-18 06:38:00.394 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:38:00.394 -07 000000591 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.539 V. Piezo Error = -9.3 V.
17-03-18 06:38:00.394 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30484 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30484 (-135.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30478 (-135.3 uncal um), Max = 30492 (-135.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:38:00.394 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30484, posNoise = 8, negNoise = 6
17-03-18 06:38:00.394 -07 000000591 INF: Z Motor: After move to -0.136159, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:00.394 -07 000000591 INF: Z Motor: Settle wait time = 2470 ms, measure time = 104 ms (allowed 150 ms), total time = 2574 ms
17-03-18 06:38:00.394 -07 000000591 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:38:00.444 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3627 ms
17-03-18 06:38:00.444 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:38:00.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:00.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:00.444 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:00.444 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:00.444 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:38:00.444 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:00.444 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:38:00.444 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:38:00.444 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:38:00.454 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:38:00.464 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:38:00.464 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:38:00.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:38:00.514 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:38:00.814 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:38:00.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:38:00.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:38:00.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 597333880, 0x0, 559484976) start.
17-03-18 06:38:00.844 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:38:00.854 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 06:38:00.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:38:00.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 597333880, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:38:00.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:00.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:38:00.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:38:00.954 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:38:00.954 -07 000000461 INF: Autofocus start
17-03-18 06:38:00.954 -07 000000461 INF: MeasureProfile start
17-03-18 06:38:00.954 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:38:00.964 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:38:00.964 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:38:00.964 -07 000000461 INF: MeasureProfile done
17-03-18 06:38:00.964 -07 000000461 INF: X=-128  Z correction [um]=-0.6264838
17-03-18 06:38:00.964 -07 000000461 INF: Autofocus finished
17-03-18 06:38:01.164 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:38:01.164 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 06:38:01.164 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.136159034940576. ----------
17-03-18 06:38:01.164 -07 000000610 INF: Cycle	151	Tile	13	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:38:01.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28119, sync = True, waitForSettling = True)
17-03-18 06:38:01.174 -07 000000610 INF: Z Motor: Moving to -0.128721 mm, started at -0.136159 mm, distance = 7.44 um
17-03-18 06:38:01.174 -07 000000610 INF: FPGA: Xmit ZDACW 28119\n [Z Motor]
17-03-18 06:38:01.174 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:38:01.184 -07 000000610 INF: FPGA: 'ZDACW 28119' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:38:01.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:38:01.184 -07 000000591 INF: FPGA: Recv ZDACR 28119
17-03-18 06:38:01.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:01.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:38:01.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:01.344 -07 000000590 INF: FPGA: Recv ZSGSRD 29336
17-03-18 06:38:01.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:38:01.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:01.354 -07 000000590 INF: FPGA: Recv ZSGSRD 29332
17-03-18 06:38:01.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:01.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:01.364 -07 000000608 INF: FPGA: Recv ZSGSRD 29320
17-03-18 06:38:01.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:01.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:01.374 -07 000000590 INF: FPGA: Recv ZSGSRD 29325
17-03-18 06:38:01.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:01.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:01.384 -07 000000590 INF: FPGA: Recv ZSGSRD 29331
17-03-18 06:38:01.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:01.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:01.394 -07 000000590 INF: FPGA: Recv ZSGSRD 29327
17-03-18 06:38:01.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:01.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:01.404 -07 000000608 INF: FPGA: Recv ZSGSRD 29330
17-03-18 06:38:01.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:01.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:01.414 -07 000000437 INF: FPGA: Recv ZSGSRD 29327
17-03-18 06:38:01.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:01.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:01.424 -07 000000437 INF: FPGA: Recv ZSGSRD 29330
17-03-18 06:38:01.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:01.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:01.434 -07 000000437 INF: FPGA: Recv ZSGSRD 29327
17-03-18 06:38:01.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:01.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:01.444 -07 000000437 INF: FPGA: Recv ZPIEZORD 24707
17-03-18 06:38:01.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:01.454 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -10.1 V.
17-03-18 06:38:01.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29328 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29328 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29320 (-127.9 uncal um), Max = 29336 (-128.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:38:01.454 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29328, posNoise = 8, negNoise = 8
17-03-18 06:38:01.454 -07 000000610 INF: Z Motor: After move to -0.128721, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:01.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:38:01.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:01.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:01.454 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:01.454 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:01.454 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:38:01.454 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:01.454 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:38:01.454 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:38:01.464 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:38:01.464 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:38:01.474 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:38:01.474 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:38:01.484 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:38:01.484 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:38:01.484 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:38:01.484 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:38:01.484 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:38:01.484 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:38:01.494 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:38:01.494 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:38:01.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28296 150\n [Camera]
17-03-18 06:38:01.694 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:38:01.874 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:38:01.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:38:02.164 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:38:02.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:38:02.164 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:02.164 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:02.164 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:38:02.544 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:38:02.544 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:38:02.544 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:02.544 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:02.544 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:38:02.554 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:38:02.554 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28296 848
17-03-18 06:38:02.554 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:38:02.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:38:02.554 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:02.674 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:02.674 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:38:03.054 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:38:03.054 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:38:03.054 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:03.054 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:03.064 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-18 06:38:03.064 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:38:03.064 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:38:03.064 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:38:03.064 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:38:03.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28296 150' command took 2 ms to send, 1559 ms to get response, and 1571 ms overall
17-03-18 06:38:03.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:38:03.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:38:03.074 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:03.074 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:03.074 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:38:03.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:38:03.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.1287326457047. ------
17-03-18 06:38:03.464 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:38:03.464 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:38:03.464 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:03.464 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:38:03.464 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:38:03.484 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:03.484 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:03.484 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:38:03.484 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13502 mm
17-03-18 06:38:03.484 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:38:03.484 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:38:03.484 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:38:03.484 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29496, sync = True, waitForSettling = False)
17-03-18 06:38:03.484 -07 000000480 INF: Z Motor: Moving to -0.135024 mm, started at -0.128733 mm, distance = -6.29 um
17-03-18 06:38:03.484 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:38:03.494 -07 000000447 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 06:38:03.494 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:38:03.494 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:03.494 -07 000000561 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:38:03.504 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:03.504 -07 000000447 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:03.504 -07 000000447 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:38:03.504 -07 000000447 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:38:03.504 -07 000000480 INF: FPGA: Xmit ZDACW 29496\n [Z Motor]
17-03-18 06:38:03.504 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:38:03.514 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:38:03.514 -07 000000480 INF: FPGA: 'ZDACW 29496' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:38:03.524 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:38:03.534 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:38:03.534 -07 000000591 INF: FPGA: Recv ZDACR 29496
17-03-18 06:38:03.544 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:38:03.544 -07 000000480 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:38:03.714 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:38:03.714 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:38:03.864 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:38:03.864 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:38:03.864 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:03.864 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:03.874 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:38:03.894 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 06:38:03.894 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:38:03.954 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:03.964 -07 000000480 INF: FPGA: Recv YRDPOS 144767
17-03-18 06:38:03.964 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:38:03.964 -07 000000447 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:03.964 -07 000000447 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:38:03.964 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 06:38:04.524 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.02213,
17-03-18 06:38:04.914 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:04.914 -07 000000591 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:38:04.924 -07 000000447 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:38:04.924 -07 000000447 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:04.954 -07 000000447 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:38:04.954 -07 000000447 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:38:04.954 -07 000000447 INF: Y Motor: Moved to 70.6875 after 1462 ms (table move)
17-03-18 06:38:04.954 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135024 mm (DAC = 29496)
17-03-18 06:38:04.954 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:04.954 -07 000000512 INF: FPGA: Recv ZSGSRD 30312
17-03-18 06:38:04.964 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:38:04.964 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:04.964 -07 000000437 INF: FPGA: Recv ZSGSRD 30304
17-03-18 06:38:04.974 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:04.974 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:04.974 -07 000000447 INF: FPGA: Recv ZSGSRD 30301
17-03-18 06:38:04.984 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:04.984 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:04.984 -07 000000437 INF: FPGA: Recv ZSGSRD 30309
17-03-18 06:38:04.994 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:04.994 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:04.994 -07 000000480 INF: FPGA: Recv ZSGSRD 30303
17-03-18 06:38:05.004 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:05.004 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:05.004 -07 000000382 INF: FPGA: Recv ZSGSRD 30310
17-03-18 06:38:05.014 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:05.014 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:05.014 -07 000000569 INF: FPGA: Recv ZSGSRD 30311
17-03-18 06:38:05.024 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:05.024 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:05.024 -07 000000437 INF: FPGA: Recv ZSGSRD 30308
17-03-18 06:38:05.034 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:05.034 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:05.034 -07 000000591 INF: FPGA: Recv ZSGSRD 30314
17-03-18 06:38:05.044 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:05.044 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:05.044 -07 000000512 INF: FPGA: Recv ZSGSRD 30301
17-03-18 06:38:05.054 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:05.054 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:05.054 -07 000000455 INF: FPGA: Recv ZPIEZORD 26085
17-03-18 06:38:05.064 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:05.064 -07 000000438 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -9.3 V.
17-03-18 06:38:05.064 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30307 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30308 (-134.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30301 (-134.2 uncal um), Max = 30314 (-134.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:38:05.064 -07 000000438 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30307, posNoise = 7, negNoise = 6
17-03-18 06:38:05.064 -07 000000438 INF: Z Motor: After move to -0.135024, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:05.064 -07 000000438 INF: Z Motor: Settle wait time = 1467 ms, measure time = 105 ms (allowed 150 ms), total time = 1572 ms
17-03-18 06:38:05.064 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:38:05.114 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 06:38:05.114 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:38:05.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:05.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:05.114 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:05.114 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:05.124 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:38:05.124 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:05.124 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:38:05.124 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:38:05.124 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:38:05.124 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:38:05.134 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:38:05.134 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:38:05.144 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:38:05.184 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:38:05.484 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:38:05.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:38:05.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:38:05.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:38:05.524 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:38:05.524 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:38:05.524 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall
17-03-18 06:38:05.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:38:05.614 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:05.614 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:38:05.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:38:05.724 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:38:06.714 -07 000000501 INF: Autofocus start
17-03-18 06:38:06.714 -07 000000501 INF: MeasureProfile start
17-03-18 06:38:06.724 -07 000000501 INF: MeasureProfile done
17-03-18 06:38:06.724 -07 000000501 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:38:06.724 -07 000000501 INF: Autofocus finished
17-03-18 06:38:06.724 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:38:06.724 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 995 ms to get response, and 1002 ms overall
17-03-18 06:38:06.724 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:38:06.874 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:38:06.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:38:06.924 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:38:06.924 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 203 ms overall
17-03-18 06:38:06.934 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.135021949391484. ----------
17-03-18 06:38:06.934 -07 000000610 INF: Cycle	151	Tile	14	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:38:06.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28037, sync = True, waitForSettling = True)
17-03-18 06:38:06.934 -07 000000610 INF: Z Motor: Moving to -0.128345 mm, started at -0.135022 mm, distance = 6.68 um
17-03-18 06:38:06.934 -07 000000610 INF: FPGA: Xmit ZDACW 28037\n [Z Motor]
17-03-18 06:38:06.934 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:38:06.944 -07 000000610 INF: FPGA: 'ZDACW 28037' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:38:06.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:38:06.944 -07 000000501 INF: FPGA: Recv ZDACR 28037
17-03-18 06:38:06.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:06.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:38:07.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:07.104 -07 000000501 INF: FPGA: Recv ZSGSRD 29272
17-03-18 06:38:07.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:38:07.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:07.114 -07 000000501 INF: FPGA: Recv ZSGSRD 29273
17-03-18 06:38:07.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:07.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:07.124 -07 000000382 INF: FPGA: Recv ZSGSRD 29264
17-03-18 06:38:07.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:07.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:07.134 -07 000000382 INF: FPGA: Recv ZSGSRD 29266
17-03-18 06:38:07.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:07.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:07.144 -07 000000501 INF: FPGA: Recv ZSGSRD 29266
17-03-18 06:38:07.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:07.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:07.154 -07 000000382 INF: FPGA: Recv ZSGSRD 29265
17-03-18 06:38:07.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:07.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:07.164 -07 000000501 INF: FPGA: Recv ZSGSRD 29277
17-03-18 06:38:07.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:07.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:07.174 -07 000000382 INF: FPGA: Recv ZSGSRD 29269
17-03-18 06:38:07.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:07.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:07.184 -07 000000382 INF: FPGA: Recv ZSGSRD 29263
17-03-18 06:38:07.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:07.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:07.194 -07 000000382 INF: FPGA: Recv ZSGSRD 29274
17-03-18 06:38:07.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:07.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:07.204 -07 000000382 INF: FPGA: Recv ZPIEZORD 24701
17-03-18 06:38:07.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:07.214 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -10.0 V.
17-03-18 06:38:07.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29269 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29268 (-127.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29263 (-127.5 uncal um), Max = 29277 (-127.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:38:07.214 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29269, posNoise = 8, negNoise = 6
17-03-18 06:38:07.214 -07 000000610 INF: Z Motor: After move to -0.128345, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:07.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:38:07.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:07.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:07.214 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:07.214 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:07.214 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:38:07.214 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:07.214 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:38:07.214 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:38:07.214 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:38:07.214 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:38:07.214 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:38:07.214 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:38:07.224 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:38:07.224 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:38:07.224 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:38:07.224 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:38:07.234 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:38:07.234 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:38:07.244 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:38:07.244 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 06:38:07.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28214 150\n [Camera]
17-03-18 06:38:07.444 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:38:07.904 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:38:07.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:38:07.904 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:07.904 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:07.904 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:38:07.914 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:38:07.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:38:07.914 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:08.024 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:08.024 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) start.
17-03-18 06:38:08.104 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28214 848
17-03-18 06:38:08.244 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:38:08.304 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:38:08.304 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:38:08.304 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:08.304 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:08.304 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:38:08.414 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 06:38:08.414 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:38:08.414 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:08.414 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:38:08.424 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-18 06:38:08.474 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:38:08.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:38:08.474 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:08.474 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:38:08.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:38:08.474 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:08.484 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:08.484 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:38:08.484 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:08.484 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:38:08.664 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-18 06:38:08.664 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:38:08.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28214 150' command took 2 ms to send, 1415 ms to get response, and 1421 ms overall
17-03-18 06:38:08.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:38:08.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.128353617188336. ------
17-03-18 06:38:08.674 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:38:08.674 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13514 mm
17-03-18 06:38:08.674 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:38:08.674 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:38:08.674 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:38:08.674 -07 000000561 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 06:38:08.674 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 29522, sync = True, waitForSettling = False)
17-03-18 06:38:08.674 -07 000000447 INF: Z Motor: Moving to -0.135143 mm, started at -0.128354 mm, distance = -6.79 um
17-03-18 06:38:08.684 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:08.684 -07 000000447 INF: FPGA: Xmit ZDACW 29522\n [Z Motor]
17-03-18 06:38:08.684 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:38:08.694 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:08.694 -07 000000447 INF: FPGA: 'ZDACW 29522' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:38:08.694 -07 000000438 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:38:08.704 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:38:08.704 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:38:08.704 -07 000000561 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:08.704 -07 000000561 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:38:08.704 -07 000000561 INF: Y Motor: Moving 1352 steps-32
17-03-18 06:38:08.714 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:38:08.714 -07 000000480 INF: FPGA: Recv ZDACR 29522
17-03-18 06:38:08.724 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:38:08.724 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:38:08.724 -07 000000447 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 06:38:08.884 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:38:08.884 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:38:08.884 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:08.884 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:38:08.884 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:38:08.884 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:08.884 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:08.884 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:38:08.884 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:08.894 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:38:08.904 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:38:08.904 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:38:09.094 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 06:38:09.094 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:38:09.154 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:09.154 -07 000000626 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:38:09.164 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:09.164 -07 000000561 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:09.164 -07 000000561 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:38:09.164 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 06:38:09.904 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.047997,
17-03-18 06:38:10.114 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:10.814 -07 000000569 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:38:10.814 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 690 ms to get response, and 700 ms overall
17-03-18 06:38:10.814 -07 000000561 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:10.844 -07 000000561 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:38:10.844 -07 000000561 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:38:10.844 -07 000000561 INF: Y Motor: Moved to 71.5176 after 2169 ms (table move)
17-03-18 06:38:10.844 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135143 mm (DAC = 29522)
17-03-18 06:38:10.844 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:10.854 -07 000000561 INF: FPGA: Recv ZSGSRD 30332
17-03-18 06:38:10.854 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:38:10.854 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:10.854 -07 000000512 INF: FPGA: Recv ZSGSRD 30324
17-03-18 06:38:10.864 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:38:10.864 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:10.864 -07 000000447 INF: FPGA: Recv ZSGSRD 30321
17-03-18 06:38:10.874 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:10.874 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:10.874 -07 000000382 INF: FPGA: Recv ZSGSRD 30330
17-03-18 06:38:10.884 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:10.884 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:10.884 -07 000000480 INF: FPGA: Recv ZSGSRD 30331
17-03-18 06:38:10.894 -07 000000590 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:10.894 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:10.894 -07 000000447 INF: FPGA: Recv ZSGSRD 30324
17-03-18 06:38:10.904 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:10.904 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:10.904 -07 000000569 INF: FPGA: Recv ZSGSRD 30324
17-03-18 06:38:10.914 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:10.914 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:10.914 -07 000000447 INF: FPGA: Recv ZSGSRD 30325
17-03-18 06:38:10.924 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:10.924 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:10.924 -07 000000569 INF: FPGA: Recv ZSGSRD 30330
17-03-18 06:38:10.934 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:10.934 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:10.934 -07 000000561 INF: FPGA: Recv ZSGSRD 30325
17-03-18 06:38:10.944 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:10.944 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:10.944 -07 000000455 INF: FPGA: Recv ZPIEZORD 26114
17-03-18 06:38:10.954 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:10.954 -07 000000590 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.505 V. Piezo Error = -9.3 V.
17-03-18 06:38:10.954 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30327 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30325 (-134.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30321 (-134.3 uncal um), Max = 30332 (-134.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:38:10.954 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30327, posNoise = 5, negNoise = 6
17-03-18 06:38:10.954 -07 000000590 INF: Z Motor: After move to -0.135143, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:10.954 -07 000000590 INF: Z Motor: Settle wait time = 2172 ms, measure time = 102 ms (allowed 150 ms), total time = 2274 ms
17-03-18 06:38:10.954 -07 000000590 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:38:11.004 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2329 ms
17-03-18 06:38:11.004 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:38:11.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:11.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:11.004 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:11.004 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:38:11.004 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:11.004 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:11.004 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:38:11.004 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:38:11.014 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:38:11.014 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:38:11.014 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:38:11.014 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:38:11.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:38:11.064 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:38:11.364 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:38:11.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:38:11.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:38:11.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:38:11.404 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:38:11.404 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 06:38:11.404 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 06:38:11.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:38:11.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:11.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:38:11.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 06:38:11.604 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:38:11.604 -07 000000382 INF: Autofocus start
17-03-18 06:38:11.604 -07 000000382 INF: MeasureProfile start
17-03-18 06:38:11.604 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:38:11.614 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:38:11.614 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:38:11.614 -07 000000382 INF: MeasureProfile done
17-03-18 06:38:11.614 -07 000000382 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 06:38:11.614 -07 000000382 INF: Autofocus finished
17-03-18 06:38:11.814 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:38:11.814 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:38:11.814 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.13515043363432. ----------
17-03-18 06:38:11.814 -07 000000610 INF: Cycle	151	Tile	15	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:38:11.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28000, sync = True, waitForSettling = True)
17-03-18 06:38:11.824 -07 000000610 INF: Z Motor: Moving to -0.128176 mm, started at -0.135150 mm, distance = 6.97 um
17-03-18 06:38:11.824 -07 000000610 INF: FPGA: Xmit ZDACW 28000\n [Z Motor]
17-03-18 06:38:11.824 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:38:11.834 -07 000000610 INF: FPGA: 'ZDACW 28000' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:38:11.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:38:11.834 -07 000000512 INF: FPGA: Recv ZDACR 28000
17-03-18 06:38:11.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:11.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:38:11.874 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:38:11.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:38:11.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:11.994 -07 000000590 INF: FPGA: Recv ZSGSRD 29242
17-03-18 06:38:12.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:38:12.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:12.004 -07 000000501 INF: FPGA: Recv ZSGSRD 29244
17-03-18 06:38:12.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:12.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:12.014 -07 000000590 INF: FPGA: Recv ZSGSRD 29246
17-03-18 06:38:12.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:12.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:12.024 -07 000000447 INF: FPGA: Recv ZSGSRD 29242
17-03-18 06:38:12.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:12.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:12.034 -07 000000455 INF: FPGA: Recv ZSGSRD 29243
17-03-18 06:38:12.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:12.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:12.044 -07 000000569 INF: FPGA: Recv ZSGSRD 29241
17-03-18 06:38:12.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:12.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:12.054 -07 000000455 INF: FPGA: Recv ZSGSRD 29244
17-03-18 06:38:12.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:12.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:12.064 -07 000000561 INF: FPGA: Recv ZSGSRD 29246
17-03-18 06:38:12.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:12.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:12.074 -07 000000455 INF: FPGA: Recv ZSGSRD 29235
17-03-18 06:38:12.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:12.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:12.084 -07 000000569 INF: FPGA: Recv ZSGSRD 29243
17-03-18 06:38:12.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:12.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:12.094 -07 000000455 INF: FPGA: Recv ZPIEZORD 24647
17-03-18 06:38:12.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:12.104 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -10.1 V.
17-03-18 06:38:12.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29243 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29243 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29235 (-127.4 uncal um), Max = 29246 (-127.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:38:12.104 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29243, posNoise = 3, negNoise = 8
17-03-18 06:38:12.104 -07 000000610 INF: Z Motor: After move to -0.128176, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:12.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:38:12.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:12.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:12.104 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:12.104 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:12.104 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:38:12.104 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:12.104 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:38:12.104 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:38:12.104 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:38:12.104 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:38:12.104 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:38:12.104 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:38:12.114 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:38:12.114 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:38:12.114 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:38:12.114 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:38:12.124 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:38:12.124 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:38:12.124 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:38:12.124 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:38:12.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28177 150\n [Camera]
17-03-18 06:38:12.324 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:38:12.794 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:38:12.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:38:12.794 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:12.794 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:12.794 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 648609776, 0x0, 391868352) start.
17-03-18 06:38:12.794 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:38:12.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:38:12.794 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:12.794 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:12.794 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:38:12.984 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28177 848
17-03-18 06:38:13.134 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:38:13.194 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 648609776, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:38:13.194 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:38:13.194 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:13.194 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:38:13.194 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:38:13.194 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:13.194 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:13.194 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:38:13.204 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:13.204 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:38:13.354 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:38:13.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:38:13.354 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:13.354 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:13.364 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:38:13.364 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:38:13.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:38:13.364 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:13.364 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:13.364 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:38:13.544 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-18 06:38:13.554 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:38:13.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28177 150' command took 2 ms to send, 1410 ms to get response, and 1420 ms overall
17-03-18 06:38:13.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:38:13.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.128186587672651. ------
17-03-18 06:38:13.554 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:38:13.554 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13455 mm
17-03-18 06:38:13.554 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:38:13.554 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:38:13.554 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:38:13.554 -07 000000382 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 06:38:13.554 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29392, sync = True, waitForSettling = False)
17-03-18 06:38:13.554 -07 000000455 INF: Z Motor: Moving to -0.134548 mm, started at -0.128187 mm, distance = -6.36 um
17-03-18 06:38:13.564 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:38:13.564 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:13.564 -07 000000626 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:38:13.574 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:38:13.694 -07 000000382 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:13.694 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:38:13.694 -07 000000382 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:38:13.694 -07 000000382 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:38:13.704 -07 000000455 INF: FPGA: Xmit ZDACW 29392\n [Z Motor]
17-03-18 06:38:13.704 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:38:13.714 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:38:13.714 -07 000000455 INF: FPGA: 'ZDACW 29392' command took 0 ms to send, 0 ms to get response, and 150 ms overall
17-03-18 06:38:13.724 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:38:13.724 -07 000000512 INF: FPGA: Recv ZDACR 29392
17-03-18 06:38:13.734 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:38:13.734 -07 000000455 INF: Z Motor: MoveAbsStepped took 170 ms (did NOT wait for settling yet))
17-03-18 06:38:13.764 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:38:13.764 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:38:13.764 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:13.764 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:38:13.764 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:38:13.764 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:13.764 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:13.774 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:38:13.774 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:38:13.774 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:38:13.894 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:38:13.894 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 333 ms overall
17-03-18 06:38:14.084 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:38:14.084 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:38:14.144 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:14.144 -07 000000561 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:38:14.154 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:14.154 -07 000000382 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:14.154 -07 000000382 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:38:14.154 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.156 mm/sec
17-03-18 06:38:15.104 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:15.104 -07 000000569 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:38:15.114 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:15.114 -07 000000382 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:15.144 -07 000000382 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:38:15.144 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:38:15.144 -07 000000382 INF: Y Motor: Moved to 72.3481 after 1589 ms (table move)
17-03-18 06:38:15.154 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134548 mm (DAC = 29392)
17-03-18 06:38:15.154 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:15.154 -07 000000626 INF: FPGA: Recv ZSGSRD 30238
17-03-18 06:38:15.164 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:38:15.164 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:15.164 -07 000000382 INF: FPGA: Recv ZSGSRD 30230
17-03-18 06:38:15.174 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:15.174 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:15.174 -07 000000382 INF: FPGA: Recv ZSGSRD 30222
17-03-18 06:38:15.184 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:15.184 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:15.184 -07 000000382 INF: FPGA: Recv ZSGSRD 30234
17-03-18 06:38:15.194 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:15.194 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:15.194 -07 000000382 INF: FPGA: Recv ZSGSRD 30238
17-03-18 06:38:15.204 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:15.204 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:15.204 -07 000000626 INF: FPGA: Recv ZSGSRD 30231
17-03-18 06:38:15.214 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:15.214 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:15.214 -07 000000626 INF: FPGA: Recv ZSGSRD 30238
17-03-18 06:38:15.224 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:15.224 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:15.224 -07 000000626 INF: FPGA: Recv ZSGSRD 30231
17-03-18 06:38:15.234 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:15.234 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:15.234 -07 000000626 INF: FPGA: Recv ZSGSRD 30232
17-03-18 06:38:15.244 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:15.244 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:15.244 -07 000000626 INF: FPGA: Recv ZSGSRD 30232
17-03-18 06:38:15.254 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:15.254 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:15.254 -07 000000626 INF: FPGA: Recv ZPIEZORD 26015
17-03-18 06:38:15.264 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:15.264 -07 000000447 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.485 V. Piezo Error = -9.3 V.
17-03-18 06:38:15.264 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30233 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30232 (-133.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30222 (-133.7 uncal um), Max = 30238 (-133.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:38:15.264 -07 000000447 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30233, posNoise = 5, negNoise = 11
17-03-18 06:38:15.264 -07 000000447 INF: Z Motor: After move to -0.134548, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:15.264 -07 000000447 INF: Z Motor: Settle wait time = 1592 ms, measure time = 109 ms (allowed 150 ms), total time = 1701 ms
17-03-18 06:38:15.264 -07 000000447 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 06:38:15.314 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1753 ms
17-03-18 06:38:15.314 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:38:15.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:15.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:15.314 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:15.314 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:15.324 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:38:15.324 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:15.324 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:38:15.324 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:38:15.324 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:38:15.324 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:38:15.334 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:38:15.334 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:38:15.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:38:15.374 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:38:15.674 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:38:15.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:38:15.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:38:15.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:38:15.714 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:38:15.714 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 06:38:15.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:38:15.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:38:15.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:15.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:38:15.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:38:15.814 -07 000000447 INF: Autofocus start
17-03-18 06:38:15.814 -07 000000447 INF: MeasureProfile start
17-03-18 06:38:15.824 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:38:15.824 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:38:15.824 -07 000000447 INF: MeasureProfile done
17-03-18 06:38:15.824 -07 000000447 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:38:15.824 -07 000000447 INF: Autofocus finished
17-03-18 06:38:15.834 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:38:15.834 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:38:16.034 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:38:16.034 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:38:16.034 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.134546557692994. ----------
17-03-18 06:38:16.044 -07 000000610 INF: Cycle	151	Tile	16	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:38:16.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27933, sync = True, waitForSettling = True)
17-03-18 06:38:16.044 -07 000000610 INF: Z Motor: Moving to -0.127869 mm, started at -0.134547 mm, distance = 6.68 um
17-03-18 06:38:16.044 -07 000000610 INF: FPGA: Xmit ZDACW 27933\n [Z Motor]
17-03-18 06:38:16.044 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:38:16.054 -07 000000610 INF: FPGA: 'ZDACW 27933' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:38:16.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:38:16.054 -07 000000591 INF: FPGA: Recv ZDACR 27933
17-03-18 06:38:16.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:16.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:38:16.134 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.028963,
17-03-18 06:38:16.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:16.214 -07 000000382 INF: FPGA: Recv ZSGSRD 29194
17-03-18 06:38:16.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:38:16.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:16.224 -07 000000590 INF: FPGA: Recv ZSGSRD 29200
17-03-18 06:38:16.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:38:16.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:16.234 -07 000000437 INF: FPGA: Recv ZSGSRD 29194
17-03-18 06:38:16.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:16.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:16.244 -07 000000591 INF: FPGA: Recv ZSGSRD 29189
17-03-18 06:38:16.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:16.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:16.254 -07 000000590 INF: FPGA: Recv ZSGSRD 29196
17-03-18 06:38:16.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:16.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:16.264 -07 000000455 INF: FPGA: Recv ZSGSRD 29192
17-03-18 06:38:16.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:16.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:16.274 -07 000000590 INF: FPGA: Recv ZSGSRD 29192
17-03-18 06:38:16.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:16.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:16.284 -07 000000455 INF: FPGA: Recv ZSGSRD 29193
17-03-18 06:38:16.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:16.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:16.294 -07 000000501 INF: FPGA: Recv ZSGSRD 29194
17-03-18 06:38:16.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:16.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:16.304 -07 000000569 INF: FPGA: Recv ZSGSRD 29195
17-03-18 06:38:16.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:16.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:16.314 -07 000000569 INF: FPGA: Recv ZPIEZORD 24702
17-03-18 06:38:16.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:16.324 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -9.9 V.
17-03-18 06:38:16.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29194 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29194 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29189 (-127.1 uncal um), Max = 29200 (-127.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:38:16.324 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29194, posNoise = 6, negNoise = 5
17-03-18 06:38:16.324 -07 000000610 INF: Z Motor: After move to -0.127869, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:16.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:38:16.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:16.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:16.324 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:16.324 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:16.324 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:38:16.324 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:38:16.324 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:38:16.324 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:16.324 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:38:16.324 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:38:16.324 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:38:16.324 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:38:16.324 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:38:16.324 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:38:16.334 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:38:16.334 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:38:16.344 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:38:16.344 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:38:16.344 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:38:16.344 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:38:16.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28110 150\n [Camera]
17-03-18 06:38:16.554 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 06:38:16.874 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:38:16.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:38:17.014 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:38:17.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:38:17.014 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:17.014 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:38:17.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:38:17.014 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:17.014 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:17.014 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:38:17.014 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:17.014 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:38:17.204 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28110 848
17-03-18 06:38:17.354 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:38:17.414 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:38:17.414 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:38:17.414 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:17.414 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:38:17.414 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:38:17.414 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:17.414 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:17.414 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:38:17.424 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:17.424 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:38:17.574 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:38:17.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:38:17.584 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:38:17.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:38:17.584 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:17.584 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:17.584 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:17.584 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:38:17.584 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:17.584 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:38:17.764 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-18 06:38:17.764 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:38:17.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28110 150' command took 2 ms to send, 1409 ms to get response, and 1421 ms overall
17-03-18 06:38:17.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:38:17.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.127871801277704. ------
17-03-18 06:38:17.774 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:38:17.774 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13433 mm
17-03-18 06:38:17.774 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:38:17.774 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:38:17.774 -07 000000512 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 06:38:17.774 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29344, sync = True, waitForSettling = False)
17-03-18 06:38:17.774 -07 000000501 INF: Z Motor: Moving to -0.134328 mm, started at -0.127872 mm, distance = -6.46 um
17-03-18 06:38:17.774 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:38:17.784 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:38:17.784 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:17.784 -07 000000437 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:38:17.794 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:38:17.794 -07 000000512 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:17.794 -07 000000501 INF: FPGA: Xmit ZDACW 29344\n [Z Motor]
17-03-18 06:38:17.794 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:38:17.794 -07 000000512 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:38:17.794 -07 000000512 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:38:17.804 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:38:17.804 -07 000000501 INF: FPGA: 'ZDACW 29344' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:38:17.814 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:38:17.824 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:38:17.824 -07 000000437 INF: FPGA: Recv ZDACR 29344
17-03-18 06:38:17.834 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:38:17.834 -07 000000501 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 06:38:17.984 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:38:17.984 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:38:17.984 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:17.984 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:38:17.984 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:38:17.984 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:17.994 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:38:17.994 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:38:17.994 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:38:17.994 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:38:18.004 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:38:18.004 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:38:18.184 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:38:18.184 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 06:38:18.244 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:18.244 -07 000000382 INF: FPGA: Recv YRDPOS 149861
17-03-18 06:38:18.254 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:18.254 -07 000000512 INF: Y Motor: Encoder = 149861 = motor step 117078.9 = 73.1743 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:18.254 -07 000000512 INF: Y Motor: Position error before settling (table move) = -37 encoder counts (-0.018 mm)
17-03-18 06:38:18.254 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.160 mm/sec
17-03-18 06:38:19.204 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:19.204 -07 000000382 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:38:19.214 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:19.214 -07 000000512 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:19.244 -07 000000512 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:38:19.244 -07 000000512 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:38:19.244 -07 000000512 INF: Y Motor: Moved to 73.1748 after 1467 ms (table move)
17-03-18 06:38:19.244 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134328 mm (DAC = 29344)
17-03-18 06:38:19.244 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:19.254 -07 000000590 INF: FPGA: Recv ZSGSRD 30201
17-03-18 06:38:19.254 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:38:19.254 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:19.254 -07 000000561 INF: FPGA: Recv ZSGSRD 30195
17-03-18 06:38:19.264 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:38:19.264 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:19.264 -07 000000590 INF: FPGA: Recv ZSGSRD 30200
17-03-18 06:38:19.274 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:19.274 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:19.274 -07 000000591 INF: FPGA: Recv ZSGSRD 30204
17-03-18 06:38:19.284 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:19.284 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:19.284 -07 000000590 INF: FPGA: Recv ZSGSRD 30199
17-03-18 06:38:19.294 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:19.294 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:19.294 -07 000000437 INF: FPGA: Recv ZSGSRD 30202
17-03-18 06:38:19.304 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:19.304 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:19.304 -07 000000561 INF: FPGA: Recv ZSGSRD 30199
17-03-18 06:38:19.314 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:19.314 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:19.314 -07 000000591 INF: FPGA: Recv ZSGSRD 30201
17-03-18 06:38:19.324 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:19.324 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:19.324 -07 000000501 INF: FPGA: Recv ZSGSRD 30194
17-03-18 06:38:19.334 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:19.334 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:19.334 -07 000000437 INF: FPGA: Recv ZSGSRD 30198
17-03-18 06:38:19.344 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:19.344 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:19.344 -07 000000590 INF: FPGA: Recv ZPIEZORD 26015
17-03-18 06:38:19.354 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:19.354 -07 000000569 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -9.2 V.
17-03-18 06:38:19.354 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30199 (-133.5 uncal um), Error = 0.8 uncal um, Median = 30200 (-133.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30194 (-133.5 uncal um), Max = 30204 (-133.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:38:19.354 -07 000000569 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30199, posNoise = 5, negNoise = 5
17-03-18 06:38:19.354 -07 000000569 INF: Z Motor: After move to -0.134328, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:19.354 -07 000000569 INF: Z Motor: Settle wait time = 1470 ms, measure time = 102 ms (allowed 150 ms), total time = 1572 ms
17-03-18 06:38:19.354 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:38:19.404 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 06:38:19.404 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:38:19.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:19.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:19.404 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:19.404 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:38:19.404 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:19.404 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:19.404 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:38:19.404 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:38:19.414 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:38:19.414 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:38:19.414 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:38:19.414 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:38:19.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:38:19.464 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:38:19.764 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:38:19.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:38:19.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:38:19.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 597333880, 0x0, 559484976) start.
17-03-18 06:38:19.804 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:38:19.804 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:38:19.804 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:38:19.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 597333880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:38:19.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:19.884 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:38:19.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:38:19.904 -07 000000569 INF: Autofocus start
17-03-18 06:38:19.904 -07 000000569 INF: MeasureProfile start
17-03-18 06:38:19.904 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:38:19.904 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:38:19.914 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:38:19.914 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:38:19.914 -07 000000569 INF: MeasureProfile done
17-03-18 06:38:19.914 -07 000000569 INF: X=10  Z correction [um]=0.02415557
17-03-18 06:38:19.914 -07 000000569 INF: Autofocus finished
17-03-18 06:38:20.114 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:38:20.114 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 06:38:20.114 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.134328134480174. ----------
17-03-18 06:38:20.114 -07 000000610 INF: Cycle	151	Tile	17	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:38:20.124 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27862, sync = True, waitForSettling = True)
17-03-18 06:38:20.124 -07 000000610 INF: Z Motor: Moving to -0.127544 mm, started at -0.134328 mm, distance = 6.78 um
17-03-18 06:38:20.124 -07 000000610 INF: FPGA: Xmit ZDACW 27862\n [Z Motor]
17-03-18 06:38:20.124 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 06:38:20.134 -07 000000610 INF: FPGA: 'ZDACW 27862' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:38:20.134 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:38:20.134 -07 000000561 INF: FPGA: Recv ZDACR 27862
17-03-18 06:38:20.144 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:20.144 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:38:20.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:20.294 -07 000000438 INF: FPGA: Recv ZSGSRD 29143
17-03-18 06:38:20.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:20.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:20.364 -07 000000591 INF: FPGA: Recv ZSGSRD 29146
17-03-18 06:38:20.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 37 ms to send, 0 ms to get response, and 60 ms overall
17-03-18 06:38:20.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:20.374 -07 000000590 INF: FPGA: Recv ZSGSRD 29145
17-03-18 06:38:20.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:38:20.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:20.384 -07 000000569 INF: FPGA: Recv ZSGSRD 29146
17-03-18 06:38:20.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:20.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:20.414 -07 000000561 INF: FPGA: Recv ZSGSRD 29147
17-03-18 06:38:20.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:38:20.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:20.424 -07 000000512 INF: FPGA: Recv ZSGSRD 29141
17-03-18 06:38:20.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:20.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:20.434 -07 000000561 INF: FPGA: Recv ZSGSRD 29142
17-03-18 06:38:20.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:20.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:20.444 -07 000000382 INF: FPGA: Recv ZSGSRD 29149
17-03-18 06:38:20.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:20.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:20.454 -07 000000590 INF: FPGA: Recv ZSGSRD 29150
17-03-18 06:38:20.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:20.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:20.464 -07 000000606 INF: FPGA: Recv ZSGSRD 29145
17-03-18 06:38:20.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:20.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:20.474 -07 000000606 INF: FPGA: Recv ZPIEZORD 24609
17-03-18 06:38:20.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:20.484 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.251 V. Piezo Error = -9.9 V.
17-03-18 06:38:20.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29145 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29146 (-126.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29141 (-126.8 uncal um), Max = 29150 (-126.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:38:20.484 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29145, posNoise = 5, negNoise = 4
17-03-18 06:38:20.484 -07 000000610 INF: Z Motor: After move to -0.127544, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:20.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 359 ms)
17-03-18 06:38:20.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:20.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:20.484 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:20.484 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:38:20.484 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:38:20.484 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:38:20.484 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:20.484 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:20.484 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:38:20.484 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:38:20.484 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:38:20.484 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:38:20.484 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:38:20.484 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:38:20.494 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:38:20.494 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:38:20.504 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:38:20.504 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:38:20.504 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:38:20.504 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:38:20.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28039 150\n [Camera]
17-03-18 06:38:20.704 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:38:21.174 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:38:21.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:38:21.174 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:21.174 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:21.174 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:38:21.174 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:38:21.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:38:21.174 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:21.304 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:21.304 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:38:21.364 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28039 848
17-03-18 06:38:21.514 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:38:21.574 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:38:21.574 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:38:21.574 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:21.574 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:21.574 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:38:21.614 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.005817,
17-03-18 06:38:21.694 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:38:21.694 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:38:21.694 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:21.694 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:38:21.704 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 06:38:21.734 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:38:21.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:38:21.744 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:21.744 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:38:21.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:38:21.744 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:21.744 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:21.744 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:38:21.744 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:21.744 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:38:21.874 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:38:21.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:38:21.934 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:38:21.934 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:38:21.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28039 150' command took 2 ms to send, 1411 ms to get response, and 1421 ms overall
17-03-18 06:38:21.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:38:21.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.127557014882758. ------
17-03-18 06:38:21.934 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:38:21.934 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13345 mm
17-03-18 06:38:21.934 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:38:21.944 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:38:21.944 -07 000000606 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 06:38:21.944 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:21.944 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:38:21.944 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:38:21.944 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29152, sync = True, waitForSettling = False)
17-03-18 06:38:21.944 -07 000000569 INF: Z Motor: Moving to -0.133449 mm, started at -0.127557 mm, distance = -5.89 um
17-03-18 06:38:21.944 -07 000000591 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:38:21.954 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:38:21.954 -07 000000606 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:21.954 -07 000000606 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:38:21.954 -07 000000606 INF: Y Motor: Moving 1356 steps-37
17-03-18 06:38:21.954 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:38:21.964 -07 000000569 INF: FPGA: Xmit ZDACW 29152\n [Z Motor]
17-03-18 06:38:21.964 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:38:21.974 -07 000000569 INF: FPGA: 'ZDACW 29152' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:38:21.974 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:38:21.984 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:38:21.984 -07 000000382 INF: FPGA: Recv ZDACR 29152
17-03-18 06:38:21.994 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:38:21.994 -07 000000569 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 06:38:22.144 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:38:22.144 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:38:22.144 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:22.144 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:22.144 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:38:22.144 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:38:22.144 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:22.154 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:22.154 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:38:22.154 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:38:22.154 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 06:38:22.154 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:38:22.354 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:38:22.354 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 06:38:22.394 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:22.394 -07 000000382 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:38:22.404 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:38:22.404 -07 000000606 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:22.404 -07 000000606 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:38:22.404 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.848 mm, average velocity = 2.125 mm/sec
17-03-18 06:38:23.354 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:23.354 -07 000000501 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:38:23.364 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:38:23.364 -07 000000606 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:23.384 -07 000000606 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:38:23.384 -07 000000606 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:38:23.384 -07 000000606 INF: Y Motor: Moved to 74.0068 after 1443 ms (table move)
17-03-18 06:38:23.384 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133449 mm (DAC = 29152)
17-03-18 06:38:23.384 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:23.394 -07 000000382 INF: FPGA: Recv ZSGSRD 30065
17-03-18 06:38:23.394 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:38:23.394 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:23.394 -07 000000437 INF: FPGA: Recv ZSGSRD 30068
17-03-18 06:38:23.404 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:38:23.404 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:23.404 -07 000000382 INF: FPGA: Recv ZSGSRD 30064
17-03-18 06:38:23.414 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:23.414 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:23.414 -07 000000437 INF: FPGA: Recv ZSGSRD 30063
17-03-18 06:38:23.424 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:23.424 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:23.424 -07 000000608 INF: FPGA: Recv ZSGSRD 30065
17-03-18 06:38:23.434 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:23.434 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:23.434 -07 000000512 INF: FPGA: Recv ZSGSRD 30060
17-03-18 06:38:23.444 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:23.444 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:23.444 -07 000000382 INF: FPGA: Recv ZSGSRD 30071
17-03-18 06:38:23.454 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:23.454 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:23.454 -07 000000501 INF: FPGA: Recv ZSGSRD 30061
17-03-18 06:38:23.464 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:23.464 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:23.464 -07 000000382 INF: FPGA: Recv ZSGSRD 30061
17-03-18 06:38:23.474 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:23.474 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:23.474 -07 000000437 INF: FPGA: Recv ZSGSRD 30064
17-03-18 06:38:23.484 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:23.484 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:23.484 -07 000000606 INF: FPGA: Recv ZPIEZORD 25878
17-03-18 06:38:23.494 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:23.494 -07 000000590 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.448 V. Piezo Error = -9.2 V.
17-03-18 06:38:23.494 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30064 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30064 (-132.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30060 (-132.6 uncal um), Max = 30071 (-132.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:38:23.494 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30064, posNoise = 7, negNoise = 4
17-03-18 06:38:23.494 -07 000000590 INF: Z Motor: After move to -0.133449, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:23.494 -07 000000590 INF: Z Motor: Settle wait time = 1445 ms, measure time = 102 ms (allowed 150 ms), total time = 1547 ms
17-03-18 06:38:23.494 -07 000000590 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:38:23.544 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 06:38:23.544 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:38:23.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:23.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:23.544 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:23.544 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:23.544 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:38:23.544 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:23.554 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:38:23.554 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:38:23.554 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:38:23.554 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:38:23.564 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:38:23.564 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:38:23.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:38:23.604 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:38:23.904 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:38:23.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:38:23.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:38:23.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:38:23.944 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:38:23.954 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 06:38:23.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 06:38:24.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:38:24.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:24.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:38:24.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:38:24.054 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:38:24.054 -07 000000512 INF: Autofocus start
17-03-18 06:38:24.054 -07 000000512 INF: MeasureProfile start
17-03-18 06:38:24.054 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:38:24.064 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:38:24.064 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:38:24.064 -07 000000512 INF: MeasureProfile done
17-03-18 06:38:24.064 -07 000000512 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:38:24.064 -07 000000512 INF: Autofocus finished
17-03-18 06:38:24.264 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:38:24.264 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:38:24.264 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.133460865841036. ----------
17-03-18 06:38:24.264 -07 000000610 INF: Cycle	151	Tile	18	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:38:24.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27692, sync = True, waitForSettling = True)
17-03-18 06:38:24.274 -07 000000610 INF: Z Motor: Moving to -0.126766 mm, started at -0.133461 mm, distance = 6.70 um
17-03-18 06:38:24.274 -07 000000610 INF: FPGA: Xmit ZDACW 27692\n [Z Motor]
17-03-18 06:38:24.274 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:38:24.284 -07 000000610 INF: FPGA: 'ZDACW 27692' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:24.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:38:24.284 -07 000000438 INF: FPGA: Recv ZDACR 27692
17-03-18 06:38:24.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:24.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:38:24.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:24.444 -07 000000382 INF: FPGA: Recv ZSGSRD 29021
17-03-18 06:38:24.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:38:24.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:24.454 -07 000000512 INF: FPGA: Recv ZSGSRD 29024
17-03-18 06:38:24.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:24.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:24.464 -07 000000606 INF: FPGA: Recv ZSGSRD 29021
17-03-18 06:38:24.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:24.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:24.474 -07 000000590 INF: FPGA: Recv ZSGSRD 29020
17-03-18 06:38:24.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:24.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:24.484 -07 000000382 INF: FPGA: Recv ZSGSRD 29020
17-03-18 06:38:24.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:24.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:24.494 -07 000000590 INF: FPGA: Recv ZSGSRD 29025
17-03-18 06:38:24.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:24.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:24.504 -07 000000501 INF: FPGA: Recv ZSGSRD 29020
17-03-18 06:38:24.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:24.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:24.514 -07 000000382 INF: FPGA: Recv ZSGSRD 29024
17-03-18 06:38:24.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:24.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:24.524 -07 000000512 INF: FPGA: Recv ZSGSRD 29019
17-03-18 06:38:24.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:24.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:24.534 -07 000000501 INF: FPGA: Recv ZSGSRD 29021
17-03-18 06:38:24.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:24.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:24.544 -07 000000606 INF: FPGA: Recv ZPIEZORD 24471
17-03-18 06:38:24.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:24.554 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.226 V. Piezo Error = -10.0 V.
17-03-18 06:38:24.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.8 um, Read 10 ADC samples: Avg = 29022 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29021 (-126.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29019 (-126.0 uncal um), Max = 29025 (-126.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:38:24.554 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29022, posNoise = 3, negNoise = 3
17-03-18 06:38:24.554 -07 000000610 INF: Z Motor: After move to -0.126766, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:24.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:38:24.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:24.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:24.554 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:24.554 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:24.554 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:38:24.554 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:24.554 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:38:24.554 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:38:24.554 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:38:24.554 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:38:24.554 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:38:24.554 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:38:24.564 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:38:24.564 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:38:24.564 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:38:24.564 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:38:24.574 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:38:24.574 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:38:24.584 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:38:24.584 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:38:24.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 27869 150\n [Camera]
17-03-18 06:38:24.784 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:38:25.254 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:38:25.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:38:25.254 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:25.254 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:25.254 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:38:25.254 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:38:25.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:38:25.254 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:25.374 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:25.374 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) start.
17-03-18 06:38:25.444 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27869 848
17-03-18 06:38:25.594 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:38:25.644 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:38:25.644 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:38:25.644 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:25.644 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:25.644 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:38:25.764 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:38:25.764 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:38:25.764 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:25.764 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:25.774 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-18 06:38:25.814 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:38:25.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:38:25.814 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:25.814 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:38:25.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:38:25.814 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:25.824 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:25.824 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:38:25.824 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:25.824 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:38:26.004 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:38:26.004 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:38:26.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 27869 150' command took 2 ms to send, 1416 ms to get response, and 1421 ms overall
17-03-18 06:38:26.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:38:26.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.126766836789321. ------
17-03-18 06:38:26.014 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:38:26.014 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13323 mm
17-03-18 06:38:26.014 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:38:26.014 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:38:26.014 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:38:26.014 -07 000000438 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 06:38:26.014 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29105, sync = True, waitForSettling = False)
17-03-18 06:38:26.014 -07 000000501 INF: Z Motor: Moving to -0.133234 mm, started at -0.126767 mm, distance = -6.47 um
17-03-18 06:38:26.024 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:38:26.024 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:26.024 -07 000000512 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:38:26.034 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:38:26.034 -07 000000438 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:26.034 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:38:26.034 -07 000000438 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:38:26.034 -07 000000438 INF: Y Motor: Moving 1352 steps-32
17-03-18 06:38:26.044 -07 000000501 INF: FPGA: Xmit ZDACW 29105\n [Z Motor]
17-03-18 06:38:26.044 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:38:26.054 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:38:26.054 -07 000000501 INF: FPGA: 'ZDACW 29105' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 06:38:26.064 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:38:26.064 -07 000000512 INF: FPGA: Recv ZDACR 29105
17-03-18 06:38:26.074 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:38:26.074 -07 000000501 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:38:26.214 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:38:26.214 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:38:26.214 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:26.224 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:38:26.224 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:38:26.224 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:26.224 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:26.224 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:26.224 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:38:26.224 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:38:26.234 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:38:26.234 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:38:26.424 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 06:38:26.424 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 06:38:26.464 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:26.464 -07 000000626 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:38:26.474 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:26.474 -07 000000438 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:26.474 -07 000000438 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 06:38:26.474 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.147 mm/sec
17-03-18 06:38:26.874 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:38:26.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 150. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:38:26.974 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.016692,
17-03-18 06:38:27.424 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:27.424 -07 000000626 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:38:27.434 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:38:27.434 -07 000000438 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:27.454 -07 000000438 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:38:27.454 -07 000000438 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:38:27.454 -07 000000438 INF: Y Motor: Moved to 74.8306 after 1433 ms (table move)
17-03-18 06:38:27.454 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133234 mm (DAC = 29105)
17-03-18 06:38:27.454 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:27.454 -07 000000480 INF: FPGA: Recv ZSGSRD 30031
17-03-18 06:38:27.464 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:38:27.464 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:27.464 -07 000000480 INF: FPGA: Recv ZSGSRD 30024
17-03-18 06:38:27.474 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:27.474 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:27.474 -07 000000480 INF: FPGA: Recv ZSGSRD 30032
17-03-18 06:38:27.484 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:27.484 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:27.484 -07 000000480 INF: FPGA: Recv ZSGSRD 30032
17-03-18 06:38:27.494 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:27.494 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:27.494 -07 000000480 INF: FPGA: Recv ZSGSRD 30035
17-03-18 06:38:27.504 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:27.504 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:27.504 -07 000000480 INF: FPGA: Recv ZSGSRD 30030
17-03-18 06:38:27.514 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:27.514 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:27.514 -07 000000480 INF: FPGA: Recv ZSGSRD 30031
17-03-18 06:38:27.524 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:27.524 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:27.524 -07 000000480 INF: FPGA: Recv ZSGSRD 30028
17-03-18 06:38:27.534 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:27.534 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:27.534 -07 000000480 INF: FPGA: Recv ZSGSRD 30028
17-03-18 06:38:27.544 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:27.544 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:27.544 -07 000000590 INF: FPGA: Recv ZSGSRD 30028
17-03-18 06:38:27.554 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:27.554 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:27.554 -07 000000590 INF: FPGA: Recv ZPIEZORD 25817
17-03-18 06:38:27.564 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:27.564 -07 000000606 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.3 V.
17-03-18 06:38:27.564 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30030 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30030 (-132.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30024 (-132.4 uncal um), Max = 30035 (-132.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:38:27.564 -07 000000606 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30030, posNoise = 5, negNoise = 6
17-03-18 06:38:27.564 -07 000000606 INF: Z Motor: After move to -0.133234, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:27.564 -07 000000606 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-18 06:38:27.564 -07 000000606 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:38:27.614 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 06:38:27.614 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:38:27.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:27.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:27.614 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:27.614 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:27.614 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:38:27.614 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:27.614 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:38:27.614 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:38:27.624 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:38:27.624 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:38:27.624 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:38:27.624 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:38:27.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:38:27.674 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:38:27.974 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:38:27.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:38:27.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:38:27.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 06:38:28.014 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:38:28.014 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:38:28.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:38:28.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:38:28.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:28.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:38:28.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:38:28.114 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:38:28.114 -07 000000437 INF: Autofocus start
17-03-18 06:38:28.114 -07 000000437 INF: MeasureProfile start
17-03-18 06:38:28.114 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:38:28.124 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:38:28.124 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:38:28.124 -07 000000437 INF: MeasureProfile done
17-03-18 06:38:28.124 -07 000000437 INF: X=-18  Z correction [um]=-0.09102372
17-03-18 06:38:28.124 -07 000000437 INF: Autofocus finished
17-03-18 06:38:28.324 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:38:28.324 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 205 ms overall
17-03-18 06:38:28.324 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.133242442628217. ----------
17-03-18 06:38:28.334 -07 000000610 INF: Cycle	151	Tile	19	Exposure Settings		A	463	G	223	T	223	C	463
17-03-18 06:38:28.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27598, sync = True, waitForSettling = True)
17-03-18 06:38:28.334 -07 000000610 INF: Z Motor: Moving to -0.126336 mm, started at -0.133242 mm, distance = 6.91 um
17-03-18 06:38:28.334 -07 000000610 INF: FPGA: Xmit ZDACW 27598\n [Z Motor]
17-03-18 06:38:28.334 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:38:28.344 -07 000000610 INF: FPGA: 'ZDACW 27598' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:38:28.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:38:28.344 -07 000000480 INF: FPGA: Recv ZDACR 27598
17-03-18 06:38:28.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:28.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:38:28.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:28.504 -07 000000438 INF: FPGA: Recv ZSGSRD 28954
17-03-18 06:38:28.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:38:28.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:28.514 -07 000000382 INF: FPGA: Recv ZSGSRD 28954
17-03-18 06:38:28.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:28.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:28.524 -07 000000438 INF: FPGA: Recv ZSGSRD 28953
17-03-18 06:38:28.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:28.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:28.534 -07 000000382 INF: FPGA: Recv ZSGSRD 28957
17-03-18 06:38:28.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:28.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:28.544 -07 000000501 INF: FPGA: Recv ZSGSRD 28956
17-03-18 06:38:28.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:28.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:28.554 -07 000000461 INF: FPGA: Recv ZSGSRD 28957
17-03-18 06:38:28.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:28.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:28.564 -07 000000501 INF: FPGA: Recv ZSGSRD 28955
17-03-18 06:38:28.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:28.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:28.574 -07 000000606 INF: FPGA: Recv ZSGSRD 28955
17-03-18 06:38:28.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:28.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:28.584 -07 000000512 INF: FPGA: Recv ZSGSRD 28952
17-03-18 06:38:28.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:38:28.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:38:28.594 -07 000000438 INF: FPGA: Recv ZSGSRD 28952
17-03-18 06:38:28.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:28.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:38:28.604 -07 000000382 INF: FPGA: Recv ZPIEZORD 24382
17-03-18 06:38:28.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:28.614 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.211 V. Piezo Error = -10.0 V.
17-03-18 06:38:28.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.3 um, Read 10 ADC samples: Avg = 28954 (-125.6 uncal um), Error = 0.8 uncal um, Median = 28954 (-125.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 28952 (-125.5 uncal um), Max = 28957 (-125.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:38:28.614 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28954, posNoise = 3, negNoise = 2
17-03-18 06:38:28.614 -07 000000610 INF: Z Motor: After move to -0.126336, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:38:28.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:38:28.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:38:28.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:38:28.614 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:38:28.614 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:38:28.614 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:38:28.614 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:38:28.614 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:38:28.614 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:38:28.614 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:38:28.614 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:38:28.614 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:38:28.614 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:38:28.624 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:38:28.624 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:38:28.624 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:38:28.624 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:38:28.634 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:38:28.634 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:38:28.634 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:38:28.634 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:38:28.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 27774 150\n [Camera]
17-03-18 06:38:28.834 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:38:29.294 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-18 06:38:29.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-18 06:38:29.304 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:29.304 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:29.304 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:38:29.304 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-18 06:38:29.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-18 06:38:29.304 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:29.304 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:29.304 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:38:29.494 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27774 848
17-03-18 06:38:29.644 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-18 06:38:29.694 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:38:29.694 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:38:29.694 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:29.704 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:38:29.704 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:38:29.704 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:29.704 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:29.704 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:38:29.704 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:29.714 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:38:29.864 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-18 06:38:29.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-18 06:38:29.864 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:38:29.974 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-18 06:38:29.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-18 06:38:29.974 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:38:29.974 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:38:29.974 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:38:29.984 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:38:29.984 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) start.
17-03-18 06:38:30.054 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:38:30.054 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:38:30.054 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 27774 150' command took 2 ms to send, 1417 ms to get response, and 1421 ms overall
17-03-18 06:38:30.384 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 592928576, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:38:30.384 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:38:30.384 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:30.384 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:38:30.384 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:38:30.384 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:38:30.384 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:30.384 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:38:30.384 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 06:38:30.384 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:38:30.394 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:38:30.434 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:38:30.434 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:38:30.474 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:38:30.484 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-18 06:38:30.484 -07 000000610 INF: Imaging Cycle 151: ScanTilesCommand Cycle 151 time end. Duration was 186037 ms.
17-03-18 06:38:30.484 -07 000000610 INF: =================== Cycle #151 ===================
17-03-18 06:38:30.484 -07 000000610 INF: ===================  ===================
17-03-18 06:38:30.484 -07 000000590 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:38:30.494 -07 000000512 INF: FPGA: Recv EXLED1ADCR 24
17-03-18 06:38:30.494 -07 000000590 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:38:30.494 -07 000000590 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-18 06:38:30.494 -07 000000590 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 151, FrontChillerTemperature: 4.016692, FrontChillerHeatSinkTemperature: 0.247414, AmbientTemperature: 18.66502, FlowCellCompartmentTemperature: 21.99981, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.31502, GreenLEDSensorTemperature: 27.20245, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-18 06:38:30.604 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.