17-03-18 06:38:30.654 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:38:30.654 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 06:38:30.654 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8306 mm, delta = 0.5500 mm
17-03-18 06:38:30.654 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:30.664 -07 000000437 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:38:30.674 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:38:30.674 -07 000000610 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:30.674 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 06:38:30.674 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 06:38:30.674 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 06:38:30.794 -07 000000461 INF: FPGA: Recv YMVTO 154378 874
17-03-18 06:38:30.794 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 115 ms overall
17-03-18 06:38:30.794 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 06:38:30.794 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 879 steps, but required 874 steps (0.546 mm). Slippage = -0.003 mm (-0.01%).
17-03-18 06:38:30.794 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 115 ms, distance = 0.550 mm, average velocity = 4.783 mm/sec
17-03-18 06:38:31.874 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:38:31.874 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1983, R2=2062, Total=4045. Warn if over 250 bubbles per interval.
17-03-18 06:38:32.334 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.990831,
17-03-18 06:38:33.794 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:38:33.794 -07 000000461 INF: FPGA: Recv YRDPOS 154380
17-03-18 06:38:33.804 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:33.804 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:38:33.834 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:38:33.834 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-18 06:38:33.834 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3174 ms
17-03-18 06:38:33.834 -07 000000610 INF: =================== Cycle #152, Flow Cell Temp 60° ===================
17-03-18 06:38:33.844 -07 000000610 INF: =================== Cycle #152, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 06:38:33.844 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 06:38:33.844 -07 000000437 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:38:33.854 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:33.854 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:38:33.854 -07 000000382 INF: FPGA: Recv TEC2EN 
17-03-18 06:38:33.864 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:38:33.864 -07 000000610 INF: =================== Cycle #152, Flow Cell Temp 60° ===================
17-03-18 06:38:33.864 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:38:33.864 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:38:33.864 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:38:33.894 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:38:33.894 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 06:38:33.894 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:38:34.194 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:38:34.214 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:38:34.214 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:38:34.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:38:34.284 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:38:34.284 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:38:34.384 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:38:34.384 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:38:34.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:38:34.414 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:38:34.414 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:38:34.414 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:38:34.544 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:38:34.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:38:36.884 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 06:38:36.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1985, R2=2064, Total=4049. Warn if over 250 bubbles per interval.
17-03-18 06:38:37.694 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.993549,
17-03-18 06:38:37.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:38:37.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:38:38.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:38:38.194 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:38:38.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:38:38.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:38:38.644 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:38:38.644 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:38:38.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:38:38.804 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:38:38.804 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:38:38.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:38:38.964 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:38:38.964 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:38:38.964 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:38:39.094 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:38:39.124 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:38:39.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:38:39.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:38:39.584 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:38:39.584 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:38:40.804 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:38:40.804 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 06:38:40.804 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:38:40.824 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:38:40.824 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 06:38:40.824 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 06:38:40.964 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:38:40.984 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 06:38:40.984 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 06:38:41.034 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:38:41.054 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:38:41.054 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:38:41.154 -07 000000610 INF: =================== Cycle #152, Pumping Reagent CMS (4) ===================
17-03-18 06:38:41.154 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:38:41.154 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:38:41.184 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:38:41.184 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:38:41.184 -07 000000610 INF: =================== Cycle #152, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 06:38:41.314 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:38:41.354 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:38:41.884 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 3
17-03-18 06:38:41.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=3, R2=4, Total=7. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1988, R2=2068, Total=4056. Warn if over 250 bubbles per interval.
17-03-18 06:38:42.794 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:38:42.824 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:38:43.054 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.020806,
17-03-18 06:38:43.244 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:38:43.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:38:43.274 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:38:43.274 -07 000000610 INF: =================== Cycle #152, Pumping Reagent CMS (4) ===================
17-03-18 06:38:43.404 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:38:43.434 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:38:43.434 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:38:43.564 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:38:43.594 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:38:43.594 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:38:43.594 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:38:43.724 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:38:43.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:38:44.184 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:38:44.214 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:38:44.214 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:38:44.214 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:38:45.434 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:38:45.434 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:38:45.434 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:38:45.454 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:38:45.454 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 06:38:45.454 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 06:38:45.604 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:38:45.624 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 06:38:45.624 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 06:38:45.674 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:38:45.694 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:38:45.694 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:38:45.794 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:38:45.794 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:38:45.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:38:45.824 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:38:45.824 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:38:45.824 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:38:45.954 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:38:45.994 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:38:46.864 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:38:46.884 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 06:38:46.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1990, R2=2070, Total=4060. Warn if over 250 bubbles per interval.
17-03-18 06:38:46.894 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:38:46.894 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:38:46.894 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:38:47.024 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:38:47.054 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:38:47.054 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:38:47.184 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:38:47.214 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:38:47.214 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:38:47.214 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:38:47.344 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:38:47.374 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:38:47.804 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:38:47.834 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:38:47.834 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:38:47.834 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:38:47.834 -07 000000461 INF: WaitCommand(10000) start
17-03-18 06:38:47.834 -07 000000437 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:38:47.834 -07 000000437 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:38:48.414 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.02213,
17-03-18 06:38:49.054 -07 000000437 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:38:49.054 -07 000000437 INF: LanePump: Xmit /1?\r
17-03-18 06:38:49.084 -07 000000437 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:38:49.084 -07 000000437 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:38:49.214 -07 000000437 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:38:49.254 -07 000000437 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:38:50.784 -07 000000437 INF: LanePump: Xmit /1Q\r
17-03-18 06:38:50.814 -07 000000437 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:38:51.234 -07 000000437 INF: LanePump: Xmit /1Q\r
17-03-18 06:38:51.264 -07 000000437 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:38:51.264 -07 000000437 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:38:51.264 -07 000000437 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:38:51.264 -07 000000437 INF: ===================  ===================
17-03-18 06:38:51.884 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:38:51.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1990, R2=2071, Total=4061. Warn if over 250 bubbles per interval.
17-03-18 06:38:53.774 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.027603,
17-03-18 06:38:56.884 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:38:56.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1990, R2=2071, Total=4061. Warn if over 250 bubbles per interval.
17-03-18 06:38:57.844 -07 000000461 INF: WaitCommand(10000) end
17-03-18 06:38:57.844 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:38:57.844 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 06:38:57.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:38:57.884 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:38:57.884 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:38:57.884 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:38:58.014 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 06:38:58.054 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:38:59.134 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.993549,
17-03-18 06:39:01.884 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 06:39:01.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1991, R2=2072, Total=4063. Warn if over 250 bubbles per interval.
17-03-18 06:39:04.184 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:04.214 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:39:04.494 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.958108,
17-03-18 06:39:04.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:04.664 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:39:05.084 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:05.114 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:39:05.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:05.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:39:05.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:06.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:39:06.014 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 06:39:06.014 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:39:06.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:39:06.174 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:39:06.174 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:39:06.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:39:06.334 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:39:06.334 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:39:06.334 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:39:06.464 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:39:06.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:39:06.884 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 10 R1 9
17-03-18 06:39:06.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=9, R2=10, Total=19. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:39:06.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:06.954 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:39:06.954 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:39:06.954 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:39:08.174 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:39:08.174 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 06:39:08.174 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:39:08.194 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:39:08.194 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 06:39:08.194 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 06:39:08.404 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:39:08.424 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 06:39:08.424 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 06:39:08.474 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:39:08.494 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:39:08.494 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:39:08.594 -07 000000610 INF: =================== Cycle #152, Pumping Reagent IMT (1) ===================
17-03-18 06:39:08.594 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:39:08.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:39:08.624 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:39:08.624 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:39:08.624 -07 000000610 INF: =================== Cycle #152, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 06:39:08.754 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:39:08.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:39:09.854 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.99219,
17-03-18 06:39:10.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:10.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:39:10.684 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:10.714 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:39:10.714 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:39:10.714 -07 000000610 INF: =================== Cycle #152, Pumping Reagent IMT (1) ===================
17-03-18 06:39:10.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:39:10.874 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:39:10.874 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:39:11.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:39:11.034 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:39:11.034 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:39:11.034 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:39:11.164 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:39:11.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:39:11.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:11.654 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:39:11.654 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:39:11.654 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:39:11.884 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:39:11.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:39:12.874 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 06:39:12.874 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:39:12.874 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:39:12.894 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:39:12.894 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 06:39:12.894 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:39:13.124 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:39:13.144 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 06:39:13.144 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 06:39:13.194 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:39:13.214 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:39:13.214 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:39:13.314 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:39:13.314 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:39:13.314 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:39:13.344 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:39:13.344 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:39:13.344 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:39:13.474 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:39:13.514 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:39:14.384 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:14.414 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:39:14.414 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 06:39:14.414 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:39:14.544 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:39:14.574 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:39:14.574 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:39:14.704 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:39:14.734 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:39:14.734 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:39:14.734 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:39:14.864 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:39:14.894 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:39:15.214 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.000345,
17-03-18 06:39:15.324 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:15.354 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:39:15.354 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:39:15.354 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:39:15.354 -07 000000610 INF: =================== Cycle #152, Flow Cell Temp 65° ===================
17-03-18 06:39:15.354 -07 000000610 INF: =================== Cycle #152, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 06:39:15.354 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 06:39:15.354 -07 000000382 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:39:15.364 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:39:15.364 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:39:15.364 -07 000000512 INF: FPGA: Recv TEC2EN 
17-03-18 06:39:15.374 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:39:15.374 -07 000000610 INF: =================== Cycle #152, Flow Cell Temp 65° ===================
17-03-18 06:39:15.374 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:39:15.374 -07 000000610 INF: WaitCommand(30000) start
17-03-18 06:39:16.884 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:39:16.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:39:20.574 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.020806,
17-03-18 06:39:21.884 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:39:21.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:39:25.934 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.999021,
17-03-18 06:39:26.884 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:39:26.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:39:31.294 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.011254,
17-03-18 06:39:31.884 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:39:31.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:39:36.654 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.993549,
17-03-18 06:39:36.884 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:39:36.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:39:41.884 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:39:41.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:39:42.014 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.988112,
17-03-18 06:39:45.384 -07 000000610 INF: WaitCommand(30000) end
17-03-18 06:39:45.384 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:39:45.384 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 06:39:45.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:39:45.514 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:39:45.514 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:39:45.514 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:39:45.644 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 06:39:45.684 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:39:46.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:46.984 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:39:46.984 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:39:46.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:39:46.994 -07 000000610 INF: LanePump: Waited 1309 ms for pump motion to complete
17-03-18 06:39:46.994 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:39:47.124 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:39:47.154 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:39:47.154 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:39:47.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:39:47.314 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:39:47.314 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:39:47.314 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:39:47.374 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.96762,
17-03-18 06:39:47.444 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:39:47.474 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:39:47.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:47.934 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:39:47.934 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:39:47.934 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:39:47.934 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:39:47.934 -07 000000424 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:39:47.934 -07 000000502 INF: WaitCommand(30000) start
17-03-18 06:39:49.154 -07 000000424 INF: AsyncDelayTimer waited 1215ms
17-03-18 06:39:49.154 -07 000000424 INF: LanePump: Xmit /1?\r
17-03-18 06:39:49.184 -07 000000424 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:39:49.184 -07 000000424 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:39:49.314 -07 000000424 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:39:49.354 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:39:51.694 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:51.724 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:39:51.884 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:39:51.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:39:52.144 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-18 06:39:52.174 -07 000000424 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:39:52.174 -07 000000424 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 06:39:52.174 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:39:52.174 -07 000000424 INF: ===================  ===================
17-03-18 06:39:52.734 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.971733,
17-03-18 06:39:56.884 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:39:56.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:39:58.094 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.012614,
17-03-18 06:40:01.884 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:40:01.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:40:03.454 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.003063,
17-03-18 06:40:06.884 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:40:06.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:40:08.814 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.011254,
17-03-18 06:40:11.884 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:40:11.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:40:14.174 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.024884,
17-03-18 06:40:16.884 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:40:16.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:40:17.944 -07 000000502 INF: WaitCommand(30000) end
17-03-18 06:40:17.944 -07 000000610 INF: =================== Cycle #152, Flow Cell Temp 22° ===================
17-03-18 06:40:17.944 -07 000000610 INF: =================== Cycle #152, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 06:40:17.944 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 06:40:17.944 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:40:17.954 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:40:17.954 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:40:17.954 -07 000000487 INF: FPGA: Recv TEC2EN 
17-03-18 06:40:17.964 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:17.964 -07 000000610 INF: =================== Cycle #152, Flow Cell Temp 22° ===================
17-03-18 06:40:17.964 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:40:17.964 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:40:17.964 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:40:17.964 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:40:18.004 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:40:18.004 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:40:18.004 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:40:18.134 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:40:18.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:40:19.534 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.994908,
17-03-18 06:40:21.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:40:21.334 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:40:21.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:40:21.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:40:21.884 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:40:21.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:40:22.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:40:22.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:40:22.234 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:40:22.234 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:40:22.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:40:22.394 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:40:22.394 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:40:22.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:40:22.554 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:40:22.554 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:40:22.554 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:40:22.684 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:40:22.714 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:40:23.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:40:23.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:40:23.174 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:40:23.174 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:40:24.394 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:40:24.394 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 06:40:24.394 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:40:24.414 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:40:24.414 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 06:40:24.414 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 06:40:24.564 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:40:24.584 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:40:24.584 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:40:24.634 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:40:24.654 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:40:24.654 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:40:24.754 -07 000000610 INF: =================== Cycle #152, Pumping Reagent USM (2) ===================
17-03-18 06:40:24.754 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:40:24.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:40:24.784 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:40:24.784 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:40:24.784 -07 000000610 INF: =================== Cycle #152, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 06:40:24.894 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.99219,
17-03-18 06:40:24.914 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:40:24.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:40:26.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:40:26.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:40:26.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:40:26.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:40:26.874 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:40:26.874 -07 000000610 INF: =================== Cycle #152, Pumping Reagent USM (2) ===================
17-03-18 06:40:26.884 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:40:26.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:40:27.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:40:27.034 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:40:27.034 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:40:27.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:40:27.194 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:40:27.194 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:40:27.194 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:40:27.324 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:40:27.354 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:40:27.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:40:27.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:40:27.814 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:40:27.814 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:40:29.034 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:40:29.034 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:40:29.034 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:40:29.054 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:40:29.054 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 06:40:29.054 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:40:29.204 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:40:29.224 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:40:29.224 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:40:29.274 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:40:29.294 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:40:29.294 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:40:29.394 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:40:29.394 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:40:29.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:40:29.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:40:29.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:40:29.424 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:40:29.554 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:40:29.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:40:30.254 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.975845,
17-03-18 06:40:30.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:40:30.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:40:30.494 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:40:30.494 -07 000000610 INF: =================== Cycle #152, Pumping Reagent PR2 (3) ===================
17-03-18 06:40:30.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:40:30.654 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:40:30.654 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:40:30.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:40:30.814 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:40:30.814 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:40:30.814 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:40:30.944 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:40:30.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:40:31.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:40:31.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:40:31.434 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:40:31.434 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:40:31.434 -07 000000424 INF: WaitCommand(10000) start
17-03-18 06:40:31.434 -07 000000592 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:40:31.434 -07 000000592 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:40:31.884 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:40:31.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:40:32.654 -07 000000592 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:40:32.654 -07 000000592 INF: LanePump: Xmit /1?\r
17-03-18 06:40:32.684 -07 000000592 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:40:32.684 -07 000000592 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:40:32.814 -07 000000592 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:40:32.854 -07 000000592 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:40:34.384 -07 000000592 INF: LanePump: Xmit /1Q\r
17-03-18 06:40:34.414 -07 000000592 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:40:34.834 -07 000000592 INF: LanePump: Xmit /1Q\r
17-03-18 06:40:34.864 -07 000000592 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:40:34.864 -07 000000592 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:40:34.864 -07 000000592 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:40:34.864 -07 000000592 INF: ===================  ===================
17-03-18 06:40:35.614 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.005817,
17-03-18 06:40:36.884 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:40:36.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:40:40.974 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.015368,
17-03-18 06:40:41.444 -07 000000424 INF: WaitCommand(10000) end
17-03-18 06:40:41.444 -07 000000610 INF: =================== Cycle #152, Imaging ===================
17-03-18 06:40:41.444 -07 000000610 INF: Imaging Cycle 152: ScanTilesCommand Cycle 152 time start.
17-03-18 06:40:41.444 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 06:40:41.444 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:40:41.474 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:40:41.474 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 06:40:41.474 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 06:40:41.774 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:40:41.794 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:40:41.794 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:40:41.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:40:41.864 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:40:41.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:40:41.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:40:41.864 -07 000000461 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 06:40:41.864 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:40:41.864 -07 000000461 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 06:40:41.864 -07 000000487 INF: FPGA: Recv EXLED1ON 
17-03-18 06:40:41.874 -07 000000461 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:40:41.874 -07 000000461 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 06:40:41.874 -07 000000629 INF: FPGA: Recv EXLED1ADCR 23248
17-03-18 06:40:41.884 -07 000000461 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:41.884 -07 000000461 INF: RedLED: Using Red data: Photodiode ADC 23248 --> 7.5 mW (old method), or 206.0 mW (new method). Difference = 198.5 mW
17-03-18 06:40:41.884 -07 000000461 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 06:40:41.884 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:40:41.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:40:41.884 -07 000000487 INF: FPGA: Recv EXLED1OFF 
17-03-18 06:40:41.894 -07 000000461 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:41.894 -07 000000461 INF: RedLED: LED was on for 20 ms
17-03-18 06:40:41.894 -07 000000461 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 06:40:41.894 -07 000000461 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 06:40:41.894 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:40:41.894 -07 000000461 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 06:40:41.894 -07 000000502 INF: FPGA: Recv EXLED2ON 
17-03-18 06:40:41.904 -07 000000461 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:40:41.904 -07 000000461 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:40:41.904 -07 000000502 INF: FPGA: Recv EXLED1ADCR 2095
17-03-18 06:40:41.914 -07 000000461 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:41.914 -07 000000461 INF: GreenLED: Using Green data: Photodiode ADC 2095 --> 0.9 mW (old method), or 182.1 mW (new method). Difference = 181.2 mW
17-03-18 06:40:41.914 -07 000000461 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 06:40:41.914 -07 000000487 INF: FPGA: Recv EXLED2OFF 
17-03-18 06:40:41.924 -07 000000461 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:41.924 -07 000000461 INF: GreenLED: LED was on for 19 ms
17-03-18 06:40:41.924 -07 000000461 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 06:40:41.924 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:40:42.544 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-18 06:40:42.544 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 610 ms to get response, and 617 ms overall
17-03-18 06:40:42.544 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 06:40:43.044 -07 000000467 INF: FPGA: Recv EMOUT
17-03-18 06:40:43.044 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:40:43.044 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 06:40:43.044 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-18 06:40:43.054 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:40:43.054 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:40:43.054 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.126329990363682. ------
17-03-18 06:40:43.054 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:40:43.054 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17841 mm
17-03-18 06:40:43.054 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:40:43.054 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:40:43.054 -07 000000629 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-18 06:40:43.054 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38974, sync = True, waitForSettling = False)
17-03-18 06:40:43.054 -07 000000467 INF: Z Motor: Moving to -0.178412 mm, started at -0.126330 mm, distance = -52.08 um
17-03-18 06:40:43.054 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:40:43.064 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:40:43.064 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:40:43.064 -07 000000502 INF: FPGA: Recv YRDPOS 154379
17-03-18 06:40:43.074 -07 000000467 INF: FPGA: Xmit ZDACW 38974\n [Z Motor]
17-03-18 06:40:43.074 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:40:43.074 -07 000000629 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:40:43.074 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:40:43.074 -07 000000629 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 06:40:43.074 -07 000000629 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:40:43.084 -07 000000467 INF: FPGA: 'ZDACW 38974' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:40:43.084 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:40:43.094 -07 000000629 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:40:43.104 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:40:43.104 -07 000000502 INF: FPGA: Recv ZDACR 38974
17-03-18 06:40:43.114 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:40:43.114 -07 000000467 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:40:43.284 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:40:43.284 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:40:44.774 -07 000000467 INF: FPGA: Recv YMVTO 122702 24777
17-03-18 06:40:44.774 -07 000000629 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1704 ms overall
17-03-18 06:40:44.774 -07 000000629 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 06:40:44.774 -07 000000629 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 06:40:44.774 -07 000000629 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1704 ms, distance = 15.468 mm, average velocity = 9.078 mm/sec
17-03-18 06:40:46.334 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.994908,
17-03-18 06:40:46.884 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:40:46.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:40:47.624 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:40:47.624 -07 000000487 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:40:47.634 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:40:47.634 -07 000000629 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:40:47.664 -07 000000629 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:40:47.664 -07 000000629 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 06:40:47.664 -07 000000629 INF: Y Motor: Moved to 59.9097 after 4605 ms
17-03-18 06:40:47.664 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178412 mm (DAC = 38974)
17-03-18 06:40:47.664 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:47.674 -07 000000585 INF: FPGA: Recv ZSGSRD 37065
17-03-18 06:40:47.674 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:40:47.674 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:47.674 -07 000000629 INF: FPGA: Recv ZSGSRD 37061
17-03-18 06:40:47.684 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:40:47.684 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:47.684 -07 000000585 INF: FPGA: Recv ZSGSRD 37061
17-03-18 06:40:47.694 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:47.694 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:47.694 -07 000000629 INF: FPGA: Recv ZSGSRD 37059
17-03-18 06:40:47.704 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:47.704 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:47.704 -07 000000585 INF: FPGA: Recv ZSGSRD 37061
17-03-18 06:40:47.714 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:47.714 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:47.714 -07 000000487 INF: FPGA: Recv ZSGSRD 37060
17-03-18 06:40:47.724 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:47.724 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:47.724 -07 000000462 INF: FPGA: Recv ZSGSRD 37061
17-03-18 06:40:47.734 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:47.734 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:47.734 -07 000000592 INF: FPGA: Recv ZSGSRD 37062
17-03-18 06:40:47.744 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:47.744 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:47.744 -07 000000502 INF: FPGA: Recv ZSGSRD 37059
17-03-18 06:40:47.754 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:47.754 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:47.754 -07 000000629 INF: FPGA: Recv ZSGSRD 37063
17-03-18 06:40:47.764 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:47.764 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:40:47.764 -07 000000487 INF: FPGA: Recv ZPIEZORD 33285
17-03-18 06:40:47.774 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:47.774 -07 000000424 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -8.4 V.
17-03-18 06:40:47.774 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37061 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37061 (-177.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 37059 (-177.5 uncal um), Max = 37065 (-177.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:40:47.774 -07 000000424 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37061, posNoise = 4, negNoise = 2
17-03-18 06:40:47.774 -07 000000424 INF: Z Motor: After move to -0.178412, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:40:47.774 -07 000000424 INF: Z Motor: Settle wait time = 4608 ms, measure time = 103 ms (allowed 150 ms), total time = 4711 ms
17-03-18 06:40:47.774 -07 000000424 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:40:47.824 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-18 06:40:47.824 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:40:47.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:40:47.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:40:47.824 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:40:47.824 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:40:47.824 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:40:47.824 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:40:47.824 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:40:47.824 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:40:47.854 -07 000000592 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 06:40:47.854 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:40:47.854 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:40:47.854 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:40:47.864 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:40:47.864 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 06:40:47.874 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:40:47.914 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:40:48.214 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:40:48.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:40:48.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:40:48.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 06:40:48.254 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:40:48.254 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 06:40:48.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:40:48.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:40:48.344 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:48.344 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:40:48.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:40:48.454 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:40:48.454 -07 000000592 INF: Image SNR check: start
17-03-18 06:40:48.454 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:40:48.464 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:40:48.464 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:40:48.464 -07 000000592 INF: Image SNR check: pass  [peak (Max-Min)=126.97]
17-03-18 06:40:48.464 -07 000000592 INF: Autofocus start
17-03-18 06:40:48.464 -07 000000592 INF: MeasureProfile start
17-03-18 06:40:48.474 -07 000000592 INF: MeasureProfile done
17-03-18 06:40:48.474 -07 000000592 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:40:48.474 -07 000000592 INF: Autofocus finished
17-03-18 06:40:48.664 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:40:48.664 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:40:48.664 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178411078196938. ----------
17-03-18 06:40:48.664 -07 000000610 INF: Cycle	152	Tile	1	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:40:48.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37489, sync = True, waitForSettling = True)
17-03-18 06:40:48.674 -07 000000610 INF: Z Motor: Moving to -0.171614 mm, started at -0.178411 mm, distance = 6.80 um
17-03-18 06:40:48.674 -07 000000610 INF: FPGA: Xmit ZDACW 37489\n [Z Motor]
17-03-18 06:40:48.674 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:40:48.684 -07 000000610 INF: FPGA: 'ZDACW 37489' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:48.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:40:48.684 -07 000000487 INF: FPGA: Recv ZDACR 37489
17-03-18 06:40:48.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:48.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:40:48.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:48.844 -07 000000585 INF: FPGA: Recv ZSGSRD 36001
17-03-18 06:40:48.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:40:48.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:48.854 -07 000000487 INF: FPGA: Recv ZSGSRD 36009
17-03-18 06:40:48.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:48.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:48.864 -07 000000424 INF: FPGA: Recv ZSGSRD 36004
17-03-18 06:40:48.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:48.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:48.874 -07 000000502 INF: FPGA: Recv ZSGSRD 35999
17-03-18 06:40:48.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:48.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:48.884 -07 000000467 INF: FPGA: Recv ZSGSRD 36010
17-03-18 06:40:48.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:48.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:48.894 -07 000000502 INF: FPGA: Recv ZSGSRD 36007
17-03-18 06:40:48.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:40:48.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:48.904 -07 000000592 INF: FPGA: Recv ZSGSRD 36007
17-03-18 06:40:48.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:40:48.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:48.914 -07 000000502 INF: FPGA: Recv ZSGSRD 36007
17-03-18 06:40:48.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:48.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:48.924 -07 000000629 INF: FPGA: Recv ZSGSRD 36001
17-03-18 06:40:48.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:48.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:48.934 -07 000000487 INF: FPGA: Recv ZSGSRD 36005
17-03-18 06:40:48.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:48.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:40:48.944 -07 000000424 INF: FPGA: Recv ZPIEZORD 31874
17-03-18 06:40:48.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:48.954 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -9.1 V.
17-03-18 06:40:48.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36005 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36006 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35999 (-170.7 uncal um), Max = 36010 (-170.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:40:48.954 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36005, posNoise = 5, negNoise = 6
17-03-18 06:40:48.954 -07 000000610 INF: Z Motor: After move to -0.171614, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:40:48.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:40:48.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:40:48.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:40:48.954 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:40:48.954 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:40:48.954 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:40:48.954 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:40:48.954 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:40:48.954 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:40:48.954 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:40:48.954 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:40:48.954 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:40:48.954 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:40:48.954 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:40:48.954 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:40:48.974 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:40:48.974 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:40:48.974 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 06:40:48.974 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:40:48.984 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:40:48.984 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:40:48.994 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:40:48.994 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 42 ms.
17-03-18 06:40:48.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 37665 150\n [Camera]
17-03-18 06:40:49.194 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:40:49.664 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:40:49.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:40:49.664 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:40:49.664 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:40:49.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:40:49.664 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:40:49.674 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:40:49.674 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:40:49.674 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:40:49.674 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:40:49.854 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37665 849
17-03-18 06:40:50.004 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:40:50.064 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:40:50.064 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:40:50.064 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:50.074 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:40:50.074 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:40:50.074 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:40:50.074 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:40:50.074 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:50.074 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:40:50.084 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:40:50.224 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:40:50.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:40:50.234 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:40:50.354 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:40:50.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:40:50.354 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:40:50.364 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:40:50.364 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 06:40:50.364 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:40:50.364 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:40:50.424 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:40:50.424 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:40:50.424 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 37665 150' command took 2 ms to send, 1411 ms to get response, and 1421 ms overall
17-03-18 06:40:50.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:40:50.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171627110175238. ------
17-03-18 06:40:50.424 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:40:50.424 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17783 mm
17-03-18 06:40:50.424 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:40:50.424 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:40:50.434 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:40:50.434 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38847, sync = True, waitForSettling = False)
17-03-18 06:40:50.434 -07 000000629 INF: Z Motor: Moving to -0.177830 mm, started at -0.171627 mm, distance = -6.20 um
17-03-18 06:40:50.434 -07 000000629 INF: FPGA: Xmit ZDACW 38847\n [Z Motor]
17-03-18 06:40:50.434 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:40:50.434 -07 000000585 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 06:40:50.434 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:40:50.444 -07 000000629 INF: FPGA: 'ZDACW 38847' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:50.444 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:40:50.454 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:40:50.454 -07 000000467 INF: FPGA: Recv YRDPOS 122695
17-03-18 06:40:50.464 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:40:50.464 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:40:50.464 -07 000000585 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:40:50.464 -07 000000585 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:40:50.464 -07 000000585 INF: Y Motor: Moving 1333 steps1
17-03-18 06:40:50.464 -07 000000461 INF: FPGA: Recv ZDACR 38847
17-03-18 06:40:50.474 -07 000000629 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:40:50.474 -07 000000629 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 06:40:50.474 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:40:50.644 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:40:50.644 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:40:50.764 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:40:50.764 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:40:50.764 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:50.764 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:40:50.764 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:40:50.764 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:50.764 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:40:50.764 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-18 06:40:50.764 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:40:50.774 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 06:40:50.844 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:40:50.844 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 06:40:50.894 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:40:50.894 -07 000000424 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:40:50.904 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:40:50.904 -07 000000585 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:40:50.904 -07 000000585 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:40:50.904 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.833 mm, average velocity = 2.163 mm/sec
17-03-18 06:40:51.694 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.007176,
17-03-18 06:40:51.854 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:40:51.854 -07 000000424 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:40:51.864 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:51.864 -07 000000585 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:40:51.884 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:40:51.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:40:51.894 -07 000000585 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:40:51.894 -07 000000585 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:40:51.894 -07 000000585 INF: Y Motor: Moved to 60.7319 after 1464 ms (table move)
17-03-18 06:40:51.894 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177830 mm (DAC = 38847)
17-03-18 06:40:51.894 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:51.904 -07 000000462 INF: FPGA: Recv ZSGSRD 36970
17-03-18 06:40:51.904 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:40:51.904 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:51.904 -07 000000462 INF: FPGA: Recv ZSGSRD 36970
17-03-18 06:40:51.914 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:40:51.914 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:51.914 -07 000000461 INF: FPGA: Recv ZSGSRD 36971
17-03-18 06:40:51.924 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:51.924 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:51.924 -07 000000462 INF: FPGA: Recv ZSGSRD 36969
17-03-18 06:40:51.934 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:51.934 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:51.934 -07 000000424 INF: FPGA: Recv ZSGSRD 36970
17-03-18 06:40:51.944 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:51.944 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:51.944 -07 000000585 INF: FPGA: Recv ZSGSRD 36970
17-03-18 06:40:51.954 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:51.954 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:51.954 -07 000000424 INF: FPGA: Recv ZSGSRD 36970
17-03-18 06:40:51.964 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:51.964 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:51.964 -07 000000462 INF: FPGA: Recv ZSGSRD 36976
17-03-18 06:40:51.974 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:51.974 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:51.974 -07 000000585 INF: FPGA: Recv ZSGSRD 36974
17-03-18 06:40:51.984 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:51.984 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:51.984 -07 000000424 INF: FPGA: Recv ZSGSRD 36978
17-03-18 06:40:51.994 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:51.994 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:40:51.994 -07 000000461 INF: FPGA: Recv ZPIEZORD 33141
17-03-18 06:40:52.004 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:52.004 -07 000000592 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.5 V.
17-03-18 06:40:52.004 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36972 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36970 (-176.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36969 (-176.9 uncal um), Max = 36978 (-177.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:40:52.004 -07 000000592 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36972, posNoise = 6, negNoise = 3
17-03-18 06:40:52.004 -07 000000592 INF: Z Motor: After move to -0.177830, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:40:52.004 -07 000000592 INF: Z Motor: Settle wait time = 1468 ms, measure time = 102 ms (allowed 150 ms), total time = 1570 ms
17-03-18 06:40:52.004 -07 000000592 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:40:52.054 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 06:40:52.054 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:40:52.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:40:52.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:40:52.054 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:40:52.054 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:40:52.054 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:40:52.054 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:40:52.054 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:40:52.054 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:40:52.064 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:40:52.064 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:40:52.074 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:40:52.074 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:40:52.074 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:40:52.114 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:40:52.414 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:40:52.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:40:52.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:40:52.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) start.
17-03-18 06:40:52.454 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:40:52.454 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 06:40:52.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:40:52.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 06:40:52.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:52.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:40:52.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 06:40:52.654 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:40:52.654 -07 000000444 INF: Autofocus start
17-03-18 06:40:52.654 -07 000000444 INF: MeasureProfile start
17-03-18 06:40:52.654 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:40:52.664 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:40:52.664 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:40:52.664 -07 000000444 INF: MeasureProfile done
17-03-18 06:40:52.664 -07 000000444 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:40:52.664 -07 000000444 INF: Autofocus finished
17-03-18 06:40:52.864 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:40:52.864 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:40:52.864 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.177839323316321. ----------
17-03-18 06:40:52.864 -07 000000610 INF: Cycle	152	Tile	2	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:40:52.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37344, sync = True, waitForSettling = True)
17-03-18 06:40:52.874 -07 000000610 INF: Z Motor: Moving to -0.170950 mm, started at -0.177839 mm, distance = 6.89 um
17-03-18 06:40:52.874 -07 000000610 INF: FPGA: Xmit ZDACW 37344\n [Z Motor]
17-03-18 06:40:52.874 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:40:52.884 -07 000000610 INF: FPGA: 'ZDACW 37344' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:40:52.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:40:52.884 -07 000000487 INF: FPGA: Recv ZDACR 37344
17-03-18 06:40:52.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:52.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:40:53.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:53.044 -07 000000424 INF: FPGA: Recv ZSGSRD 35897
17-03-18 06:40:53.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:40:53.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:53.054 -07 000000424 INF: FPGA: Recv ZSGSRD 35905
17-03-18 06:40:53.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:53.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:53.064 -07 000000444 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:40:53.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:53.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:53.074 -07 000000585 INF: FPGA: Recv ZSGSRD 35899
17-03-18 06:40:53.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:53.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:53.084 -07 000000444 INF: FPGA: Recv ZSGSRD 35904
17-03-18 06:40:53.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:53.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:53.094 -07 000000461 INF: FPGA: Recv ZSGSRD 35902
17-03-18 06:40:53.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:53.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:53.104 -07 000000581 INF: FPGA: Recv ZSGSRD 35903
17-03-18 06:40:53.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:53.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:53.114 -07 000000474 INF: FPGA: Recv ZSGSRD 35900
17-03-18 06:40:53.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:53.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:53.124 -07 000000424 INF: FPGA: Recv ZSGSRD 35895
17-03-18 06:40:53.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:53.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:53.134 -07 000000462 INF: FPGA: Recv ZSGSRD 35901
17-03-18 06:40:53.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:53.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:40:53.144 -07 000000585 INF: FPGA: Recv ZPIEZORD 31721
17-03-18 06:40:53.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:53.154 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -9.2 V.
17-03-18 06:40:53.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35901 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35902 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35895 (-170.0 uncal um), Max = 35906 (-170.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:40:53.154 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35901, posNoise = 5, negNoise = 6
17-03-18 06:40:53.154 -07 000000610 INF: Z Motor: After move to -0.170950, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:40:53.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:40:53.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:40:53.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:40:53.154 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:40:53.154 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:40:53.154 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:40:53.154 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:40:53.154 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:40:53.154 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:40:53.154 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:40:53.154 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:40:53.154 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:40:53.154 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:40:53.164 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:40:53.164 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:40:53.164 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:40:53.164 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:40:53.174 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:40:53.174 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:40:53.174 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:40:53.174 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:40:53.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 37521 150\n [Camera]
17-03-18 06:40:53.384 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:40:53.844 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:40:53.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:40:53.844 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:40:53.844 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:40:53.844 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:40:53.844 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:40:53.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:40:53.844 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:40:53.964 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:40:53.964 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 06:40:54.034 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37521 849
17-03-18 06:40:54.184 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:40:54.234 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:40:54.234 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:40:54.234 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:54.244 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:40:54.244 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:40:54.354 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:40:54.354 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:40:54.354 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:54.364 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:40:54.364 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 06:40:54.404 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:40:54.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:40:54.414 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:40:54.414 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:40:54.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:40:54.414 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:40:54.414 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:40:54.414 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) start.
17-03-18 06:40:54.414 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:40:54.414 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:40:54.604 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:40:54.604 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:40:54.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 37521 150' command took 2 ms to send, 1412 ms to get response, and 1422 ms overall
17-03-18 06:40:54.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:40:54.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.170958992112495. ------
17-03-18 06:40:54.604 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:40:54.604 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17773 mm
17-03-18 06:40:54.604 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:40:54.614 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:40:54.614 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:40:54.614 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:40:54.614 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:40:54.614 -07 000000012 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 06:40:54.614 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38824, sync = True, waitForSettling = False)
17-03-18 06:40:54.614 -07 000000461 INF: Z Motor: Moving to -0.177725 mm, started at -0.170959 mm, distance = -6.77 um
17-03-18 06:40:54.624 -07 000000461 INF: FPGA: Xmit ZDACW 38824\n [Z Motor]
17-03-18 06:40:54.624 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:40:54.634 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:40:54.634 -07 000000461 INF: FPGA: 'ZDACW 38824' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:40:54.634 -07 000000474 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:40:54.644 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:40:54.644 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:40:54.644 -07 000000012 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:40:54.644 -07 000000474 INF: FPGA: Recv ZDACR 38824
17-03-18 06:40:54.644 -07 000000012 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:40:54.644 -07 000000012 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:40:54.654 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:40:54.654 -07 000000461 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:40:54.654 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:40:54.814 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:40:54.814 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:40:54.814 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:54.814 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:40:54.814 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:40:54.814 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:40:54.814 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:40:54.814 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:54.814 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:40:54.824 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:40:54.824 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:40:54.824 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:40:55.024 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 06:40:55.024 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 06:40:55.074 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:40:55.084 -07 000000444 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:40:55.084 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:40:55.084 -07 000000012 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:40:55.084 -07 000000012 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:40:55.084 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.841 mm, average velocity = 2.189 mm/sec
17-03-18 06:40:56.034 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:40:56.034 -07 000000585 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:40:56.044 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:56.044 -07 000000012 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:40:56.074 -07 000000012 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:40:56.074 -07 000000012 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:40:56.074 -07 000000012 INF: Y Motor: Moved to 61.5630 after 1457 ms (table move)
17-03-18 06:40:56.074 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177725 mm (DAC = 38824)
17-03-18 06:40:56.074 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:56.074 -07 000000576 INF: FPGA: Recv ZSGSRD 36957
17-03-18 06:40:56.084 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:40:56.084 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:56.084 -07 000000502 INF: FPGA: Recv ZSGSRD 36951
17-03-18 06:40:56.094 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:56.094 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:56.094 -07 000000592 INF: FPGA: Recv ZSGSRD 36958
17-03-18 06:40:56.104 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:56.104 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:56.104 -07 000000629 INF: FPGA: Recv ZSGSRD 36959
17-03-18 06:40:56.114 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:56.114 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:56.114 -07 000000629 INF: FPGA: Recv ZSGSRD 36952
17-03-18 06:40:56.124 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:56.124 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:56.124 -07 000000576 INF: FPGA: Recv ZSGSRD 36958
17-03-18 06:40:56.134 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:56.134 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:56.134 -07 000000629 INF: FPGA: Recv ZSGSRD 36952
17-03-18 06:40:56.144 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:56.144 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:56.144 -07 000000502 INF: FPGA: Recv ZSGSRD 36954
17-03-18 06:40:56.154 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:56.154 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:56.154 -07 000000502 INF: FPGA: Recv ZSGSRD 36955
17-03-18 06:40:56.164 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:40:56.164 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:56.164 -07 000000576 INF: FPGA: Recv ZSGSRD 36954
17-03-18 06:40:56.174 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:56.174 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:40:56.174 -07 000000502 INF: FPGA: Recv ZPIEZORD 33114
17-03-18 06:40:56.184 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:56.184 -07 000000424 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.924 V. Piezo Error = -8.5 V.
17-03-18 06:40:56.184 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36955 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36954 (-176.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36951 (-176.8 uncal um), Max = 36959 (-176.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:40:56.184 -07 000000424 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36955, posNoise = 4, negNoise = 4
17-03-18 06:40:56.184 -07 000000424 INF: Z Motor: After move to -0.177725, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:40:56.184 -07 000000424 INF: Z Motor: Settle wait time = 1460 ms, measure time = 105 ms (allowed 150 ms), total time = 1565 ms
17-03-18 06:40:56.184 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:40:56.234 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 06:40:56.234 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:40:56.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:40:56.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:40:56.234 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:40:56.234 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:40:56.234 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:40:56.234 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:40:56.234 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:40:56.234 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:40:56.234 -07 000000592 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:40:56.234 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:40:56.254 -07 000000592 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:40:56.254 -07 000000592 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:40:56.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:40:56.304 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:40:56.604 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:40:56.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:40:56.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:40:56.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 06:40:56.644 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:40:56.644 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:40:56.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:40:56.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 06:40:56.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:56.724 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:40:56.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 06:40:56.744 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:40:56.744 -07 000000576 INF: Autofocus start
17-03-18 06:40:56.744 -07 000000576 INF: MeasureProfile start
17-03-18 06:40:56.744 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:40:56.754 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:40:56.754 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:40:56.754 -07 000000576 INF: MeasureProfile done
17-03-18 06:40:56.754 -07 000000576 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:40:56.754 -07 000000576 INF: Autofocus finished
17-03-18 06:40:56.884 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:40:56.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:40:56.954 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:40:56.954 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:40:56.954 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177730111709911. ----------
17-03-18 06:40:56.954 -07 000000610 INF: Cycle	152	Tile	3	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:40:56.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37357, sync = True, waitForSettling = True)
17-03-18 06:40:56.964 -07 000000610 INF: Z Motor: Moving to -0.171009 mm, started at -0.177730 mm, distance = 6.72 um
17-03-18 06:40:56.964 -07 000000610 INF: FPGA: Xmit ZDACW 37357\n [Z Motor]
17-03-18 06:40:56.964 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:40:56.974 -07 000000610 INF: FPGA: 'ZDACW 37357' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:56.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:40:56.974 -07 000000462 INF: FPGA: Recv ZDACR 37357
17-03-18 06:40:56.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:56.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:40:57.054 -07 000000487 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.001704,
17-03-18 06:40:57.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:57.134 -07 000000462 INF: FPGA: Recv ZSGSRD 35912
17-03-18 06:40:57.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:40:57.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:57.144 -07 000000444 INF: FPGA: Recv ZSGSRD 35909
17-03-18 06:40:57.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:57.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:57.154 -07 000000581 INF: FPGA: Recv ZSGSRD 35913
17-03-18 06:40:57.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:57.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:57.164 -07 000000444 INF: FPGA: Recv ZSGSRD 35903
17-03-18 06:40:57.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:57.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:57.174 -07 000000502 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:40:57.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:57.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:57.184 -07 000000444 INF: FPGA: Recv ZSGSRD 35920
17-03-18 06:40:57.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:57.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:57.194 -07 000000581 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:40:57.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:57.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:57.204 -07 000000382 INF: FPGA: Recv ZSGSRD 35909
17-03-18 06:40:57.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:57.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:57.214 -07 000000581 INF: FPGA: Recv ZSGSRD 35915
17-03-18 06:40:57.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:57.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:40:57.224 -07 000000462 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:40:57.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:57.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:40:57.234 -07 000000382 INF: FPGA: Recv ZPIEZORD 31728
17-03-18 06:40:57.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:57.244 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.2 V.
17-03-18 06:40:57.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35911 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35911 (-170.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35903 (-170.1 uncal um), Max = 35920 (-170.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:40:57.244 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35911, posNoise = 9, negNoise = 8
17-03-18 06:40:57.244 -07 000000610 INF: Z Motor: After move to -0.171009, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:40:57.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:40:57.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:40:57.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:40:57.244 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:40:57.244 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:40:57.244 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:40:57.244 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:40:57.244 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:40:57.244 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:40:57.244 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:40:57.244 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:40:57.244 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:40:57.244 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:40:57.254 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:40:57.254 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:40:57.254 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:40:57.254 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:40:57.264 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:40:57.264 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:40:57.264 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:40:57.264 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:40:57.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 37534 150\n [Camera]
17-03-18 06:40:57.464 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:40:57.934 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 659
17-03-18 06:40:57.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 659
17-03-18 06:40:57.934 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:40:57.934 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:40:57.934 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 06:40:57.934 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 659
17-03-18 06:40:57.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 659
17-03-18 06:40:57.934 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:40:57.934 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:40:57.934 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 06:40:58.114 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37534 849
17-03-18 06:40:58.264 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:40:58.314 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:40:58.314 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:40:58.314 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:58.314 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:40:58.314 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:40:58.314 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:58.314 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:40:58.314 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:40:58.314 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:40:58.324 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:40:58.494 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:40:58.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:40:58.494 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:40:58.494 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:40:58.494 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:40:58.494 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:40:58.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:40:58.494 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:40:58.494 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:40:58.494 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:40:58.684 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:40:58.684 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:40:58.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 37534 150' command took 2 ms to send, 1414 ms to get response, and 1421 ms overall
17-03-18 06:40:58.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:40:58.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171023234233913. ------
17-03-18 06:40:58.694 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:40:58.694 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17727 mm
17-03-18 06:40:58.694 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:40:58.694 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:40:58.694 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:40:58.694 -07 000000012 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 06:40:58.694 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38725, sync = True, waitForSettling = False)
17-03-18 06:40:58.694 -07 000000382 INF: Z Motor: Moving to -0.177272 mm, started at -0.171023 mm, distance = -6.25 um
17-03-18 06:40:58.704 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:58.704 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:40:58.704 -07 000000487 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:40:58.714 -07 000000382 INF: FPGA: Xmit ZDACW 38725\n [Z Motor]
17-03-18 06:40:58.714 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:40:58.714 -07 000000012 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:40:58.714 -07 000000012 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:40:58.714 -07 000000012 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:40:58.714 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:40:58.724 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:40:58.724 -07 000000382 INF: FPGA: 'ZDACW 38725' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:40:58.734 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:40:58.744 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:40:58.744 -07 000000579 INF: FPGA: Recv ZDACR 38725
17-03-18 06:40:58.754 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:40:58.754 -07 000000382 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 06:40:58.884 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 06:40:58.884 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:40:58.884 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:58.884 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:40:58.884 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:40:58.884 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:40:58.884 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:40:58.894 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:40:58.894 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:40:58.894 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:40:58.924 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:40:58.924 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:40:59.104 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:40:59.104 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:40:59.164 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:40:59.164 -07 000000579 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:40:59.174 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:40:59.174 -07 000000012 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:40:59.174 -07 000000012 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:40:59.174 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 06:41:00.124 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:00.124 -07 000000462 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:41:00.134 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:00.134 -07 000000012 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:00.164 -07 000000012 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:00.164 -07 000000012 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:41:00.164 -07 000000012 INF: Y Motor: Moved to 62.3950 after 1467 ms (table move)
17-03-18 06:41:00.164 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177272 mm (DAC = 38725)
17-03-18 06:41:00.164 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:00.164 -07 000000576 INF: FPGA: Recv ZSGSRD 36888
17-03-18 06:41:00.174 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:41:00.174 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:00.174 -07 000000462 INF: FPGA: Recv ZSGSRD 36889
17-03-18 06:41:00.184 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:00.184 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:00.184 -07 000000592 INF: FPGA: Recv ZSGSRD 36880
17-03-18 06:41:00.194 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:00.194 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:00.194 -07 000000462 INF: FPGA: Recv ZSGSRD 36883
17-03-18 06:41:00.204 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:00.204 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:00.204 -07 000000592 INF: FPGA: Recv ZSGSRD 36879
17-03-18 06:41:00.214 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:00.214 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:00.214 -07 000000462 INF: FPGA: Recv ZSGSRD 36884
17-03-18 06:41:00.224 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:00.224 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:00.224 -07 000000592 INF: FPGA: Recv ZSGSRD 36888
17-03-18 06:41:00.234 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:00.234 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:00.234 -07 000000462 INF: FPGA: Recv ZSGSRD 36884
17-03-18 06:41:00.244 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:00.244 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:00.244 -07 000000462 INF: FPGA: Recv ZSGSRD 36889
17-03-18 06:41:00.254 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:00.254 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:00.254 -07 000000462 INF: FPGA: Recv ZSGSRD 36885
17-03-18 06:41:00.264 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:00.264 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:00.264 -07 000000462 INF: FPGA: Recv ZPIEZORD 33049
17-03-18 06:41:00.274 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:00.274 -07 000000629 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.909 V. Piezo Error = -8.5 V.
17-03-18 06:41:00.274 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36885 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36884 (-176.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36879 (-176.3 uncal um), Max = 36889 (-176.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:41:00.274 -07 000000629 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36885, posNoise = 4, negNoise = 6
17-03-18 06:41:00.274 -07 000000629 INF: Z Motor: After move to -0.177272, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:00.274 -07 000000629 INF: Z Motor: Settle wait time = 1471 ms, measure time = 105 ms (allowed 150 ms), total time = 1576 ms
17-03-18 06:41:00.274 -07 000000629 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:41:00.324 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 06:41:00.324 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:00.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:00.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:00.324 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:00.324 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:00.324 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:00.324 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:00.324 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:00.324 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:00.334 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:00.334 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:00.344 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:41:00.344 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:41:00.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:00.394 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:00.694 -07 000000592 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:00.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:00.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:00.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) start.
17-03-18 06:41:00.734 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:00.734 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:00.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 06:41:00.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:41:00.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:00.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:41:00.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:41:00.834 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:00.834 -07 000000629 INF: Autofocus start
17-03-18 06:41:00.834 -07 000000629 INF: MeasureProfile start
17-03-18 06:41:00.834 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:00.844 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:41:00.844 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:00.844 -07 000000629 INF: MeasureProfile done
17-03-18 06:41:00.844 -07 000000629 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:41:00.844 -07 000000629 INF: Autofocus finished
17-03-18 06:41:01.044 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:01.044 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:41:01.044 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177280416859988. ----------
17-03-18 06:41:01.044 -07 000000610 INF: Cycle	152	Tile	4	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:01.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37222, sync = True, waitForSettling = True)
17-03-18 06:41:01.054 -07 000000610 INF: Z Motor: Moving to -0.170391 mm, started at -0.177280 mm, distance = 6.89 um
17-03-18 06:41:01.054 -07 000000610 INF: FPGA: Xmit ZDACW 37222\n [Z Motor]
17-03-18 06:41:01.054 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:41:01.064 -07 000000610 INF: FPGA: 'ZDACW 37222' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:41:01.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:01.064 -07 000000462 INF: FPGA: Recv ZDACR 37222
17-03-18 06:41:01.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:01.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:01.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:01.224 -07 000000629 INF: FPGA: Recv ZSGSRD 35814
17-03-18 06:41:01.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:01.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:01.234 -07 000000462 INF: FPGA: Recv ZSGSRD 35818
17-03-18 06:41:01.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:01.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:01.244 -07 000000462 INF: FPGA: Recv ZSGSRD 35812
17-03-18 06:41:01.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:01.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:01.254 -07 000000592 INF: FPGA: Recv ZSGSRD 35818
17-03-18 06:41:01.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:01.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:01.264 -07 000000611 INF: FPGA: Recv ZSGSRD 35817
17-03-18 06:41:01.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:01.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:01.274 -07 000000592 INF: FPGA: Recv ZSGSRD 35814
17-03-18 06:41:01.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:01.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:01.284 -07 000000592 INF: FPGA: Recv ZSGSRD 35815
17-03-18 06:41:01.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:01.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:01.294 -07 000000611 INF: FPGA: Recv ZSGSRD 35811
17-03-18 06:41:01.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:01.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:01.304 -07 000000462 INF: FPGA: Recv ZSGSRD 35821
17-03-18 06:41:01.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:01.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:01.314 -07 000000611 INF: FPGA: Recv ZSGSRD 35814
17-03-18 06:41:01.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:01.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:01.324 -07 000000592 INF: FPGA: Recv ZPIEZORD 31612
17-03-18 06:41:01.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:01.334 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -9.3 V.
17-03-18 06:41:01.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35815 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35814 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35811 (-169.5 uncal um), Max = 35821 (-169.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:41:01.334 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35815, posNoise = 6, negNoise = 4
17-03-18 06:41:01.334 -07 000000610 INF: Z Motor: After move to -0.170391, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:01.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:41:01.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:01.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:01.334 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:01.334 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:01.334 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:01.334 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:01.334 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:01.334 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:01.334 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:41:01.334 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:01.334 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:41:01.334 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:01.344 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:41:01.344 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:41:01.344 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:01.344 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:01.354 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:41:01.354 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:41:01.354 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:41:01.354 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:41:01.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 37399 150\n [Camera]
17-03-18 06:41:01.554 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:01.884 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:41:01.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:41:02.014 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:41:02.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:41:02.014 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:02.014 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:02.014 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:41:02.024 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:41:02.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:41:02.024 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:02.024 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:02.024 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:41:02.204 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37399 849
17-03-18 06:41:02.354 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:41:02.394 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:41:02.394 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:41:02.394 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:02.394 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:41:02.394 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:41:02.394 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:02.404 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:41:02.404 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:41:02.404 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:41:02.414 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:41:02.414 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.004458,
17-03-18 06:41:02.584 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:41:02.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:41:02.584 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:02.584 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:02.584 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:41:02.584 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:41:02.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:41:02.584 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:02.584 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:02.584 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:41:02.774 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:41:02.774 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:02.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 37399 150' command took 2 ms to send, 1415 ms to get response, and 1422 ms overall
17-03-18 06:41:02.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:02.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170406509868304. ------
17-03-18 06:41:02.784 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17695 mm
17-03-18 06:41:02.784 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:02.784 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:02.784 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:41:02.784 -07 000000467 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 06:41:02.784 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38655, sync = True, waitForSettling = False)
17-03-18 06:41:02.784 -07 000000462 INF: Z Motor: Moving to -0.176951 mm, started at -0.170407 mm, distance = -6.54 um
17-03-18 06:41:02.784 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:02.794 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:41:02.794 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:02.804 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:02.804 -07 000000611 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:41:02.814 -07 000000462 INF: FPGA: Xmit ZDACW 38655\n [Z Motor]
17-03-18 06:41:02.814 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:41:02.814 -07 000000467 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:02.814 -07 000000467 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:02.814 -07 000000467 INF: Y Motor: Moving 1340 steps-17
17-03-18 06:41:02.814 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:41:02.824 -07 000000462 INF: FPGA: 'ZDACW 38655' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 06:41:02.824 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:02.824 -07 000000585 INF: FPGA: Recv ZDACR 38655
17-03-18 06:41:02.834 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:02.834 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:02.834 -07 000000462 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 06:41:02.984 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:41:02.984 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:41:02.984 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:02.984 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:41:02.984 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:41:02.984 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:02.994 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:02.994 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:41:02.994 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:41:02.994 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:41:03.684 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:03.684 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 06:41:03.684 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 840 ms to get response, and 869 ms overall
17-03-18 06:41:03.684 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 880 ms to get response, and 890 ms overall
17-03-18 06:41:03.734 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:03.734 -07 000000611 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:41:03.744 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:41:03.744 -07 000000467 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:03.744 -07 000000467 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:41:03.744 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 870 ms, distance = 0.838 mm, average velocity = 0.963 mm/sec
17-03-18 06:41:04.694 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:04.694 -07 000000474 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:41:04.704 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:04.704 -07 000000467 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:04.734 -07 000000467 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:04.734 -07 000000467 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:41:04.734 -07 000000467 INF: Y Motor: Moved to 63.2227 after 1948 ms (table move)
17-03-18 06:41:04.734 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176951 mm (DAC = 38655)
17-03-18 06:41:04.734 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:04.734 -07 000000611 INF: FPGA: Recv ZSGSRD 36834
17-03-18 06:41:04.744 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:41:04.744 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:04.744 -07 000000474 INF: FPGA: Recv ZSGSRD 36836
17-03-18 06:41:04.754 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:04.754 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:04.754 -07 000000611 INF: FPGA: Recv ZSGSRD 36830
17-03-18 06:41:04.764 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:04.764 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:04.764 -07 000000474 INF: FPGA: Recv ZSGSRD 36835
17-03-18 06:41:04.774 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:04.774 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:04.774 -07 000000611 INF: FPGA: Recv ZSGSRD 36832
17-03-18 06:41:04.784 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:04.784 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:04.784 -07 000000629 INF: FPGA: Recv ZSGSRD 36834
17-03-18 06:41:04.794 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:04.794 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:04.794 -07 000000467 INF: FPGA: Recv ZSGSRD 36831
17-03-18 06:41:04.804 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:04.804 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:04.804 -07 000000467 INF: FPGA: Recv ZSGSRD 36836
17-03-18 06:41:04.814 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:41:04.814 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:04.814 -07 000000579 INF: FPGA: Recv ZSGSRD 36839
17-03-18 06:41:04.824 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:04.824 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:04.824 -07 000000611 INF: FPGA: Recv ZSGSRD 36836
17-03-18 06:41:04.834 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:04.834 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:04.834 -07 000000579 INF: FPGA: Recv ZPIEZORD 32997
17-03-18 06:41:04.844 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:04.844 -07 000000430 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.898 V. Piezo Error = -8.5 V.
17-03-18 06:41:04.844 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36834 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36834 (-176.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36830 (-176.0 uncal um), Max = 36839 (-176.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:41:04.844 -07 000000430 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36834, posNoise = 5, negNoise = 4
17-03-18 06:41:04.844 -07 000000430 INF: Z Motor: After move to -0.176951, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:04.844 -07 000000430 INF: Z Motor: Settle wait time = 1951 ms, measure time = 104 ms (allowed 150 ms), total time = 2055 ms
17-03-18 06:41:04.844 -07 000000430 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:41:04.894 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2108 ms
17-03-18 06:41:04.894 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:04.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:04.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:04.894 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:04.894 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:04.894 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:04.894 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:04.894 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:41:04.894 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:04.904 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:41:04.904 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:04.904 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:41:04.904 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:41:04.914 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:04.954 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:05.254 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:05.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:05.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:05.384 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:05.384 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:05.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 462 ms to get response, and 470 ms overall
17-03-18 06:41:05.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 06:41:05.494 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:41:05.494 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:05.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:41:05.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 241 ms.
17-03-18 06:41:05.584 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:05.584 -07 000000592 INF: Autofocus start
17-03-18 06:41:05.584 -07 000000592 INF: MeasureProfile start
17-03-18 06:41:05.584 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:05.594 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:41:05.594 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:05.594 -07 000000592 INF: MeasureProfile done
17-03-18 06:41:05.594 -07 000000592 INF: X=-32  Z correction [um]=-0.2344
17-03-18 06:41:05.594 -07 000000592 INF: Autofocus finished
17-03-18 06:41:05.794 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:05.794 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:41:05.794 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.176952782040758. ----------
17-03-18 06:41:05.804 -07 000000610 INF: Cycle	152	Tile	5	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:05.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37116, sync = True, waitForSettling = True)
17-03-18 06:41:05.804 -07 000000610 INF: Z Motor: Moving to -0.169906 mm, started at -0.176953 mm, distance = 7.05 um
17-03-18 06:41:05.804 -07 000000610 INF: FPGA: Xmit ZDACW 37116\n [Z Motor]
17-03-18 06:41:05.804 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:41:05.814 -07 000000610 INF: FPGA: 'ZDACW 37116' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:41:05.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:05.814 -07 000000462 INF: FPGA: Recv ZDACR 37116
17-03-18 06:41:05.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:05.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:05.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:05.974 -07 000000592 INF: FPGA: Recv ZSGSRD 35733
17-03-18 06:41:05.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:05.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:05.984 -07 000000474 INF: FPGA: Recv ZSGSRD 35740
17-03-18 06:41:05.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:05.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:05.994 -07 000000629 INF: FPGA: Recv ZSGSRD 35736
17-03-18 06:41:06.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:06.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:06.004 -07 000000474 INF: FPGA: Recv ZSGSRD 35736
17-03-18 06:41:06.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:06.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:06.014 -07 000000462 INF: FPGA: Recv ZSGSRD 35743
17-03-18 06:41:06.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:06.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:06.024 -07 000000474 INF: FPGA: Recv ZSGSRD 35746
17-03-18 06:41:06.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:06.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:06.034 -07 000000467 INF: FPGA: Recv ZSGSRD 35741
17-03-18 06:41:06.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:06.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:06.044 -07 000000579 INF: FPGA: Recv ZSGSRD 35741
17-03-18 06:41:06.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:06.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:06.054 -07 000000629 INF: FPGA: Recv ZSGSRD 35731
17-03-18 06:41:06.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:06.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:06.064 -07 000000462 INF: FPGA: Recv ZSGSRD 35740
17-03-18 06:41:06.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:06.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:06.074 -07 000000592 INF: FPGA: Recv ZPIEZORD 31533
17-03-18 06:41:06.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:06.084 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -9.3 V.
17-03-18 06:41:06.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35739 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35740 (-169.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35731 (-169.0 uncal um), Max = 35746 (-169.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:41:06.084 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35739, posNoise = 7, negNoise = 8
17-03-18 06:41:06.084 -07 000000610 INF: Z Motor: After move to -0.169906, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:06.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:41:06.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:06.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:06.084 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:06.084 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:06.084 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:06.084 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:06.084 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:06.084 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:06.084 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:06.084 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:06.084 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:41:06.084 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:06.094 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:06.094 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:06.094 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:41:06.094 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:06.104 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:41:06.104 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:41:06.104 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 06:41:06.104 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:41:06.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 37293 150\n [Camera]
17-03-18 06:41:06.304 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:06.774 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:41:06.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:41:06.774 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:06.774 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:41:06.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:41:06.774 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:06.774 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:06.774 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-18 06:41:06.784 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:06.784 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) start.
17-03-18 06:41:06.884 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:41:06.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:41:06.964 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37293 849
17-03-18 06:41:07.114 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:41:07.164 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:41:07.164 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:41:07.164 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:07.164 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:41:07.174 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:41:07.174 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:07.174 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:07.174 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:41:07.174 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:41:07.184 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:41:07.334 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:41:07.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:41:07.344 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:07.344 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:41:07.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:41:07.344 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:07.464 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:07.464 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 06:41:07.464 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:07.464 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:41:07.534 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1416
17-03-18 06:41:07.534 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:07.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 37293 150' command took 2 ms to send, 1412 ms to get response, and 1423 ms overall
17-03-18 06:41:07.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:07.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.16991826974553. ------
17-03-18 06:41:07.534 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:07.534 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17626 mm
17-03-18 06:41:07.534 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:07.544 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:41:07.544 -07 000000462 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 06:41:07.544 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:07.544 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:07.544 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:41:07.544 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 38503, sync = True, waitForSettling = False)
17-03-18 06:41:07.544 -07 000000474 INF: Z Motor: Moving to -0.176255 mm, started at -0.169918 mm, distance = -6.34 um
17-03-18 06:41:07.544 -07 000000579 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:41:07.554 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:07.554 -07 000000462 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:07.554 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:07.554 -07 000000462 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:07.554 -07 000000462 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:41:07.564 -07 000000474 INF: FPGA: Xmit ZDACW 38503\n [Z Motor]
17-03-18 06:41:07.564 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:41:07.574 -07 000000474 INF: FPGA: 'ZDACW 38503' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:41:07.574 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:07.584 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:07.584 -07 000000592 INF: FPGA: Recv ZDACR 38503
17-03-18 06:41:07.594 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:41:07.594 -07 000000474 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 06:41:07.754 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:07.754 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 06:41:07.784 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.990831,
17-03-18 06:41:07.864 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:41:07.864 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:41:07.864 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:07.864 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:41:07.864 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:41:07.864 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:07.864 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:41:07.864 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:41:07.864 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 06:41:07.874 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 06:41:07.944 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 06:41:07.944 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 06:41:08.004 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:08.004 -07 000000444 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:41:08.014 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:08.014 -07 000000462 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:08.014 -07 000000462 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 06:41:08.014 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.143 mm/sec
17-03-18 06:41:08.964 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:08.964 -07 000000382 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:41:08.974 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:08.974 -07 000000462 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:09.014 -07 000000462 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:09.014 -07 000000462 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:41:09.014 -07 000000462 INF: Y Motor: Moved to 64.0562 after 1472 ms (table move)
17-03-18 06:41:09.014 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176255 mm (DAC = 38503)
17-03-18 06:41:09.014 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:09.014 -07 000000474 INF: FPGA: Recv ZSGSRD 36731
17-03-18 06:41:09.024 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:41:09.024 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:09.024 -07 000000382 INF: FPGA: Recv ZSGSRD 36728
17-03-18 06:41:09.034 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:09.034 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:09.034 -07 000000382 INF: FPGA: Recv ZSGSRD 36721
17-03-18 06:41:09.044 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:09.044 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:09.044 -07 000000382 INF: FPGA: Recv ZSGSRD 36722
17-03-18 06:41:09.054 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:09.054 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:09.054 -07 000000629 INF: FPGA: Recv ZSGSRD 36731
17-03-18 06:41:09.064 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:09.064 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:09.064 -07 000000579 INF: FPGA: Recv ZSGSRD 36728
17-03-18 06:41:09.074 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:09.074 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:09.074 -07 000000579 INF: FPGA: Recv ZSGSRD 36728
17-03-18 06:41:09.084 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:09.084 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:09.084 -07 000000579 INF: FPGA: Recv ZSGSRD 36724
17-03-18 06:41:09.094 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:09.094 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:09.094 -07 000000579 INF: FPGA: Recv ZSGSRD 36726
17-03-18 06:41:09.104 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:09.104 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:09.104 -07 000000579 INF: FPGA: Recv ZSGSRD 36728
17-03-18 06:41:09.114 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:09.114 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:09.114 -07 000000579 INF: FPGA: Recv ZPIEZORD 32867
17-03-18 06:41:09.124 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:09.124 -07 000000430 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.875 V. Piezo Error = -8.5 V.
17-03-18 06:41:09.124 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36727 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36728 (-175.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36721 (-175.3 uncal um), Max = 36731 (-175.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:41:09.124 -07 000000430 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36727, posNoise = 4, negNoise = 6
17-03-18 06:41:09.124 -07 000000430 INF: Z Motor: After move to -0.176255, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:09.124 -07 000000430 INF: Z Motor: Settle wait time = 1475 ms, measure time = 104 ms (allowed 150 ms), total time = 1579 ms
17-03-18 06:41:09.124 -07 000000430 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:41:09.174 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 06:41:09.174 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:09.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:09.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:09.174 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:09.174 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:09.174 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:09.174 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:09.184 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:09.184 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:09.184 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:09.184 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:09.194 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:41:09.194 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:41:09.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:09.234 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:09.534 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:09.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:09.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:09.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-18 06:41:09.574 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:09.574 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:09.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 06:41:09.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:41:09.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:09.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:41:09.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:41:09.674 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:09.674 -07 000000581 INF: Autofocus start
17-03-18 06:41:09.674 -07 000000581 INF: MeasureProfile start
17-03-18 06:41:09.674 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:09.684 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:41:09.684 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:09.684 -07 000000581 INF: MeasureProfile done
17-03-18 06:41:09.684 -07 000000581 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:41:09.684 -07 000000581 INF: Autofocus finished
17-03-18 06:41:09.884 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:09.884 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:41:09.884 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.17626539134159. ----------
17-03-18 06:41:09.884 -07 000000610 INF: Cycle	152	Tile	6	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:09.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37000, sync = True, waitForSettling = True)
17-03-18 06:41:09.894 -07 000000610 INF: Z Motor: Moving to -0.169375 mm, started at -0.176265 mm, distance = 6.89 um
17-03-18 06:41:09.894 -07 000000610 INF: FPGA: Xmit ZDACW 37000\n [Z Motor]
17-03-18 06:41:09.894 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:41:09.904 -07 000000610 INF: FPGA: 'ZDACW 37000' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:41:09.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:09.904 -07 000000444 INF: FPGA: Recv ZDACR 37000
17-03-18 06:41:09.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:09.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:10.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:10.064 -07 000000581 INF: FPGA: Recv ZSGSRD 35653
17-03-18 06:41:10.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:10.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:10.074 -07 000000487 INF: FPGA: Recv ZSGSRD 35657
17-03-18 06:41:10.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:10.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:10.084 -07 000000581 INF: FPGA: Recv ZSGSRD 35656
17-03-18 06:41:10.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:10.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:10.094 -07 000000611 INF: FPGA: Recv ZSGSRD 35658
17-03-18 06:41:10.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:10.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:10.104 -07 000000474 INF: FPGA: Recv ZSGSRD 35656
17-03-18 06:41:10.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:10.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:10.114 -07 000000581 INF: FPGA: Recv ZSGSRD 35656
17-03-18 06:41:10.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:10.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:10.124 -07 000000487 INF: FPGA: Recv ZSGSRD 35654
17-03-18 06:41:10.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:10.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:10.134 -07 000000579 INF: FPGA: Recv ZSGSRD 35652
17-03-18 06:41:10.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:10.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:10.144 -07 000000611 INF: FPGA: Recv ZSGSRD 35653
17-03-18 06:41:10.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:10.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:10.154 -07 000000579 INF: FPGA: Recv ZSGSRD 35658
17-03-18 06:41:10.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:10.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:10.164 -07 000000611 INF: FPGA: Recv ZPIEZORD 31452
17-03-18 06:41:10.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:10.174 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.3 V.
17-03-18 06:41:10.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35655 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35656 (-168.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35652 (-168.5 uncal um), Max = 35658 (-168.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:41:10.174 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35655, posNoise = 3, negNoise = 3
17-03-18 06:41:10.174 -07 000000610 INF: Z Motor: After move to -0.169375, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:10.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:41:10.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:10.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:10.174 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:10.174 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:10.174 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:10.174 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:10.174 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:10.174 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:10.174 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:41:10.174 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:10.174 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:10.174 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:10.184 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:41:10.184 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:10.184 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:41:10.184 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:10.194 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:41:10.194 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:41:10.194 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:41:10.194 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:41:10.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 37177 150\n [Camera]
17-03-18 06:41:10.394 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:10.864 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:41:10.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:41:10.864 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:10.864 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:10.864 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:41:10.864 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:41:10.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:41:10.864 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:10.864 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:10.864 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) start.
17-03-18 06:41:11.054 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37177 849
17-03-18 06:41:11.204 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1000
17-03-18 06:41:11.264 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:41:11.264 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:41:11.264 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:11.264 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:41:11.264 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:41:11.264 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:11.264 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:11.264 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:41:11.274 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:11.274 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:41:11.424 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:41:11.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:41:11.424 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:11.424 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:11.424 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 06:41:11.434 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:41:11.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:41:11.434 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:11.434 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:11.434 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:41:11.614 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:41:11.614 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:11.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 37177 150' command took 2 ms to send, 1418 ms to get response, and 1423 ms overall
17-03-18 06:41:11.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:11.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.169378635925622. ------
17-03-18 06:41:11.624 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:11.624 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17572 mm
17-03-18 06:41:11.624 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:11.624 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:11.624 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:41:11.624 -07 000000502 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 06:41:11.624 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 38386, sync = True, waitForSettling = False)
17-03-18 06:41:11.624 -07 000000585 INF: Z Motor: Moving to -0.175720 mm, started at -0.169379 mm, distance = -6.34 um
17-03-18 06:41:11.634 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:41:11.634 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:11.634 -07 000000012 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:41:11.644 -07 000000585 INF: FPGA: Xmit ZDACW 38386\n [Z Motor]
17-03-18 06:41:11.644 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:41:11.644 -07 000000502 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:11.644 -07 000000502 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:11.644 -07 000000502 INF: Y Motor: Moving 1338 steps-13
17-03-18 06:41:11.644 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:41:11.654 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:11.654 -07 000000585 INF: FPGA: 'ZDACW 38386' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:41:11.664 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:11.674 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:11.674 -07 000000576 INF: FPGA: Recv ZDACR 38386
17-03-18 06:41:11.684 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:41:11.684 -07 000000585 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:41:11.834 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:41:11.834 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:41:11.834 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:11.834 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:41:11.834 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:41:11.834 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:11.834 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:11.834 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:41:11.834 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:11.844 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:41:11.854 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:11.854 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:41:11.884 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:41:11.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:41:12.034 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 06:41:12.034 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:41:12.084 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:12.094 -07 000000461 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:41:12.104 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:12.104 -07 000000502 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:12.104 -07 000000502 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:41:12.104 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.107 mm/sec
17-03-18 06:41:13.054 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:13.054 -07 000000474 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:41:13.064 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:13.064 -07 000000502 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:13.094 -07 000000502 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:13.094 -07 000000502 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:41:13.094 -07 000000502 INF: Y Motor: Moved to 64.8779 after 1465 ms (table move)
17-03-18 06:41:13.094 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175720 mm (DAC = 38386)
17-03-18 06:41:13.094 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:13.104 -07 000000502 INF: FPGA: Recv ZSGSRD 36645
17-03-18 06:41:13.104 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 06:41:13.104 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:13.104 -07 000000502 INF: FPGA: Recv ZSGSRD 36640
17-03-18 06:41:13.114 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:41:13.114 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:13.114 -07 000000502 INF: FPGA: Recv ZSGSRD 36642
17-03-18 06:41:13.124 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:13.124 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:13.124 -07 000000461 INF: FPGA: Recv ZSGSRD 36645
17-03-18 06:41:13.134 -07 000000581 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:13.134 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:13.134 -07 000000461 INF: FPGA: Recv ZSGSRD 36640
17-03-18 06:41:13.144 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:13.144 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:13.144 -07 000000461 INF: FPGA: Recv ZSGSRD 36639
17-03-18 06:41:13.154 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:13.164 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:13.164 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.000345,
17-03-18 06:41:13.164 -07 000000579 INF: FPGA: Recv ZSGSRD 36644
17-03-18 06:41:13.174 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:41:13.194 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:13.194 -07 000000424 INF: FPGA: Recv ZSGSRD 36642
17-03-18 06:41:13.204 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:41:13.204 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:13.204 -07 000000585 INF: FPGA: Recv ZSGSRD 36643
17-03-18 06:41:13.214 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:13.234 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:13.234 -07 000000502 INF: FPGA: Recv ZSGSRD 36643
17-03-18 06:41:13.244 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:41:13.244 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:13.244 -07 000000502 INF: FPGA: Recv ZPIEZORD 32760
17-03-18 06:41:13.254 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:13.254 -07 000000581 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.6 V.
17-03-18 06:41:13.254 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36642 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36642 (-174.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36639 (-174.8 uncal um), Max = 36645 (-174.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:41:13.254 -07 000000581 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36642, posNoise = 3, negNoise = 3
17-03-18 06:41:13.254 -07 000000581 INF: Z Motor: After move to -0.175720, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:13.254 -07 000000581 INF: Z Motor: Settle wait time = 1468 ms, measure time = 154 ms (allowed 150 ms), total time = 1622 ms
17-03-18 06:41:13.254 -07 000000581 INF: Z Motor: Warning: Actual position measuring time = 154 ms, longer than max expected time of 150 ms
17-03-18 06:41:13.254 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:41:13.254 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:13.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:13.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:13.254 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:13.254 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:13.254 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:13.254 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:13.264 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:13.264 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:13.264 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:13.264 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:13.264 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:41:13.264 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:41:13.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:13.314 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:13.614 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:13.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:13.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:13.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-18 06:41:13.654 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:13.654 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:13.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:41:13.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 06:41:13.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:13.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:41:13.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:41:13.754 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:13.754 -07 000000012 INF: Autofocus start
17-03-18 06:41:13.754 -07 000000012 INF: MeasureProfile start
17-03-18 06:41:13.754 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:13.764 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:41:13.764 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:13.774 -07 000000012 INF: MeasureProfile done
17-03-18 06:41:13.774 -07 000000012 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:41:13.774 -07 000000012 INF: Autofocus finished
17-03-18 06:41:13.964 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:13.964 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:41:13.964 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.17571933330954. ----------
17-03-18 06:41:13.964 -07 000000610 INF: Cycle	152	Tile	7	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:13.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36937, sync = True, waitForSettling = True)
17-03-18 06:41:13.974 -07 000000610 INF: Z Motor: Moving to -0.169087 mm, started at -0.175719 mm, distance = 6.63 um
17-03-18 06:41:13.974 -07 000000610 INF: FPGA: Xmit ZDACW 36937\n [Z Motor]
17-03-18 06:41:13.974 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:41:13.984 -07 000000610 INF: FPGA: 'ZDACW 36937' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:41:13.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:13.984 -07 000000424 INF: FPGA: Recv ZDACR 36937
17-03-18 06:41:13.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:13.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:14.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:14.144 -07 000000474 INF: FPGA: Recv ZSGSRD 35614
17-03-18 06:41:14.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:14.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:14.154 -07 000000012 INF: FPGA: Recv ZSGSRD 35615
17-03-18 06:41:14.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:14.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:14.164 -07 000000474 INF: FPGA: Recv ZSGSRD 35613
17-03-18 06:41:14.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:14.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:14.174 -07 000000012 INF: FPGA: Recv ZSGSRD 35604
17-03-18 06:41:14.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:14.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:14.184 -07 000000012 INF: FPGA: Recv ZSGSRD 35613
17-03-18 06:41:14.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:14.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:14.194 -07 000000012 INF: FPGA: Recv ZSGSRD 35620
17-03-18 06:41:14.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:14.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:14.204 -07 000000576 INF: FPGA: Recv ZSGSRD 35612
17-03-18 06:41:14.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:14.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:14.214 -07 000000576 INF: FPGA: Recv ZSGSRD 35604
17-03-18 06:41:14.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:14.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:14.224 -07 000000012 INF: FPGA: Recv ZSGSRD 35617
17-03-18 06:41:14.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:14.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:14.234 -07 000000012 INF: FPGA: Recv ZSGSRD 35604
17-03-18 06:41:14.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:14.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:14.244 -07 000000012 INF: FPGA: Recv ZPIEZORD 31364
17-03-18 06:41:14.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:14.254 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.4 V.
17-03-18 06:41:14.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35612 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35613 (-168.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35604 (-168.2 uncal um), Max = 35620 (-168.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:41:14.254 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35612, posNoise = 8, negNoise = 8
17-03-18 06:41:14.254 -07 000000610 INF: Z Motor: After move to -0.169087, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:14.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:41:14.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:14.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:14.254 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:14.254 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:14.254 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:14.254 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:14.254 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:14.254 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:14.254 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:14.254 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:14.254 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:41:14.254 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:14.264 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:41:14.264 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:14.264 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:41:14.264 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:14.274 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:41:14.274 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:41:14.274 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:41:14.274 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:41:14.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 37114 150\n [Camera]
17-03-18 06:41:14.474 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:14.934 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:41:14.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:41:14.934 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:14.934 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:14.934 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:41:14.944 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:41:14.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:41:14.944 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:14.944 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:14.944 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:41:15.134 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37114 849
17-03-18 06:41:15.284 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:41:15.324 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:41:15.324 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:41:15.324 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:15.324 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 06:41:15.324 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:41:15.324 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:15.324 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:41:15.324 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:41:15.334 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:41:15.334 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:41:15.504 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1223
17-03-18 06:41:15.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1223
17-03-18 06:41:15.504 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:15.504 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:15.504 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:41:15.504 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1223
17-03-18 06:41:15.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1223
17-03-18 06:41:15.504 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:15.504 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:15.504 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:41:15.694 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:41:15.694 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:15.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 37114 150' command took 2 ms to send, 1415 ms to get response, and 1421 ms overall
17-03-18 06:41:15.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:15.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.169102394803526. ------
17-03-18 06:41:15.704 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:15.704 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17584 mm
17-03-18 06:41:15.704 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:15.704 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:41:15.704 -07 000000461 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 06:41:15.714 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:15.914 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 06:41:15.914 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:41:15.914 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:15.914 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 06:41:15.914 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:41:15.914 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:15.914 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:15.924 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:41:15.924 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 06:41:15.924 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 06:41:15.934 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38413, sync = True, waitForSettling = False)
17-03-18 06:41:15.934 -07 000000576 INF: Z Motor: Moving to -0.175843 mm, started at -0.169102 mm, distance = -6.74 um
17-03-18 06:41:15.934 -07 000000576 INF: FPGA: Xmit ZDACW 38413\n [Z Motor]
17-03-18 06:41:15.934 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:15.934 -07 000000012 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:41:15.934 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:41:15.934 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 236 ms overall
17-03-18 06:41:15.934 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 217 ms to get response, and 233 ms overall
17-03-18 06:41:15.934 -07 000000461 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:15.934 -07 000000461 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:15.934 -07 000000461 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:41:15.944 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:15.944 -07 000000576 INF: FPGA: 'ZDACW 38413' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:41:15.954 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:15.964 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:15.964 -07 000000012 INF: FPGA: Recv ZDACR 38413
17-03-18 06:41:15.974 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:41:15.974 -07 000000576 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:41:16.154 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:16.154 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 215 ms overall
17-03-18 06:41:16.314 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:41:16.314 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 06:41:16.374 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:16.374 -07 000000382 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:41:16.384 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:16.384 -07 000000461 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:16.384 -07 000000461 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:41:16.384 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.845 mm, average velocity = 2.223 mm/sec
17-03-18 06:41:16.884 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:41:16.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:41:17.334 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:17.334 -07 000000474 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:41:17.344 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:17.344 -07 000000461 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:17.374 -07 000000461 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:17.384 -07 000000461 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:41:17.384 -07 000000461 INF: Y Motor: Moved to 65.7134 after 1676 ms (table move)
17-03-18 06:41:17.384 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175843 mm (DAC = 38413)
17-03-18 06:41:17.384 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:17.384 -07 000000382 INF: FPGA: Recv ZSGSRD 36664
17-03-18 06:41:17.394 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:41:17.394 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:17.394 -07 000000576 INF: FPGA: Recv ZSGSRD 36658
17-03-18 06:41:17.404 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:17.404 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:17.404 -07 000000474 INF: FPGA: Recv ZSGSRD 36659
17-03-18 06:41:17.414 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:17.414 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:17.414 -07 000000467 INF: FPGA: Recv ZSGSRD 36660
17-03-18 06:41:17.424 -07 000000502 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:17.424 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:17.424 -07 000000461 INF: FPGA: Recv ZSGSRD 36663
17-03-18 06:41:17.434 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:17.434 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:17.434 -07 000000576 INF: FPGA: Recv ZSGSRD 36664
17-03-18 06:41:17.444 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:17.444 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:17.444 -07 000000382 INF: FPGA: Recv ZSGSRD 36662
17-03-18 06:41:17.454 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:17.454 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:17.454 -07 000000467 INF: FPGA: Recv ZSGSRD 36663
17-03-18 06:41:17.464 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:17.464 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:17.464 -07 000000012 INF: FPGA: Recv ZSGSRD 36666
17-03-18 06:41:17.474 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:17.474 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:17.474 -07 000000576 INF: FPGA: Recv ZSGSRD 36663
17-03-18 06:41:17.484 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:17.484 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:17.484 -07 000000382 INF: FPGA: Recv ZPIEZORD 32800
17-03-18 06:41:17.494 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:17.494 -07 000000502 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.5 V.
17-03-18 06:41:17.494 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36662 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36663 (-175.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36658 (-174.9 uncal um), Max = 36666 (-175.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:41:17.494 -07 000000502 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36662, posNoise = 4, negNoise = 4
17-03-18 06:41:17.494 -07 000000502 INF: Z Motor: After move to -0.175843, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:17.494 -07 000000502 INF: Z Motor: Settle wait time = 1450 ms, measure time = 107 ms (allowed 150 ms), total time = 1557 ms
17-03-18 06:41:17.494 -07 000000502 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:41:17.544 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1839 ms
17-03-18 06:41:17.544 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:17.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:17.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:17.544 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:17.544 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:17.544 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:17.544 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:17.544 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:41:17.544 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:17.554 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:17.554 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:17.554 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:41:17.554 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:41:17.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:17.604 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:17.904 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:17.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:17.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:17.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2607377792, 0x0, 559484976) start.
17-03-18 06:41:17.944 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:17.944 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:17.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:41:18.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2607377792, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 06:41:18.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:18.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:41:18.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:41:18.044 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:18.044 -07 000000502 INF: Autofocus start
17-03-18 06:41:18.044 -07 000000502 INF: MeasureProfile start
17-03-18 06:41:18.044 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:18.054 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:41:18.054 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:18.054 -07 000000502 INF: MeasureProfile done
17-03-18 06:41:18.054 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:41:18.054 -07 000000502 INF: Autofocus finished
17-03-18 06:41:18.254 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:18.254 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:41:18.254 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.175847817552375. ----------
17-03-18 06:41:18.254 -07 000000610 INF: Cycle	152	Tile	8	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:18.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36909, sync = True, waitForSettling = True)
17-03-18 06:41:18.264 -07 000000610 INF: Z Motor: Moving to -0.168959 mm, started at -0.175848 mm, distance = 6.89 um
17-03-18 06:41:18.264 -07 000000610 INF: FPGA: Xmit ZDACW 36909\n [Z Motor]
17-03-18 06:41:18.264 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:41:18.274 -07 000000610 INF: FPGA: 'ZDACW 36909' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:41:18.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:18.274 -07 000000629 INF: FPGA: Recv ZDACR 36909
17-03-18 06:41:18.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:18.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:18.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:18.434 -07 000000629 INF: FPGA: Recv ZSGSRD 35592
17-03-18 06:41:18.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:18.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:18.444 -07 000000382 INF: FPGA: Recv ZSGSRD 35587
17-03-18 06:41:18.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:18.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:18.454 -07 000000474 INF: FPGA: Recv ZSGSRD 35590
17-03-18 06:41:18.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:18.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:18.464 -07 000000474 INF: FPGA: Recv ZSGSRD 35592
17-03-18 06:41:18.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:18.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:18.474 -07 000000502 INF: FPGA: Recv ZSGSRD 35588
17-03-18 06:41:18.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:18.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:18.484 -07 000000502 INF: FPGA: Recv ZSGSRD 35589
17-03-18 06:41:18.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:18.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:18.494 -07 000000592 INF: FPGA: Recv ZSGSRD 35592
17-03-18 06:41:18.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:18.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:18.504 -07 000000592 INF: FPGA: Recv ZSGSRD 35589
17-03-18 06:41:18.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:18.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:18.514 -07 000000592 INF: FPGA: Recv ZSGSRD 35596
17-03-18 06:41:18.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:18.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:18.524 -07 000000502 INF: FPGA: Recv ZSGSRD 35584
17-03-18 06:41:18.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:18.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:18.534 -07 000000474 INF: FPGA: Recv ZPIEZORD 31322
17-03-18 06:41:18.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:18.544 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.4 V.
17-03-18 06:41:18.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35590 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35590 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35584 (-168.1 uncal um), Max = 35596 (-168.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:41:18.544 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35590, posNoise = 6, negNoise = 6
17-03-18 06:41:18.544 -07 000000610 INF: Z Motor: After move to -0.168959, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:18.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:41:18.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:18.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:18.544 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:18.544 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:18.544 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:18.544 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:18.544 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:18.544 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:18.544 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:41:18.544 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:18.544 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:18.544 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:18.544 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:41:18.554 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:18.554 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.993549,
17-03-18 06:41:18.554 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:18.554 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:18.564 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:41:18.564 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:41:18.564 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:41:18.564 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:41:18.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 37086 150\n [Camera]
17-03-18 06:41:18.774 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:19.244 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:41:19.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:41:19.244 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:19.244 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:19.244 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:41:19.244 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:41:19.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:41:19.244 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:19.244 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:19.244 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:41:19.434 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37086 849
17-03-18 06:41:19.584 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:41:19.644 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:41:19.644 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:41:19.644 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:19.644 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:41:19.644 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:19.644 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:41:19.644 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:41:19.644 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:19.654 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:19.654 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:41:19.814 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:41:19.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:41:19.814 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:19.814 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:19.814 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 06:41:19.814 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:41:19.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:41:19.814 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:19.814 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:19.814 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 06:41:20.004 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:41:20.004 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:20.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 37086 150' command took 2 ms to send, 1414 ms to get response, and 1435 ms overall
17-03-18 06:41:20.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:20.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.168961062136407. ------
17-03-18 06:41:20.004 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:20.004 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17542 mm
17-03-18 06:41:20.004 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:20.204 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:41:20.204 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:41:20.204 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:20.214 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:41:20.214 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:41:20.214 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:20.214 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:20.214 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:41:20.214 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:41:20.214 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:41:20.224 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:20.224 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 218 ms to get response, and 219 ms overall
17-03-18 06:41:20.224 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:41:20.224 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:20.224 -07 000000576 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 06:41:20.224 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38321, sync = True, waitForSettling = False)
17-03-18 06:41:20.224 -07 000000462 INF: Z Motor: Moving to -0.175422 mm, started at -0.168961 mm, distance = -6.46 um
17-03-18 06:41:20.234 -07 000000462 INF: FPGA: Xmit ZDACW 38321\n [Z Motor]
17-03-18 06:41:20.244 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:20.814 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:41:20.814 -07 000000585 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:41:20.814 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:20.814 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 560 ms to get response, and 581 ms overall
17-03-18 06:41:20.814 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 580 ms to get response, and 581 ms overall
17-03-18 06:41:20.814 -07 000000576 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:20.814 -07 000000576 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:20.814 -07 000000576 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:41:20.814 -07 000000462 INF: FPGA: 'ZDACW 38321' command took 0 ms to send, 570 ms to get response, and 580 ms overall
17-03-18 06:41:20.814 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:20.824 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:20.824 -07 000000467 INF: FPGA: Recv ZDACR 38321
17-03-18 06:41:20.834 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:41:20.834 -07 000000462 INF: Z Motor: MoveAbsStepped took 600 ms (did NOT wait for settling yet))
17-03-18 06:41:21.184 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:41:21.184 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 06:41:21.244 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:21.244 -07 000000585 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:41:21.254 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:21.254 -07 000000576 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:21.254 -07 000000576 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:41:21.254 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.220 mm/sec
17-03-18 06:41:21.884 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:41:21.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:41:22.204 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:22.204 -07 000000430 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:41:22.214 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:22.214 -07 000000576 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:22.244 -07 000000576 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:22.244 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:41:22.244 -07 000000576 INF: Y Motor: Moved to 66.5386 after 2016 ms (table move)
17-03-18 06:41:22.244 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175422 mm (DAC = 38321)
17-03-18 06:41:22.244 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:22.254 -07 000000462 INF: FPGA: Recv ZSGSRD 36595
17-03-18 06:41:22.254 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:41:22.254 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:22.254 -07 000000585 INF: FPGA: Recv ZSGSRD 36598
17-03-18 06:41:22.264 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:41:22.264 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:22.264 -07 000000462 INF: FPGA: Recv ZSGSRD 36594
17-03-18 06:41:22.274 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:22.274 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:22.274 -07 000000581 INF: FPGA: Recv ZSGSRD 36590
17-03-18 06:41:22.284 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:22.284 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:22.284 -07 000000424 INF: FPGA: Recv ZSGSRD 36592
17-03-18 06:41:22.294 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:41:22.294 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:22.294 -07 000000585 INF: FPGA: Recv ZSGSRD 36602
17-03-18 06:41:22.304 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:22.304 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:22.304 -07 000000424 INF: FPGA: Recv ZSGSRD 36587
17-03-18 06:41:22.314 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:22.314 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:22.314 -07 000000581 INF: FPGA: Recv ZSGSRD 36601
17-03-18 06:41:22.324 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:22.324 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:22.324 -07 000000576 INF: FPGA: Recv ZSGSRD 36601
17-03-18 06:41:22.334 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:22.334 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:22.334 -07 000000430 INF: FPGA: Recv ZSGSRD 36599
17-03-18 06:41:22.344 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:22.344 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:22.344 -07 000000467 INF: FPGA: Recv ZPIEZORD 32727
17-03-18 06:41:22.354 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:22.354 -07 000000382 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.847 V. Piezo Error = -8.6 V.
17-03-18 06:41:22.354 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36596 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36596 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36587 (-174.5 uncal um), Max = 36602 (-174.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:41:22.354 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36596, posNoise = 6, negNoise = 9
17-03-18 06:41:22.354 -07 000000382 INF: Z Motor: After move to -0.175422, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:22.354 -07 000000382 INF: Z Motor: Settle wait time = 2019 ms, measure time = 101 ms (allowed 150 ms), total time = 2120 ms
17-03-18 06:41:22.354 -07 000000382 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 06:41:22.404 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2391 ms
17-03-18 06:41:22.404 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:22.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:22.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:22.404 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:22.404 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:22.404 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:22.404 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:41:22.404 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:22.404 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:22.404 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:22.404 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:22.424 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:41:22.424 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:41:22.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:22.464 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:22.764 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:22.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:22.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:22.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 06:41:22.804 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:22.804 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:22.804 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:41:22.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:41:22.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:22.884 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:41:22.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:41:22.904 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:22.904 -07 000000585 INF: Autofocus start
17-03-18 06:41:22.904 -07 000000585 INF: MeasureProfile start
17-03-18 06:41:22.904 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:22.914 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:41:22.914 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:22.914 -07 000000585 INF: MeasureProfile done
17-03-18 06:41:22.914 -07 000000585 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:41:22.914 -07 000000585 INF: Autofocus finished
17-03-18 06:41:23.114 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:23.114 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 06:41:23.124 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175423819551019. ----------
17-03-18 06:41:23.124 -07 000000610 INF: Cycle	152	Tile	9	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:23.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36818, sync = True, waitForSettling = True)
17-03-18 06:41:23.134 -07 000000610 INF: Z Motor: Moving to -0.168542 mm, started at -0.175424 mm, distance = 6.88 um
17-03-18 06:41:23.134 -07 000000610 INF: FPGA: Xmit ZDACW 36818\n [Z Motor]
17-03-18 06:41:23.134 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:41:23.144 -07 000000610 INF: FPGA: 'ZDACW 36818' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:41:23.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:23.144 -07 000000502 INF: FPGA: Recv ZDACR 36818
17-03-18 06:41:23.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:23.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:23.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:23.304 -07 000000629 INF: FPGA: Recv ZSGSRD 35522
17-03-18 06:41:23.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:23.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:23.314 -07 000000629 INF: FPGA: Recv ZSGSRD 35528
17-03-18 06:41:23.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:23.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:23.324 -07 000000629 INF: FPGA: Recv ZSGSRD 35529
17-03-18 06:41:23.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:23.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:23.334 -07 000000629 INF: FPGA: Recv ZSGSRD 35528
17-03-18 06:41:23.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:23.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:23.344 -07 000000430 INF: FPGA: Recv ZSGSRD 35524
17-03-18 06:41:23.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:23.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:23.354 -07 000000430 INF: FPGA: Recv ZSGSRD 35523
17-03-18 06:41:23.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:23.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:23.364 -07 000000430 INF: FPGA: Recv ZSGSRD 35533
17-03-18 06:41:23.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:23.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:23.374 -07 000000430 INF: FPGA: Recv ZSGSRD 35525
17-03-18 06:41:23.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:23.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:23.384 -07 000000430 INF: FPGA: Recv ZSGSRD 35527
17-03-18 06:41:23.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:23.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:23.394 -07 000000430 INF: FPGA: Recv ZSGSRD 35527
17-03-18 06:41:23.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:23.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:23.404 -07 000000430 INF: FPGA: Recv ZPIEZORD 31248
17-03-18 06:41:23.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:23.414 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.4 V.
17-03-18 06:41:23.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35527 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35527 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35522 (-167.7 uncal um), Max = 35533 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:41:23.414 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35527, posNoise = 6, negNoise = 5
17-03-18 06:41:23.414 -07 000000610 INF: Z Motor: After move to -0.168542, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:23.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:41:23.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:23.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:23.414 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:23.414 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:23.414 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:23.414 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:23.414 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:23.414 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:23.414 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:23.414 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:23.414 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:41:23.414 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:23.424 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:23.424 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:41:23.424 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:23.424 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:23.434 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:41:23.434 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:41:23.434 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:41:23.434 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:41:23.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 36994 150\n [Camera]
17-03-18 06:41:23.634 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:23.924 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.988112,
17-03-18 06:41:24.104 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:41:24.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:41:24.104 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:24.104 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:24.104 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:41:24.104 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:41:24.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:41:24.104 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:24.104 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:24.104 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:41:24.294 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36994 849
17-03-18 06:41:24.444 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:41:24.504 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:41:24.504 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:41:24.504 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:24.504 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:41:24.504 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:41:24.514 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:24.514 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:41:24.514 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:41:24.514 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:41:24.524 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:41:24.664 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:41:24.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:41:24.664 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:24.664 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:24.664 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:41:24.674 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:41:24.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:41:24.674 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:24.674 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:24.674 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:41:24.854 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:41:24.864 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:24.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 36994 150' command took 2 ms to send, 1410 ms to get response, and 1421 ms overall
17-03-18 06:41:24.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:24.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168556336771476. ------
17-03-18 06:41:24.864 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:24.864 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17526 mm
17-03-18 06:41:24.864 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:24.864 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:41:24.864 -07 000000629 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 06:41:24.874 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:25.064 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:41:25.064 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:41:25.064 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:25.064 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:41:25.064 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:41:25.064 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:25.064 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:25.074 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:41:25.074 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:41:25.074 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:41:25.094 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:25.094 -07 000000382 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:41:25.094 -07 000000629 INF: FPGA: 'YRDPOS' command took 2 ms to send, 219 ms to get response, and 231 ms overall
17-03-18 06:41:25.094 -07 000000629 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:25.094 -07 000000629 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:25.094 -07 000000629 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:41:25.104 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:25.104 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 229 ms to get response, and 234 ms overall
17-03-18 06:41:25.104 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 38286, sync = True, waitForSettling = False)
17-03-18 06:41:25.104 -07 000000430 INF: Z Motor: Moving to -0.175262 mm, started at -0.168556 mm, distance = -6.71 um
17-03-18 06:41:25.114 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:25.124 -07 000000430 INF: FPGA: Xmit ZDACW 38286\n [Z Motor]
17-03-18 06:41:25.124 -07 000000382 INF: FPGA: Recv ZDACW
17-03-18 06:41:25.134 -07 000000430 INF: FPGA: 'ZDACW 38286' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:41:25.134 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:25.134 -07 000000382 INF: FPGA: Recv ZDACR 38286
17-03-18 06:41:25.144 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:25.144 -07 000000430 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 06:41:25.314 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:25.314 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:41:25.484 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 06:41:25.484 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 380 ms overall
17-03-18 06:41:25.534 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:25.534 -07 000000382 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:41:25.544 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:41:25.544 -07 000000629 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:25.544 -07 000000629 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 06:41:25.544 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.215 mm/sec
17-03-18 06:41:26.494 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:26.494 -07 000000382 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:41:26.504 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:26.504 -07 000000629 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:26.534 -07 000000629 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:26.534 -07 000000629 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:41:26.534 -07 000000629 INF: Y Motor: Moved to 67.3711 after 1667 ms (table move)
17-03-18 06:41:26.534 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175262 mm (DAC = 38286)
17-03-18 06:41:26.534 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:26.544 -07 000000430 INF: FPGA: Recv ZSGSRD 36580
17-03-18 06:41:26.544 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:41:26.544 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:26.544 -07 000000430 INF: FPGA: Recv ZSGSRD 36574
17-03-18 06:41:26.554 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:41:26.554 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:26.554 -07 000000629 INF: FPGA: Recv ZSGSRD 36576
17-03-18 06:41:26.564 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:26.564 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:26.564 -07 000000382 INF: FPGA: Recv ZSGSRD 36575
17-03-18 06:41:26.574 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:26.574 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:26.574 -07 000000462 INF: FPGA: Recv ZSGSRD 36569
17-03-18 06:41:26.584 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:26.584 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:26.584 -07 000000430 INF: FPGA: Recv ZSGSRD 36573
17-03-18 06:41:26.594 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:26.594 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:26.594 -07 000000382 INF: FPGA: Recv ZSGSRD 36575
17-03-18 06:41:26.604 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:26.604 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:26.604 -07 000000430 INF: FPGA: Recv ZSGSRD 36571
17-03-18 06:41:26.614 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:26.614 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:26.614 -07 000000382 INF: FPGA: Recv ZSGSRD 36566
17-03-18 06:41:26.624 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:26.624 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:26.624 -07 000000430 INF: FPGA: Recv ZSGSRD 36574
17-03-18 06:41:26.634 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:26.634 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:26.634 -07 000000462 INF: FPGA: Recv ZPIEZORD 32666
17-03-18 06:41:26.644 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:26.644 -07 000000467 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.6 V.
17-03-18 06:41:26.644 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36573 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36574 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36566 (-174.3 uncal um), Max = 36580 (-174.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:41:26.644 -07 000000467 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36573, posNoise = 7, negNoise = 7
17-03-18 06:41:26.644 -07 000000467 INF: Z Motor: After move to -0.175262, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:26.644 -07 000000467 INF: Z Motor: Settle wait time = 1437 ms, measure time = 103 ms (allowed 150 ms), total time = 1540 ms
17-03-18 06:41:26.644 -07 000000467 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:41:26.694 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1824 ms
17-03-18 06:41:26.694 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:26.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:26.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:26.694 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:26.704 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:26.704 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:26.704 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:26.704 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:26.704 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:26.704 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:26.704 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:26.714 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:41:26.714 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:41:26.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:26.764 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:26.884 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:41:26.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:41:27.064 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:27.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:27.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:27.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 06:41:27.104 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:27.104 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:27.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 06:41:27.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 06:41:27.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:27.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:41:27.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 06:41:27.204 -07 000000474 INF: Autofocus start
17-03-18 06:41:27.204 -07 000000474 INF: MeasureProfile start
17-03-18 06:41:27.204 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:27.204 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:27.214 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:41:27.214 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:27.214 -07 000000474 INF: MeasureProfile done
17-03-18 06:41:27.214 -07 000000474 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:41:27.214 -07 000000474 INF: Autofocus finished
17-03-18 06:41:27.414 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:27.414 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:41:27.414 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175276062671758. ----------
17-03-18 06:41:27.424 -07 000000610 INF: Cycle	152	Tile	10	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:27.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36837, sync = True, waitForSettling = True)
17-03-18 06:41:27.424 -07 000000610 INF: Z Motor: Moving to -0.168629 mm, started at -0.175276 mm, distance = 6.65 um
17-03-18 06:41:27.424 -07 000000610 INF: FPGA: Xmit ZDACW 36837\n [Z Motor]
17-03-18 06:41:27.424 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:41:27.434 -07 000000610 INF: FPGA: 'ZDACW 36837' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:41:27.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:27.434 -07 000000382 INF: FPGA: Recv ZDACR 36837
17-03-18 06:41:27.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:27.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:27.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:27.594 -07 000000467 INF: FPGA: Recv ZSGSRD 35538
17-03-18 06:41:27.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:27.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:27.604 -07 000000592 INF: FPGA: Recv ZSGSRD 35539
17-03-18 06:41:27.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:27.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:27.614 -07 000000629 INF: FPGA: Recv ZSGSRD 35545
17-03-18 06:41:27.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:27.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:27.624 -07 000000382 INF: FPGA: Recv ZSGSRD 35535
17-03-18 06:41:27.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:27.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:27.634 -07 000000467 INF: FPGA: Recv ZSGSRD 35538
17-03-18 06:41:27.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:27.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:27.644 -07 000000592 INF: FPGA: Recv ZSGSRD 35538
17-03-18 06:41:27.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:27.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:27.654 -07 000000382 INF: FPGA: Recv ZSGSRD 35540
17-03-18 06:41:27.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:27.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:27.664 -07 000000474 INF: FPGA: Recv ZSGSRD 35544
17-03-18 06:41:27.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:27.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:27.674 -07 000000430 INF: FPGA: Recv ZSGSRD 35540
17-03-18 06:41:27.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:27.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:27.684 -07 000000592 INF: FPGA: Recv ZSGSRD 35542
17-03-18 06:41:27.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:27.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:27.694 -07 000000430 INF: FPGA: Recv ZPIEZORD 31277
17-03-18 06:41:27.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:27.704 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.4 V.
17-03-18 06:41:27.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35540 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35540 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35535 (-167.7 uncal um), Max = 35545 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:41:27.704 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35540, posNoise = 5, negNoise = 5
17-03-18 06:41:27.704 -07 000000610 INF: Z Motor: After move to -0.168629, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:27.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:41:27.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:27.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:27.704 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:27.704 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:27.704 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:27.704 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:27.704 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:27.704 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:27.714 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:27.714 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:27.714 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:41:27.714 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:27.714 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:27.714 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:27.714 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:41:27.714 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:27.724 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:41:27.724 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:41:27.724 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:41:27.724 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:41:27.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 37013 150\n [Camera]
17-03-18 06:41:27.924 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:28.394 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:41:28.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:41:28.394 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:28.394 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:28.394 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 06:41:28.394 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:41:28.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:41:28.394 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:28.394 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:28.394 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 06:41:28.584 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37013 849
17-03-18 06:41:28.734 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:41:28.794 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:41:28.794 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:41:28.794 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:28.794 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:41:28.794 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:41:28.794 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:28.794 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:28.794 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:41:28.794 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:28.804 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:41:28.954 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:41:28.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:41:28.954 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:29.094 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:41:29.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:41:29.104 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:29.104 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:29.104 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 06:41:29.104 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:29.104 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:41:29.144 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:41:29.144 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:29.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 37013 150' command took 2 ms to send, 1418 ms to get response, and 1422 ms overall
17-03-18 06:41:29.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:29.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.168639851529319. ------
17-03-18 06:41:29.154 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:29.154 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17483 mm
17-03-18 06:41:29.154 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:29.154 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:41:29.154 -07 000000487 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 06:41:29.164 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:29.504 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:41:29.504 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:41:29.504 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:29.504 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:41:29.504 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:41:29.504 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:29.504 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:41:29.504 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:41:29.504 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 549 ms.
17-03-18 06:41:29.514 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:41:29.524 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38191, sync = True, waitForSettling = False)
17-03-18 06:41:29.524 -07 000000467 INF: Z Motor: Moving to -0.174827 mm, started at -0.168640 mm, distance = -6.19 um
17-03-18 06:41:29.524 -07 000000467 INF: FPGA: Xmit ZDACW 38191\n [Z Motor]
17-03-18 06:41:29.524 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:29.524 -07 000000592 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:41:29.524 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:41:29.524 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 365 ms to get response, and 370 ms overall
17-03-18 06:41:29.524 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 355 ms to get response, and 367 ms overall
17-03-18 06:41:29.524 -07 000000487 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:29.524 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.988112,
17-03-18 06:41:29.524 -07 000000487 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:29.524 -07 000000487 INF: Y Motor: Moving 1346 steps-24
17-03-18 06:41:29.534 -07 000000467 INF: FPGA: 'ZDACW 38191' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:29.534 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:29.534 -07 000000592 INF: FPGA: Recv ZDACR 38191
17-03-18 06:41:29.544 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:29.544 -07 000000467 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 06:41:29.554 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:29.564 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:29.754 -07 000000592 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:29.754 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 227 ms overall
17-03-18 06:41:29.934 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 06:41:29.934 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 408 ms overall
17-03-18 06:41:29.984 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:29.994 -07 000000467 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:41:30.004 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:30.004 -07 000000487 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:30.004 -07 000000487 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:41:30.004 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 409 ms, distance = 0.842 mm, average velocity = 2.057 mm/sec
17-03-18 06:41:30.954 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:30.954 -07 000000592 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:41:30.964 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:30.964 -07 000000487 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:30.994 -07 000000487 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:30.994 -07 000000487 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:41:30.994 -07 000000487 INF: Y Motor: Moved to 68.2046 after 1835 ms (table move)
17-03-18 06:41:30.994 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174827 mm (DAC = 38191)
17-03-18 06:41:30.994 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:30.994 -07 000000467 INF: FPGA: Recv ZSGSRD 36510
17-03-18 06:41:31.004 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:41:31.004 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:31.004 -07 000000592 INF: FPGA: Recv ZSGSRD 36508
17-03-18 06:41:31.014 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:31.014 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:31.014 -07 000000467 INF: FPGA: Recv ZSGSRD 36500
17-03-18 06:41:31.024 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:31.024 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:31.024 -07 000000487 INF: FPGA: Recv ZSGSRD 36500
17-03-18 06:41:31.034 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:31.034 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:31.034 -07 000000467 INF: FPGA: Recv ZSGSRD 36506
17-03-18 06:41:31.044 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:31.044 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:31.044 -07 000000462 INF: FPGA: Recv ZSGSRD 36507
17-03-18 06:41:31.054 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:31.054 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:31.054 -07 000000487 INF: FPGA: Recv ZSGSRD 36505
17-03-18 06:41:31.064 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:31.064 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:31.064 -07 000000592 INF: FPGA: Recv ZSGSRD 36508
17-03-18 06:41:31.074 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:31.074 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:31.074 -07 000000592 INF: FPGA: Recv ZSGSRD 36510
17-03-18 06:41:31.084 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:31.084 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:31.084 -07 000000487 INF: FPGA: Recv ZSGSRD 36508
17-03-18 06:41:31.094 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:31.094 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:31.094 -07 000000462 INF: FPGA: Recv ZPIEZORD 32605
17-03-18 06:41:31.104 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:31.104 -07 000000382 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.6 V.
17-03-18 06:41:31.104 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36506 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36508 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36500 (-173.9 uncal um), Max = 36510 (-174.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:41:31.104 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36506, posNoise = 4, negNoise = 6
17-03-18 06:41:31.104 -07 000000382 INF: Z Motor: After move to -0.174827, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:31.104 -07 000000382 INF: Z Motor: Settle wait time = 1475 ms, measure time = 105 ms (allowed 150 ms), total time = 1580 ms
17-03-18 06:41:31.104 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:41:31.154 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1995 ms
17-03-18 06:41:31.154 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:31.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:31.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:31.154 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:31.154 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:31.154 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:31.154 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:41:31.154 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:31.154 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:31.164 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:31.164 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:31.164 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:41:31.164 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:41:31.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:31.214 -07 000000487 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:31.514 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:31.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:31.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:31.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 06:41:31.554 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:31.554 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:31.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:41:31.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 06:41:31.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:31.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:41:31.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:41:31.754 -07 000000467 INF: Autofocus start
17-03-18 06:41:31.754 -07 000000467 INF: MeasureProfile start
17-03-18 06:41:31.754 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:31.754 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:31.764 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:41:31.764 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:31.764 -07 000000467 INF: MeasureProfile done
17-03-18 06:41:31.764 -07 000000467 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:41:31.764 -07 000000467 INF: Autofocus finished
17-03-18 06:41:31.884 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:41:31.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:41:31.964 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:31.964 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:41:31.964 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.17484564045826. ----------
17-03-18 06:41:31.964 -07 000000610 INF: Cycle	152	Tile	11	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:31.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36706, sync = True, waitForSettling = True)
17-03-18 06:41:31.974 -07 000000610 INF: Z Motor: Moving to -0.168029 mm, started at -0.174846 mm, distance = 6.82 um
17-03-18 06:41:31.974 -07 000000610 INF: FPGA: Xmit ZDACW 36706\n [Z Motor]
17-03-18 06:41:31.974 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:41:31.984 -07 000000610 INF: FPGA: 'ZDACW 36706' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:31.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:31.984 -07 000000467 INF: FPGA: Recv ZDACR 36706
17-03-18 06:41:31.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:31.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:32.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:32.144 -07 000000461 INF: FPGA: Recv ZSGSRD 35442
17-03-18 06:41:32.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:32.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:32.154 -07 000000467 INF: FPGA: Recv ZSGSRD 35448
17-03-18 06:41:32.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:32.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:32.164 -07 000000592 INF: FPGA: Recv ZSGSRD 35446
17-03-18 06:41:32.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:32.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:32.174 -07 000000461 INF: FPGA: Recv ZSGSRD 35445
17-03-18 06:41:32.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:32.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:32.184 -07 000000487 INF: FPGA: Recv ZSGSRD 35447
17-03-18 06:41:32.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:32.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:32.194 -07 000000444 INF: FPGA: Recv ZSGSRD 35447
17-03-18 06:41:32.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:32.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:32.204 -07 000000467 INF: FPGA: Recv ZSGSRD 35457
17-03-18 06:41:32.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:32.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:32.214 -07 000000592 INF: FPGA: Recv ZSGSRD 35446
17-03-18 06:41:32.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:32.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:32.224 -07 000000467 INF: FPGA: Recv ZSGSRD 35443
17-03-18 06:41:32.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:32.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:32.234 -07 000000467 INF: FPGA: Recv ZSGSRD 35448
17-03-18 06:41:32.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:32.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:32.244 -07 000000592 INF: FPGA: Recv ZPIEZORD 31173
17-03-18 06:41:32.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:32.254 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.4 V.
17-03-18 06:41:32.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35447 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35446 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35442 (-167.1 uncal um), Max = 35457 (-167.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:41:32.254 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35447, posNoise = 10, negNoise = 5
17-03-18 06:41:32.254 -07 000000610 INF: Z Motor: After move to -0.168029, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:32.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:41:32.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:32.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:32.254 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:32.254 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:32.254 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:32.254 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:32.254 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:32.254 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:32.254 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:41:32.254 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:32.254 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:41:32.254 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:32.254 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:41:32.264 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:32.264 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:41:32.264 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:32.264 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:41:32.264 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:41:32.274 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:41:32.274 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:41:32.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 36882 150\n [Camera]
17-03-18 06:41:32.474 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:32.934 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-18 06:41:32.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-18 06:41:32.944 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:32.944 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-18 06:41:32.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-18 06:41:32.944 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:32.944 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:32.944 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:41:32.954 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:32.954 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:41:33.134 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36882 849
17-03-18 06:41:33.274 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:41:33.344 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:41:33.344 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:41:33.344 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:33.344 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:33.344 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:41:33.344 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:41:33.344 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:41:33.344 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:33.354 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:33.354 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:41:33.504 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:41:33.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:41:33.504 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:33.504 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:41:33.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:41:33.504 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:33.624 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:33.624 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:41:33.624 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:33.624 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 06:41:33.694 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:41:33.694 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:33.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 36882 150' command took 2 ms to send, 1415 ms to get response, and 1422 ms overall
17-03-18 06:41:33.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:33.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168042399800136. ------
17-03-18 06:41:33.704 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:33.704 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17468 mm
17-03-18 06:41:33.704 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:33.704 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:41:33.704 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38159, sync = True, waitForSettling = False)
17-03-18 06:41:33.704 -07 000000462 INF: Z Motor: Moving to -0.174681 mm, started at -0.168042 mm, distance = -6.64 um
17-03-18 06:41:33.704 -07 000000444 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 06:41:33.704 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:33.714 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:33.714 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:33.714 -07 000000581 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:41:33.724 -07 000000462 INF: FPGA: Xmit ZDACW 38159\n [Z Motor]
17-03-18 06:41:33.724 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:41:33.724 -07 000000444 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:33.724 -07 000000444 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:33.724 -07 000000444 INF: Y Motor: Moving 1341 steps-17
17-03-18 06:41:33.724 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:41:33.734 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:33.734 -07 000000462 INF: FPGA: 'ZDACW 38159' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:41:33.744 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:33.754 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:33.754 -07 000000579 INF: FPGA: Recv ZDACR 38159
17-03-18 06:41:33.764 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:41:33.764 -07 000000462 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 06:41:33.934 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:33.934 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:41:34.024 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:41:34.024 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:41:34.024 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:34.024 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:41:34.024 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:41:34.024 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:34.034 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:41:34.034 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:41:34.034 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-18 06:41:34.034 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-18 06:41:34.114 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 06:41:34.114 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:41:34.174 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:34.174 -07 000000012 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:41:34.184 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:41:34.184 -07 000000444 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:34.184 -07 000000444 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 06:41:34.184 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 06:41:34.924 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.983999,
17-03-18 06:41:35.134 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:35.134 -07 000000462 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:41:35.144 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:35.144 -07 000000444 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:35.184 -07 000000444 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:35.184 -07 000000444 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:41:35.184 -07 000000444 INF: Y Motor: Moved to 69.0264 after 1483 ms (table move)
17-03-18 06:41:35.194 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174681 mm (DAC = 38159)
17-03-18 06:41:35.194 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:35.194 -07 000000502 INF: FPGA: Recv ZSGSRD 36478
17-03-18 06:41:35.204 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:35.204 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:35.204 -07 000000467 INF: FPGA: Recv ZSGSRD 36479
17-03-18 06:41:35.214 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:35.214 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:35.214 -07 000000462 INF: FPGA: Recv ZSGSRD 36477
17-03-18 06:41:35.224 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:35.224 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:35.224 -07 000000462 INF: FPGA: Recv ZSGSRD 36480
17-03-18 06:41:35.234 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:35.234 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:35.234 -07 000000467 INF: FPGA: Recv ZSGSRD 36485
17-03-18 06:41:35.244 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:35.244 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:35.244 -07 000000462 INF: FPGA: Recv ZSGSRD 36491
17-03-18 06:41:35.254 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:35.254 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:35.254 -07 000000444 INF: FPGA: Recv ZSGSRD 36479
17-03-18 06:41:35.264 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:35.264 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:35.264 -07 000000502 INF: FPGA: Recv ZSGSRD 36477
17-03-18 06:41:35.274 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:35.274 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:35.274 -07 000000444 INF: FPGA: Recv ZSGSRD 36478
17-03-18 06:41:35.284 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:35.284 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:35.284 -07 000000462 INF: FPGA: Recv ZSGSRD 36479
17-03-18 06:41:35.294 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:35.294 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:35.294 -07 000000444 INF: FPGA: Recv ZPIEZORD 32557
17-03-18 06:41:35.304 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:35.304 -07 000000487 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.823 V. Piezo Error = -8.7 V.
17-03-18 06:41:35.304 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36480 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36479 (-173.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36477 (-173.8 uncal um), Max = 36491 (-173.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:41:35.304 -07 000000487 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36480, posNoise = 11, negNoise = 3
17-03-18 06:41:35.304 -07 000000487 INF: Z Motor: After move to -0.174681, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:35.304 -07 000000487 INF: Z Motor: Settle wait time = 1486 ms, measure time = 110 ms (allowed 150 ms), total time = 1596 ms
17-03-18 06:41:35.304 -07 000000487 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 06:41:35.344 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 06:41:35.344 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:35.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:35.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:35.344 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:35.344 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:35.344 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:35.344 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:35.344 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:41:35.354 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:35.354 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:35.354 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:35.354 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:41:35.354 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:41:35.364 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:35.404 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:35.704 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:35.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:35.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:35.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 06:41:35.744 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:35.744 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:35.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:41:35.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:41:35.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:35.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:41:35.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:41:35.844 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:35.844 -07 000000462 INF: Autofocus start
17-03-18 06:41:35.844 -07 000000462 INF: MeasureProfile start
17-03-18 06:41:35.844 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:35.854 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:41:35.854 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:35.854 -07 000000462 INF: MeasureProfile done
17-03-18 06:41:35.854 -07 000000462 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:41:35.854 -07 000000462 INF: Autofocus finished
17-03-18 06:41:36.054 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:36.054 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:41:36.054 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.174678610942575. ----------
17-03-18 06:41:36.054 -07 000000610 INF: Cycle	152	Tile	12	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:36.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36656, sync = True, waitForSettling = True)
17-03-18 06:41:36.064 -07 000000610 INF: Z Motor: Moving to -0.167800 mm, started at -0.174679 mm, distance = 6.88 um
17-03-18 06:41:36.064 -07 000000610 INF: FPGA: Xmit ZDACW 36656\n [Z Motor]
17-03-18 06:41:36.064 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 06:41:36.074 -07 000000610 INF: FPGA: 'ZDACW 36656' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:41:36.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:36.074 -07 000000611 INF: FPGA: Recv ZDACR 36656
17-03-18 06:41:36.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:36.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:36.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:36.234 -07 000000502 INF: FPGA: Recv ZSGSRD 35416
17-03-18 06:41:36.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:36.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:36.244 -07 000000585 INF: FPGA: Recv ZSGSRD 35410
17-03-18 06:41:36.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:36.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:36.254 -07 000000487 INF: FPGA: Recv ZSGSRD 35410
17-03-18 06:41:36.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:36.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:36.264 -07 000000611 INF: FPGA: Recv ZSGSRD 35410
17-03-18 06:41:36.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:36.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:36.274 -07 000000585 INF: FPGA: Recv ZSGSRD 35410
17-03-18 06:41:36.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:36.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:36.284 -07 000000611 INF: FPGA: Recv ZSGSRD 35420
17-03-18 06:41:36.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:36.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:36.294 -07 000000585 INF: FPGA: Recv ZSGSRD 35411
17-03-18 06:41:36.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:36.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:36.304 -07 000000467 INF: FPGA: Recv ZSGSRD 35413
17-03-18 06:41:36.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:36.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:36.314 -07 000000585 INF: FPGA: Recv ZSGSRD 35415
17-03-18 06:41:36.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:36.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:36.324 -07 000000487 INF: FPGA: Recv ZSGSRD 35408
17-03-18 06:41:36.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:36.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:36.334 -07 000000585 INF: FPGA: Recv ZPIEZORD 31109
17-03-18 06:41:36.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:36.344 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.593 V. Piezo Error = -9.5 V.
17-03-18 06:41:36.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35412 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35410 (-166.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35408 (-166.9 uncal um), Max = 35420 (-167.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:41:36.344 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35412, posNoise = 8, negNoise = 4
17-03-18 06:41:36.344 -07 000000610 INF: Z Motor: After move to -0.167800, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:36.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:41:36.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:36.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:36.344 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:36.344 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:36.344 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:36.344 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:36.344 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:36.344 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:36.344 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:36.344 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:36.344 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:41:36.344 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:36.354 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:41:36.354 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:36.354 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:41:36.354 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:36.364 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:41:36.364 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:41:36.364 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:41:36.364 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:41:36.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 36833 150\n [Camera]
17-03-18 06:41:36.564 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:36.884 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:41:36.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:41:37.034 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:41:37.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:41:37.034 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:37.034 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:37.034 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:41:37.034 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:41:37.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:41:37.044 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:37.044 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:37.044 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:41:37.224 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36833 849
17-03-18 06:41:37.374 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:41:37.434 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:41:37.434 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:41:37.434 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:37.434 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 06:41:37.434 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:41:37.434 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:37.434 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:37.434 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:41:37.434 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:37.444 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:41:37.594 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:41:37.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:41:37.604 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:37.604 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:37.604 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:41:37.604 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:41:37.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:41:37.604 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:37.604 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:37.604 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) start.
17-03-18 06:41:37.794 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:41:37.794 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:37.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 36833 150' command took 2 ms to send, 1411 ms to get response, and 1422 ms overall
17-03-18 06:41:37.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:37.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.167817552375174. ------
17-03-18 06:41:37.914 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:37.914 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17402 mm
17-03-18 06:41:37.914 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:37.914 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:37.914 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:41:37.914 -07 000000585 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 06:41:37.914 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38016, sync = True, waitForSettling = False)
17-03-18 06:41:37.914 -07 000000487 INF: Z Motor: Moving to -0.174026 mm, started at -0.167818 mm, distance = -6.21 um
17-03-18 06:41:37.924 -07 000000487 INF: FPGA: Xmit ZDACW 38016\n [Z Motor]
17-03-18 06:41:37.924 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:41:37.924 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:41:37.934 -07 000000487 INF: FPGA: 'ZDACW 38016' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:37.934 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:37.934 -07 000000474 INF: FPGA: Recv ZDACR 38016
17-03-18 06:41:37.944 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:37.944 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:37.944 -07 000000487 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 06:41:37.954 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:37.954 -07 000000474 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:41:37.964 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 41 ms overall
17-03-18 06:41:37.964 -07 000000585 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:37.964 -07 000000585 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:37.964 -07 000000585 INF: Y Motor: Moving 1354 steps-33
17-03-18 06:41:37.964 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:37.994 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 06:41:37.994 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:41:37.994 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:37.994 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:41:37.994 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:41:37.994 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:37.994 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:38.004 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:41:38.004 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:41:38.004 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:41:38.144 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:38.144 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:41:38.334 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:41:38.334 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 06:41:38.394 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:38.394 -07 000000467 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:41:38.404 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:38.404 -07 000000585 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:38.404 -07 000000585 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:41:38.404 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.239 mm/sec
17-03-18 06:41:39.354 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:39.354 -07 000000487 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:41:39.364 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:39.364 -07 000000585 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:39.394 -07 000000585 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:39.394 -07 000000585 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:41:39.394 -07 000000585 INF: Y Motor: Moved to 69.8628 after 1473 ms (table move)
17-03-18 06:41:39.394 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174026 mm (DAC = 38016)
17-03-18 06:41:39.394 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:39.394 -07 000000444 INF: FPGA: Recv ZSGSRD 36384
17-03-18 06:41:39.404 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:41:39.404 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:39.404 -07 000000629 INF: FPGA: Recv ZSGSRD 36378
17-03-18 06:41:39.414 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:39.414 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:39.414 -07 000000444 INF: FPGA: Recv ZSGSRD 36375
17-03-18 06:41:39.424 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:39.424 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:39.424 -07 000000444 INF: FPGA: Recv ZSGSRD 36375
17-03-18 06:41:39.434 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:39.434 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:39.434 -07 000000444 INF: FPGA: Recv ZSGSRD 36378
17-03-18 06:41:39.444 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:39.444 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:39.444 -07 000000444 INF: FPGA: Recv ZSGSRD 36378
17-03-18 06:41:39.454 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:39.454 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:39.454 -07 000000487 INF: FPGA: Recv ZSGSRD 36388
17-03-18 06:41:39.464 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:39.464 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:39.464 -07 000000487 INF: FPGA: Recv ZSGSRD 36385
17-03-18 06:41:39.474 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:39.474 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:39.474 -07 000000444 INF: FPGA: Recv ZSGSRD 36385
17-03-18 06:41:39.484 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:39.494 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:39.494 -07 000000012 INF: FPGA: Recv ZSGSRD 36372
17-03-18 06:41:39.504 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:41:39.504 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:39.504 -07 000000012 INF: FPGA: Recv ZPIEZORD 32430
17-03-18 06:41:39.514 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:39.514 -07 000000462 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.801 V. Piezo Error = -8.7 V.
17-03-18 06:41:39.514 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36380 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36378 (-173.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36372 (-173.1 uncal um), Max = 36388 (-173.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:41:39.514 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36380, posNoise = 8, negNoise = 8
17-03-18 06:41:39.514 -07 000000462 INF: Z Motor: After move to -0.174026, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:39.514 -07 000000462 INF: Z Motor: Settle wait time = 1475 ms, measure time = 115 ms (allowed 150 ms), total time = 1590 ms
17-03-18 06:41:39.514 -07 000000462 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 06:41:39.554 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 06:41:39.554 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:39.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:39.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:39.554 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:39.554 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:39.554 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:39.554 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:39.554 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:39.554 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:39.564 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:39.564 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:39.564 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:41:39.564 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:41:39.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:39.614 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:39.914 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:39.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:39.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:39.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:41:39.954 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:39.954 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:39.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:41:40.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 06:41:40.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:40.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:41:40.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:41:40.054 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:40.054 -07 000000462 INF: Autofocus start
17-03-18 06:41:40.054 -07 000000462 INF: MeasureProfile start
17-03-18 06:41:40.064 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:40.064 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:41:40.064 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:40.074 -07 000000462 INF: MeasureProfile done
17-03-18 06:41:40.074 -07 000000462 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:41:40.074 -07 000000462 INF: Autofocus finished
17-03-18 06:41:40.264 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:40.264 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:41:40.264 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174036189728399. ----------
17-03-18 06:41:40.274 -07 000000610 INF: Cycle	152	Tile	13	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:40.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36566, sync = True, waitForSettling = True)
17-03-18 06:41:40.274 -07 000000610 INF: Z Motor: Moving to -0.167388 mm, started at -0.174036 mm, distance = 6.65 um
17-03-18 06:41:40.284 -07 000000610 INF: FPGA: Xmit ZDACW 36566\n [Z Motor]
17-03-18 06:41:40.284 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.989471,
17-03-18 06:41:40.284 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:41:40.294 -07 000000610 INF: FPGA: 'ZDACW 36566' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:41:40.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:40.294 -07 000000012 INF: FPGA: Recv ZDACR 36566
17-03-18 06:41:40.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:40.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:40.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:40.454 -07 000000430 INF: FPGA: Recv ZSGSRD 35349
17-03-18 06:41:40.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:40.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:40.464 -07 000000430 INF: FPGA: Recv ZSGSRD 35348
17-03-18 06:41:40.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:40.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:40.474 -07 000000012 INF: FPGA: Recv ZSGSRD 35340
17-03-18 06:41:40.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:40.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:40.484 -07 000000585 INF: FPGA: Recv ZSGSRD 35347
17-03-18 06:41:40.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:40.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:40.494 -07 000000444 INF: FPGA: Recv ZSGSRD 35352
17-03-18 06:41:40.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:40.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:40.504 -07 000000585 INF: FPGA: Recv ZSGSRD 35346
17-03-18 06:41:40.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:40.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:40.514 -07 000000462 INF: FPGA: Recv ZSGSRD 35343
17-03-18 06:41:40.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:40.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:40.524 -07 000000462 INF: FPGA: Recv ZSGSRD 35347
17-03-18 06:41:40.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:40.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:40.534 -07 000000462 INF: FPGA: Recv ZSGSRD 35349
17-03-18 06:41:40.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:40.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:40.544 -07 000000444 INF: FPGA: Recv ZSGSRD 35343
17-03-18 06:41:40.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:40.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:40.554 -07 000000585 INF: FPGA: Recv ZPIEZORD 31053
17-03-18 06:41:40.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:40.564 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.580 V. Piezo Error = -9.5 V.
17-03-18 06:41:40.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35346 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35347 (-166.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35340 (-166.5 uncal um), Max = 35352 (-166.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:41:40.564 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35346, posNoise = 6, negNoise = 6
17-03-18 06:41:40.564 -07 000000610 INF: Z Motor: After move to -0.167388, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:40.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-18 06:41:40.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:40.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:40.564 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:40.564 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:40.564 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:40.564 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:40.564 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:41:40.564 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:40.564 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:40.564 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:40.564 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:40.564 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:40.574 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:41:40.574 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:40.574 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:40.574 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:40.584 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:41:40.584 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:41:40.584 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 06:41:40.584 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:41:40.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 36743 150\n [Camera]
17-03-18 06:41:40.784 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:41.254 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:41:41.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:41:41.254 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:41.254 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:41:41.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:41:41.254 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:41.254 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:41.254 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 06:41:41.264 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:41.264 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:41:41.444 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36743 849
17-03-18 06:41:41.594 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:41:41.644 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:41:41.644 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:41:41.644 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:41.644 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:41:41.644 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:41:41.644 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:41.644 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:41:41.644 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:41:41.644 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:41:41.654 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:41:41.814 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:41:41.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:41:41.824 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:41.824 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:41:41.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:41:41.824 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:41.824 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 06:41:41.824 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:41.824 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:41.824 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 06:41:41.884 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:41:41.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:41:42.014 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1416
17-03-18 06:41:42.014 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:42.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 36743 150' command took 2 ms to send, 1412 ms to get response, and 1423 ms overall
17-03-18 06:41:42.014 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:42.014 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167393554373818. ------
17-03-18 06:41:42.014 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:42.014 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17380 mm
17-03-18 06:41:42.014 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:42.024 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:42.024 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:41:42.024 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:42.024 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 37967, sync = True, waitForSettling = False)
17-03-18 06:41:42.024 -07 000000474 INF: Z Motor: Moving to -0.173802 mm, started at -0.167394 mm, distance = -6.41 um
17-03-18 06:41:42.024 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:41:42.024 -07 000000382 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 06:41:42.034 -07 000000474 INF: FPGA: Xmit ZDACW 37967\n [Z Motor]
17-03-18 06:41:42.034 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:41:42.044 -07 000000474 INF: FPGA: 'ZDACW 37967' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:41:42.044 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:42.044 -07 000000629 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:41:42.054 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:41:42.054 -07 000000382 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:42.054 -07 000000382 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:42.054 -07 000000382 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:41:42.054 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:42.054 -07 000000611 INF: FPGA: Recv ZDACR 37967
17-03-18 06:41:42.064 -07 000000474 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:41:42.064 -07 000000474 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:41:42.064 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:42.224 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:42.224 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:41:42.224 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:41:42.224 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:41:42.224 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:42.224 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:41:42.224 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:41:42.224 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:42.234 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:41:42.234 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:41:42.234 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:41:42.234 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:41:42.434 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:41:42.434 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 389 ms overall
17-03-18 06:41:42.494 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:42.494 -07 000000444 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:41:42.504 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:42.504 -07 000000382 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:42.504 -07 000000382 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:41:42.504 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.840 mm, average velocity = 2.159 mm/sec
17-03-18 06:41:43.454 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:43.454 -07 000000629 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:41:43.464 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:43.464 -07 000000382 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:43.494 -07 000000382 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:43.494 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:41:43.494 -07 000000382 INF: Y Motor: Moved to 70.6880 after 1468 ms (table move)
17-03-18 06:41:43.494 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173802 mm (DAC = 37967)
17-03-18 06:41:43.494 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:43.494 -07 000000576 INF: FPGA: Recv ZSGSRD 36347
17-03-18 06:41:43.504 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:41:43.504 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:43.504 -07 000000462 INF: FPGA: Recv ZSGSRD 36346
17-03-18 06:41:43.514 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:43.514 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:43.514 -07 000000444 INF: FPGA: Recv ZSGSRD 36339
17-03-18 06:41:43.524 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:43.524 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:43.524 -07 000000474 INF: FPGA: Recv ZSGSRD 36345
17-03-18 06:41:43.534 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:43.534 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:43.534 -07 000000467 INF: FPGA: Recv ZSGSRD 36340
17-03-18 06:41:43.544 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:43.544 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:43.544 -07 000000576 INF: FPGA: Recv ZSGSRD 36349
17-03-18 06:41:43.554 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:43.554 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:43.554 -07 000000461 INF: FPGA: Recv ZSGSRD 36350
17-03-18 06:41:43.564 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:43.564 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:43.564 -07 000000382 INF: FPGA: Recv ZSGSRD 36342
17-03-18 06:41:43.574 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:43.574 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:43.574 -07 000000012 INF: FPGA: Recv ZSGSRD 36349
17-03-18 06:41:43.584 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:43.584 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:43.584 -07 000000444 INF: FPGA: Recv ZSGSRD 36340
17-03-18 06:41:43.594 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:43.594 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:43.594 -07 000000462 INF: FPGA: Recv ZPIEZORD 32403
17-03-18 06:41:43.604 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:43.604 -07 000000430 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.793 V. Piezo Error = -8.7 V.
17-03-18 06:41:43.604 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36345 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36346 (-172.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36339 (-172.9 uncal um), Max = 36350 (-173.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:41:43.604 -07 000000430 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36345, posNoise = 5, negNoise = 6
17-03-18 06:41:43.604 -07 000000430 INF: Z Motor: After move to -0.173802, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:43.604 -07 000000430 INF: Z Motor: Settle wait time = 1472 ms, measure time = 106 ms (allowed 150 ms), total time = 1578 ms
17-03-18 06:41:43.604 -07 000000430 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:41:43.654 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 06:41:43.654 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:43.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:43.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:43.654 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:43.654 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:43.654 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:43.654 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:43.664 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:41:43.664 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:43.664 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:43.664 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:43.674 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:41:43.674 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:41:43.674 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:43.714 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:44.014 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:44.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:44.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:44.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) start.
17-03-18 06:41:44.054 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:44.054 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:44.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:41:44.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 06:41:44.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:44.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:41:44.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:41:44.154 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:44.154 -07 000000502 INF: Autofocus start
17-03-18 06:41:44.154 -07 000000502 INF: MeasureProfile start
17-03-18 06:41:44.154 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:44.164 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:41:44.164 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:44.164 -07 000000502 INF: MeasureProfile done
17-03-18 06:41:44.164 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:41:44.164 -07 000000502 INF: Autofocus finished
17-03-18 06:41:44.364 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:44.364 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:41:44.364 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173811342303437. ----------
17-03-18 06:41:44.374 -07 000000610 INF: Cycle	152	Tile	14	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:44.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36464, sync = True, waitForSettling = True)
17-03-18 06:41:44.374 -07 000000610 INF: Z Motor: Moving to -0.166921 mm, started at -0.173811 mm, distance = 6.89 um
17-03-18 06:41:44.374 -07 000000610 INF: FPGA: Xmit ZDACW 36464\n [Z Motor]
17-03-18 06:41:44.374 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:41:44.384 -07 000000610 INF: FPGA: 'ZDACW 36464' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:41:44.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:44.384 -07 000000502 INF: FPGA: Recv ZDACR 36464
17-03-18 06:41:44.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:44.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:44.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:44.544 -07 000000502 INF: FPGA: Recv ZSGSRD 35269
17-03-18 06:41:44.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:44.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:44.554 -07 000000487 INF: FPGA: Recv ZSGSRD 35277
17-03-18 06:41:44.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:41:44.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:44.564 -07 000000461 INF: FPGA: Recv ZSGSRD 35276
17-03-18 06:41:44.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:44.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:44.574 -07 000000502 INF: FPGA: Recv ZSGSRD 35274
17-03-18 06:41:44.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:44.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:44.584 -07 000000487 INF: FPGA: Recv ZSGSRD 35269
17-03-18 06:41:44.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:44.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:44.594 -07 000000424 INF: FPGA: Recv ZSGSRD 35272
17-03-18 06:41:44.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:44.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:44.604 -07 000000461 INF: FPGA: Recv ZSGSRD 35278
17-03-18 06:41:44.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:44.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:44.614 -07 000000424 INF: FPGA: Recv ZSGSRD 35273
17-03-18 06:41:44.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:44.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:44.624 -07 000000424 INF: FPGA: Recv ZSGSRD 35278
17-03-18 06:41:44.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:44.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:44.634 -07 000000611 INF: FPGA: Recv ZSGSRD 35275
17-03-18 06:41:44.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:44.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:44.644 -07 000000611 INF: FPGA: Recv ZPIEZORD 30960
17-03-18 06:41:44.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:44.654 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.564 V. Piezo Error = -9.5 V.
17-03-18 06:41:44.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35274 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35274 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35269 (-166.0 uncal um), Max = 35278 (-166.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:41:44.654 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35274, posNoise = 4, negNoise = 5
17-03-18 06:41:44.654 -07 000000610 INF: Z Motor: After move to -0.166921, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:44.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:41:44.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:44.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:44.654 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:44.654 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:44.654 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:44.654 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:44.654 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:44.654 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:44.654 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:41:44.654 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:44.654 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:44.654 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:44.664 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:41:44.664 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:44.664 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:41:44.664 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:44.664 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:41:44.664 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:41:44.674 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:41:44.674 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:41:44.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 36641 150\n [Camera]
17-03-18 06:41:44.874 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:45.334 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:41:45.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:41:45.344 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:45.344 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:45.344 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:41:45.344 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:41:45.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:41:45.344 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:45.344 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:45.344 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:41:45.534 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36641 849
17-03-18 06:41:45.664 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.005817,
17-03-18 06:41:45.674 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:41:45.734 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:41:45.734 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:41:45.734 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:45.744 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:45.744 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:41:45.744 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:41:45.744 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:41:45.744 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:45.744 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:45.754 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:41:45.904 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:41:45.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:41:45.904 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:45.904 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:45.904 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:41:45.904 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:41:45.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:41:45.904 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:45.904 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:45.904 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:41:46.094 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:41:46.094 -07 000000592 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:46.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 36641 150' command took 2 ms to send, 1415 ms to get response, and 1421 ms overall
17-03-18 06:41:46.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:46.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.166931011099611. ------
17-03-18 06:41:46.104 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:46.104 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17362 mm
17-03-18 06:41:46.104 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:46.104 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:46.104 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:41:46.104 -07 000000611 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 06:41:46.104 -07 000000592 INF: Z Motor: Entering MoveAbsStepped (DAC = 37928, sync = True, waitForSettling = False)
17-03-18 06:41:46.104 -07 000000592 INF: Z Motor: Moving to -0.173623 mm, started at -0.166931 mm, distance = -6.69 um
17-03-18 06:41:46.114 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:46.114 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:46.114 -07 000000461 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:41:46.124 -07 000000592 INF: FPGA: Xmit ZDACW 37928\n [Z Motor]
17-03-18 06:41:46.124 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:41:46.124 -07 000000611 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:46.124 -07 000000611 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:46.124 -07 000000611 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:41:46.244 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:46.244 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:41:46.244 -07 000000592 INF: FPGA: 'ZDACW 37928' command took 0 ms to send, 0 ms to get response, and 136 ms overall
17-03-18 06:41:46.254 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:46.264 -07 000000592 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:46.264 -07 000000382 INF: FPGA: Recv ZDACR 37928
17-03-18 06:41:46.274 -07 000000592 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:41:46.274 -07 000000592 INF: Z Motor: MoveAbsStepped took 165 ms (did NOT wait for settling yet))
17-03-18 06:41:46.304 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:41:46.304 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:41:46.304 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:46.304 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:41:46.304 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:41:46.304 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:46.314 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:46.314 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:41:46.314 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:41:46.314 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:41:46.444 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:46.444 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 333 ms overall
17-03-18 06:41:46.624 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 06:41:46.624 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:41:46.684 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:46.684 -07 000000592 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:41:46.694 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:41:46.694 -07 000000611 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:46.694 -07 000000611 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:41:46.694 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 507 ms, distance = 0.845 mm, average velocity = 1.666 mm/sec
17-03-18 06:41:46.884 -07 000000592 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:41:46.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:41:47.644 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:47.644 -07 000000585 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:41:47.654 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:47.654 -07 000000611 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:47.694 -07 000000611 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:47.694 -07 000000611 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:41:47.694 -07 000000611 INF: Y Motor: Moved to 71.5186 after 1589 ms (table move)
17-03-18 06:41:47.694 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173623 mm (DAC = 37928)
17-03-18 06:41:47.694 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:47.704 -07 000000579 INF: FPGA: Recv ZSGSRD 36315
17-03-18 06:41:47.704 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:41:47.704 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:47.704 -07 000000629 INF: FPGA: Recv ZSGSRD 36316
17-03-18 06:41:47.714 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:47.714 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:47.714 -07 000000487 INF: FPGA: Recv ZSGSRD 36314
17-03-18 06:41:47.724 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:47.724 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:47.724 -07 000000474 INF: FPGA: Recv ZSGSRD 36309
17-03-18 06:41:47.734 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:47.734 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:47.734 -07 000000629 INF: FPGA: Recv ZSGSRD 36314
17-03-18 06:41:47.744 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:47.744 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:47.744 -07 000000444 INF: FPGA: Recv ZSGSRD 36317
17-03-18 06:41:47.754 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:47.754 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:47.754 -07 000000467 INF: FPGA: Recv ZSGSRD 36318
17-03-18 06:41:47.764 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:47.764 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:47.764 -07 000000579 INF: FPGA: Recv ZSGSRD 36324
17-03-18 06:41:47.774 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:47.774 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:47.774 -07 000000581 INF: FPGA: Recv ZSGSRD 36314
17-03-18 06:41:47.784 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:47.784 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:47.784 -07 000000592 INF: FPGA: Recv ZSGSRD 36321
17-03-18 06:41:47.794 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:47.794 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:47.794 -07 000000576 INF: FPGA: Recv ZPIEZORD 32378
17-03-18 06:41:47.804 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:47.804 -07 000000424 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.787 V. Piezo Error = -8.7 V.
17-03-18 06:41:47.804 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36316 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36316 (-172.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36309 (-172.7 uncal um), Max = 36324 (-172.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:41:47.804 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36316, posNoise = 8, negNoise = 7
17-03-18 06:41:47.804 -07 000000424 INF: Z Motor: After move to -0.173623, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:47.804 -07 000000424 INF: Z Motor: Settle wait time = 1591 ms, measure time = 104 ms (allowed 150 ms), total time = 1695 ms
17-03-18 06:41:47.804 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:41:47.854 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1749 ms
17-03-18 06:41:47.854 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:47.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:47.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:47.854 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:47.854 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:47.854 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:47.854 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:47.854 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:47.864 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:47.864 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:41:47.864 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:47.874 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:41:47.874 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:41:47.874 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:47.914 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:48.214 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:48.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:48.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:48.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:41:48.254 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:48.254 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:48.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:41:48.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:41:48.334 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:48.334 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:41:48.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:41:48.354 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:48.354 -07 000000611 INF: Autofocus start
17-03-18 06:41:48.354 -07 000000611 INF: MeasureProfile start
17-03-18 06:41:48.354 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:48.364 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:41:48.364 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:48.364 -07 000000611 INF: MeasureProfile done
17-03-18 06:41:48.364 -07 000000611 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:41:48.364 -07 000000611 INF: Autofocus finished
17-03-18 06:41:48.564 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:48.564 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 06:41:48.564 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173625040151326. ----------
17-03-18 06:41:48.564 -07 000000610 INF: Cycle	152	Tile	15	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:48.574 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36478, sync = True, waitForSettling = True)
17-03-18 06:41:48.574 -07 000000610 INF: Z Motor: Moving to -0.166986 mm, started at -0.173625 mm, distance = 6.64 um
17-03-18 06:41:48.574 -07 000000610 INF: FPGA: Xmit ZDACW 36478\n [Z Motor]
17-03-18 06:41:48.574 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:41:48.584 -07 000000610 INF: FPGA: 'ZDACW 36478' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:48.584 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:48.584 -07 000000611 INF: FPGA: Recv ZDACR 36478
17-03-18 06:41:48.594 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:48.594 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:48.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:48.744 -07 000000611 INF: FPGA: Recv ZSGSRD 35284
17-03-18 06:41:48.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:48.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:48.754 -07 000000487 INF: FPGA: Recv ZSGSRD 35283
17-03-18 06:41:48.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:48.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:48.764 -07 000000487 INF: FPGA: Recv ZSGSRD 35284
17-03-18 06:41:48.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:48.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:48.774 -07 000000585 INF: FPGA: Recv ZSGSRD 35284
17-03-18 06:41:48.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:48.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:48.784 -07 000000585 INF: FPGA: Recv ZSGSRD 35287
17-03-18 06:41:48.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:48.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:48.794 -07 000000611 INF: FPGA: Recv ZSGSRD 35281
17-03-18 06:41:48.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:48.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:48.804 -07 000000592 INF: FPGA: Recv ZSGSRD 35291
17-03-18 06:41:48.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:48.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:48.814 -07 000000592 INF: FPGA: Recv ZSGSRD 35288
17-03-18 06:41:48.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:48.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:48.824 -07 000000487 INF: FPGA: Recv ZSGSRD 35281
17-03-18 06:41:48.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:48.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:48.834 -07 000000592 INF: FPGA: Recv ZSGSRD 35285
17-03-18 06:41:48.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:48.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:48.844 -07 000000474 INF: FPGA: Recv ZPIEZORD 30978
17-03-18 06:41:48.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:48.854 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -9.5 V.
17-03-18 06:41:48.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35285 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35284 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35281 (-166.1 uncal um), Max = 35291 (-166.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:41:48.854 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35285, posNoise = 6, negNoise = 4
17-03-18 06:41:48.854 -07 000000610 INF: Z Motor: After move to -0.166986, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:48.854 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:41:48.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:48.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:48.854 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:48.854 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:48.854 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:48.854 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:48.854 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:48.854 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:48.854 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:48.854 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:48.854 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:41:48.854 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:48.854 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:48.854 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:48.864 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:41:48.864 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:48.874 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:41:48.874 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:41:48.874 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:41:48.874 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:41:48.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 36655 150\n [Camera]
17-03-18 06:41:49.074 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:49.544 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-18 06:41:49.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-18 06:41:49.544 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:49.544 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-18 06:41:49.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-18 06:41:49.544 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:49.544 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:49.544 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 06:41:49.554 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:49.554 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) start.
17-03-18 06:41:49.734 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36655 849
17-03-18 06:41:49.884 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:41:49.944 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:41:49.944 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:41:49.944 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:49.944 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:49.944 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:41:49.944 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 06:41:49.944 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:41:49.944 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:49.954 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:49.954 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:41:50.104 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:41:50.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:41:50.104 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:50.114 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:41:50.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:41:50.114 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:50.114 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:50.114 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:41:50.124 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:50.124 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:41:50.294 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:41:50.294 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:50.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 36655 150' command took 2 ms to send, 1409 ms to get response, and 1422 ms overall
17-03-18 06:41:50.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:50.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.16700167743317. ------
17-03-18 06:41:50.424 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:50.424 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17338 mm
17-03-18 06:41:50.424 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:50.434 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:41:50.434 -07 000000579 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 06:41:50.434 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:50.434 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:50.434 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:41:50.434 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37875, sync = True, waitForSettling = False)
17-03-18 06:41:50.434 -07 000000611 INF: Z Motor: Moving to -0.173381 mm, started at -0.167002 mm, distance = -6.38 um
17-03-18 06:41:50.434 -07 000000382 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:41:50.444 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:50.444 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:41:50.444 -07 000000579 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:50.444 -07 000000579 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:50.444 -07 000000579 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:41:50.454 -07 000000611 INF: FPGA: Xmit ZDACW 37875\n [Z Motor]
17-03-18 06:41:50.454 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:41:50.464 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:50.464 -07 000000611 INF: FPGA: 'ZDACW 37875' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:41:50.474 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:50.474 -07 000000487 INF: FPGA: Recv ZDACR 37875
17-03-18 06:41:50.484 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:41:50.484 -07 000000611 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 06:41:50.504 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:41:50.504 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:41:50.504 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:50.514 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:50.514 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:41:50.514 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:41:50.514 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:41:50.514 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:50.514 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:50.524 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:41:50.644 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:50.644 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-18 06:41:50.844 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 06:41:50.844 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 06:41:50.894 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:50.894 -07 000000382 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:41:50.904 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:41:50.904 -07 000000579 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:50.904 -07 000000579 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 06:41:50.904 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.844 mm, average velocity = 2.105 mm/sec
17-03-18 06:41:51.024 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.988112,
17-03-18 06:41:51.854 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:51.854 -07 000000592 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:41:51.864 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:51.864 -07 000000579 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:51.884 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:41:51.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:41:51.894 -07 000000579 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:51.894 -07 000000579 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:41:51.894 -07 000000579 INF: Y Motor: Moved to 72.3491 after 1463 ms (table move)
17-03-18 06:41:51.894 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173381 mm (DAC = 37875)
17-03-18 06:41:51.894 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:51.904 -07 000000461 INF: FPGA: Recv ZSGSRD 36280
17-03-18 06:41:51.904 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:41:51.904 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:51.904 -07 000000592 INF: FPGA: Recv ZSGSRD 36273
17-03-18 06:41:51.914 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:41:51.914 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:51.914 -07 000000592 INF: FPGA: Recv ZSGSRD 36276
17-03-18 06:41:51.924 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:51.924 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:51.924 -07 000000461 INF: FPGA: Recv ZSGSRD 36281
17-03-18 06:41:51.934 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:51.934 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:51.934 -07 000000461 INF: FPGA: Recv ZSGSRD 36277
17-03-18 06:41:51.944 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:51.944 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:51.944 -07 000000461 INF: FPGA: Recv ZSGSRD 36279
17-03-18 06:41:51.954 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:51.954 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:51.954 -07 000000461 INF: FPGA: Recv ZSGSRD 36285
17-03-18 06:41:51.964 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:51.964 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:51.964 -07 000000461 INF: FPGA: Recv ZSGSRD 36288
17-03-18 06:41:51.974 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:51.974 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:51.974 -07 000000461 INF: FPGA: Recv ZSGSRD 36283
17-03-18 06:41:51.984 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:51.984 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:51.984 -07 000000461 INF: FPGA: Recv ZSGSRD 36275
17-03-18 06:41:51.994 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:51.994 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:51.994 -07 000000461 INF: FPGA: Recv ZPIEZORD 32358
17-03-18 06:41:52.004 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:52.004 -07 000000462 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.779 V. Piezo Error = -8.7 V.
17-03-18 06:41:52.004 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36280 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36280 (-172.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36273 (-172.5 uncal um), Max = 36288 (-172.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:41:52.004 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36280, posNoise = 8, negNoise = 7
17-03-18 06:41:52.004 -07 000000462 INF: Z Motor: After move to -0.173381, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:52.004 -07 000000462 INF: Z Motor: Settle wait time = 1465 ms, measure time = 103 ms (allowed 150 ms), total time = 1568 ms
17-03-18 06:41:52.004 -07 000000462 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:41:52.054 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 06:41:52.054 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:52.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:52.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:52.054 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:52.054 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:52.054 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:52.054 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:52.054 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:52.054 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:52.064 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:52.064 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:52.064 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:41:52.064 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:41:52.074 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:52.114 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:52.414 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:52.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:52.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:52.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:41:52.454 -07 000000382 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:52.454 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:52.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:41:52.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 06:41:52.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:52.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:41:52.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:41:52.654 -07 000000611 INF: Autofocus start
17-03-18 06:41:52.654 -07 000000611 INF: MeasureProfile start
17-03-18 06:41:52.654 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:52.654 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:52.664 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:41:52.664 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:52.664 -07 000000611 INF: MeasureProfile done
17-03-18 06:41:52.664 -07 000000611 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:41:52.664 -07 000000611 INF: Autofocus finished
17-03-18 06:41:52.864 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:52.864 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:41:52.864 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173393768514222. ----------
17-03-18 06:41:52.864 -07 000000610 INF: Cycle	152	Tile	16	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:52.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36372, sync = True, waitForSettling = True)
17-03-18 06:41:52.874 -07 000000610 INF: Z Motor: Moving to -0.166500 mm, started at -0.173394 mm, distance = 6.89 um
17-03-18 06:41:52.874 -07 000000610 INF: FPGA: Xmit ZDACW 36372\n [Z Motor]
17-03-18 06:41:52.874 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:41:52.884 -07 000000610 INF: FPGA: 'ZDACW 36372' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:41:52.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:52.884 -07 000000430 INF: FPGA: Recv ZDACR 36372
17-03-18 06:41:52.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:52.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:53.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:53.044 -07 000000474 INF: FPGA: Recv ZSGSRD 35211
17-03-18 06:41:53.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:53.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:53.054 -07 000000430 INF: FPGA: Recv ZSGSRD 35210
17-03-18 06:41:53.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:53.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:53.064 -07 000000576 INF: FPGA: Recv ZSGSRD 35209
17-03-18 06:41:53.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:53.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:53.074 -07 000000576 INF: FPGA: Recv ZSGSRD 35207
17-03-18 06:41:53.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:53.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:53.084 -07 000000611 INF: FPGA: Recv ZSGSRD 35205
17-03-18 06:41:53.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:53.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:53.094 -07 000000382 INF: FPGA: Recv ZSGSRD 35213
17-03-18 06:41:53.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:53.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:53.104 -07 000000474 INF: FPGA: Recv ZSGSRD 35206
17-03-18 06:41:53.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:53.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:53.114 -07 000000382 INF: FPGA: Recv ZSGSRD 35205
17-03-18 06:41:53.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:53.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:53.124 -07 000000611 INF: FPGA: Recv ZSGSRD 35207
17-03-18 06:41:53.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:53.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:53.134 -07 000000576 INF: FPGA: Recv ZSGSRD 35209
17-03-18 06:41:53.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:53.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:53.144 -07 000000611 INF: FPGA: Recv ZPIEZORD 30910
17-03-18 06:41:53.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:53.154 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.550 V. Piezo Error = -9.5 V.
17-03-18 06:41:53.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35208 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35208 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35205 (-165.6 uncal um), Max = 35213 (-165.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:41:53.154 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35208, posNoise = 5, negNoise = 3
17-03-18 06:41:53.154 -07 000000610 INF: Z Motor: After move to -0.166500, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:53.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:41:53.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:53.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:53.154 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:53.154 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:53.154 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:53.154 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:53.154 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:53.154 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:53.154 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:41:53.154 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:53.154 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:41:53.154 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:53.164 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:53.164 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:53.164 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:41:53.164 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:53.174 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 06:41:53.174 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 06:41:53.174 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:41:53.174 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:41:53.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 36549 150\n [Camera]
17-03-18 06:41:53.384 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:53.844 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:41:53.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:41:53.844 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:53.844 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:41:53.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:41:53.844 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:53.844 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:53.844 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:41:53.854 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:53.854 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 06:41:54.034 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36549 849
17-03-18 06:41:54.184 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:41:54.244 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:41:54.244 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:41:54.244 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:54.254 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:41:54.254 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:41:54.254 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:54.254 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:54.254 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:41:54.254 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:54.264 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:41:54.414 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:41:54.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:41:54.414 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:54.414 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:54.414 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2619884792, 0x0, 391868352) start.
17-03-18 06:41:54.414 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:41:54.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:41:54.414 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:54.414 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:54.414 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 06:41:54.604 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:41:54.604 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:54.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 36549 150' command took 2 ms to send, 1412 ms to get response, and 1422 ms overall
17-03-18 06:41:54.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:54.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166507013098255. ------
17-03-18 06:41:54.604 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:54.604 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17294 mm
17-03-18 06:41:54.604 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:54.614 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:41:54.614 -07 000000576 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 06:41:54.614 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:54.814 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2619884792, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:41:54.814 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:41:54.814 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:54.814 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:41:54.814 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:41:54.814 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:54.824 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:41:54.824 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:41:54.824 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:54.824 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:41:54.834 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37778, sync = True, waitForSettling = False)
17-03-18 06:41:54.834 -07 000000430 INF: Z Motor: Moving to -0.172937 mm, started at -0.166507 mm, distance = -6.43 um
17-03-18 06:41:54.834 -07 000000430 INF: FPGA: Xmit ZDACW 37778\n [Z Motor]
17-03-18 06:41:54.834 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:54.834 -07 000000474 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:41:54.834 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 229 ms to get response, and 231 ms overall
17-03-18 06:41:54.834 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:41:54.844 -07 000000430 INF: FPGA: 'ZDACW 37778' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:41:54.844 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 219 ms to get response, and 226 ms overall
17-03-18 06:41:54.844 -07 000000576 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:54.844 -07 000000576 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:54.844 -07 000000576 INF: Y Motor: Moving 1350 steps-28
17-03-18 06:41:54.844 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:54.854 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:54.864 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:54.864 -07 000000474 INF: FPGA: Recv ZDACR 37778
17-03-18 06:41:54.874 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:41:54.874 -07 000000430 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:41:55.044 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:55.044 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 06:41:55.224 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 06:41:55.224 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:41:55.274 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:55.284 -07 000000581 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:41:55.284 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:41:55.284 -07 000000576 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:55.284 -07 000000576 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 06:41:55.284 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.180 mm/sec
17-03-18 06:41:56.234 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:56.234 -07 000000629 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:41:56.244 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:56.244 -07 000000576 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:56.274 -07 000000576 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:41:56.274 -07 000000576 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:41:56.274 -07 000000576 INF: Y Motor: Moved to 73.1753 after 1661 ms (table move)
17-03-18 06:41:56.274 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172937 mm (DAC = 37778)
17-03-18 06:41:56.274 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:56.284 -07 000000502 INF: FPGA: Recv ZSGSRD 36213
17-03-18 06:41:56.284 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:41:56.284 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:56.284 -07 000000424 INF: FPGA: Recv ZSGSRD 36210
17-03-18 06:41:56.294 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:56.294 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:56.294 -07 000000502 INF: FPGA: Recv ZSGSRD 36212
17-03-18 06:41:56.304 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:56.304 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:56.304 -07 000000382 INF: FPGA: Recv ZSGSRD 36210
17-03-18 06:41:56.314 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:56.314 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:56.314 -07 000000474 INF: FPGA: Recv ZSGSRD 36212
17-03-18 06:41:56.324 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:56.334 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:56.334 -07 000000576 INF: FPGA: Recv ZSGSRD 36212
17-03-18 06:41:56.344 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:41:56.344 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:56.344 -07 000000424 INF: FPGA: Recv ZSGSRD 36203
17-03-18 06:41:56.354 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:56.354 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:56.354 -07 000000382 INF: FPGA: Recv ZSGSRD 36206
17-03-18 06:41:56.364 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:56.364 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:56.364 -07 000000430 INF: FPGA: Recv ZSGSRD 36213
17-03-18 06:41:56.374 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:56.384 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:56.384 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.983999,
17-03-18 06:41:56.384 -07 000000629 INF: FPGA: Recv ZSGSRD 36219
17-03-18 06:41:56.394 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:41:56.404 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:56.404 -07 000000430 INF: FPGA: Recv ZPIEZORD 32259
17-03-18 06:41:56.414 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:41:56.414 -07 000000611 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.765 V. Piezo Error = -8.7 V.
17-03-18 06:41:56.414 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36211 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36212 (-172.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36203 (-172.0 uncal um), Max = 36219 (-172.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:41:56.414 -07 000000611 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36211, posNoise = 8, negNoise = 8
17-03-18 06:41:56.414 -07 000000611 INF: Z Motor: After move to -0.172937, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:56.414 -07 000000611 INF: Z Motor: Settle wait time = 1443 ms, measure time = 134 ms (allowed 150 ms), total time = 1577 ms
17-03-18 06:41:56.414 -07 000000611 INF: Z Motor: Waiting extra 16 ms after reading position to reach expected total of 150 ms
17-03-18 06:41:56.434 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1822 ms
17-03-18 06:41:56.434 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:41:56.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:56.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:56.434 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:56.434 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:56.434 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:41:56.434 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:56.434 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:41:56.434 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:41:56.444 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:41:56.444 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:41:56.444 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:41:56.444 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:41:56.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:41:56.494 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:41:56.794 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:41:56.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:41:56.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:41:56.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) start.
17-03-18 06:41:56.834 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:41:56.834 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:41:56.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:41:56.884 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:41:56.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 06:41:56.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:56.924 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:41:56.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 06:41:56.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:41:56.934 -07 000000581 INF: Autofocus start
17-03-18 06:41:56.934 -07 000000581 INF: MeasureProfile start
17-03-18 06:41:56.934 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:56.934 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:56.944 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:41:56.944 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:41:56.954 -07 000000581 INF: MeasureProfile done
17-03-18 06:41:56.954 -07 000000581 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:41:56.954 -07 000000581 INF: Autofocus finished
17-03-18 06:41:57.144 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:41:57.144 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 06:41:57.144 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.172950497876441. ----------
17-03-18 06:41:57.144 -07 000000610 INF: Cycle	152	Tile	17	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:41:57.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36275, sync = True, waitForSettling = True)
17-03-18 06:41:57.154 -07 000000610 INF: Z Motor: Moving to -0.166056 mm, started at -0.172950 mm, distance = 6.89 um
17-03-18 06:41:57.154 -07 000000610 INF: FPGA: Xmit ZDACW 36275\n [Z Motor]
17-03-18 06:41:57.154 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:41:57.164 -07 000000610 INF: FPGA: 'ZDACW 36275' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:41:57.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:57.164 -07 000000430 INF: FPGA: Recv ZDACR 36275
17-03-18 06:41:57.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:57.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:41:57.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:57.324 -07 000000611 INF: FPGA: Recv ZSGSRD 35141
17-03-18 06:41:57.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:41:57.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:57.334 -07 000000576 INF: FPGA: Recv ZSGSRD 35138
17-03-18 06:41:57.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:57.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:57.344 -07 000000474 INF: FPGA: Recv ZSGSRD 35140
17-03-18 06:41:57.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:57.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:57.354 -07 000000430 INF: FPGA: Recv ZSGSRD 35138
17-03-18 06:41:57.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:57.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:57.364 -07 000000629 INF: FPGA: Recv ZSGSRD 35142
17-03-18 06:41:57.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:57.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:57.374 -07 000000502 INF: FPGA: Recv ZSGSRD 35140
17-03-18 06:41:57.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:57.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:57.384 -07 000000474 INF: FPGA: Recv ZSGSRD 35137
17-03-18 06:41:57.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:57.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:57.394 -07 000000382 INF: FPGA: Recv ZSGSRD 35138
17-03-18 06:41:57.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:57.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:57.404 -07 000000474 INF: FPGA: Recv ZSGSRD 35137
17-03-18 06:41:57.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:57.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:41:57.414 -07 000000424 INF: FPGA: Recv ZSGSRD 35140
17-03-18 06:41:57.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:57.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:41:57.424 -07 000000474 INF: FPGA: Recv ZPIEZORD 30834
17-03-18 06:41:57.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:57.434 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.535 V. Piezo Error = -9.5 V.
17-03-18 06:41:57.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35139 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35139 (-165.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35137 (-165.2 uncal um), Max = 35142 (-165.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:41:57.434 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35139, posNoise = 3, negNoise = 2
17-03-18 06:41:57.434 -07 000000610 INF: Z Motor: After move to -0.166056, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:41:57.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:41:57.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:41:57.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:41:57.434 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:41:57.434 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:41:57.434 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:41:57.434 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:41:57.434 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:41:57.434 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:41:57.434 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:41:57.434 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:41:57.434 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:41:57.434 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:41:57.444 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:41:57.444 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:41:57.444 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:41:57.444 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:41:57.454 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:41:57.454 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:41:57.454 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:41:57.454 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:41:57.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 36452 150\n [Camera]
17-03-18 06:41:57.664 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:41:58.124 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:41:58.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:41:58.124 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:58.124 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:58.124 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 06:41:58.124 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:41:58.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:41:58.124 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:58.124 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:58.124 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:41:58.314 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36452 849
17-03-18 06:41:58.464 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:41:58.524 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:41:58.524 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:41:58.524 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:58.524 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:58.524 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:41:58.524 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:41:58.524 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:41:58.524 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:58.534 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:58.534 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:41:58.684 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:41:58.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:41:58.694 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:41:58.694 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:41:58.694 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:41:58.694 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:41:58.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:41:58.694 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:41:58.694 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:41:58.694 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:41:58.884 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:41:58.884 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:41:58.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 36452 150' command took 2 ms to send, 1411 ms to get response, and 1421 ms overall
17-03-18 06:41:58.884 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:41:58.884 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166063742460473. ------
17-03-18 06:41:58.884 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:41:58.884 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17200 mm
17-03-18 06:41:58.884 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:41:58.884 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:41:58.884 -07 000000474 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 06:41:58.894 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:59.094 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:41:59.094 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:41:59.094 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:59.094 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:41:59.094 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:41:59.094 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:41:59.104 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:41:59.104 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:41:59.224 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-18 06:41:59.234 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 537 ms.
17-03-18 06:41:59.254 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:41:59.254 -07 000000581 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:41:59.254 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 361 ms to get response, and 364 ms overall
17-03-18 06:41:59.254 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 351 ms to get response, and 361 ms overall
17-03-18 06:41:59.254 -07 000000474 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:59.254 -07 000000474 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:41:59.254 -07 000000474 INF: Y Motor: Moving 1356 steps-35
17-03-18 06:41:59.254 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37574, sync = True, waitForSettling = False)
17-03-18 06:41:59.254 -07 000000424 INF: Z Motor: Moving to -0.172003 mm, started at -0.166064 mm, distance = -5.94 um
17-03-18 06:41:59.254 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:41:59.264 -07 000000424 INF: FPGA: Xmit ZDACW 37574\n [Z Motor]
17-03-18 06:41:59.264 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:41:59.274 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:41:59.274 -07 000000424 INF: FPGA: 'ZDACW 37574' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:41:59.284 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:41:59.284 -07 000000581 INF: FPGA: Recv ZDACR 37574
17-03-18 06:41:59.294 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:41:59.294 -07 000000424 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 06:41:59.454 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:41:59.454 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 06:41:59.644 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 06:41:59.644 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 06:41:59.694 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:41:59.694 -07 000000581 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:41:59.704 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:41:59.704 -07 000000474 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:41:59.704 -07 000000474 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:41:59.704 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.847 mm, average velocity = 2.140 mm/sec
17-03-18 06:42:00.654 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:00.654 -07 000000581 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:42:00.664 -07 000000474 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:00.664 -07 000000474 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:00.684 -07 000000474 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:00.684 -07 000000474 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:42:00.684 -07 000000474 INF: Y Motor: Moved to 74.0073 after 1795 ms (table move)
17-03-18 06:42:00.684 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172003 mm (DAC = 37574)
17-03-18 06:42:00.684 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:00.694 -07 000000467 INF: FPGA: Recv ZSGSRD 36069
17-03-18 06:42:00.704 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:00.704 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:00.704 -07 000000474 INF: FPGA: Recv ZSGSRD 36063
17-03-18 06:42:00.714 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:00.714 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:00.714 -07 000000581 INF: FPGA: Recv ZSGSRD 36063
17-03-18 06:42:00.724 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:00.724 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:00.724 -07 000000474 INF: FPGA: Recv ZSGSRD 36061
17-03-18 06:42:00.734 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:00.734 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:00.734 -07 000000581 INF: FPGA: Recv ZSGSRD 36058
17-03-18 06:42:00.744 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:00.744 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:00.744 -07 000000474 INF: FPGA: Recv ZSGSRD 36062
17-03-18 06:42:00.754 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:00.754 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:00.754 -07 000000430 INF: FPGA: Recv ZSGSRD 36066
17-03-18 06:42:00.764 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:00.764 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:00.764 -07 000000444 INF: FPGA: Recv ZSGSRD 36072
17-03-18 06:42:00.774 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:00.774 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:00.774 -07 000000430 INF: FPGA: Recv ZSGSRD 36068
17-03-18 06:42:00.784 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:00.784 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:00.784 -07 000000474 INF: FPGA: Recv ZSGSRD 36061
17-03-18 06:42:00.794 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:00.794 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:00.794 -07 000000430 INF: FPGA: Recv ZPIEZORD 32102
17-03-18 06:42:00.804 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:00.804 -07 000000576 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -8.8 V.
17-03-18 06:42:00.804 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36064 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36063 (-171.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36058 (-171.1 uncal um), Max = 36072 (-171.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:42:00.804 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36064, posNoise = 8, negNoise = 6
17-03-18 06:42:00.804 -07 000000576 INF: Z Motor: After move to -0.172003, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:00.804 -07 000000576 INF: Z Motor: Settle wait time = 1437 ms, measure time = 111 ms (allowed 150 ms), total time = 1548 ms
17-03-18 06:42:00.804 -07 000000576 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:42:00.844 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1953 ms
17-03-18 06:42:00.844 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:00.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:00.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:00.844 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:00.844 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:00.844 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:00.844 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:00.844 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:42:00.844 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:00.854 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:00.854 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:00.854 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:42:00.854 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:42:00.864 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:00.904 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:42:01.204 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:42:01.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:42:01.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:01.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:42:01.244 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:42:01.244 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:01.244 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall
17-03-18 06:42:01.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:42:01.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:01.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:42:01.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:42:01.344 -07 000000467 INF: Autofocus start
17-03-18 06:42:01.344 -07 000000467 INF: MeasureProfile start
17-03-18 06:42:01.344 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:01.344 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:01.354 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:42:01.354 -07 000000585 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:01.354 -07 000000467 INF: MeasureProfile done
17-03-18 06:42:01.354 -07 000000467 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:42:01.354 -07 000000467 INF: Autofocus finished
17-03-18 06:42:01.554 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:42:01.554 -07 000000585 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:42:01.564 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.172006138691602. ----------
17-03-18 06:42:01.564 -07 000000610 INF: Cycle	152	Tile	18	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:42:01.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36107, sync = True, waitForSettling = True)
17-03-18 06:42:01.564 -07 000000610 INF: Z Motor: Moving to -0.165287 mm, started at -0.172006 mm, distance = 6.72 um
17-03-18 06:42:01.564 -07 000000610 INF: FPGA: Xmit ZDACW 36107\n [Z Motor]
17-03-18 06:42:01.564 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:42:01.574 -07 000000610 INF: FPGA: 'ZDACW 36107' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:42:01.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:01.574 -07 000000424 INF: FPGA: Recv ZDACR 36107
17-03-18 06:42:01.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:01.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:42:01.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:01.734 -07 000000581 INF: FPGA: Recv ZSGSRD 35021
17-03-18 06:42:01.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:01.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:01.744 -07 000000576 INF: FPGA: Recv ZSGSRD 35019
17-03-18 06:42:01.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:01.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:01.764 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.973092,
17-03-18 06:42:01.764 -07 000000474 INF: FPGA: Recv ZSGSRD 35018
17-03-18 06:42:01.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:42:01.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:01.794 -07 000000467 INF: FPGA: Recv ZSGSRD 35017
17-03-18 06:42:01.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:42:01.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:01.814 -07 000000576 INF: FPGA: Recv ZSGSRD 35022
17-03-18 06:42:01.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:42:01.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:01.834 -07 000000424 INF: FPGA: Recv ZSGSRD 35017
17-03-18 06:42:01.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:42:01.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:01.844 -07 000000444 INF: FPGA: Recv ZSGSRD 35018
17-03-18 06:42:01.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:01.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:01.854 -07 000000467 INF: FPGA: Recv ZSGSRD 35025
17-03-18 06:42:01.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:01.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:01.864 -07 000000585 INF: FPGA: Recv ZSGSRD 35018
17-03-18 06:42:01.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:01.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:01.874 -07 000000012 INF: FPGA: Recv ZSGSRD 35025
17-03-18 06:42:01.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:01.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:01.884 -07 000000474 INF: FPGA: Recv ZPIEZORD 30648
17-03-18 06:42:01.884 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:42:01.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:42:01.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:01.894 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.510 V. Piezo Error = -9.6 V.
17-03-18 06:42:01.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35020 (-164.4 uncal um), Error = 0.9 uncal um, Median = 35018 (-164.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35017 (-164.4 uncal um), Max = 35025 (-164.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:42:01.894 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35020, posNoise = 5, negNoise = 3
17-03-18 06:42:01.894 -07 000000610 INF: Z Motor: After move to -0.165287, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:01.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 325 ms)
17-03-18 06:42:01.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:01.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:01.894 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:01.894 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:01.894 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:42:01.894 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:01.894 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:42:01.894 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:42:01.894 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:42:01.894 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:42:01.894 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:42:01.894 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:42:01.904 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:42:01.904 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:42:01.904 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:42:01.904 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:42:01.914 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:42:01.914 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:42:01.914 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:42:01.914 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:42:01.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 36284 150\n [Camera]
17-03-18 06:42:02.114 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:42:02.574 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:42:02.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:42:02.574 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:42:02.574 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:02.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:42:02.584 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:02.584 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:02.584 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 06:42:02.584 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:02.584 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) start.
17-03-18 06:42:02.764 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36284 849
17-03-18 06:42:02.914 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:42:02.984 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:42:02.984 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:42:02.984 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:02.984 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:42:02.984 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:42:02.984 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:02.984 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:02.984 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:42:02.984 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:02.994 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:42:03.144 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:42:03.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:42:03.144 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:03.144 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:42:03.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:42:03.144 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:03.144 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:03.144 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:42:03.264 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:03.264 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:42:03.334 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:42:03.334 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:42:03.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 36284 150' command took 2 ms to send, 1414 ms to get response, and 1422 ms overall
17-03-18 06:42:03.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:42:03.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.165299261215604. ------
17-03-18 06:42:03.334 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:03.334 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17161 mm
17-03-18 06:42:03.334 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:42:03.344 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:42:03.344 -07 000000474 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 06:42:03.344 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:03.534 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:42:03.534 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:42:03.534 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:03.544 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:03.544 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:42:03.554 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37489, sync = True, waitForSettling = False)
17-03-18 06:42:03.554 -07 000000444 INF: Z Motor: Moving to -0.171614 mm, started at -0.165299 mm, distance = -6.31 um
17-03-18 06:42:03.554 -07 000000444 INF: FPGA: Xmit ZDACW 37489\n [Z Motor]
17-03-18 06:42:03.654 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:42:03.664 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:42:03.664 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:03.664 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:42:03.664 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 06:42:03.674 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:03.674 -07 000000576 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:42:03.674 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:42:03.674 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 333 ms to get response, and 333 ms overall
17-03-18 06:42:03.674 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 323 ms to get response, and 330 ms overall
17-03-18 06:42:03.674 -07 000000474 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:03.674 -07 000000474 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:42:03.674 -07 000000474 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:42:03.674 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:42:03.674 -07 000000444 INF: FPGA: 'ZDACW 37489' command took 0 ms to send, 113 ms to get response, and 115 ms overall
17-03-18 06:42:03.684 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:03.684 -07 000000576 INF: FPGA: Recv ZDACR 37489
17-03-18 06:42:03.694 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:42:03.694 -07 000000444 INF: Z Motor: MoveAbsStepped took 132 ms (did NOT wait for settling yet))
17-03-18 06:42:03.694 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:42:03.874 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:42:03.874 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-18 06:42:04.064 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 06:42:04.064 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 06:42:04.104 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:04.104 -07 000000581 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:42:04.114 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:04.114 -07 000000474 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:04.114 -07 000000474 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 06:42:04.114 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 06:42:05.064 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:05.064 -07 000000576 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:42:05.074 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:05.074 -07 000000474 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:05.094 -07 000000474 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:05.094 -07 000000474 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:42:05.094 -07 000000474 INF: Y Motor: Moved to 74.8311 after 1748 ms (table move)
17-03-18 06:42:05.094 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171614 mm (DAC = 37489)
17-03-18 06:42:05.094 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:05.094 -07 000000576 INF: FPGA: Recv ZSGSRD 36008
17-03-18 06:42:05.104 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:42:05.104 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:05.104 -07 000000444 INF: FPGA: Recv ZSGSRD 36000
17-03-18 06:42:05.114 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:05.114 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:05.114 -07 000000576 INF: FPGA: Recv ZSGSRD 36007
17-03-18 06:42:05.124 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:05.124 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:05.124 -07 000000474 INF: FPGA: Recv ZSGSRD 36005
17-03-18 06:42:05.134 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:05.134 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:05.134 -07 000000581 INF: FPGA: Recv ZSGSRD 36004
17-03-18 06:42:05.144 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:05.144 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:05.144 -07 000000444 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:42:05.154 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:05.154 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:05.154 -07 000000474 INF: FPGA: Recv ZSGSRD 36006
17-03-18 06:42:05.164 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:42:05.164 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:05.164 -07 000000581 INF: FPGA: Recv ZSGSRD 35996
17-03-18 06:42:05.174 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:05.174 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:05.174 -07 000000474 INF: FPGA: Recv ZSGSRD 36006
17-03-18 06:42:05.184 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:05.184 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:05.184 -07 000000581 INF: FPGA: Recv ZSGSRD 36003
17-03-18 06:42:05.194 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:05.194 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:05.194 -07 000000576 INF: FPGA: Recv ZPIEZORD 32030
17-03-18 06:42:05.204 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:05.204 -07 000000430 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -8.8 V.
17-03-18 06:42:05.204 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36004 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36004 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35996 (-170.7 uncal um), Max = 36008 (-170.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:42:05.204 -07 000000430 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36004, posNoise = 4, negNoise = 8
17-03-18 06:42:05.204 -07 000000430 INF: Z Motor: After move to -0.171614, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:05.204 -07 000000430 INF: Z Motor: Settle wait time = 1536 ms, measure time = 107 ms (allowed 150 ms), total time = 1643 ms
17-03-18 06:42:05.204 -07 000000430 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:42:05.254 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1910 ms
17-03-18 06:42:05.254 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:05.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:05.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:05.254 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:05.254 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:05.254 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:05.254 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:05.254 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:42:05.254 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:05.254 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:05.264 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:05.264 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:42:05.264 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:42:05.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:05.314 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 06:42:05.614 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 06:42:05.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 06:42:05.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:05.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-18 06:42:05.654 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:42:05.654 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:05.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:42:05.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:42:05.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:05.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:42:05.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 06:42:05.754 -07 000000576 INF: Autofocus start
17-03-18 06:42:05.754 -07 000000576 INF: MeasureProfile start
17-03-18 06:42:05.754 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:05.754 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:05.764 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:05.764 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:05.764 -07 000000576 INF: MeasureProfile done
17-03-18 06:42:05.764 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:42:05.764 -07 000000576 INF: Autofocus finished
17-03-18 06:42:05.964 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:42:05.964 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:42:05.964 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171620685963096. ----------
17-03-18 06:42:05.964 -07 000000610 INF: Cycle	152	Tile	19	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:42:05.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35986, sync = True, waitForSettling = True)
17-03-18 06:42:05.974 -07 000000610 INF: Z Motor: Moving to -0.164733 mm, started at -0.171621 mm, distance = 6.89 um
17-03-18 06:42:05.974 -07 000000610 INF: FPGA: Xmit ZDACW 35986\n [Z Motor]
17-03-18 06:42:05.974 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:42:05.984 -07 000000610 INF: FPGA: 'ZDACW 35986' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:05.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:05.984 -07 000000581 INF: FPGA: Recv ZDACR 35986
17-03-18 06:42:05.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:05.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:42:06.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:06.144 -07 000000430 INF: FPGA: Recv ZSGSRD 34933
17-03-18 06:42:06.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:06.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:06.154 -07 000000474 INF: FPGA: Recv ZSGSRD 34936
17-03-18 06:42:06.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:06.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:06.164 -07 000000629 INF: FPGA: Recv ZSGSRD 34931
17-03-18 06:42:06.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:06.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:06.174 -07 000000581 INF: FPGA: Recv ZSGSRD 34929
17-03-18 06:42:06.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:06.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:06.184 -07 000000576 INF: FPGA: Recv ZSGSRD 34935
17-03-18 06:42:06.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:06.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:06.194 -07 000000474 INF: FPGA: Recv ZSGSRD 34933
17-03-18 06:42:06.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:06.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:06.204 -07 000000629 INF: FPGA: Recv ZSGSRD 34933
17-03-18 06:42:06.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:06.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:06.214 -07 000000444 INF: FPGA: Recv ZSGSRD 34932
17-03-18 06:42:06.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:06.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:06.224 -07 000000430 INF: FPGA: Recv ZSGSRD 34938
17-03-18 06:42:06.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:06.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:06.234 -07 000000474 INF: FPGA: Recv ZSGSRD 34934
17-03-18 06:42:06.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:06.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:06.244 -07 000000461 INF: FPGA: Recv ZPIEZORD 30581
17-03-18 06:42:06.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:06.254 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.491 V. Piezo Error = -9.6 V.
17-03-18 06:42:06.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34933 (-163.9 uncal um), Error = 0.9 uncal um, Median = 34933 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34929 (-163.9 uncal um), Max = 34938 (-163.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:42:06.254 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34933, posNoise = 5, negNoise = 4
17-03-18 06:42:06.254 -07 000000610 INF: Z Motor: After move to -0.164733, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:06.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:42:06.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:06.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:06.254 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:06.254 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:42:06.254 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:42:06.254 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:06.254 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:06.254 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:42:06.254 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:42:06.254 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:42:06.254 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:42:06.264 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:42:06.264 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:42:06.264 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:42:06.264 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:42:06.264 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:42:06.274 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:42:06.274 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:42:06.274 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:42:06.274 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:42:06.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 36163 150\n [Camera]
17-03-18 06:42:06.474 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:42:06.884 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:42:06.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:42:06.934 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:42:06.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:42:06.934 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:06.934 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:06.934 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2619884792, 0x0, 391868352) start.
17-03-18 06:42:06.944 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:42:06.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:42:06.944 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:06.944 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:06.944 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 06:42:07.134 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36163 849
17-03-18 06:42:07.154 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.969015,
17-03-18 06:42:07.274 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:42:07.334 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2619884792, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:42:07.334 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:42:07.334 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:07.344 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:07.344 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:42:07.344 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:42:07.344 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:42:07.344 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:07.344 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:07.354 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:42:07.504 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:42:07.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:42:07.504 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:07.504 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:42:07.504 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:07.504 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 06:42:07.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:42:07.504 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:07.504 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:07.504 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:42:07.694 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:42:07.694 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:42:07.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 36163 150' command took 2 ms to send, 1415 ms to get response, and 1421 ms overall
17-03-18 06:42:07.914 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:42:07.914 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:42:07.914 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:07.914 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 06:42:07.914 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:42:07.914 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:07.914 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:07.914 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:42:07.914 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:42:07.914 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:07.924 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 06:42:07.964 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 06:42:07.964 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:42:08.004 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:42:08.004 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 06:42:08.004 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:42:08.004 -07 000000461 INF: FPGA: Recv EMCUR 
17-03-18 06:42:08.014 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:42:08.014 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 06:42:08.514 -07 000000444 INF: FPGA: Recv EMIN
17-03-18 06:42:08.514 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:42:08.514 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 06:42:08.514 -07 000000444 INF: FPGA: Recv EMCUR 
17-03-18 06:42:08.524 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:08.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:42:08.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.16474035475927. ------
17-03-18 06:42:08.524 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:08.524 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13923 mm
17-03-18 06:42:08.524 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:42:08.524 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:42:08.524 -07 000000430 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 06:42:08.524 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 30414, sync = True, waitForSettling = False)
17-03-18 06:42:08.524 -07 000000444 INF: Z Motor: Moving to -0.139226 mm, started at -0.164740 mm, distance = 25.51 um
17-03-18 06:42:08.534 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:08.534 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:42:08.534 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:08.534 -07 000000576 INF: FPGA: Recv YRDPOS 153256
17-03-18 06:42:08.544 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:08.544 -07 000000430 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:08.544 -07 000000444 INF: FPGA: Xmit ZDACW 30414\n [Z Motor]
17-03-18 06:42:08.544 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:42:08.554 -07 000000444 INF: FPGA: 'ZDACW 30414' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:42:08.554 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:42:08.554 -07 000000430 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 06:42:08.554 -07 000000430 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:42:08.564 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:08.564 -07 000000576 INF: FPGA: Recv ZDACR 30414
17-03-18 06:42:08.574 -07 000000430 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:42:08.574 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:42:08.574 -07 000000444 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:42:08.754 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:42:08.754 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 06:42:10.194 -07 000000461 INF: FPGA: Recv YMVTO 122702 23904
17-03-18 06:42:10.194 -07 000000430 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1647 ms overall
17-03-18 06:42:10.194 -07 000000430 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 06:42:10.194 -07 000000430 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 06:42:10.194 -07 000000430 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1647 ms, distance = 14.918 mm, average velocity = 9.058 mm/sec
17-03-18 06:42:11.884 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:42:11.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:42:12.514 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.98264,
17-03-18 06:42:13.044 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:13.044 -07 000000444 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:42:13.054 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:13.054 -07 000000430 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:13.094 -07 000000430 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:13.094 -07 000000430 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 06:42:13.094 -07 000000430 INF: Y Motor: Moved to 59.9102 after 4563 ms
17-03-18 06:42:13.094 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139226 mm (DAC = 30414)
17-03-18 06:42:13.094 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:13.094 -07 000000382 INF: FPGA: Recv ZSGSRD 30965
17-03-18 06:42:13.104 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:42:13.104 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:13.104 -07 000000502 INF: FPGA: Recv ZSGSRD 30966
17-03-18 06:42:13.114 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:13.114 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:13.114 -07 000000461 INF: FPGA: Recv ZSGSRD 30963
17-03-18 06:42:13.124 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:13.124 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:13.124 -07 000000430 INF: FPGA: Recv ZSGSRD 30962
17-03-18 06:42:13.134 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:13.134 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:13.134 -07 000000461 INF: FPGA: Recv ZSGSRD 30966
17-03-18 06:42:13.144 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:13.144 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:13.144 -07 000000430 INF: FPGA: Recv ZSGSRD 30957
17-03-18 06:42:13.154 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:13.154 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:13.154 -07 000000382 INF: FPGA: Recv ZSGSRD 30967
17-03-18 06:42:13.164 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:13.164 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:13.164 -07 000000430 INF: FPGA: Recv ZSGSRD 30969
17-03-18 06:42:13.174 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:13.174 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:13.174 -07 000000461 INF: FPGA: Recv ZSGSRD 30963
17-03-18 06:42:13.184 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:13.184 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:13.184 -07 000000444 INF: FPGA: Recv ZSGSRD 30965
17-03-18 06:42:13.194 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:13.194 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:13.194 -07 000000444 INF: FPGA: Recv ZPIEZORD 26400
17-03-18 06:42:13.204 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:13.204 -07 000000581 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.641 V. Piezo Error = -10.0 V.
17-03-18 06:42:13.204 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30964 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30965 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30957 (-138.4 uncal um), Max = 30969 (-138.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:42:13.204 -07 000000581 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30964, posNoise = 5, negNoise = 7
17-03-18 06:42:13.204 -07 000000581 INF: Z Motor: After move to -0.139226, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:13.204 -07 000000581 INF: Z Motor: Settle wait time = 4566 ms, measure time = 104 ms (allowed 150 ms), total time = 4670 ms
17-03-18 06:42:13.204 -07 000000581 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:42:13.254 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms
17-03-18 06:42:13.254 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:13.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:13.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:13.254 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:13.254 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:13.254 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:13.254 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:13.254 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:13.254 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:42:13.284 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 06:42:13.284 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:13.284 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:42:13.284 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:13.294 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:42:13.294 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 06:42:13.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:13.344 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:42:13.644 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:42:13.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:42:13.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:13.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:42:13.684 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:42:13.684 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:13.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 06:42:13.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:42:13.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:13.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:42:13.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:42:13.784 -07 000000611 INF: Image SNR check: start
17-03-18 06:42:13.784 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:13.784 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:13.794 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:13.794 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:13.794 -07 000000611 INF: Image SNR check: pass  [peak (Max-Min)=113.41]
17-03-18 06:42:13.794 -07 000000611 INF: Autofocus start
17-03-18 06:42:13.794 -07 000000611 INF: MeasureProfile start
17-03-18 06:42:13.814 -07 000000611 INF: MeasureProfile done
17-03-18 06:42:13.814 -07 000000611 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:42:13.814 -07 000000611 INF: Autofocus finished
17-03-18 06:42:13.994 -07 000000581 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:42:13.994 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:42:13.994 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139242656768621. ----------
17-03-18 06:42:13.994 -07 000000610 INF: Cycle	152	Tile	1	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:42:14.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28922, sync = True, waitForSettling = True)
17-03-18 06:42:14.004 -07 000000610 INF: Z Motor: Moving to -0.132396 mm, started at -0.139243 mm, distance = 6.85 um
17-03-18 06:42:14.004 -07 000000610 INF: FPGA: Xmit ZDACW 28922\n [Z Motor]
17-03-18 06:42:14.004 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:42:14.014 -07 000000610 INF: FPGA: 'ZDACW 28922' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:14.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:14.014 -07 000000382 INF: FPGA: Recv ZDACR 28922
17-03-18 06:42:14.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:14.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:42:14.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:14.174 -07 000000611 INF: FPGA: Recv ZSGSRD 29897
17-03-18 06:42:14.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:14.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:14.184 -07 000000430 INF: FPGA: Recv ZSGSRD 29903
17-03-18 06:42:14.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:14.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:14.194 -07 000000444 INF: FPGA: Recv ZSGSRD 29892
17-03-18 06:42:14.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:42:14.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:14.204 -07 000000502 INF: FPGA: Recv ZSGSRD 29889
17-03-18 06:42:14.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:14.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:14.214 -07 000000581 INF: FPGA: Recv ZSGSRD 29907
17-03-18 06:42:14.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:14.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:14.224 -07 000000461 INF: FPGA: Recv ZSGSRD 29897
17-03-18 06:42:14.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:14.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:14.234 -07 000000611 INF: FPGA: Recv ZSGSRD 29894
17-03-18 06:42:14.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:14.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:14.244 -07 000000461 INF: FPGA: Recv ZSGSRD 29899
17-03-18 06:42:14.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:14.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:14.254 -07 000000444 INF: FPGA: Recv ZSGSRD 29896
17-03-18 06:42:14.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:14.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:14.264 -07 000000576 INF: FPGA: Recv ZSGSRD 29901
17-03-18 06:42:14.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:14.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:14.274 -07 000000581 INF: FPGA: Recv ZPIEZORD 25263
17-03-18 06:42:14.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:14.284 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -10.2 V.
17-03-18 06:42:14.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29898 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29897 (-131.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29889 (-131.6 uncal um), Max = 29907 (-131.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:42:14.284 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29898, posNoise = 9, negNoise = 9
17-03-18 06:42:14.284 -07 000000610 INF: Z Motor: After move to -0.132396, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:14.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:42:14.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:14.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:14.284 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:14.284 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:14.284 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:42:14.284 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:42:14.284 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:42:14.284 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:14.284 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:42:14.284 -07 000000581 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:42:14.284 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:14.284 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:42:14.294 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:14.294 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:42:14.294 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:42:14.294 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:42:14.304 -07 000000581 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 06:42:14.304 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:42:14.314 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:42:14.314 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:42:14.314 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:42:14.314 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 06:42:14.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 29098 150\n [Camera]
17-03-18 06:42:14.524 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 06:42:14.984 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:42:14.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:42:14.984 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:14.984 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:14.984 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:42:14.984 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:42:14.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:42:14.984 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:14.984 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:14.984 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:42:15.174 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29098 849
17-03-18 06:42:15.324 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:42:15.364 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:42:15.364 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:42:15.364 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:15.364 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:42:15.364 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:42:15.364 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:15.374 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:15.374 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:42:15.374 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:15.374 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:42:15.554 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1224
17-03-18 06:42:15.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1224
17-03-18 06:42:15.554 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:15.554 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:15.554 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:42:15.554 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1224
17-03-18 06:42:15.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1224
17-03-18 06:42:15.554 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:15.554 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:15.554 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:42:15.744 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:42:15.744 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:42:15.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 29098 150' command took 2 ms to send, 1414 ms to get response, and 1423 ms overall
17-03-18 06:42:15.744 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:42:15.744 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.132394446625504. ------
17-03-18 06:42:15.744 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:15.744 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13874 mm
17-03-18 06:42:15.744 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:42:15.754 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:42:15.754 -07 000000012 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 06:42:15.754 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:15.754 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:42:15.754 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:15.754 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 30308, sync = True, waitForSettling = False)
17-03-18 06:42:15.754 -07 000000487 INF: Z Motor: Moving to -0.138741 mm, started at -0.132394 mm, distance = -6.35 um
17-03-18 06:42:15.754 -07 000000444 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:42:15.764 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:42:15.764 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:42:15.764 -07 000000012 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:15.764 -07 000000012 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:42:15.764 -07 000000012 INF: Y Motor: Moving 1332 steps1
17-03-18 06:42:15.774 -07 000000487 INF: FPGA: Xmit ZDACW 30308\n [Z Motor]
17-03-18 06:42:15.774 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:42:15.784 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:42:15.784 -07 000000487 INF: FPGA: 'ZDACW 30308' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:42:15.794 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:15.794 -07 000000467 INF: FPGA: Recv ZDACR 30308
17-03-18 06:42:15.804 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:42:15.804 -07 000000487 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 06:42:15.934 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:42:15.934 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:42:15.934 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:15.934 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 06:42:15.944 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:42:15.944 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:15.944 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:15.944 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:42:15.944 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:42:15.954 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:42:15.964 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:42:15.964 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-18 06:42:16.154 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:42:16.154 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:42:16.204 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:16.204 -07 000000430 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:42:16.214 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:42:16.214 -07 000000012 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:16.214 -07 000000012 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:42:16.214 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.832 mm, average velocity = 2.107 mm/sec
17-03-18 06:42:16.884 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:42:16.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:42:17.164 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:17.164 -07 000000461 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:42:17.174 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:17.174 -07 000000012 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:17.204 -07 000000012 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:17.204 -07 000000012 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:42:17.204 -07 000000012 INF: Y Motor: Moved to 60.7324 after 1454 ms (table move)
17-03-18 06:42:17.204 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138741 mm (DAC = 30308)
17-03-18 06:42:17.204 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:17.214 -07 000000430 INF: FPGA: Recv ZSGSRD 30890
17-03-18 06:42:17.224 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:17.224 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:17.224 -07 000000012 INF: FPGA: Recv ZSGSRD 30889
17-03-18 06:42:17.234 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:17.234 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:17.234 -07 000000611 INF: FPGA: Recv ZSGSRD 30883
17-03-18 06:42:17.244 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:17.244 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:17.244 -07 000000430 INF: FPGA: Recv ZSGSRD 30882
17-03-18 06:42:17.254 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:17.254 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:17.254 -07 000000461 INF: FPGA: Recv ZSGSRD 30882
17-03-18 06:42:17.264 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:17.264 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:17.264 -07 000000461 INF: FPGA: Recv ZSGSRD 30887
17-03-18 06:42:17.274 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:17.274 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:17.274 -07 000000611 INF: FPGA: Recv ZSGSRD 30893
17-03-18 06:42:17.284 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:17.284 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:17.284 -07 000000461 INF: FPGA: Recv ZSGSRD 30889
17-03-18 06:42:17.294 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:17.294 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:17.294 -07 000000611 INF: FPGA: Recv ZSGSRD 30890
17-03-18 06:42:17.304 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:17.304 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:17.304 -07 000000430 INF: FPGA: Recv ZSGSRD 30886
17-03-18 06:42:17.314 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:17.334 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:17.334 -07 000000461 INF: FPGA: Recv ZPIEZORD 26610
17-03-18 06:42:17.344 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:42:17.344 -07 000000424 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.625 V. Piezo Error = -9.4 V.
17-03-18 06:42:17.344 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30887 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30888 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30882 (-137.9 uncal um), Max = 30893 (-138.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:42:17.344 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30887, posNoise = 6, negNoise = 5
17-03-18 06:42:17.344 -07 000000424 INF: Z Motor: After move to -0.138741, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:17.344 -07 000000424 INF: Z Motor: Settle wait time = 1456 ms, measure time = 131 ms (allowed 150 ms), total time = 1587 ms
17-03-18 06:42:17.344 -07 000000424 INF: Z Motor: Waiting extra 19 ms after reading position to reach expected total of 150 ms
17-03-18 06:42:17.364 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 06:42:17.364 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:17.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:17.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:17.364 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:17.364 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:17.364 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:17.364 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:17.364 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:17.364 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:17.364 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:17.364 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:17.384 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:42:17.384 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:42:17.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:17.434 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:42:17.734 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:42:17.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:42:17.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:17.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2607377792, 0x0, 559484976) start.
17-03-18 06:42:17.764 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:42:17.774 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:17.774 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 06:42:17.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2607377792, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 06:42:17.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:17.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:42:17.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:42:17.874 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.999021,
17-03-18 06:42:17.874 -07 000000462 INF: Autofocus start
17-03-18 06:42:17.874 -07 000000462 INF: MeasureProfile start
17-03-18 06:42:17.884 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:17.884 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:17.894 -07 000000462 INF: MeasureProfile done
17-03-18 06:42:17.894 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:42:17.894 -07 000000462 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:42:17.894 -07 000000462 INF: Autofocus finished
17-03-18 06:42:17.894 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:18.094 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:42:18.094 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:42:18.094 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138747992433706. ----------
17-03-18 06:42:18.094 -07 000000610 INF: Cycle	152	Tile	2	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:42:18.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28849, sync = True, waitForSettling = True)
17-03-18 06:42:18.104 -07 000000610 INF: Z Motor: Moving to -0.132062 mm, started at -0.138748 mm, distance = 6.69 um
17-03-18 06:42:18.104 -07 000000610 INF: FPGA: Xmit ZDACW 28849\n [Z Motor]
17-03-18 06:42:18.104 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:42:18.114 -07 000000610 INF: FPGA: 'ZDACW 28849' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:42:18.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:18.114 -07 000000461 INF: FPGA: Recv ZDACR 28849
17-03-18 06:42:18.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:18.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:42:18.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:18.274 -07 000000424 INF: FPGA: Recv ZSGSRD 29847
17-03-18 06:42:18.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:18.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:18.284 -07 000000611 INF: FPGA: Recv ZSGSRD 29841
17-03-18 06:42:18.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:18.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:18.294 -07 000000430 INF: FPGA: Recv ZSGSRD 29856
17-03-18 06:42:18.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:18.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:18.304 -07 000000012 INF: FPGA: Recv ZSGSRD 29842
17-03-18 06:42:18.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:18.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:18.314 -07 000000462 INF: FPGA: Recv ZSGSRD 29846
17-03-18 06:42:18.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:18.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:18.324 -07 000000012 INF: FPGA: Recv ZSGSRD 29845
17-03-18 06:42:18.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:18.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:18.334 -07 000000430 INF: FPGA: Recv ZSGSRD 29851
17-03-18 06:42:18.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:18.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:18.344 -07 000000012 INF: FPGA: Recv ZSGSRD 29842
17-03-18 06:42:18.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:18.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:18.354 -07 000000462 INF: FPGA: Recv ZSGSRD 29845
17-03-18 06:42:18.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:18.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:18.364 -07 000000629 INF: FPGA: Recv ZSGSRD 29844
17-03-18 06:42:18.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:18.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:18.374 -07 000000424 INF: FPGA: Recv ZPIEZORD 25268
17-03-18 06:42:18.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:18.384 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -10.0 V.
17-03-18 06:42:18.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29846 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29845 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29841 (-131.2 uncal um), Max = 29856 (-131.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:42:18.384 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29846, posNoise = 10, negNoise = 5
17-03-18 06:42:18.384 -07 000000610 INF: Z Motor: After move to -0.132062, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:18.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:42:18.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:18.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:18.384 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:18.384 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:18.384 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:42:18.384 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:18.384 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:42:18.384 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:42:18.384 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:18.384 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:42:18.384 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:42:18.384 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:42:18.394 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:42:18.394 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:42:18.394 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:42:18.394 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:42:18.404 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:42:18.404 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:42:18.404 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:42:18.404 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:42:18.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 29026 150\n [Camera]
17-03-18 06:42:18.604 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:42:19.074 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:42:19.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:42:19.074 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:19.074 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:19.074 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:42:19.074 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:42:19.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:42:19.074 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:19.074 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:19.074 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:42:19.264 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29026 849
17-03-18 06:42:19.414 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:42:19.464 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 06:42:19.464 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:42:19.464 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:19.464 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:19.474 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:42:19.474 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:42:19.474 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:19.474 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:19.474 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:42:19.474 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:42:19.634 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:42:19.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:42:19.644 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:42:19.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:42:19.644 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:19.644 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:19.644 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 06:42:19.644 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:19.644 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:19.644 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 06:42:19.834 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:42:19.834 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:42:19.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 29026 150' command took 2 ms to send, 1411 ms to get response, and 1422 ms overall
17-03-18 06:42:19.834 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:42:19.834 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132060387594133. ------
17-03-18 06:42:19.834 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:19.834 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13898 mm
17-03-18 06:42:19.834 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:42:19.834 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:42:19.834 -07 000000474 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 06:42:19.834 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:19.834 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30359, sync = True, waitForSettling = False)
17-03-18 06:42:19.834 -07 000000629 INF: Z Motor: Moving to -0.138975 mm, started at -0.132060 mm, distance = -6.91 um
17-03-18 06:42:19.844 -07 000000629 INF: FPGA: Xmit ZDACW 30359\n [Z Motor]
17-03-18 06:42:19.844 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:42:19.844 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:42:19.854 -07 000000629 INF: FPGA: 'ZDACW 30359' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:19.854 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:19.854 -07 000000502 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:42:19.864 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:42:19.864 -07 000000474 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:19.864 -07 000000474 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:42:19.864 -07 000000474 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:42:19.864 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:42:19.874 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:19.874 -07 000000462 INF: FPGA: Recv ZDACR 30359
17-03-18 06:42:19.884 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:42:19.884 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:42:19.884 -07 000000629 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:42:20.044 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:42:20.044 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:42:20.044 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:42:20.044 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:20.044 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:42:20.044 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:20.054 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:20.054 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:42:20.054 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:42:20.054 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:42:20.064 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:42:20.064 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 06:42:20.254 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-18 06:42:20.254 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 06:42:20.314 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:20.324 -07 000000430 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:42:20.324 -07 000000474 INF: FPGA: 'YRDPOS' command took 6 ms to send, 3 ms to get response, and 13 ms overall
17-03-18 06:42:20.324 -07 000000474 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:20.324 -07 000000474 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:42:20.324 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.127 mm/sec
17-03-18 06:42:21.274 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:21.274 -07 000000611 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:42:21.284 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:21.284 -07 000000474 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:21.314 -07 000000474 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:21.314 -07 000000474 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:42:21.314 -07 000000474 INF: Y Motor: Moved to 61.5630 after 1473 ms (table move)
17-03-18 06:42:21.314 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138975 mm (DAC = 30359)
17-03-18 06:42:21.314 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:21.324 -07 000000430 INF: FPGA: Recv ZSGSRD 30920
17-03-18 06:42:21.324 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:42:21.324 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:21.324 -07 000000462 INF: FPGA: Recv ZSGSRD 30931
17-03-18 06:42:21.334 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:42:21.334 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:21.334 -07 000000462 INF: FPGA: Recv ZSGSRD 30920
17-03-18 06:42:21.344 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:21.344 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:21.344 -07 000000474 INF: FPGA: Recv ZSGSRD 30922
17-03-18 06:42:21.354 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:21.354 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:21.354 -07 000000502 INF: FPGA: Recv ZSGSRD 30919
17-03-18 06:42:21.364 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:21.364 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:21.364 -07 000000502 INF: FPGA: Recv ZSGSRD 30915
17-03-18 06:42:21.374 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:21.374 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:21.374 -07 000000502 INF: FPGA: Recv ZSGSRD 30929
17-03-18 06:42:21.384 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:21.384 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:21.384 -07 000000474 INF: FPGA: Recv ZSGSRD 30926
17-03-18 06:42:21.394 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:21.394 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:21.394 -07 000000502 INF: FPGA: Recv ZSGSRD 30922
17-03-18 06:42:21.404 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:21.404 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:21.404 -07 000000611 INF: FPGA: Recv ZSGSRD 30927
17-03-18 06:42:21.414 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:21.414 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:21.414 -07 000000502 INF: FPGA: Recv ZPIEZORD 26691
17-03-18 06:42:21.424 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:21.424 -07 000000592 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -9.3 V.
17-03-18 06:42:21.424 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30923 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30922 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30915 (-138.1 uncal um), Max = 30931 (-138.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:42:21.424 -07 000000592 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30923, posNoise = 8, negNoise = 8
17-03-18 06:42:21.424 -07 000000592 INF: Z Motor: After move to -0.138975, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:21.424 -07 000000592 INF: Z Motor: Settle wait time = 1477 ms, measure time = 103 ms (allowed 150 ms), total time = 1580 ms
17-03-18 06:42:21.424 -07 000000592 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:42:21.474 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 06:42:21.474 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:21.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:21.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:21.474 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:21.474 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:21.474 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:21.474 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:21.474 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:21.474 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:21.484 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:21.484 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:21.494 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:42:21.494 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:42:21.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:21.534 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:42:21.834 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:42:21.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:42:21.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:21.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 06:42:21.874 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:42:21.874 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:21.874 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:42:21.884 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:42:21.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 06:42:21.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:21.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:42:21.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:42:21.964 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:42:21.974 -07 000000592 INF: Autofocus start
17-03-18 06:42:21.974 -07 000000592 INF: MeasureProfile start
17-03-18 06:42:21.974 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:21.974 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:21.984 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:21.984 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:21.984 -07 000000592 INF: MeasureProfile done
17-03-18 06:42:21.984 -07 000000592 INF: X=-22  Z correction [um]=-0.110495
17-03-18 06:42:21.984 -07 000000592 INF: Autofocus finished
17-03-18 06:42:22.184 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:42:22.184 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:42:22.184 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138979264070809. ----------
17-03-18 06:42:22.184 -07 000000610 INF: Cycle	152	Tile	3	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:42:22.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28848, sync = True, waitForSettling = True)
17-03-18 06:42:22.194 -07 000000610 INF: Z Motor: Moving to -0.132058 mm, started at -0.138979 mm, distance = 6.92 um
17-03-18 06:42:22.194 -07 000000610 INF: FPGA: Xmit ZDACW 28848\n [Z Motor]
17-03-18 06:42:22.194 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:42:22.204 -07 000000610 INF: FPGA: 'ZDACW 28848' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:42:22.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:22.204 -07 000000462 INF: FPGA: Recv ZDACR 28848
17-03-18 06:42:22.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:22.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:42:22.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:22.364 -07 000000474 INF: FPGA: Recv ZSGSRD 29846
17-03-18 06:42:22.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:22.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:22.384 -07 000000462 INF: FPGA: Recv ZSGSRD 29849
17-03-18 06:42:22.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:42:22.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:22.394 -07 000000474 INF: FPGA: Recv ZSGSRD 29840
17-03-18 06:42:22.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:22.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:22.404 -07 000000462 INF: FPGA: Recv ZSGSRD 29847
17-03-18 06:42:22.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:22.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:22.414 -07 000000462 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:42:22.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:22.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:22.424 -07 000000462 INF: FPGA: Recv ZSGSRD 29846
17-03-18 06:42:22.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:22.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:22.434 -07 000000611 INF: FPGA: Recv ZSGSRD 29849
17-03-18 06:42:22.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:22.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:22.444 -07 000000611 INF: FPGA: Recv ZSGSRD 29846
17-03-18 06:42:22.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:22.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:22.454 -07 000000611 INF: FPGA: Recv ZSGSRD 29848
17-03-18 06:42:22.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:22.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:22.464 -07 000000502 INF: FPGA: Recv ZSGSRD 29844
17-03-18 06:42:22.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:22.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:22.474 -07 000000462 INF: FPGA: Recv ZPIEZORD 25333
17-03-18 06:42:22.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:22.484 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.9 V.
17-03-18 06:42:22.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29846 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29846 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29840 (-131.2 uncal um), Max = 29850 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:42:22.484 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29846, posNoise = 4, negNoise = 6
17-03-18 06:42:22.484 -07 000000610 INF: Z Motor: After move to -0.132058, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:22.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 06:42:22.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:22.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:22.484 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:22.484 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:42:22.484 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:22.484 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:22.484 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:42:22.484 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:42:22.484 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:22.484 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:42:22.484 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:42:22.484 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:42:22.494 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:22.494 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:42:22.494 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:42:22.494 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:42:22.504 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:42:22.504 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:42:22.504 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:42:22.504 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:42:22.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 29024 150\n [Camera]
17-03-18 06:42:22.704 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:42:23.164 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:42:23.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:42:23.164 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:23.164 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:23.164 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:42:23.174 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:42:23.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:42:23.174 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:23.174 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:23.174 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:42:23.254 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.993549,
17-03-18 06:42:23.354 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29024 849
17-03-18 06:42:23.504 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:42:23.544 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:42:23.544 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:42:23.544 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:23.544 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:42:23.544 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:42:23.544 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:23.554 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:23.554 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:23.554 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:42:23.554 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:42:23.734 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:42:23.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:42:23.734 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:23.734 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:23.734 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:42:23.734 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:42:23.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:42:23.734 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:23.734 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:23.734 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:42:23.924 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:42:23.924 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:42:23.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 29024 150' command took 2 ms to send, 1415 ms to get response, and 1422 ms overall
17-03-18 06:42:23.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:42:23.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132060387594133. ------
17-03-18 06:42:23.934 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13849 mm
17-03-18 06:42:23.934 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:42:23.934 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:23.934 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 30252, sync = True, waitForSettling = False)
17-03-18 06:42:23.934 -07 000000581 INF: Z Motor: Moving to -0.138485 mm, started at -0.132060 mm, distance = -6.42 um
17-03-18 06:42:23.934 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:42:23.934 -07 000000585 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 06:42:23.934 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:23.944 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:42:23.944 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:23.944 -07 000000592 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:42:23.954 -07 000000581 INF: FPGA: Xmit ZDACW 30252\n [Z Motor]
17-03-18 06:42:23.954 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:42:23.954 -07 000000585 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:23.954 -07 000000585 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:42:23.954 -07 000000585 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:42:23.954 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:42:23.964 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:42:23.964 -07 000000581 INF: FPGA: 'ZDACW 30252' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:42:23.974 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:42:23.984 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:23.984 -07 000000487 INF: FPGA: Recv ZDACR 30252
17-03-18 06:42:23.994 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:42:23.994 -07 000000581 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 06:42:24.134 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:42:24.134 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:42:24.134 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:24.134 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:42:24.134 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:42:24.134 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:24.144 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:24.144 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:42:24.144 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:42:24.144 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:42:24.164 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:42:24.164 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:42:24.344 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 06:42:24.344 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:42:24.404 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:24.404 -07 000000462 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:42:24.414 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:24.414 -07 000000585 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:24.414 -07 000000585 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:42:24.414 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 06:42:25.364 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:25.364 -07 000000576 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:42:25.374 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:25.374 -07 000000585 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:25.404 -07 000000585 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:25.404 -07 000000585 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:42:25.404 -07 000000585 INF: Y Motor: Moved to 62.3945 after 1467 ms (table move)
17-03-18 06:42:25.404 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138485 mm (DAC = 30252)
17-03-18 06:42:25.404 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:25.404 -07 000000462 INF: FPGA: Recv ZSGSRD 30853
17-03-18 06:42:25.414 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:42:25.414 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:25.414 -07 000000592 INF: FPGA: Recv ZSGSRD 30847
17-03-18 06:42:25.424 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:25.424 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:25.424 -07 000000579 INF: FPGA: Recv ZSGSRD 30834
17-03-18 06:42:25.434 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:25.434 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:25.434 -07 000000502 INF: FPGA: Recv ZSGSRD 30840
17-03-18 06:42:25.444 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:25.444 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:25.444 -07 000000585 INF: FPGA: Recv ZSGSRD 30845
17-03-18 06:42:25.454 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:25.454 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:25.454 -07 000000502 INF: FPGA: Recv ZSGSRD 30845
17-03-18 06:42:25.464 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:25.464 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:25.464 -07 000000487 INF: FPGA: Recv ZSGSRD 30852
17-03-18 06:42:25.474 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:25.474 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:25.474 -07 000000502 INF: FPGA: Recv ZSGSRD 30852
17-03-18 06:42:25.484 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:25.484 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:25.484 -07 000000579 INF: FPGA: Recv ZSGSRD 30850
17-03-18 06:42:25.494 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:25.494 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:25.494 -07 000000585 INF: FPGA: Recv ZSGSRD 30846
17-03-18 06:42:25.504 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:25.504 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:25.504 -07 000000576 INF: FPGA: Recv ZPIEZORD 26636
17-03-18 06:42:25.514 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:25.514 -07 000000474 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.616 V. Piezo Error = -9.3 V.
17-03-18 06:42:25.514 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30846 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30846 (-137.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30834 (-137.6 uncal um), Max = 30853 (-137.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 06:42:25.514 -07 000000474 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30846, posNoise = 7, negNoise = 12
17-03-18 06:42:25.514 -07 000000474 INF: Z Motor: After move to -0.138485, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:25.514 -07 000000474 INF: Z Motor: Settle wait time = 1471 ms, measure time = 105 ms (allowed 150 ms), total time = 1576 ms
17-03-18 06:42:25.514 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:42:25.564 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 06:42:25.564 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:25.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:25.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:25.564 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:25.564 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:25.564 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:25.564 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:25.564 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:25.564 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:25.564 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:25.564 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:25.584 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:42:25.584 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:42:25.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:25.634 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:42:25.934 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:42:25.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:42:25.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:25.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-18 06:42:25.964 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:42:25.974 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:25.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:42:26.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 06:42:26.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:26.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:42:26.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 06:42:26.074 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:26.074 -07 000000585 INF: Autofocus start
17-03-18 06:42:26.074 -07 000000585 INF: MeasureProfile start
17-03-18 06:42:26.074 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:26.084 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:26.084 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:26.084 -07 000000585 INF: MeasureProfile done
17-03-18 06:42:26.094 -07 000000585 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:42:26.094 -07 000000585 INF: Autofocus finished
17-03-18 06:42:26.284 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:42:26.284 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 06:42:26.294 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.138484599735893. ----------
17-03-18 06:42:26.294 -07 000000610 INF: Cycle	152	Tile	4	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:42:26.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28747, sync = True, waitForSettling = True)
17-03-18 06:42:26.294 -07 000000610 INF: Z Motor: Moving to -0.131595 mm, started at -0.138485 mm, distance = 6.89 um
17-03-18 06:42:26.294 -07 000000610 INF: FPGA: Xmit ZDACW 28747\n [Z Motor]
17-03-18 06:42:26.294 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:42:26.304 -07 000000610 INF: FPGA: 'ZDACW 28747' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:42:26.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:26.304 -07 000000462 INF: FPGA: Recv ZDACR 28747
17-03-18 06:42:26.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:26.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:42:26.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:26.464 -07 000000462 INF: FPGA: Recv ZSGSRD 29774
17-03-18 06:42:26.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:26.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:26.474 -07 000000576 INF: FPGA: Recv ZSGSRD 29772
17-03-18 06:42:26.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:42:26.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:26.484 -07 000000576 INF: FPGA: Recv ZSGSRD 29769
17-03-18 06:42:26.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:26.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:26.494 -07 000000576 INF: FPGA: Recv ZSGSRD 29772
17-03-18 06:42:26.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:26.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:26.504 -07 000000462 INF: FPGA: Recv ZSGSRD 29776
17-03-18 06:42:26.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:26.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:26.514 -07 000000462 INF: FPGA: Recv ZSGSRD 29775
17-03-18 06:42:26.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:26.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:26.524 -07 000000576 INF: FPGA: Recv ZSGSRD 29775
17-03-18 06:42:26.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:26.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:26.534 -07 000000576 INF: FPGA: Recv ZSGSRD 29771
17-03-18 06:42:26.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:26.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:26.544 -07 000000576 INF: FPGA: Recv ZSGSRD 29774
17-03-18 06:42:26.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:26.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:26.554 -07 000000462 INF: FPGA: Recv ZSGSRD 29775
17-03-18 06:42:26.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:26.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:26.564 -07 000000487 INF: FPGA: Recv ZPIEZORD 25235
17-03-18 06:42:26.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:26.574 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -10.0 V.
17-03-18 06:42:26.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29773 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29774 (-130.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29769 (-130.8 uncal um), Max = 29776 (-130.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:42:26.574 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29773, posNoise = 3, negNoise = 4
17-03-18 06:42:26.574 -07 000000610 INF: Z Motor: After move to -0.131595, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:26.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:42:26.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:26.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:26.574 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:26.574 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:42:26.574 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:26.574 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:42:26.574 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:42:26.574 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:26.574 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:42:26.574 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:42:26.574 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:42:26.574 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:42:26.584 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:42:26.584 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:42:26.584 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:42:26.584 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:42:26.584 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:42:26.594 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:42:26.594 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:42:26.594 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:42:26.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28924 150\n [Camera]
17-03-18 06:42:26.794 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:42:26.884 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:42:26.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:42:27.254 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:42:27.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:42:27.254 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:27.254 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:27.254 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 06:42:27.264 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:42:27.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:42:27.264 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:27.264 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:27.264 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 06:42:27.454 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28924 849
17-03-18 06:42:27.604 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:42:27.634 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:42:27.634 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:42:27.634 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:27.634 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:42:27.634 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:42:27.634 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:27.634 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:27.644 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:27.644 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:42:27.644 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:42:27.824 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1223
17-03-18 06:42:27.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1223
17-03-18 06:42:27.824 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:27.974 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1223
17-03-18 06:42:27.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1223
17-03-18 06:42:27.974 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:27.974 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:27.974 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 06:42:27.974 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:27.974 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:42:28.014 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:42:28.014 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:42:28.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28924 150' command took 2 ms to send, 1416 ms to get response, and 1422 ms overall
17-03-18 06:42:28.014 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:42:28.014 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.131591420107784. ------
17-03-18 06:42:28.024 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:28.024 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13815 mm
17-03-18 06:42:28.024 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:42:28.024 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:42:28.024 -07 000000461 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 06:42:28.024 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:28.024 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30178, sync = True, waitForSettling = False)
17-03-18 06:42:28.024 -07 000000576 INF: Z Motor: Moving to -0.138146 mm, started at -0.131591 mm, distance = -6.55 um
17-03-18 06:42:28.034 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:42:28.034 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:42:28.044 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:28.044 -07 000000012 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:42:28.054 -07 000000576 INF: FPGA: Xmit ZDACW 30178\n [Z Motor]
17-03-18 06:42:28.054 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:42:28.054 -07 000000461 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:28.054 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:42:28.054 -07 000000461 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:42:28.054 -07 000000461 INF: Y Motor: Moving 1340 steps-17
17-03-18 06:42:28.064 -07 000000576 INF: FPGA: 'ZDACW 30178' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 06:42:28.074 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:42:28.084 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:28.084 -07 000000592 INF: FPGA: Recv ZDACR 30178
17-03-18 06:42:28.094 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:42:28.094 -07 000000576 INF: Z Motor: MoveAbsStepped took 63 ms (did NOT wait for settling yet))
17-03-18 06:42:28.234 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:42:28.234 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:42:28.364 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:42:28.364 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:42:28.364 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:28.374 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:42:28.374 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:42:28.374 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:28.374 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:28.374 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:28.374 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 550 ms.
17-03-18 06:42:28.384 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:42:28.444 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 06:42:28.444 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 06:42:28.504 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:28.504 -07 000000487 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:42:28.514 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:42:28.514 -07 000000461 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:28.514 -07 000000461 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:42:28.514 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.838 mm, average velocity = 2.143 mm/sec
17-03-18 06:42:28.614 -07 000000592 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.999021,
17-03-18 06:42:29.464 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:29.464 -07 000000576 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:42:29.474 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:29.474 -07 000000461 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:29.504 -07 000000461 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:29.504 -07 000000461 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:42:29.504 -07 000000461 INF: Y Motor: Moved to 63.2227 after 1478 ms (table move)
17-03-18 06:42:29.504 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138146 mm (DAC = 30178)
17-03-18 06:42:29.504 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:29.514 -07 000000382 INF: FPGA: Recv ZSGSRD 30790
17-03-18 06:42:29.514 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:42:29.514 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:29.514 -07 000000430 INF: FPGA: Recv ZSGSRD 30797
17-03-18 06:42:29.524 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:29.524 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:29.524 -07 000000461 INF: FPGA: Recv ZSGSRD 30796
17-03-18 06:42:29.534 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:29.534 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:29.534 -07 000000012 INF: FPGA: Recv ZSGSRD 30791
17-03-18 06:42:29.544 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:29.544 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:29.544 -07 000000461 INF: FPGA: Recv ZSGSRD 30789
17-03-18 06:42:29.554 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:29.554 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:29.554 -07 000000487 INF: FPGA: Recv ZSGSRD 30789
17-03-18 06:42:29.564 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:29.564 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:29.564 -07 000000462 INF: FPGA: Recv ZSGSRD 30793
17-03-18 06:42:29.574 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:29.574 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:29.574 -07 000000629 INF: FPGA: Recv ZSGSRD 30799
17-03-18 06:42:29.584 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:29.584 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:29.584 -07 000000012 INF: FPGA: Recv ZSGSRD 30788
17-03-18 06:42:29.594 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:29.594 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:29.594 -07 000000462 INF: FPGA: Recv ZSGSRD 30801
17-03-18 06:42:29.604 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:29.604 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:29.604 -07 000000012 INF: FPGA: Recv ZPIEZORD 26553
17-03-18 06:42:29.614 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:29.614 -07 000000424 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.605 V. Piezo Error = -9.3 V.
17-03-18 06:42:29.614 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30793 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30792 (-137.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30788 (-137.3 uncal um), Max = 30801 (-137.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:42:29.614 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30793, posNoise = 8, negNoise = 5
17-03-18 06:42:29.614 -07 000000424 INF: Z Motor: After move to -0.138146, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:29.614 -07 000000424 INF: Z Motor: Settle wait time = 1481 ms, measure time = 103 ms (allowed 150 ms), total time = 1584 ms
17-03-18 06:42:29.614 -07 000000424 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:42:29.664 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-18 06:42:29.664 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:29.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:29.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:29.664 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:29.664 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:29.664 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:29.674 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:29.674 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:29.674 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:29.674 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:29.674 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:29.684 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:42:29.684 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:42:29.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:29.724 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:42:30.024 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:42:30.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:42:30.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:30.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 06:42:30.064 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:42:30.064 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:30.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 379 ms to get response, and 386 ms overall
17-03-18 06:42:30.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:42:30.144 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:30.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:42:30.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:42:30.164 -07 000000424 INF: Autofocus start
17-03-18 06:42:30.164 -07 000000424 INF: MeasureProfile start
17-03-18 06:42:30.164 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:30.164 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:30.174 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:30.174 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:30.174 -07 000000424 INF: MeasureProfile done
17-03-18 06:42:30.174 -07 000000424 INF: X=-48  Z correction [um]=-0.2370583
17-03-18 06:42:30.174 -07 000000424 INF: Autofocus finished
17-03-18 06:42:30.374 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:42:30.374 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:42:30.374 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.13814411649238. ----------
17-03-18 06:42:30.374 -07 000000610 INF: Cycle	152	Tile	5	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:42:30.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28639, sync = True, waitForSettling = True)
17-03-18 06:42:30.384 -07 000000610 INF: Z Motor: Moving to -0.131101 mm, started at -0.138144 mm, distance = 7.04 um
17-03-18 06:42:30.384 -07 000000610 INF: FPGA: Xmit ZDACW 28639\n [Z Motor]
17-03-18 06:42:30.384 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:42:30.394 -07 000000610 INF: FPGA: 'ZDACW 28639' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:30.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:30.394 -07 000000576 INF: FPGA: Recv ZDACR 28639
17-03-18 06:42:30.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:30.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:42:30.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:30.554 -07 000000592 INF: FPGA: Recv ZSGSRD 29700
17-03-18 06:42:30.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:30.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:30.564 -07 000000592 INF: FPGA: Recv ZSGSRD 29699
17-03-18 06:42:30.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:30.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:30.574 -07 000000576 INF: FPGA: Recv ZSGSRD 29696
17-03-18 06:42:30.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:30.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:30.584 -07 000000629 INF: FPGA: Recv ZSGSRD 29695
17-03-18 06:42:30.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:30.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:30.594 -07 000000592 INF: FPGA: Recv ZSGSRD 29697
17-03-18 06:42:30.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:30.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:30.604 -07 000000487 INF: FPGA: Recv ZSGSRD 29694
17-03-18 06:42:30.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:30.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:30.614 -07 000000592 INF: FPGA: Recv ZSGSRD 29695
17-03-18 06:42:30.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:30.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:30.624 -07 000000576 INF: FPGA: Recv ZSGSRD 29699
17-03-18 06:42:30.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:30.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:30.634 -07 000000576 INF: FPGA: Recv ZSGSRD 29696
17-03-18 06:42:30.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:30.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:30.644 -07 000000487 INF: FPGA: Recv ZSGSRD 29691
17-03-18 06:42:30.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:30.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:30.654 -07 000000629 INF: FPGA: Recv ZPIEZORD 25135
17-03-18 06:42:30.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:30.664 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -10.0 V.
17-03-18 06:42:30.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29696 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29696 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29691 (-130.3 uncal um), Max = 29700 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:42:30.664 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29696, posNoise = 4, negNoise = 5
17-03-18 06:42:30.664 -07 000000610 INF: Z Motor: After move to -0.131101, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:30.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:42:30.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:30.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:30.664 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:30.664 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:30.664 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:42:30.664 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:42:30.664 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:42:30.664 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:30.664 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:42:30.664 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:42:30.664 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:30.664 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:42:30.664 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:42:30.664 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:42:30.664 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:30.664 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:42:30.674 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:42:30.674 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:42:30.674 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:42:30.674 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:42:30.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28816 150\n [Camera]
17-03-18 06:42:30.884 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:42:31.344 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:42:31.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:42:31.344 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:31.344 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:42:31.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:42:31.354 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:31.354 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:31.354 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:42:31.354 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:31.354 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:42:31.534 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28816 849
17-03-18 06:42:31.684 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:42:31.734 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:42:31.734 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:42:31.734 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:31.744 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:31.744 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:42:31.744 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:42:31.744 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:42:31.744 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:31.744 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:31.754 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:42:31.884 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:42:31.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:42:31.914 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:42:31.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:42:31.914 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:31.914 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:42:31.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:42:31.914 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:32.034 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:32.034 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:42:32.034 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:32.034 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 06:42:32.104 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:42:32.104 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:42:32.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28816 150' command took 2 ms to send, 1414 ms to get response, and 1422 ms overall
17-03-18 06:42:32.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:42:32.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.131096755772868. ------
17-03-18 06:42:32.114 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:32.114 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13756 mm
17-03-18 06:42:32.114 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:42:32.114 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:42:32.114 -07 000000487 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 06:42:32.124 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:32.434 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:42:32.434 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:42:32.434 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:32.434 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:42:32.434 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:42:32.434 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:32.444 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:32.444 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-18 06:42:32.444 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:32.444 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 532 ms.
17-03-18 06:42:32.464 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:32.464 -07 000000579 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:42:32.464 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 347 ms to get response, and 356 ms overall
17-03-18 06:42:32.464 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 337 ms to get response, and 353 ms overall
17-03-18 06:42:32.464 -07 000000487 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:32.464 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:42:32.464 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 30050, sync = True, waitForSettling = False)
17-03-18 06:42:32.464 -07 000000611 INF: Z Motor: Moving to -0.137560 mm, started at -0.131097 mm, distance = -6.46 um
17-03-18 06:42:32.474 -07 000000611 INF: FPGA: Xmit ZDACW 30050\n [Z Motor]
17-03-18 06:42:32.474 -07 000000487 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:42:32.474 -07 000000487 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:42:32.474 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 06:42:32.484 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:42:32.484 -07 000000611 INF: FPGA: 'ZDACW 30050' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:42:32.494 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:32.494 -07 000000585 INF: FPGA: Recv ZDACR 30050
17-03-18 06:42:32.504 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:42:32.504 -07 000000611 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 06:42:32.674 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:42:32.674 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-18 06:42:32.854 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 06:42:32.854 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 06:42:32.904 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:32.914 -07 000000585 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:42:32.924 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:32.924 -07 000000487 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:32.924 -07 000000487 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 06:42:32.924 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.176 mm/sec
17-03-18 06:42:33.874 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:33.874 -07 000000382 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:42:33.884 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:33.884 -07 000000487 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:33.914 -07 000000487 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:33.914 -07 000000487 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:42:33.914 -07 000000487 INF: Y Motor: Moved to 64.0562 after 1798 ms (table move)
17-03-18 06:42:33.914 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137560 mm (DAC = 30050)
17-03-18 06:42:33.914 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:33.914 -07 000000474 INF: FPGA: Recv ZSGSRD 30709
17-03-18 06:42:33.924 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:42:33.924 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:33.924 -07 000000462 INF: FPGA: Recv ZSGSRD 30703
17-03-18 06:42:33.934 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:33.934 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:33.934 -07 000000585 INF: FPGA: Recv ZSGSRD 30707
17-03-18 06:42:33.944 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:33.944 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:33.944 -07 000000579 INF: FPGA: Recv ZSGSRD 30698
17-03-18 06:42:33.954 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:33.954 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:33.954 -07 000000480 INF: FPGA: Recv ZSGSRD 30708
17-03-18 06:42:33.964 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:33.974 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:33.974 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.012614,
17-03-18 06:42:33.974 -07 000000585 INF: FPGA: Recv ZSGSRD 30708
17-03-18 06:42:33.984 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:42:33.994 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:33.994 -07 000000462 INF: FPGA: Recv ZSGSRD 30703
17-03-18 06:42:34.004 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:42:34.004 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:34.004 -07 000000585 INF: FPGA: Recv ZSGSRD 30701
17-03-18 06:42:34.014 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:34.024 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:34.024 -07 000000424 INF: FPGA: Recv ZSGSRD 30707
17-03-18 06:42:34.034 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:42:34.034 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:34.034 -07 000000585 INF: FPGA: Recv ZSGSRD 30702
17-03-18 06:42:34.044 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:34.064 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:34.064 -07 000000474 INF: FPGA: Recv ZPIEZORD 26476
17-03-18 06:42:34.074 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:42:34.074 -07 000000592 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.585 V. Piezo Error = -9.3 V.
17-03-18 06:42:34.074 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30705 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30705 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30698 (-136.7 uncal um), Max = 30709 (-136.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:42:34.074 -07 000000592 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30705, posNoise = 4, negNoise = 7
17-03-18 06:42:34.074 -07 000000592 INF: Z Motor: After move to -0.137560, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:34.074 -07 000000592 INF: Z Motor: Settle wait time = 1446 ms, measure time = 156 ms (allowed 150 ms), total time = 1602 ms
17-03-18 06:42:34.074 -07 000000592 INF: Z Motor: Warning: Actual position measuring time = 156 ms, longer than max expected time of 150 ms
17-03-18 06:42:34.074 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1960 ms
17-03-18 06:42:34.074 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:34.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:34.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:34.074 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:34.074 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:34.074 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:34.084 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:34.084 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:42:34.084 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:34.084 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:34.084 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:34.094 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:42:34.094 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:42:34.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:34.134 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:42:34.434 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:42:34.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:42:34.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:34.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 06:42:34.474 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:42:34.474 -07 000000487 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:34.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:42:34.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:42:34.554 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:34.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:42:34.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:42:34.574 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:34.574 -07 000000012 INF: Autofocus start
17-03-18 06:42:34.574 -07 000000012 INF: MeasureProfile start
17-03-18 06:42:34.574 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:34.584 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:34.584 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:34.584 -07 000000012 INF: MeasureProfile done
17-03-18 06:42:34.584 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:42:34.584 -07 000000012 INF: Autofocus finished
17-03-18 06:42:34.784 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:42:34.784 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:42:34.784 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.137578785823905. ----------
17-03-18 06:42:34.784 -07 000000610 INF: Cycle	152	Tile	6	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:42:34.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28558, sync = True, waitForSettling = True)
17-03-18 06:42:34.794 -07 000000610 INF: Z Motor: Moving to -0.130730 mm, started at -0.137579 mm, distance = 6.85 um
17-03-18 06:42:34.794 -07 000000610 INF: FPGA: Xmit ZDACW 28558\n [Z Motor]
17-03-18 06:42:34.794 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:42:34.804 -07 000000610 INF: FPGA: 'ZDACW 28558' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:34.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:34.804 -07 000000461 INF: FPGA: Recv ZDACR 28558
17-03-18 06:42:34.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:34.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:42:34.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:34.964 -07 000000382 INF: FPGA: Recv ZSGSRD 29641
17-03-18 06:42:34.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:34.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:34.974 -07 000000462 INF: FPGA: Recv ZSGSRD 29645
17-03-18 06:42:34.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:34.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:34.984 -07 000000576 INF: FPGA: Recv ZSGSRD 29643
17-03-18 06:42:34.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:34.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:34.994 -07 000000502 INF: FPGA: Recv ZSGSRD 29639
17-03-18 06:42:35.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:35.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:35.004 -07 000000461 INF: FPGA: Recv ZSGSRD 29635
17-03-18 06:42:35.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:35.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:35.014 -07 000000480 INF: FPGA: Recv ZSGSRD 29641
17-03-18 06:42:35.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:35.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:35.024 -07 000000592 INF: FPGA: Recv ZSGSRD 29633
17-03-18 06:42:35.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:35.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:35.034 -07 000000592 INF: FPGA: Recv ZSGSRD 29639
17-03-18 06:42:35.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:42:35.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:35.044 -07 000000462 INF: FPGA: Recv ZSGSRD 29639
17-03-18 06:42:35.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:35.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:35.054 -07 000000012 INF: FPGA: Recv ZSGSRD 29635
17-03-18 06:42:35.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:35.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:35.064 -07 000000012 INF: FPGA: Recv ZPIEZORD 25059
17-03-18 06:42:35.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:35.074 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -10.0 V.
17-03-18 06:42:35.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29639 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29639 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29633 (-129.9 uncal um), Max = 29645 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:42:35.074 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29639, posNoise = 6, negNoise = 6
17-03-18 06:42:35.074 -07 000000610 INF: Z Motor: After move to -0.130730, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:35.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:42:35.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:35.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:35.074 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:35.074 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:42:35.074 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:35.074 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:35.074 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:42:35.074 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:42:35.074 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:42:35.074 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:42:35.074 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:42:35.074 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:42:35.074 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:42:35.074 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:42:35.074 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:35.074 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:42:35.094 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 06:42:35.094 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:42:35.094 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:42:35.094 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:42:35.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28734 150\n [Camera]
17-03-18 06:42:35.294 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:42:35.764 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:42:35.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:42:35.764 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:35.764 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:42:35.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:42:35.764 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:35.764 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:35.764 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:42:35.774 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:35.774 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:42:35.954 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28734 852
17-03-18 06:42:36.104 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:42:36.154 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 06:42:36.154 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:42:36.154 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:36.154 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:42:36.154 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:42:36.154 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:36.154 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:36.164 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:36.164 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:42:36.164 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:42:36.324 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:42:36.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:42:36.324 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:36.324 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:36.324 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:42:36.334 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:42:36.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:42:36.334 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:36.334 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:36.334 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) start.
17-03-18 06:42:36.514 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:42:36.514 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:42:36.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28734 150' command took 2 ms to send, 1419 ms to get response, and 1422 ms overall
17-03-18 06:42:36.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:42:36.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.130730575680788. ------
17-03-18 06:42:36.644 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13736 mm
17-03-18 06:42:36.644 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:42:36.644 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:36.644 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:42:36.644 -07 000000629 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 06:42:36.654 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:36.734 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:42:36.734 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:42:36.734 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:36.734 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:42:36.734 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:42:36.734 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:36.734 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:36.734 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:42:36.734 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:42:36.744 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:42:36.744 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30006, sync = True, waitForSettling = False)
17-03-18 06:42:36.744 -07 000000012 INF: Z Motor: Moving to -0.137359 mm, started at -0.130731 mm, distance = -6.63 um
17-03-18 06:42:36.744 -07 000000012 INF: FPGA: Xmit ZDACW 30006\n [Z Motor]
17-03-18 06:42:36.754 -07 000000592 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:36.754 -07 000000592 INF: FPGA: Recv YRDPOS 131188
17-03-18 06:42:36.754 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 92 ms to get response, and 106 ms overall
17-03-18 06:42:36.754 -07 000000629 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:36.754 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 102 ms to get response, and 109 ms overall
17-03-18 06:42:36.754 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:42:36.754 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:42:36.754 -07 000000012 INF: FPGA: 'ZDACW 30006' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 06:42:36.764 -07 000000629 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:42:36.764 -07 000000629 INF: Y Motor: Moving 1338 steps-13
17-03-18 06:42:36.764 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:42:36.774 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:36.774 -07 000000592 INF: FPGA: Recv ZDACR 30006
17-03-18 06:42:36.784 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:42:36.784 -07 000000012 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 06:42:36.884 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:42:36.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:42:36.954 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:42:36.954 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 203 ms overall
17-03-18 06:42:37.134 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:42:37.134 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 06:42:37.194 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:37.194 -07 000000487 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:42:37.204 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:42:37.204 -07 000000629 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:37.204 -07 000000629 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:42:37.204 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.836 mm, average velocity = 2.213 mm/sec
17-03-18 06:42:38.154 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:38.154 -07 000000487 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:42:38.164 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:38.164 -07 000000629 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:38.194 -07 000000629 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:38.194 -07 000000629 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:42:38.194 -07 000000629 INF: Y Motor: Moved to 64.8784 after 1547 ms (table move)
17-03-18 06:42:38.194 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137359 mm (DAC = 30006)
17-03-18 06:42:38.194 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:38.204 -07 000000581 INF: FPGA: Recv ZSGSRD 30670
17-03-18 06:42:38.204 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:42:38.204 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:38.204 -07 000000592 INF: FPGA: Recv ZSGSRD 30672
17-03-18 06:42:38.214 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:42:38.214 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:38.214 -07 000000012 INF: FPGA: Recv ZSGSRD 30672
17-03-18 06:42:38.224 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:38.224 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:38.224 -07 000000592 INF: FPGA: Recv ZSGSRD 30669
17-03-18 06:42:38.234 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:38.234 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:38.234 -07 000000444 INF: FPGA: Recv ZSGSRD 30668
17-03-18 06:42:38.244 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:38.244 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:38.244 -07 000000592 INF: FPGA: Recv ZSGSRD 30668
17-03-18 06:42:38.254 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:38.254 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:38.254 -07 000000444 INF: FPGA: Recv ZSGSRD 30672
17-03-18 06:42:38.264 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:38.264 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:38.264 -07 000000487 INF: FPGA: Recv ZSGSRD 30668
17-03-18 06:42:38.274 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:38.274 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:38.274 -07 000000581 INF: FPGA: Recv ZSGSRD 30677
17-03-18 06:42:38.284 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:38.284 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:38.284 -07 000000444 INF: FPGA: Recv ZSGSRD 30677
17-03-18 06:42:38.294 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:38.294 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:38.294 -07 000000012 INF: FPGA: Recv ZPIEZORD 26459
17-03-18 06:42:38.304 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:38.304 -07 000000462 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.579 V. Piezo Error = -9.3 V.
17-03-18 06:42:38.304 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30671 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30671 (-136.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30668 (-136.5 uncal um), Max = 30677 (-136.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:42:38.304 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30671, posNoise = 6, negNoise = 3
17-03-18 06:42:38.304 -07 000000462 INF: Z Motor: After move to -0.137359, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:38.304 -07 000000462 INF: Z Motor: Settle wait time = 1449 ms, measure time = 102 ms (allowed 150 ms), total time = 1551 ms
17-03-18 06:42:38.304 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:42:38.354 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1706 ms
17-03-18 06:42:38.354 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:38.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:38.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:38.354 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:38.364 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:38.364 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:38.364 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:38.364 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:38.364 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:38.364 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:38.364 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:38.374 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:42:38.374 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:42:38.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:38.414 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:42:38.714 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:42:38.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:42:38.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:38.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:42:38.754 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:42:38.754 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:38.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:42:38.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 06:42:38.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:38.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:42:38.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 06:42:38.854 -07 000000444 INF: Autofocus start
17-03-18 06:42:38.854 -07 000000444 INF: MeasureProfile start
17-03-18 06:42:38.854 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:38.854 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:38.864 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:38.864 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:38.864 -07 000000444 INF: MeasureProfile done
17-03-18 06:42:38.864 -07 000000444 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:42:38.864 -07 000000444 INF: Autofocus finished
17-03-18 06:42:39.064 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:42:39.064 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 208 ms overall
17-03-18 06:42:39.074 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.137360362611085. ----------
17-03-18 06:42:39.074 -07 000000610 INF: Cycle	152	Tile	7	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:42:39.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28547, sync = True, waitForSettling = True)
17-03-18 06:42:39.074 -07 000000610 INF: Z Motor: Moving to -0.130680 mm, started at -0.137360 mm, distance = 6.68 um
17-03-18 06:42:39.074 -07 000000610 INF: FPGA: Xmit ZDACW 28547\n [Z Motor]
17-03-18 06:42:39.084 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:42:39.084 -07 000000610 INF: FPGA: 'ZDACW 28547' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:42:39.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:39.084 -07 000000629 INF: FPGA: Recv ZDACR 28547
17-03-18 06:42:39.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:42:39.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:42:39.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:39.244 -07 000000487 INF: FPGA: Recv ZSGSRD 29634
17-03-18 06:42:39.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:39.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:39.254 -07 000000012 INF: FPGA: Recv ZSGSRD 29631
17-03-18 06:42:39.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:39.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:39.264 -07 000000592 INF: FPGA: Recv ZSGSRD 29629
17-03-18 06:42:39.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:39.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:39.274 -07 000000012 INF: FPGA: Recv ZSGSRD 29630
17-03-18 06:42:39.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:39.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:39.284 -07 000000581 INF: FPGA: Recv ZSGSRD 29631
17-03-18 06:42:39.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:39.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:39.294 -07 000000487 INF: FPGA: Recv ZSGSRD 29641
17-03-18 06:42:39.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:39.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:39.304 -07 000000462 INF: FPGA: Recv ZSGSRD 29629
17-03-18 06:42:39.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:39.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:39.314 -07 000000487 INF: FPGA: Recv ZSGSRD 29632
17-03-18 06:42:39.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:39.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:39.324 -07 000000012 INF: FPGA: Recv ZSGSRD 29627
17-03-18 06:42:39.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:39.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:39.334 -07 000000629 INF: FPGA: Recv ZSGSRD 29625
17-03-18 06:42:39.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:39.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:39.344 -07 000000462 INF: FPGA: Recv ZPIEZORD 25078
17-03-18 06:42:39.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:39.354 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -10.0 V.
17-03-18 06:42:39.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29631 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29630 (-129.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29625 (-129.9 uncal um), Max = 29641 (-130.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:42:39.354 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29631, posNoise = 10, negNoise = 6
17-03-18 06:42:39.354 -07 000000610 INF: Z Motor: After move to -0.130680, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:39.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 06:42:39.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:39.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:39.354 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:42:39.354 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:39.354 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:42:39.354 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:42:39.354 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:39.354 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:42:39.354 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:42:39.354 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:39.354 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:42:39.354 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:42:39.364 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:39.364 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:42:39.364 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:42:39.364 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:42:39.374 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:42:39.374 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:42:39.374 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:42:39.374 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:42:39.384 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.014009,
17-03-18 06:42:39.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28723 150\n [Camera]
17-03-18 06:42:39.584 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:42:40.054 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:42:40.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:42:40.054 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:40.054 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:42:40.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:42:40.064 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:40.064 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:40.064 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 06:42:40.064 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:40.064 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:42:40.244 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28723 849
17-03-18 06:42:40.394 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:42:40.434 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:42:40.434 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:42:40.434 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:40.444 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:40.444 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:42:40.444 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 06:42:40.444 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:42:40.444 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:40.454 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:40.454 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:42:40.614 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:42:40.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:42:40.624 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:40.624 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:40.624 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 06:42:40.624 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:42:40.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:42:40.624 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:40.624 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:40.624 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 06:42:40.814 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:42:40.814 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:42:40.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28723 150' command took 2 ms to send, 1412 ms to get response, and 1438 ms overall
17-03-18 06:42:40.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:42:40.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.130679181983654. ------
17-03-18 06:42:40.814 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:40.814 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13740 mm
17-03-18 06:42:40.814 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:42:40.824 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:42:40.824 -07 000000462 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 06:42:40.824 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:41.024 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:42:41.024 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:42:41.024 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:41.034 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:42:41.034 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:42:41.034 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:41.034 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:41.034 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:42:41.034 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:41.044 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:42:41.044 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30015, sync = True, waitForSettling = False)
17-03-18 06:42:41.044 -07 000000502 INF: Z Motor: Moving to -0.137400 mm, started at -0.130679 mm, distance = -6.72 um
17-03-18 06:42:41.044 -07 000000502 INF: FPGA: Xmit ZDACW 30015\n [Z Motor]
17-03-18 06:42:41.054 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:41.054 -07 000000581 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:42:41.054 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 06:42:41.054 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 221 ms to get response, and 229 ms overall
17-03-18 06:42:41.054 -07 000000502 INF: FPGA: 'ZDACW 30015' command took 0 ms to send, 1 ms to get response, and 8 ms overall
17-03-18 06:42:41.054 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:41.054 -07 000000462 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:41.054 -07 000000462 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:42:41.054 -07 000000462 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:42:41.054 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 231 ms to get response, and 232 ms overall
17-03-18 06:42:41.054 -07 000000581 INF: FPGA: Recv ZDACR 30015
17-03-18 06:42:41.064 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:42:41.064 -07 000000502 INF: Z Motor: MoveAbsStepped took 16 ms (did NOT wait for settling yet))
17-03-18 06:42:41.064 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:42:41.074 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:42:41.274 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:42:41.274 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-18 06:42:41.434 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 06:42:41.434 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 06:42:41.494 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:41.494 -07 000000502 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:42:41.504 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:41.504 -07 000000462 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:41.504 -07 000000462 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 06:42:41.504 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.187 mm/sec
17-03-18 06:42:41.884 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:42:41.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:42:42.454 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:42.454 -07 000000502 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:42:42.464 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:42.464 -07 000000462 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:42.504 -07 000000462 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:42.504 -07 000000462 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:42:42.504 -07 000000462 INF: Y Motor: Moved to 65.7134 after 1679 ms (table move)
17-03-18 06:42:42.504 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137400 mm (DAC = 30015)
17-03-18 06:42:42.504 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:42.504 -07 000000444 INF: FPGA: Recv ZSGSRD 30679
17-03-18 06:42:42.514 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:42:42.514 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:42.514 -07 000000502 INF: FPGA: Recv ZSGSRD 30668
17-03-18 06:42:42.524 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:42.524 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:42.524 -07 000000462 INF: FPGA: Recv ZSGSRD 30674
17-03-18 06:42:42.534 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:42.534 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:42.534 -07 000000444 INF: FPGA: Recv ZSGSRD 30677
17-03-18 06:42:42.544 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:42.544 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:42.544 -07 000000462 INF: FPGA: Recv ZSGSRD 30681
17-03-18 06:42:42.554 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:42.554 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:42.554 -07 000000444 INF: FPGA: Recv ZSGSRD 30679
17-03-18 06:42:42.564 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:42.564 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:42.564 -07 000000502 INF: FPGA: Recv ZSGSRD 30686
17-03-18 06:42:42.574 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:42.574 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:42.574 -07 000000462 INF: FPGA: Recv ZSGSRD 30681
17-03-18 06:42:42.584 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:42.584 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:42.584 -07 000000444 INF: FPGA: Recv ZSGSRD 30681
17-03-18 06:42:42.594 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:42.594 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:42.594 -07 000000581 INF: FPGA: Recv ZSGSRD 30673
17-03-18 06:42:42.604 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:42.604 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:42.604 -07 000000502 INF: FPGA: Recv ZPIEZORD 26482
17-03-18 06:42:42.614 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:42.614 -07 000000592 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.580 V. Piezo Error = -9.2 V.
17-03-18 06:42:42.614 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30678 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30679 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30668 (-136.5 uncal um), Max = 30686 (-136.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:42:42.614 -07 000000592 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30678, posNoise = 8, negNoise = 10
17-03-18 06:42:42.614 -07 000000592 INF: Z Motor: After move to -0.137400, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:42.614 -07 000000592 INF: Z Motor: Settle wait time = 1461 ms, measure time = 106 ms (allowed 150 ms), total time = 1567 ms
17-03-18 06:42:42.614 -07 000000592 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:42:42.664 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1841 ms
17-03-18 06:42:42.664 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:42.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:42.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:42.664 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:42.664 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:42.664 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:42.664 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:42.664 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:42.664 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:42.674 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:42.674 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:42.674 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:42:42.674 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:42:42.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:42.724 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 06:42:43.024 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 06:42:43.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 06:42:43.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:43.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) start.
17-03-18 06:42:43.064 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:42:43.064 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:43.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:42:43.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) end. Duration was 122 ms.
17-03-18 06:42:43.154 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:43.154 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:42:43.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 06:42:43.164 -07 000000592 INF: Autofocus start
17-03-18 06:42:43.164 -07 000000592 INF: MeasureProfile start
17-03-18 06:42:43.164 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:43.164 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:43.174 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:43.174 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:43.174 -07 000000592 INF: MeasureProfile done
17-03-18 06:42:43.174 -07 000000592 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:42:43.174 -07 000000592 INF: Autofocus finished
17-03-18 06:42:43.374 -07 000000592 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:42:43.374 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:42:43.384 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137405332096078. ----------
17-03-18 06:42:43.384 -07 000000610 INF: Cycle	152	Tile	8	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:42:43.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28522, sync = True, waitForSettling = True)
17-03-18 06:42:43.384 -07 000000610 INF: Z Motor: Moving to -0.130565 mm, started at -0.137405 mm, distance = 6.84 um
17-03-18 06:42:43.384 -07 000000610 INF: FPGA: Xmit ZDACW 28522\n [Z Motor]
17-03-18 06:42:43.384 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:42:43.394 -07 000000610 INF: FPGA: 'ZDACW 28522' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:42:43.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:43.394 -07 000000502 INF: FPGA: Recv ZDACR 28522
17-03-18 06:42:43.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:43.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:42:43.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:43.554 -07 000000480 INF: FPGA: Recv ZSGSRD 29610
17-03-18 06:42:43.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:43.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:43.564 -07 000000382 INF: FPGA: Recv ZSGSRD 29617
17-03-18 06:42:43.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:43.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:43.574 -07 000000592 INF: FPGA: Recv ZSGSRD 29613
17-03-18 06:42:43.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:43.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:43.584 -07 000000474 INF: FPGA: Recv ZSGSRD 29614
17-03-18 06:42:43.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:43.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:43.594 -07 000000444 INF: FPGA: Recv ZSGSRD 29613
17-03-18 06:42:43.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:43.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:43.604 -07 000000502 INF: FPGA: Recv ZSGSRD 29615
17-03-18 06:42:43.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:43.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:43.614 -07 000000382 INF: FPGA: Recv ZSGSRD 29617
17-03-18 06:42:43.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:43.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:43.624 -07 000000502 INF: FPGA: Recv ZSGSRD 29616
17-03-18 06:42:43.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:43.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:43.634 -07 000000480 INF: FPGA: Recv ZSGSRD 29611
17-03-18 06:42:43.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:43.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:43.644 -07 000000444 INF: FPGA: Recv ZSGSRD 29614
17-03-18 06:42:43.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:43.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:43.654 -07 000000592 INF: FPGA: Recv ZPIEZORD 25096
17-03-18 06:42:43.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:43.664 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.9 V.
17-03-18 06:42:43.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29614 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29614 (-129.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29610 (-129.8 uncal um), Max = 29617 (-129.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:42:43.664 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29614, posNoise = 3, negNoise = 4
17-03-18 06:42:43.664 -07 000000610 INF: Z Motor: After move to -0.130565, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:43.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:42:43.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:43.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:43.664 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:43.664 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:43.664 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:42:43.664 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:43.664 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:42:43.664 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:42:43.664 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:43.664 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:42:43.664 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:42:43.664 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:42:43.674 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:42:43.674 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:42:43.674 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:42:43.674 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:42:43.684 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:42:43.684 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:42:43.684 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:42:43.684 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:42:43.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28699 150\n [Camera]
17-03-18 06:42:43.884 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:42:44.344 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:42:44.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:42:44.354 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:44.354 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:44.354 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:42:44.354 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:42:44.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:42:44.354 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:44.354 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:44.354 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:42:44.544 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28699 849
17-03-18 06:42:44.694 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:42:44.754 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.005817,
17-03-18 06:42:44.754 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:42:44.754 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:42:44.754 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:44.754 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:42:44.754 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:42:44.754 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:44.754 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:44.754 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:42:44.754 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:44.764 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:42:44.914 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:42:44.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:42:44.914 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:44.914 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:44.914 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:42:44.914 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:42:44.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:42:44.914 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:44.914 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:44.914 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:42:45.104 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:42:45.104 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:42:45.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28699 150' command took 2 ms to send, 1416 ms to get response, and 1422 ms overall
17-03-18 06:42:45.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:42:45.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130569970377244. ------
17-03-18 06:42:45.234 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13688 mm
17-03-18 06:42:45.234 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:42:45.234 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:45.234 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:42:45.234 -07 000000444 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 06:42:45.234 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29902, sync = True, waitForSettling = False)
17-03-18 06:42:45.234 -07 000000581 INF: Z Motor: Moving to -0.136883 mm, started at -0.130570 mm, distance = -6.31 um
17-03-18 06:42:45.234 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:45.244 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:45.244 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:45.254 -07 000000581 INF: FPGA: Xmit ZDACW 29902\n [Z Motor]
17-03-18 06:42:45.264 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:42:45.304 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:42:45.304 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:42:45.304 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:45.304 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:42:45.304 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:42:45.304 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:45.314 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:45.314 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:42:45.314 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:42:45.314 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:42:45.324 -07 000000462 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:42:45.324 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:42:45.324 -07 000000581 INF: FPGA: 'ZDACW 29902' command took 0 ms to send, 67 ms to get response, and 93 ms overall
17-03-18 06:42:45.324 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:45.324 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 76 ms to get response, and 93 ms overall
17-03-18 06:42:45.324 -07 000000444 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:45.324 -07 000000444 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:42:45.324 -07 000000444 INF: Y Motor: Moving 1343 steps-19
17-03-18 06:42:45.324 -07 000000462 INF: FPGA: Recv ZDACR 29902
17-03-18 06:42:45.334 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:42:45.334 -07 000000581 INF: Z Motor: MoveAbsStepped took 96 ms (did NOT wait for settling yet))
17-03-18 06:42:45.334 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:42:45.464 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:42:45.464 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:42:45.714 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 06:42:45.714 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 381 ms overall
17-03-18 06:42:45.764 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:45.764 -07 000000581 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:42:45.774 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:42:45.774 -07 000000444 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:45.774 -07 000000444 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:42:45.774 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.839 mm, average velocity = 2.197 mm/sec
17-03-18 06:42:46.724 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:46.724 -07 000000462 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:42:46.734 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:46.734 -07 000000444 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:46.764 -07 000000444 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:46.764 -07 000000444 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:42:46.764 -07 000000444 INF: Y Motor: Moved to 66.5386 after 1531 ms (table move)
17-03-18 06:42:46.764 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136883 mm (DAC = 29902)
17-03-18 06:42:46.764 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:46.774 -07 000000444 INF: FPGA: Recv ZSGSRD 30597
17-03-18 06:42:46.774 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:42:46.774 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:46.774 -07 000000462 INF: FPGA: Recv ZSGSRD 30597
17-03-18 06:42:46.784 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:42:46.784 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:46.784 -07 000000581 INF: FPGA: Recv ZSGSRD 30593
17-03-18 06:42:46.794 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:46.794 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:46.794 -07 000000462 INF: FPGA: Recv ZSGSRD 30592
17-03-18 06:42:46.804 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:46.804 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:46.804 -07 000000581 INF: FPGA: Recv ZSGSRD 30598
17-03-18 06:42:46.814 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:46.814 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:46.814 -07 000000444 INF: FPGA: Recv ZSGSRD 30606
17-03-18 06:42:46.824 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:46.824 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:46.824 -07 000000462 INF: FPGA: Recv ZSGSRD 30599
17-03-18 06:42:46.834 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:46.834 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:46.834 -07 000000444 INF: FPGA: Recv ZSGSRD 30596
17-03-18 06:42:46.844 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:46.844 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:46.844 -07 000000462 INF: FPGA: Recv ZSGSRD 30591
17-03-18 06:42:46.854 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:46.854 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:46.854 -07 000000502 INF: FPGA: Recv ZSGSRD 30597
17-03-18 06:42:46.864 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:46.864 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:46.864 -07 000000462 INF: FPGA: Recv ZPIEZORD 26395
17-03-18 06:42:46.874 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:46.874 -07 000000592 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.563 V. Piezo Error = -9.2 V.
17-03-18 06:42:46.874 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30597 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30597 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30591 (-136.1 uncal um), Max = 30606 (-136.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:42:46.874 -07 000000592 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30597, posNoise = 9, negNoise = 6
17-03-18 06:42:46.874 -07 000000592 INF: Z Motor: After move to -0.136883, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:46.874 -07 000000592 INF: Z Motor: Settle wait time = 1536 ms, measure time = 100 ms (allowed 150 ms), total time = 1636 ms
17-03-18 06:42:46.874 -07 000000592 INF: Z Motor: Waiting extra 50 ms after reading position to reach expected total of 150 ms
17-03-18 06:42:46.884 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:42:46.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:42:46.924 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1689 ms
17-03-18 06:42:46.924 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:46.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:46.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:46.924 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:46.924 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:46.924 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:46.924 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:46.924 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:46.924 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:46.934 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:46.934 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:46.934 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:42:46.934 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:42:46.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:46.984 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:42:47.284 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:42:47.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:42:47.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:47.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:42:47.324 -07 000000462 INF: FPGA: Recv @CAMSNAP 382
17-03-18 06:42:47.324 -07 000000592 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:47.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 06:42:47.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:42:47.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:47.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:42:47.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:42:47.424 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:47.424 -07 000000581 INF: Autofocus start
17-03-18 06:42:47.424 -07 000000581 INF: MeasureProfile start
17-03-18 06:42:47.424 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:47.434 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:42:47.434 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:47.434 -07 000000581 INF: MeasureProfile done
17-03-18 06:42:47.434 -07 000000581 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:42:47.444 -07 000000581 INF: Autofocus finished
17-03-18 06:42:47.634 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:42:47.634 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:42:47.634 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.136884970912595. ----------
17-03-18 06:42:47.644 -07 000000610 INF: Cycle	152	Tile	9	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:42:47.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28410, sync = True, waitForSettling = True)
17-03-18 06:42:47.644 -07 000000610 INF: Z Motor: Moving to -0.130053 mm, started at -0.136885 mm, distance = 6.83 um
17-03-18 06:42:47.644 -07 000000610 INF: FPGA: Xmit ZDACW 28410\n [Z Motor]
17-03-18 06:42:47.644 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 06:42:47.654 -07 000000610 INF: FPGA: 'ZDACW 28410' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:42:47.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:47.654 -07 000000444 INF: FPGA: Recv ZDACR 28410
17-03-18 06:42:47.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:47.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:42:47.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:47.814 -07 000000430 INF: FPGA: Recv ZSGSRD 29528
17-03-18 06:42:47.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:47.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:47.824 -07 000000462 INF: FPGA: Recv ZSGSRD 29539
17-03-18 06:42:47.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:47.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:47.834 -07 000000581 INF: FPGA: Recv ZSGSRD 29534
17-03-18 06:42:47.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:47.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:47.844 -07 000000430 INF: FPGA: Recv ZSGSRD 29534
17-03-18 06:42:47.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:47.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:47.854 -07 000000444 INF: FPGA: Recv ZSGSRD 29538
17-03-18 06:42:47.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:47.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:47.864 -07 000000592 INF: FPGA: Recv ZSGSRD 29536
17-03-18 06:42:47.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:47.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:47.874 -07 000000462 INF: FPGA: Recv ZSGSRD 29538
17-03-18 06:42:47.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:47.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:47.884 -07 000000502 INF: FPGA: Recv ZSGSRD 29528
17-03-18 06:42:47.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:47.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:47.894 -07 000000444 INF: FPGA: Recv ZSGSRD 29532
17-03-18 06:42:47.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:47.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:47.904 -07 000000581 INF: FPGA: Recv ZSGSRD 29534
17-03-18 06:42:47.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:47.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:47.914 -07 000000444 INF: FPGA: Recv ZPIEZORD 25012
17-03-18 06:42:47.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:47.924 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.335 V. Piezo Error = -9.9 V.
17-03-18 06:42:47.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29534 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29534 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29528 (-129.2 uncal um), Max = 29539 (-129.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:42:47.924 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29534, posNoise = 5, negNoise = 6
17-03-18 06:42:47.924 -07 000000610 INF: Z Motor: After move to -0.130053, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:47.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:42:47.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:47.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:47.924 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:47.924 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:42:47.924 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:47.924 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:47.924 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:42:47.924 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:42:47.924 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:47.924 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:42:47.924 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:42:47.924 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:42:47.934 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:42:47.934 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:42:47.934 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:42:47.934 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:42:47.944 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:42:47.944 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:42:47.944 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:42:47.944 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:42:47.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28586 150\n [Camera]
17-03-18 06:42:48.144 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:42:48.614 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:42:48.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:42:48.614 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:48.614 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:42:48.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:42:48.614 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:48.614 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:48.614 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 06:42:48.624 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:48.624 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) start.
17-03-18 06:42:48.804 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28586 849
17-03-18 06:42:48.954 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:42:49.014 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 06:42:49.014 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:42:49.014 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:49.014 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 06:42:49.014 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:42:49.014 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:49.014 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:49.014 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:42:49.014 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:49.024 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:42:49.184 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:42:49.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:42:49.184 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:49.184 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:42:49.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:42:49.184 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:49.184 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:49.184 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:42:49.194 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:49.194 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:42:49.374 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:42:49.374 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:42:49.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28586 150' command took 2 ms to send, 1411 ms to get response, and 1421 ms overall
17-03-18 06:42:49.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:42:49.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130056033405903. ------
17-03-18 06:42:49.374 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:49.374 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13690 mm
17-03-18 06:42:49.374 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:42:49.504 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:49.504 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-18 06:42:49.504 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:42:49.504 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:42:49.504 -07 000000012 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 06:42:49.504 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29906, sync = True, waitForSettling = False)
17-03-18 06:42:49.504 -07 000000424 INF: Z Motor: Moving to -0.136901 mm, started at -0.130056 mm, distance = -6.84 um
17-03-18 06:42:49.514 -07 000000424 INF: FPGA: Xmit ZDACW 29906\n [Z Motor]
17-03-18 06:42:49.514 -07 000000592 INF: FPGA: Recv ZDACW
17-03-18 06:42:49.524 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:49.524 -07 000000424 INF: FPGA: 'ZDACW 29906' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:42:49.524 -07 000000480 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:42:49.534 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:42:49.534 -07 000000012 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:49.534 -07 000000012 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:42:49.534 -07 000000012 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:42:49.544 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:49.544 -07 000000382 INF: FPGA: Recv ZDACR 29906
17-03-18 06:42:49.554 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:42:49.554 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:42:49.554 -07 000000424 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 06:42:49.584 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:42:49.584 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:42:49.584 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:49.584 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:42:49.584 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:42:49.584 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:49.584 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:49.584 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:42:49.594 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:49.594 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:42:49.704 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:42:49.704 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:42:49.924 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 06:42:49.924 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:42:49.984 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:49.984 -07 000000592 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:42:49.994 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:49.994 -07 000000012 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:49.994 -07 000000012 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 06:42:49.994 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 06:42:50.114 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.026244,
17-03-18 06:42:50.944 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:50.944 -07 000000474 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:42:50.954 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:50.954 -07 000000012 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:50.984 -07 000000012 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:50.984 -07 000000012 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:42:50.984 -07 000000012 INF: Y Motor: Moved to 67.3716 after 1478 ms (table move)
17-03-18 06:42:50.984 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136901 mm (DAC = 29906)
17-03-18 06:42:50.984 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:50.984 -07 000000474 INF: FPGA: Recv ZSGSRD 30603
17-03-18 06:42:50.994 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:42:50.994 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:50.994 -07 000000012 INF: FPGA: Recv ZSGSRD 30601
17-03-18 06:42:51.004 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:51.004 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:51.004 -07 000000012 INF: FPGA: Recv ZSGSRD 30599
17-03-18 06:42:51.014 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:51.014 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:51.014 -07 000000474 INF: FPGA: Recv ZSGSRD 30594
17-03-18 06:42:51.024 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:51.024 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:51.024 -07 000000474 INF: FPGA: Recv ZSGSRD 30599
17-03-18 06:42:51.034 -07 000000581 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:51.034 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:51.034 -07 000000424 INF: FPGA: Recv ZSGSRD 30593
17-03-18 06:42:51.044 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:51.044 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:51.044 -07 000000424 INF: FPGA: Recv ZSGSRD 30601
17-03-18 06:42:51.054 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:51.054 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:51.054 -07 000000474 INF: FPGA: Recv ZSGSRD 30605
17-03-18 06:42:51.064 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:51.064 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:51.064 -07 000000424 INF: FPGA: Recv ZSGSRD 30601
17-03-18 06:42:51.074 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:51.074 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:51.074 -07 000000474 INF: FPGA: Recv ZSGSRD 30602
17-03-18 06:42:51.084 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:51.084 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:51.084 -07 000000474 INF: FPGA: Recv ZPIEZORD 26397
17-03-18 06:42:51.094 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:51.094 -07 000000581 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.563 V. Piezo Error = -9.2 V.
17-03-18 06:42:51.094 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30600 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30601 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30593 (-136.1 uncal um), Max = 30605 (-136.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:42:51.094 -07 000000581 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30600, posNoise = 5, negNoise = 7
17-03-18 06:42:51.094 -07 000000581 INF: Z Motor: After move to -0.136901, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:51.094 -07 000000581 INF: Z Motor: Settle wait time = 1481 ms, measure time = 105 ms (allowed 150 ms), total time = 1586 ms
17-03-18 06:42:51.094 -07 000000581 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:42:51.144 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1761 ms
17-03-18 06:42:51.144 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:51.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:51.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:51.144 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:51.144 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:51.144 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:51.144 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:51.144 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:42:51.144 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:51.154 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:42:51.154 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:51.154 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:42:51.154 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:42:51.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:51.204 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:42:51.504 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:42:51.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:42:51.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:51.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:42:51.544 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:42:51.544 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:51.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:42:51.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:42:51.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:51.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:42:51.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:42:51.644 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:51.644 -07 000000012 INF: Autofocus start
17-03-18 06:42:51.644 -07 000000012 INF: MeasureProfile start
17-03-18 06:42:51.644 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:51.654 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:51.654 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:51.664 -07 000000012 INF: MeasureProfile done
17-03-18 06:42:51.664 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:42:51.664 -07 000000012 INF: Autofocus finished
17-03-18 06:42:51.854 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:42:51.854 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:42:51.854 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.13690424354902. ----------
17-03-18 06:42:51.854 -07 000000610 INF: Cycle	152	Tile	10	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:42:51.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28413, sync = True, waitForSettling = True)
17-03-18 06:42:51.864 -07 000000610 INF: Z Motor: Moving to -0.130066 mm, started at -0.136904 mm, distance = 6.84 um
17-03-18 06:42:51.864 -07 000000610 INF: FPGA: Xmit ZDACW 28413\n [Z Motor]
17-03-18 06:42:51.864 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:42:51.874 -07 000000610 INF: FPGA: 'ZDACW 28413' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:51.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:51.874 -07 000000424 INF: FPGA: Recv ZDACR 28413
17-03-18 06:42:51.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:51.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:42:51.884 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:42:51.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:42:52.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:52.034 -07 000000424 INF: FPGA: Recv ZSGSRD 29537
17-03-18 06:42:52.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:52.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:52.044 -07 000000581 INF: FPGA: Recv ZSGSRD 29534
17-03-18 06:42:52.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:52.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:52.054 -07 000000474 INF: FPGA: Recv ZSGSRD 29538
17-03-18 06:42:52.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:52.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:52.064 -07 000000581 INF: FPGA: Recv ZSGSRD 29539
17-03-18 06:42:52.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:52.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:52.074 -07 000000474 INF: FPGA: Recv ZSGSRD 29536
17-03-18 06:42:52.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:52.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:52.084 -07 000000012 INF: FPGA: Recv ZSGSRD 29531
17-03-18 06:42:52.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:52.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:52.094 -07 000000581 INF: FPGA: Recv ZSGSRD 29539
17-03-18 06:42:52.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:52.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:52.104 -07 000000012 INF: FPGA: Recv ZSGSRD 29538
17-03-18 06:42:52.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:52.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:52.114 -07 000000581 INF: FPGA: Recv ZSGSRD 29534
17-03-18 06:42:52.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:52.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:52.124 -07 000000012 INF: FPGA: Recv ZSGSRD 29536
17-03-18 06:42:52.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:52.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:52.134 -07 000000581 INF: FPGA: Recv ZPIEZORD 24988
17-03-18 06:42:52.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:52.144 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -10.0 V.
17-03-18 06:42:52.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29536 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29536 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29531 (-129.3 uncal um), Max = 29539 (-129.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:42:52.144 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29536, posNoise = 3, negNoise = 5
17-03-18 06:42:52.144 -07 000000610 INF: Z Motor: After move to -0.130066, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:52.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:42:52.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:52.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:52.144 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:52.144 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:52.144 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:42:52.144 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:52.144 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:42:52.144 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:42:52.144 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:42:52.144 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:42:52.144 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:42:52.144 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:42:52.154 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:42:52.154 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:42:52.154 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:42:52.154 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:42:52.164 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:42:52.164 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:42:52.164 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:42:52.164 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:42:52.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28590 150\n [Camera]
17-03-18 06:42:52.364 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:42:52.834 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-18 06:42:52.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-18 06:42:52.834 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:52.834 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-18 06:42:52.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-18 06:42:52.834 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:52.834 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:52.834 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:42:52.834 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:52.834 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 06:42:53.024 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28590 849
17-03-18 06:42:53.174 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:42:53.214 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:42:53.214 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:42:53.214 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:53.214 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:42:53.214 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:42:53.214 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:53.214 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:53.224 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:53.224 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:42:53.224 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:42:53.394 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:42:53.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:42:53.394 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:53.394 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:53.404 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:42:53.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:42:53.404 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2619884792, 0x0, 391868352) start.
17-03-18 06:42:53.404 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:53.404 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:53.404 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 06:42:53.584 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:42:53.584 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:42:53.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28590 150' command took 2 ms to send, 1418 ms to get response, and 1422 ms overall
17-03-18 06:42:53.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:42:53.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.130068881830187. ------
17-03-18 06:42:53.594 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:53.594 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13643 mm
17-03-18 06:42:53.594 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:42:53.594 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:42:53.594 -07 000000474 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 06:42:53.594 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29803, sync = True, waitForSettling = False)
17-03-18 06:42:53.594 -07 000000424 INF: Z Motor: Moving to -0.136429 mm, started at -0.130069 mm, distance = -6.36 um
17-03-18 06:42:53.594 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:53.604 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:53.604 -07 000000424 INF: FPGA: Xmit ZDACW 29803\n [Z Motor]
17-03-18 06:42:53.604 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 06:42:53.614 -07 000000424 INF: FPGA: 'ZDACW 29803' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:42:53.614 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:53.614 -07 000000502 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:42:53.624 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:42:53.624 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:42:53.624 -07 000000474 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:53.624 -07 000000474 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:42:53.624 -07 000000474 INF: Y Motor: Moving 1346 steps-24
17-03-18 06:42:53.634 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:53.634 -07 000000382 INF: FPGA: Recv ZDACR 29803
17-03-18 06:42:53.644 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:42:53.644 -07 000000424 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 06:42:53.644 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:42:53.804 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2619884792, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 06:42:53.804 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:42:53.804 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:53.804 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:42:53.804 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:42:53.804 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:53.814 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:53.814 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 06:42:53.814 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:42:53.814 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:42:53.824 -07 000000581 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:42:53.824 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:42:54.014 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 06:42:54.014 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:42:54.074 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:54.074 -07 000000487 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:42:54.084 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:54.084 -07 000000474 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:54.084 -07 000000474 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:42:54.084 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.841 mm, average velocity = 2.124 mm/sec
17-03-18 06:42:55.034 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:55.034 -07 000000012 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:42:55.044 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:55.044 -07 000000474 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:55.074 -07 000000474 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:55.074 -07 000000474 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:42:55.074 -07 000000474 INF: Y Motor: Moved to 68.2046 after 1476 ms (table move)
17-03-18 06:42:55.074 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136429 mm (DAC = 29803)
17-03-18 06:42:55.074 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:55.084 -07 000000462 INF: FPGA: Recv ZSGSRD 30529
17-03-18 06:42:55.084 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:42:55.084 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:55.084 -07 000000487 INF: FPGA: Recv ZSGSRD 30526
17-03-18 06:42:55.094 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:55.094 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:55.094 -07 000000382 INF: FPGA: Recv ZSGSRD 30529
17-03-18 06:42:55.104 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:55.104 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:55.104 -07 000000424 INF: FPGA: Recv ZSGSRD 30518
17-03-18 06:42:55.114 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:55.114 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:55.114 -07 000000467 INF: FPGA: Recv ZSGSRD 30528
17-03-18 06:42:55.124 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:55.124 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:55.124 -07 000000487 INF: FPGA: Recv ZSGSRD 30527
17-03-18 06:42:55.134 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:55.134 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:55.134 -07 000000581 INF: FPGA: Recv ZSGSRD 30531
17-03-18 06:42:55.144 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:55.144 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:55.144 -07 000000012 INF: FPGA: Recv ZSGSRD 30537
17-03-18 06:42:55.154 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:55.164 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:55.164 -07 000000467 INF: FPGA: Recv ZSGSRD 30534
17-03-18 06:42:55.174 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:42:55.174 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:55.174 -07 000000502 INF: FPGA: Recv ZSGSRD 30527
17-03-18 06:42:55.184 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:55.184 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:55.184 -07 000000585 INF: FPGA: Recv ZPIEZORD 26319
17-03-18 06:42:55.194 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:55.194 -07 000000579 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.548 V. Piezo Error = -9.3 V.
17-03-18 06:42:55.194 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30529 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30528 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30518 (-135.6 uncal um), Max = 30537 (-135.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:42:55.194 -07 000000579 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30529, posNoise = 8, negNoise = 11
17-03-18 06:42:55.194 -07 000000579 INF: Z Motor: After move to -0.136429, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:55.194 -07 000000579 INF: Z Motor: Settle wait time = 1480 ms, measure time = 114 ms (allowed 150 ms), total time = 1594 ms
17-03-18 06:42:55.194 -07 000000579 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 06:42:55.234 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 06:42:55.234 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:55.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:55.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:55.234 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:55.234 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:55.234 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:55.234 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:55.244 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:55.244 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:55.244 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:55.244 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:55.244 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:42:55.244 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 06:42:55.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:55.294 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:42:55.474 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.011254,
17-03-18 06:42:55.594 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:42:55.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:42:55.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:55.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) start.
17-03-18 06:42:55.634 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:42:55.634 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:55.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:42:55.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:42:55.714 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:55.714 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:42:55.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:42:55.734 -07 000000467 INF: Autofocus start
17-03-18 06:42:55.734 -07 000000467 INF: MeasureProfile start
17-03-18 06:42:55.734 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:55.734 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:55.744 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:55.744 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:55.744 -07 000000467 INF: MeasureProfile done
17-03-18 06:42:55.744 -07 000000467 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:42:55.744 -07 000000467 INF: Autofocus finished
17-03-18 06:42:55.944 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:42:55.944 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:42:55.944 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.136448124486955. ----------
17-03-18 06:42:55.944 -07 000000610 INF: Cycle	152	Tile	11	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:42:55.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28311, sync = True, waitForSettling = True)
17-03-18 06:42:55.954 -07 000000610 INF: Z Motor: Moving to -0.129599 mm, started at -0.136448 mm, distance = 6.85 um
17-03-18 06:42:55.954 -07 000000610 INF: FPGA: Xmit ZDACW 28311\n [Z Motor]
17-03-18 06:42:55.954 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 06:42:55.964 -07 000000610 INF: FPGA: 'ZDACW 28311' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:42:55.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:55.964 -07 000000579 INF: FPGA: Recv ZDACR 28311
17-03-18 06:42:55.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:55.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:42:56.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:56.124 -07 000000502 INF: FPGA: Recv ZSGSRD 29466
17-03-18 06:42:56.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:42:56.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:56.134 -07 000000579 INF: FPGA: Recv ZSGSRD 29463
17-03-18 06:42:56.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:56.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:56.144 -07 000000585 INF: FPGA: Recv ZSGSRD 29463
17-03-18 06:42:56.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:56.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:56.154 -07 000000585 INF: FPGA: Recv ZSGSRD 29463
17-03-18 06:42:56.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:56.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:56.164 -07 000000502 INF: FPGA: Recv ZSGSRD 29463
17-03-18 06:42:56.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:56.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:56.174 -07 000000467 INF: FPGA: Recv ZSGSRD 29465
17-03-18 06:42:56.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:56.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:56.184 -07 000000585 INF: FPGA: Recv ZSGSRD 29466
17-03-18 06:42:56.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:56.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:56.194 -07 000000502 INF: FPGA: Recv ZSGSRD 29456
17-03-18 06:42:56.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:56.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:56.204 -07 000000585 INF: FPGA: Recv ZSGSRD 29466
17-03-18 06:42:56.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:56.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:56.214 -07 000000585 INF: FPGA: Recv ZSGSRD 29465
17-03-18 06:42:56.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:56.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:56.224 -07 000000585 INF: FPGA: Recv ZPIEZORD 24918
17-03-18 06:42:56.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:56.234 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -10.0 V.
17-03-18 06:42:56.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29464 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29464 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29456 (-128.8 uncal um), Max = 29466 (-128.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:42:56.234 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29464, posNoise = 2, negNoise = 8
17-03-18 06:42:56.234 -07 000000610 INF: Z Motor: After move to -0.129599, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:56.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:42:56.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:56.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:56.234 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:56.244 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:56.244 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:42:56.244 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:56.244 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:42:56.244 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:42:56.244 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:42:56.244 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:42:56.244 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:56.244 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:42:56.244 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:56.244 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:42:56.244 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:42:56.244 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:42:56.254 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:42:56.254 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:42:56.254 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:42:56.254 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:42:56.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28487 150\n [Camera]
17-03-18 06:42:56.454 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:42:56.884 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:42:56.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:42:56.924 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:42:56.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:42:56.924 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:56.924 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:56.924 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 06:42:56.924 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:42:56.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:42:56.924 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:56.924 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:56.924 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 06:42:57.114 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28487 849
17-03-18 06:42:57.264 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1000
17-03-18 06:42:57.324 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:42:57.324 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:42:57.324 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:57.324 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:42:57.324 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:42:57.324 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:57.324 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:57.324 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:42:57.324 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:57.334 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:42:57.484 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:42:57.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:42:57.484 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:42:57.484 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:42:57.484 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 06:42:57.484 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:42:57.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:42:57.494 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:42:57.494 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:42:57.494 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:42:57.674 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:42:57.674 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:42:57.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28487 150' command took 2 ms to send, 1419 ms to get response, and 1422 ms overall
17-03-18 06:42:57.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:42:57.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.12960633855598. ------
17-03-18 06:42:57.804 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13613 mm
17-03-18 06:42:57.804 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:42:57.804 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:57.804 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:57.804 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29738, sync = True, waitForSettling = False)
17-03-18 06:42:57.804 -07 000000581 INF: Z Motor: Moving to -0.136132 mm, started at -0.129606 mm, distance = -6.53 um
17-03-18 06:42:57.804 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:42:57.804 -07 000000576 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 06:42:57.814 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:57.814 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:57.814 -07 000000444 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:42:57.824 -07 000000581 INF: FPGA: Xmit ZDACW 29738\n [Z Motor]
17-03-18 06:42:57.824 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:42:57.824 -07 000000576 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:57.824 -07 000000576 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:42:57.824 -07 000000576 INF: Y Motor: Moving 1341 steps-17
17-03-18 06:42:57.824 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:42:57.834 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:42:57.834 -07 000000581 INF: FPGA: 'ZDACW 29738' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:42:57.844 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:42:57.854 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:42:57.854 -07 000000502 INF: FPGA: Recv ZDACR 29738
17-03-18 06:42:57.864 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:42:57.864 -07 000000581 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:42:57.884 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:42:57.884 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:42:57.884 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:57.884 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:42:57.884 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:42:57.884 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:57.884 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:42:57.884 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:42:57.894 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:42:57.894 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:42:58.034 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:42:58.034 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:42:58.214 -07 000000581 INF: FPGA: Recv YMVTILE
17-03-18 06:42:58.214 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:42:58.274 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:58.274 -07 000000585 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:42:58.284 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:58.284 -07 000000576 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:58.284 -07 000000576 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 06:42:58.284 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 06:42:59.234 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:42:59.234 -07 000000629 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:42:59.244 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:59.244 -07 000000576 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:42:59.274 -07 000000576 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:42:59.274 -07 000000576 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:42:59.274 -07 000000576 INF: Y Motor: Moved to 69.0264 after 1465 ms (table move)
17-03-18 06:42:59.274 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136132 mm (DAC = 29738)
17-03-18 06:42:59.274 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:59.274 -07 000000581 INF: FPGA: Recv ZSGSRD 30484
17-03-18 06:42:59.284 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:42:59.284 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:59.284 -07 000000480 INF: FPGA: Recv ZSGSRD 30480
17-03-18 06:42:59.294 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:59.294 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:59.294 -07 000000480 INF: FPGA: Recv ZSGSRD 30475
17-03-18 06:42:59.304 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:59.304 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:59.304 -07 000000480 INF: FPGA: Recv ZSGSRD 30478
17-03-18 06:42:59.314 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:59.314 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:59.314 -07 000000480 INF: FPGA: Recv ZSGSRD 30477
17-03-18 06:42:59.324 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:59.324 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:59.324 -07 000000502 INF: FPGA: Recv ZSGSRD 30477
17-03-18 06:42:59.334 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:59.334 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:59.334 -07 000000629 INF: FPGA: Recv ZSGSRD 30487
17-03-18 06:42:59.344 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:59.344 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:59.344 -07 000000502 INF: FPGA: Recv ZSGSRD 30483
17-03-18 06:42:59.354 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:59.354 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:59.354 -07 000000581 INF: FPGA: Recv ZSGSRD 30483
17-03-18 06:42:59.364 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:59.364 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:42:59.364 -07 000000576 INF: FPGA: Recv ZSGSRD 30481
17-03-18 06:42:59.374 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:59.374 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:42:59.374 -07 000000581 INF: FPGA: Recv ZPIEZORD 26300
17-03-18 06:42:59.384 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:42:59.384 -07 000000467 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.538 V. Piezo Error = -9.2 V.
17-03-18 06:42:59.384 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30480 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30480 (-135.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30475 (-135.3 uncal um), Max = 30487 (-135.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:42:59.384 -07 000000467 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30480, posNoise = 7, negNoise = 5
17-03-18 06:42:59.384 -07 000000467 INF: Z Motor: After move to -0.136132, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:42:59.384 -07 000000467 INF: Z Motor: Settle wait time = 1469 ms, measure time = 104 ms (allowed 150 ms), total time = 1573 ms
17-03-18 06:42:59.384 -07 000000467 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:42:59.434 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:42:59.434 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:42:59.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:42:59.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:42:59.434 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:42:59.434 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:42:59.434 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:42:59.434 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:42:59.434 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:42:59.434 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:42:59.444 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:42:59.444 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:42:59.444 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:42:59.444 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:42:59.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:42:59.494 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:42:59.794 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:42:59.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:42:59.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:42:59.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:42:59.834 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:42:59.834 -07 000000581 INF: FPGA: Recv CAMSNAP
17-03-18 06:42:59.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:42:59.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:42:59.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:42:59.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:42:59.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:42:59.934 -07 000000467 INF: Autofocus start
17-03-18 06:42:59.934 -07 000000467 INF: MeasureProfile start
17-03-18 06:42:59.934 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:42:59.934 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:42:59.944 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:42:59.944 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:42:59.944 -07 000000467 INF: MeasureProfile done
17-03-18 06:42:59.944 -07 000000467 INF: X=27  Z correction [um]=0.1059322
17-03-18 06:42:59.944 -07 000000467 INF: Autofocus finished
17-03-18 06:43:00.144 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:43:00.144 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:43:00.144 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136133338092009. ----------
17-03-18 06:43:00.144 -07 000000610 INF: Cycle	152	Tile	12	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:43:00.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28274, sync = True, waitForSettling = True)
17-03-18 06:43:00.154 -07 000000610 INF: Z Motor: Moving to -0.129430 mm, started at -0.136133 mm, distance = 6.70 um
17-03-18 06:43:00.154 -07 000000610 INF: FPGA: Xmit ZDACW 28274\n [Z Motor]
17-03-18 06:43:00.154 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:43:00.164 -07 000000610 INF: FPGA: 'ZDACW 28274' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:00.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:00.164 -07 000000502 INF: FPGA: Recv ZDACR 28274
17-03-18 06:43:00.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:00.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:43:00.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:00.334 -07 000000474 INF: FPGA: Recv ZSGSRD 29439
17-03-18 06:43:00.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 14 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:43:00.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:00.344 -07 000000474 INF: FPGA: Recv ZSGSRD 29441
17-03-18 06:43:00.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:43:00.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:00.354 -07 000000474 INF: FPGA: Recv ZSGSRD 29437
17-03-18 06:43:00.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:00.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:00.364 -07 000000424 INF: FPGA: Recv ZSGSRD 29435
17-03-18 06:43:00.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:00.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:00.374 -07 000000474 INF: FPGA: Recv ZSGSRD 29435
17-03-18 06:43:00.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:00.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:00.384 -07 000000424 INF: FPGA: Recv ZSGSRD 29438
17-03-18 06:43:00.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:00.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:00.394 -07 000000581 INF: FPGA: Recv ZSGSRD 29437
17-03-18 06:43:00.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:00.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:00.404 -07 000000474 INF: FPGA: Recv ZSGSRD 29437
17-03-18 06:43:00.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:00.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:00.414 -07 000000424 INF: FPGA: Recv ZSGSRD 29440
17-03-18 06:43:00.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:00.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:00.424 -07 000000581 INF: FPGA: Recv ZSGSRD 29443
17-03-18 06:43:00.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:00.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:00.434 -07 000000581 INF: FPGA: Recv ZPIEZORD 24914
17-03-18 06:43:00.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:00.444 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.9 V.
17-03-18 06:43:00.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29438 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29438 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29435 (-128.6 uncal um), Max = 29443 (-128.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:43:00.444 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29438, posNoise = 5, negNoise = 3
17-03-18 06:43:00.444 -07 000000610 INF: Z Motor: After move to -0.129430, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:00.444 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 06:43:00.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:00.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:00.444 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:00.444 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:00.444 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:43:00.444 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:43:00.444 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:43:00.444 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:00.444 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:43:00.444 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:43:00.444 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:43:00.444 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:43:00.454 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:43:00.454 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:43:00.454 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:43:00.454 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:43:00.464 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:43:00.464 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:43:00.464 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:43:00.464 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:43:00.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28451 150\n [Camera]
17-03-18 06:43:00.664 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:43:00.834 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.999021,
17-03-18 06:43:01.134 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:43:01.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:43:01.134 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:01.134 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:43:01.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:43:01.134 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:01.134 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:01.134 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 06:43:01.144 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:01.144 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) start.
17-03-18 06:43:01.324 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28451 849
17-03-18 06:43:01.474 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:43:01.514 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:43:01.514 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:43:01.514 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:01.524 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:43:01.524 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:43:01.524 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:01.524 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:01.524 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:01.524 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:43:01.534 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:43:01.694 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:43:01.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:43:01.694 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:01.694 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:43:01.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:43:01.694 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:01.704 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:01.704 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:43:01.704 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:01.704 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:43:01.884 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:43:01.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:43:01.884 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:43:01.884 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:43:01.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28451 150' command took 2 ms to send, 1419 ms to get response, and 1423 ms overall
17-03-18 06:43:01.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:43:01.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129439309040294. ------
17-03-18 06:43:01.894 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:01.894 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13585 mm
17-03-18 06:43:01.894 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:43:02.014 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:02.014 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:43:02.014 -07 000000581 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 06:43:02.014 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:02.014 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-18 06:43:02.014 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29676, sync = True, waitForSettling = False)
17-03-18 06:43:02.014 -07 000000012 INF: Z Motor: Moving to -0.135848 mm, started at -0.129439 mm, distance = -6.41 um
17-03-18 06:43:02.024 -07 000000012 INF: FPGA: Xmit ZDACW 29676\n [Z Motor]
17-03-18 06:43:02.024 -07 000000462 INF: FPGA: Recv YRDPOS 141367
17-03-18 06:43:02.024 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:43:02.024 -07 000000581 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:02.024 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:43:02.024 -07 000000581 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:43:02.024 -07 000000581 INF: Y Motor: Moving 1353 steps-33
17-03-18 06:43:02.034 -07 000000012 INF: FPGA: 'ZDACW 29676' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:43:02.034 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:02.034 -07 000000382 INF: FPGA: Recv ZDACR 29676
17-03-18 06:43:02.044 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:43:02.044 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:02.044 -07 000000012 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 06:43:02.054 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:43:02.104 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:43:02.104 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:43:02.104 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:02.104 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:43:02.104 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:43:02.104 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:02.104 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:43:02.104 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:02.104 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:43:02.114 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:43:02.244 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:43:02.244 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 223 ms overall
17-03-18 06:43:02.434 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 06:43:02.434 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 405 ms overall
17-03-18 06:43:02.484 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:02.484 -07 000000012 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:43:02.494 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:43:02.494 -07 000000581 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:02.494 -07 000000581 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:43:02.494 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 406 ms, distance = 0.846 mm, average velocity = 2.084 mm/sec
17-03-18 06:43:03.444 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:03.444 -07 000000382 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:43:03.454 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:43:03.454 -07 000000581 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:03.484 -07 000000581 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:43:03.484 -07 000000581 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:43:03.484 -07 000000581 INF: Y Motor: Moved to 69.8628 after 1464 ms (table move)
17-03-18 06:43:03.484 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135848 mm (DAC = 29676)
17-03-18 06:43:03.484 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:03.484 -07 000000576 INF: FPGA: Recv ZSGSRD 30439
17-03-18 06:43:03.494 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:43:03.494 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:03.494 -07 000000585 INF: FPGA: Recv ZSGSRD 30444
17-03-18 06:43:03.504 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:03.504 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:03.504 -07 000000629 INF: FPGA: Recv ZSGSRD 30432
17-03-18 06:43:03.514 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:03.514 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:03.514 -07 000000462 INF: FPGA: Recv ZSGSRD 30438
17-03-18 06:43:03.524 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:03.524 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:03.524 -07 000000576 INF: FPGA: Recv ZSGSRD 30431
17-03-18 06:43:03.534 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:03.534 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:03.534 -07 000000579 INF: FPGA: Recv ZSGSRD 30435
17-03-18 06:43:03.544 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:03.544 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:03.544 -07 000000444 INF: FPGA: Recv ZSGSRD 30441
17-03-18 06:43:03.554 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:03.554 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:03.554 -07 000000462 INF: FPGA: Recv ZSGSRD 30438
17-03-18 06:43:03.564 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:03.564 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:03.564 -07 000000480 INF: FPGA: Recv ZSGSRD 30436
17-03-18 06:43:03.574 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:03.574 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:03.574 -07 000000579 INF: FPGA: Recv ZSGSRD 30437
17-03-18 06:43:03.584 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:03.584 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:03.584 -07 000000629 INF: FPGA: Recv ZPIEZORD 26230
17-03-18 06:43:03.594 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:03.594 -07 000000487 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.528 V. Piezo Error = -9.2 V.
17-03-18 06:43:03.594 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.8 um, Read 10 ADC samples: Avg = 30437 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30438 (-135.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30431 (-135.0 uncal um), Max = 30444 (-135.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:43:03.594 -07 000000487 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30437, posNoise = 7, negNoise = 6
17-03-18 06:43:03.594 -07 000000487 INF: Z Motor: After move to -0.135848, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:03.594 -07 000000487 INF: Z Motor: Settle wait time = 1467 ms, measure time = 104 ms (allowed 150 ms), total time = 1571 ms
17-03-18 06:43:03.594 -07 000000487 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:43:03.644 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1745 ms
17-03-18 06:43:03.644 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:43:03.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:03.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:03.644 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:03.644 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:03.644 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:43:03.644 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:03.644 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:43:03.644 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:43:03.654 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:43:03.654 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:43:03.664 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:43:03.664 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:43:03.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:43:03.714 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:43:04.014 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:43:04.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:43:04.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:43:04.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:43:04.044 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:43:04.054 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-18 06:43:04.054 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:43:04.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 06:43:04.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:04.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:43:04.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 06:43:04.154 -07 000000467 INF: Autofocus start
17-03-18 06:43:04.154 -07 000000467 INF: MeasureProfile start
17-03-18 06:43:04.154 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:04.154 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:04.164 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:43:04.164 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:43:04.174 -07 000000467 INF: MeasureProfile done
17-03-18 06:43:04.174 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:43:04.174 -07 000000467 INF: Autofocus finished
17-03-18 06:43:04.364 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:43:04.364 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 06:43:04.364 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.135857096969913. ----------
17-03-18 06:43:04.364 -07 000000610 INF: Cycle	152	Tile	13	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:43:04.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28200, sync = True, waitForSettling = True)
17-03-18 06:43:04.374 -07 000000610 INF: Z Motor: Moving to -0.129091 mm, started at -0.135857 mm, distance = 6.77 um
17-03-18 06:43:04.374 -07 000000610 INF: FPGA: Xmit ZDACW 28200\n [Z Motor]
17-03-18 06:43:04.374 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:43:04.384 -07 000000610 INF: FPGA: 'ZDACW 28200' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:43:04.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:04.384 -07 000000462 INF: FPGA: Recv ZDACR 28200
17-03-18 06:43:04.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:04.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:43:04.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:04.544 -07 000000585 INF: FPGA: Recv ZSGSRD 29386
17-03-18 06:43:04.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:43:04.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:04.554 -07 000000487 INF: FPGA: Recv ZSGSRD 29389
17-03-18 06:43:04.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:04.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:04.564 -07 000000382 INF: FPGA: Recv ZSGSRD 29378
17-03-18 06:43:04.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:04.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:04.574 -07 000000424 INF: FPGA: Recv ZSGSRD 29385
17-03-18 06:43:04.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:04.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:04.584 -07 000000462 INF: FPGA: Recv ZSGSRD 29389
17-03-18 06:43:04.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:04.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:04.594 -07 000000487 INF: FPGA: Recv ZSGSRD 29389
17-03-18 06:43:04.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:04.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:04.604 -07 000000444 INF: FPGA: Recv ZSGSRD 29381
17-03-18 06:43:04.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:04.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:04.614 -07 000000585 INF: FPGA: Recv ZSGSRD 29379
17-03-18 06:43:04.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:04.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:04.624 -07 000000444 INF: FPGA: Recv ZSGSRD 29390
17-03-18 06:43:04.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:04.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:04.634 -07 000000629 INF: FPGA: Recv ZSGSRD 29381
17-03-18 06:43:04.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:04.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:04.644 -07 000000585 INF: FPGA: Recv ZPIEZORD 24859
17-03-18 06:43:04.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:04.654 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -9.9 V.
17-03-18 06:43:04.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29385 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29386 (-128.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29378 (-128.3 uncal um), Max = 29390 (-128.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:43:04.654 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29385, posNoise = 5, negNoise = 7
17-03-18 06:43:04.654 -07 000000610 INF: Z Motor: After move to -0.129091, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:04.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:43:04.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:04.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:04.654 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:04.654 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:04.654 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:43:04.654 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:04.654 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:43:04.654 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:43:04.654 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:43:04.654 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:43:04.654 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:43:04.654 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:43:04.664 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:43:04.664 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:43:04.664 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:43:04.664 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:43:04.664 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:43:04.664 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:43:04.674 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:43:04.674 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:43:04.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28377 150\n [Camera]
17-03-18 06:43:04.874 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:43:05.334 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:43:05.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:43:05.334 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:05.344 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:43:05.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:43:05.344 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:05.344 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:05.344 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:43:05.344 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:05.344 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 06:43:05.534 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28377 849
17-03-18 06:43:05.674 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:43:05.714 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:43:05.714 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:43:05.714 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:05.714 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:05.714 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:43:05.714 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 06:43:05.714 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:05.724 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:05.724 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:43:05.724 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:43:05.904 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:43:05.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:43:05.904 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:05.904 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:43:05.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:43:05.904 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:05.904 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2619884792, 0x0, 391868352) start.
17-03-18 06:43:05.904 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:05.904 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:05.904 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 06:43:06.094 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:43:06.094 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:43:06.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28377 150' command took 2 ms to send, 1415 ms to get response, and 1422 ms overall
17-03-18 06:43:06.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:43:06.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129098825796781. ------
17-03-18 06:43:06.104 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:06.104 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13540 mm
17-03-18 06:43:06.104 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:43:06.104 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:43:06.104 -07 000000585 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 06:43:06.104 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29577, sync = True, waitForSettling = False)
17-03-18 06:43:06.104 -07 000000629 INF: Z Motor: Moving to -0.135395 mm, started at -0.129099 mm, distance = -6.30 um
17-03-18 06:43:06.104 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:06.114 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:43:06.114 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:06.114 -07 000000467 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:43:06.124 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:43:06.124 -07 000000585 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:06.124 -07 000000585 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:43:06.124 -07 000000585 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:43:06.124 -07 000000629 INF: FPGA: Xmit ZDACW 29577\n [Z Motor]
17-03-18 06:43:06.124 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:43:06.134 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:43:06.134 -07 000000629 INF: FPGA: 'ZDACW 29577' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:43:06.144 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:43:06.154 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:06.154 -07 000000467 INF: FPGA: Recv ZDACR 29577
17-03-18 06:43:06.164 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:43:06.164 -07 000000629 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 06:43:06.194 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.990831,
17-03-18 06:43:06.314 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 06:43:06.314 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:43:06.314 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:06.314 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2619884792, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:43:06.314 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:43:06.314 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:06.314 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:43:06.314 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:43:06.314 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:43:06.324 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:43:06.334 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:43:06.334 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:43:06.514 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 06:43:06.514 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:43:06.574 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:06.574 -07 000000576 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:43:06.584 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:06.584 -07 000000585 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:06.584 -07 000000585 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:43:06.584 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 06:43:06.884 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:43:06.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:43:07.534 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:07.534 -07 000000480 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:43:07.544 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:07.544 -07 000000585 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:07.574 -07 000000585 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:43:07.574 -07 000000585 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:43:07.574 -07 000000585 INF: Y Motor: Moved to 70.6880 after 1467 ms (table move)
17-03-18 06:43:07.574 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135395 mm (DAC = 29577)
17-03-18 06:43:07.574 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:07.584 -07 000000592 INF: FPGA: Recv ZSGSRD 30366
17-03-18 06:43:07.584 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:43:07.584 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:07.584 -07 000000461 INF: FPGA: Recv ZSGSRD 30366
17-03-18 06:43:07.594 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:43:07.594 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:07.594 -07 000000576 INF: FPGA: Recv ZSGSRD 30360
17-03-18 06:43:07.604 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:07.604 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:07.604 -07 000000585 INF: FPGA: Recv ZSGSRD 30362
17-03-18 06:43:07.614 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:07.614 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:07.614 -07 000000467 INF: FPGA: Recv ZSGSRD 30362
17-03-18 06:43:07.624 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:07.624 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:07.624 -07 000000461 INF: FPGA: Recv ZSGSRD 30363
17-03-18 06:43:07.634 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:07.634 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:07.634 -07 000000462 INF: FPGA: Recv ZSGSRD 30368
17-03-18 06:43:07.644 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:07.644 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:07.644 -07 000000576 INF: FPGA: Recv ZSGSRD 30366
17-03-18 06:43:07.654 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:07.654 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:07.654 -07 000000592 INF: FPGA: Recv ZSGSRD 30361
17-03-18 06:43:07.664 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:07.664 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:07.664 -07 000000462 INF: FPGA: Recv ZSGSRD 30362
17-03-18 06:43:07.674 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:07.674 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:07.674 -07 000000576 INF: FPGA: Recv ZPIEZORD 26172
17-03-18 06:43:07.684 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:07.684 -07 000000502 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -9.2 V.
17-03-18 06:43:07.684 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30364 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30362 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30360 (-134.6 uncal um), Max = 30368 (-134.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:43:07.684 -07 000000502 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30364, posNoise = 4, negNoise = 4
17-03-18 06:43:07.684 -07 000000502 INF: Z Motor: After move to -0.135395, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:07.684 -07 000000502 INF: Z Motor: Settle wait time = 1472 ms, measure time = 102 ms (allowed 150 ms), total time = 1574 ms
17-03-18 06:43:07.684 -07 000000502 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:43:07.734 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:43:07.734 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:43:07.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:07.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:07.734 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:07.734 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:07.734 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:43:07.734 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:07.734 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:43:07.734 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:43:07.744 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:43:07.744 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:43:07.744 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:43:07.744 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:43:07.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:43:07.794 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:43:08.094 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:43:08.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:43:08.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:43:08.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) start.
17-03-18 06:43:08.134 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:43:08.134 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:43:08.134 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:43:08.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602972488, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 06:43:08.214 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:08.214 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:43:08.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 06:43:08.234 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:08.234 -07 000000480 INF: Autofocus start
17-03-18 06:43:08.234 -07 000000480 INF: MeasureProfile start
17-03-18 06:43:08.234 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:08.244 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:43:08.244 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:43:08.244 -07 000000480 INF: MeasureProfile done
17-03-18 06:43:08.244 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:43:08.244 -07 000000480 INF: Autofocus finished
17-03-18 06:43:08.444 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:43:08.444 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:43:08.444 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.135388129483565. ----------
17-03-18 06:43:08.454 -07 000000610 INF: Cycle	152	Tile	14	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:43:08.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28101, sync = True, waitForSettling = True)
17-03-18 06:43:08.454 -07 000000610 INF: Z Motor: Moving to -0.128638 mm, started at -0.135388 mm, distance = 6.75 um
17-03-18 06:43:08.454 -07 000000610 INF: FPGA: Xmit ZDACW 28101\n [Z Motor]
17-03-18 06:43:08.454 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:43:08.464 -07 000000610 INF: FPGA: 'ZDACW 28101' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:43:08.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:08.464 -07 000000502 INF: FPGA: Recv ZDACR 28101
17-03-18 06:43:08.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:08.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:43:08.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:08.624 -07 000000629 INF: FPGA: Recv ZSGSRD 29314
17-03-18 06:43:08.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:43:08.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:08.634 -07 000000502 INF: FPGA: Recv ZSGSRD 29315
17-03-18 06:43:08.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:08.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:08.644 -07 000000424 INF: FPGA: Recv ZSGSRD 29311
17-03-18 06:43:08.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:08.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:08.654 -07 000000502 INF: FPGA: Recv ZSGSRD 29313
17-03-18 06:43:08.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:08.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:08.664 -07 000000576 INF: FPGA: Recv ZSGSRD 29317
17-03-18 06:43:08.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:08.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:08.674 -07 000000629 INF: FPGA: Recv ZSGSRD 29319
17-03-18 06:43:08.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:08.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:08.684 -07 000000629 INF: FPGA: Recv ZSGSRD 29313
17-03-18 06:43:08.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:08.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:08.694 -07 000000629 INF: FPGA: Recv ZSGSRD 29312
17-03-18 06:43:08.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:08.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:08.704 -07 000000467 INF: FPGA: Recv ZSGSRD 29315
17-03-18 06:43:08.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:08.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:08.714 -07 000000467 INF: FPGA: Recv ZSGSRD 29315
17-03-18 06:43:08.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:08.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:08.724 -07 000000629 INF: FPGA: Recv ZPIEZORD 24783
17-03-18 06:43:08.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:08.734 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -9.9 V.
17-03-18 06:43:08.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29314 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29314 (-127.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29311 (-127.8 uncal um), Max = 29319 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:43:08.734 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29314, posNoise = 5, negNoise = 3
17-03-18 06:43:08.734 -07 000000610 INF: Z Motor: After move to -0.128638, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:08.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:43:08.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:08.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:08.734 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:08.734 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:08.734 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:43:08.734 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:08.734 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:43:08.734 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:43:08.734 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:43:08.734 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:43:08.734 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:43:08.734 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:43:08.744 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:43:08.744 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:43:08.744 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:43:08.744 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:43:08.754 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:43:08.754 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:43:08.754 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:43:08.754 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:43:08.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28278 150\n [Camera]
17-03-18 06:43:08.954 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:43:09.414 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:43:09.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:43:09.414 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:09.414 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:09.414 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 06:43:09.424 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:43:09.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:43:09.424 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:09.424 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:09.424 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 06:43:09.614 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28278 849
17-03-18 06:43:09.754 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:43:09.824 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:43:09.824 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:43:09.824 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:09.824 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:43:09.824 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:43:09.824 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:09.824 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:43:09.824 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:43:09.824 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:09.834 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:43:09.984 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:43:09.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:43:09.984 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:09.984 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:09.984 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 06:43:09.984 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:43:09.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:43:09.984 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:09.984 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:09.984 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:43:10.174 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:43:10.174 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:43:10.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28278 150' command took 2 ms to send, 1415 ms to get response, and 1421 ms overall
17-03-18 06:43:10.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:43:10.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128642706734716. ------
17-03-18 06:43:10.184 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:10.374 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 06:43:10.374 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:43:10.374 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:10.384 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:43:10.384 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:43:10.384 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:10.384 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:10.384 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:43:10.384 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:43:10.384 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:43:10.524 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:10.524 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 332 ms to get response, and 342 ms overall
17-03-18 06:43:10.524 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:43:10.524 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13528 mm
17-03-18 06:43:10.524 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:43:10.524 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:43:10.524 -07 000000629 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 06:43:10.534 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:11.314 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29552, sync = True, waitForSettling = False)
17-03-18 06:43:11.314 -07 000000581 INF: Z Motor: Moving to -0.135280 mm, started at -0.128643 mm, distance = -6.64 um
17-03-18 06:43:11.314 -07 000000581 INF: FPGA: Xmit ZDACW 29552\n [Z Motor]
17-03-18 06:43:12.314 -07 000000579 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:43:12.314 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:43:12.314 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:43:12.314 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:43:12.314 -07 000000581 INF: FPGA: 'ZDACW 29552' command took 0 ms to send, 990 ms to get response, and 998 ms overall
17-03-18 06:43:12.314 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:12.314 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1770 ms to get response, and 1784 ms overall
17-03-18 06:43:12.314 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1780 ms to get response, and 1787 ms overall
17-03-18 06:43:12.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:43:12.314 -07 000000629 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:12.314 -07 000000629 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:43:12.314 -07 000000629 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:43:12.314 -07 000000502 INF: FPGA: Recv ZDACR 29552
17-03-18 06:43:12.324 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:43:12.324 -07 000000581 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-18 06:43:12.324 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:43:12.624 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.005817,
17-03-18 06:43:12.694 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 06:43:12.694 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 06:43:12.754 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:12.754 -07 000000474 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:43:12.764 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:43:12.764 -07 000000629 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:12.764 -07 000000629 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:43:12.764 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-18 06:43:13.714 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:13.714 -07 000000012 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:43:13.724 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:43:13.724 -07 000000629 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:13.754 -07 000000629 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:43:13.754 -07 000000629 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:43:13.754 -07 000000629 INF: Y Motor: Moved to 71.5181 after 3229 ms (table move)
17-03-18 06:43:13.754 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135280 mm (DAC = 29552)
17-03-18 06:43:13.754 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:13.764 -07 000000502 INF: FPGA: Recv ZSGSRD 30344
17-03-18 06:43:13.764 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:43:13.764 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:13.764 -07 000000430 INF: FPGA: Recv ZSGSRD 30342
17-03-18 06:43:13.774 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:43:13.774 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:13.774 -07 000000581 INF: FPGA: Recv ZSGSRD 30342
17-03-18 06:43:13.784 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:13.784 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:13.784 -07 000000629 INF: FPGA: Recv ZSGSRD 30343
17-03-18 06:43:13.794 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:13.794 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:13.794 -07 000000502 INF: FPGA: Recv ZSGSRD 30348
17-03-18 06:43:13.804 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:13.804 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:13.804 -07 000000629 INF: FPGA: Recv ZSGSRD 30343
17-03-18 06:43:13.814 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:13.814 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:13.814 -07 000000487 INF: FPGA: Recv ZSGSRD 30343
17-03-18 06:43:13.824 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:13.824 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:13.824 -07 000000579 INF: FPGA: Recv ZSGSRD 30346
17-03-18 06:43:13.834 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:13.834 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:13.834 -07 000000474 INF: FPGA: Recv ZSGSRD 30346
17-03-18 06:43:13.844 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:13.844 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:13.844 -07 000000430 INF: FPGA: Recv ZSGSRD 30353
17-03-18 06:43:13.854 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:13.854 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:13.854 -07 000000487 INF: FPGA: Recv ZPIEZORD 26146
17-03-18 06:43:13.864 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:13.864 -07 000000467 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.509 V. Piezo Error = -9.2 V.
17-03-18 06:43:13.864 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30345 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30344 (-134.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30342 (-134.5 uncal um), Max = 30353 (-134.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:43:13.864 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30345, posNoise = 8, negNoise = 3
17-03-18 06:43:13.864 -07 000000467 INF: Z Motor: After move to -0.135280, error = 0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:13.864 -07 000000467 INF: Z Motor: Settle wait time = 2446 ms, measure time = 102 ms (allowed 150 ms), total time = 2548 ms
17-03-18 06:43:13.864 -07 000000467 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:43:13.914 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3386 ms
17-03-18 06:43:13.914 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:43:13.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:13.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:13.914 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:13.914 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:13.914 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:43:13.914 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:13.914 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:43:13.914 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:43:13.924 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:43:13.924 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:43:13.924 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:43:13.924 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:43:13.934 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:43:13.974 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:43:14.274 -07 000000487 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:43:14.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:43:14.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:43:14.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:43:14.314 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:43:14.314 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 06:43:14.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:43:14.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:43:14.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:14.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:43:14.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 06:43:14.514 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:14.514 -07 000000629 INF: Autofocus start
17-03-18 06:43:14.514 -07 000000629 INF: MeasureProfile start
17-03-18 06:43:14.514 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:14.524 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:43:14.524 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:43:14.524 -07 000000629 INF: MeasureProfile done
17-03-18 06:43:14.524 -07 000000629 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:43:14.524 -07 000000629 INF: Autofocus finished
17-03-18 06:43:14.724 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:43:14.724 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:43:14.724 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.135266069452871. ----------
17-03-18 06:43:14.724 -07 000000610 INF: Cycle	152	Tile	15	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:43:14.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28076, sync = True, waitForSettling = True)
17-03-18 06:43:14.734 -07 000000610 INF: Z Motor: Moving to -0.128524 mm, started at -0.135266 mm, distance = 6.74 um
17-03-18 06:43:14.734 -07 000000610 INF: FPGA: Xmit ZDACW 28076\n [Z Motor]
17-03-18 06:43:14.734 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 06:43:14.744 -07 000000610 INF: FPGA: 'ZDACW 28076' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:43:14.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:14.744 -07 000000502 INF: FPGA: Recv ZDACR 28076
17-03-18 06:43:14.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:14.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:43:14.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:14.904 -07 000000487 INF: FPGA: Recv ZSGSRD 29297
17-03-18 06:43:14.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:43:14.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:14.914 -07 000000467 INF: FPGA: Recv ZSGSRD 29290
17-03-18 06:43:14.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:14.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:14.924 -07 000000430 INF: FPGA: Recv ZSGSRD 29302
17-03-18 06:43:14.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:14.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:14.934 -07 000000579 INF: FPGA: Recv ZSGSRD 29293
17-03-18 06:43:14.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:14.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:14.944 -07 000000487 INF: FPGA: Recv ZSGSRD 29299
17-03-18 06:43:14.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:14.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:14.954 -07 000000579 INF: FPGA: Recv ZSGSRD 29303
17-03-18 06:43:14.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:14.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:14.964 -07 000000012 INF: FPGA: Recv ZSGSRD 29291
17-03-18 06:43:14.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:14.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:14.974 -07 000000474 INF: FPGA: Recv ZSGSRD 29298
17-03-18 06:43:14.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:14.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:14.984 -07 000000487 INF: FPGA: Recv ZSGSRD 29291
17-03-18 06:43:14.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:14.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:14.994 -07 000000502 INF: FPGA: Recv ZSGSRD 29297
17-03-18 06:43:15.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:15.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:15.004 -07 000000487 INF: FPGA: Recv ZPIEZORD 24737
17-03-18 06:43:15.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:15.014 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -10.0 V.
17-03-18 06:43:15.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29296 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29297 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29290 (-127.7 uncal um), Max = 29303 (-127.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:43:15.014 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29296, posNoise = 7, negNoise = 6
17-03-18 06:43:15.014 -07 000000610 INF: Z Motor: After move to -0.128524, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:15.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:43:15.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:15.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:15.014 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:15.014 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:15.014 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:43:15.014 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:15.014 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:43:15.014 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:43:15.014 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:43:15.014 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:43:15.014 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:43:15.014 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:43:15.024 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:43:15.024 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:43:15.024 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:43:15.024 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:43:15.034 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:43:15.034 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:43:15.034 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:43:15.034 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:43:15.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28253 150\n [Camera]
17-03-18 06:43:15.234 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:43:15.704 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:43:15.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:43:15.704 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:15.704 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:43:15.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:43:15.704 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:15.704 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:15.704 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 06:43:15.714 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:15.714 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) start.
17-03-18 06:43:15.894 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28253 849
17-03-18 06:43:16.044 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:43:16.104 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:43:16.104 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:43:16.104 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:16.104 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:16.104 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:43:16.114 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2619884792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:43:16.114 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:43:16.114 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:16.114 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:16.124 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:43:16.264 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:43:16.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:43:16.274 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:16.274 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:43:16.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:43:16.274 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:16.274 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:16.274 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:43:16.394 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:16.394 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:43:16.464 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:43:16.464 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:43:16.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28253 150' command took 2 ms to send, 1411 ms to get response, and 1421 ms overall
17-03-18 06:43:16.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:43:16.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.128527070916164. ------
17-03-18 06:43:16.464 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:16.464 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13495 mm
17-03-18 06:43:16.464 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:43:16.654 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:43:16.654 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:43:16.654 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:16.654 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:16.664 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:43:16.674 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:43:16.674 -07 000000502 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 06:43:16.674 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:16.774 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:43:16.774 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:43:16.774 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:16.774 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:43:16.774 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-18 06:43:16.784 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:16.784 -07 000000382 INF: FPGA: Recv YRDPOS 146470
17-03-18 06:43:16.784 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 317 ms to get response, and 321 ms overall
17-03-18 06:43:16.784 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 107 ms to get response, and 113 ms overall
17-03-18 06:43:16.784 -07 000000502 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:16.784 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:43:16.784 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29481, sync = True, waitForSettling = False)
17-03-18 06:43:16.784 -07 000000382 INF: Z Motor: Moving to -0.134955 mm, started at -0.128527 mm, distance = -6.43 um
17-03-18 06:43:16.794 -07 000000382 INF: FPGA: Xmit ZDACW 29481\n [Z Motor]
17-03-18 06:43:16.794 -07 000000502 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:43:16.794 -07 000000502 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:43:16.804 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:43:17.314 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:43:17.314 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:43:17.314 -07 000000382 INF: FPGA: 'ZDACW 29481' command took 0 ms to send, 510 ms to get response, and 521 ms overall
17-03-18 06:43:17.314 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:43:17.314 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 06:43:17.314 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 500 ms to get response, and 516 ms overall
17-03-18 06:43:17.314 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:17.314 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 520 ms to get response, and 523 ms overall
17-03-18 06:43:17.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:43:17.314 -07 000000474 INF: FPGA: Recv ZDACR 29481
17-03-18 06:43:17.324 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:43:17.324 -07 000000382 INF: Z Motor: MoveAbsStepped took 530 ms (did NOT wait for settling yet))
17-03-18 06:43:17.364 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:17.364 -07 000000382 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:43:17.374 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:43:17.374 -07 000000502 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:17.374 -07 000000502 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:43:17.374 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 516 ms, distance = 0.845 mm, average velocity = 1.637 mm/sec
17-03-18 06:43:17.984 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.003063,
17-03-18 06:43:18.324 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:18.324 -07 000000474 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:43:18.334 -07 000000502 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:18.334 -07 000000502 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:18.364 -07 000000502 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:43:18.364 -07 000000502 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:43:18.364 -07 000000502 INF: Y Motor: Moved to 72.3486 after 1690 ms (table move)
17-03-18 06:43:18.364 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134955 mm (DAC = 29481)
17-03-18 06:43:18.364 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:18.374 -07 000000480 INF: FPGA: Recv ZSGSRD 30296
17-03-18 06:43:18.374 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:43:18.374 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:18.374 -07 000000444 INF: FPGA: Recv ZSGSRD 30300
17-03-18 06:43:18.384 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:18.384 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:18.384 -07 000000480 INF: FPGA: Recv ZSGSRD 30292
17-03-18 06:43:18.394 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:18.394 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:18.394 -07 000000480 INF: FPGA: Recv ZSGSRD 30299
17-03-18 06:43:18.404 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:18.404 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:18.404 -07 000000461 INF: FPGA: Recv ZSGSRD 30300
17-03-18 06:43:18.414 -07 000000579 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:18.414 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:18.414 -07 000000461 INF: FPGA: Recv ZSGSRD 30293
17-03-18 06:43:18.424 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:18.424 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:18.424 -07 000000424 INF: FPGA: Recv ZSGSRD 30299
17-03-18 06:43:18.434 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:18.434 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:18.434 -07 000000444 INF: FPGA: Recv ZSGSRD 30304
17-03-18 06:43:18.444 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:18.444 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:18.444 -07 000000461 INF: FPGA: Recv ZSGSRD 30297
17-03-18 06:43:18.454 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:18.454 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:18.454 -07 000000480 INF: FPGA: Recv ZSGSRD 30296
17-03-18 06:43:18.464 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:18.464 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:18.464 -07 000000502 INF: FPGA: Recv ZPIEZORD 26067
17-03-18 06:43:18.474 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:18.474 -07 000000579 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.499 V. Piezo Error = -9.3 V.
17-03-18 06:43:18.474 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30298 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30298 (-134.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30292 (-134.1 uncal um), Max = 30304 (-134.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:43:18.474 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30298, posNoise = 6, negNoise = 6
17-03-18 06:43:18.474 -07 000000579 INF: Z Motor: After move to -0.134955, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:18.474 -07 000000579 INF: Z Motor: Settle wait time = 1577 ms, measure time = 104 ms (allowed 150 ms), total time = 1681 ms
17-03-18 06:43:18.474 -07 000000579 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:43:18.524 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2053 ms
17-03-18 06:43:18.524 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:43:18.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:18.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:18.524 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:18.524 -07 000000592 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:18.524 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:43:18.524 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:18.524 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:43:18.524 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:43:18.534 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:43:18.534 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:43:18.544 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:43:18.544 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 06:43:18.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:43:18.594 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:43:18.894 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:43:18.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:43:18.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:43:18.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-18 06:43:18.934 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:43:18.934 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 06:43:18.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 385 ms to get response, and 387 ms overall
17-03-18 06:43:19.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:43:19.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:19.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:43:19.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:43:19.034 -07 000000462 INF: Autofocus start
17-03-18 06:43:19.034 -07 000000462 INF: MeasureProfile start
17-03-18 06:43:19.034 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:19.034 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:19.044 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:43:19.044 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:43:19.044 -07 000000462 INF: MeasureProfile done
17-03-18 06:43:19.044 -07 000000462 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:43:19.044 -07 000000462 INF: Autofocus finished
17-03-18 06:43:19.244 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:43:19.244 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:43:19.244 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.134964131482208. ----------
17-03-18 06:43:19.244 -07 000000610 INF: Cycle	152	Tile	16	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:43:19.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27976, sync = True, waitForSettling = True)
17-03-18 06:43:19.254 -07 000000610 INF: Z Motor: Moving to -0.128066 mm, started at -0.134964 mm, distance = 6.90 um
17-03-18 06:43:19.254 -07 000000610 INF: FPGA: Xmit ZDACW 27976\n [Z Motor]
17-03-18 06:43:19.254 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:43:19.264 -07 000000610 INF: FPGA: 'ZDACW 27976' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:43:19.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:19.264 -07 000000444 INF: FPGA: Recv ZDACR 27976
17-03-18 06:43:19.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:19.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:43:19.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:19.424 -07 000000462 INF: FPGA: Recv ZSGSRD 29229
17-03-18 06:43:19.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:43:19.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:19.434 -07 000000592 INF: FPGA: Recv ZSGSRD 29219
17-03-18 06:43:19.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:19.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:19.444 -07 000000480 INF: FPGA: Recv ZSGSRD 29220
17-03-18 06:43:19.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:19.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:19.454 -07 000000585 INF: FPGA: Recv ZSGSRD 29228
17-03-18 06:43:19.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:19.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:19.464 -07 000000444 INF: FPGA: Recv ZSGSRD 29223
17-03-18 06:43:19.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:19.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:19.474 -07 000000592 INF: FPGA: Recv ZSGSRD 29222
17-03-18 06:43:19.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:19.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:19.484 -07 000000611 INF: FPGA: Recv ZSGSRD 29227
17-03-18 06:43:19.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:19.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:19.494 -07 000000467 INF: FPGA: Recv ZSGSRD 29223
17-03-18 06:43:19.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:19.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:19.504 -07 000000474 INF: FPGA: Recv ZSGSRD 29233
17-03-18 06:43:19.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:19.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:19.514 -07 000000382 INF: FPGA: Recv ZSGSRD 29224
17-03-18 06:43:19.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:19.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:19.524 -07 000000611 INF: FPGA: Recv ZPIEZORD 24647
17-03-18 06:43:19.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:19.534 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -10.0 V.
17-03-18 06:43:19.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29225 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29224 (-127.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29219 (-127.3 uncal um), Max = 29233 (-127.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:43:19.534 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29225, posNoise = 8, negNoise = 6
17-03-18 06:43:19.534 -07 000000610 INF: Z Motor: After move to -0.128066, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:19.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:43:19.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:19.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:19.534 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:19.534 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:43:19.534 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:43:19.534 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:19.534 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:43:19.534 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:19.534 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:43:19.534 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:43:19.534 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:43:19.534 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:43:19.544 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:43:19.544 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:43:19.544 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:43:19.544 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:43:19.554 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:43:19.554 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:43:19.554 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:43:19.554 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:43:19.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28152 150\n [Camera]
17-03-18 06:43:19.754 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:43:20.214 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:43:20.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:43:20.214 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:20.214 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:20.214 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2619884792, 0x0, 391868352) start.
17-03-18 06:43:20.224 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:43:20.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:43:20.224 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:20.224 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:20.224 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 06:43:20.414 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28152 849
17-03-18 06:43:20.564 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:43:20.594 -07 000000592 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:43:20.594 -07 000000592 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:43:20.594 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:20.604 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:20.604 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2619884792, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 06:43:20.604 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:43:20.604 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:20.614 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:20.614 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:43:20.614 -07 000000592 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:43:20.784 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:43:20.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:43:20.784 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:20.784 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:43:20.784 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:20.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:43:20.784 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 06:43:20.784 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:20.784 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:20.784 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:43:20.974 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:43:20.974 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:43:20.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28152 150' command took 2 ms to send, 1416 ms to get response, and 1422 ms overall
17-03-18 06:43:20.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:43:20.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.128070951854099. ------
17-03-18 06:43:20.984 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:20.984 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13455 mm
17-03-18 06:43:20.984 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:43:21.194 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 06:43:21.194 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:43:21.194 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:21.194 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 06:43:21.194 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:43:21.194 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:21.194 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:43:21.204 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:43:21.204 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:43:21.204 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 06:43:21.214 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:43:21.214 -07 000000480 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 06:43:21.214 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:21.214 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:21.214 -07 000000444 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:43:21.214 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 234 ms overall
17-03-18 06:43:21.214 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29392, sync = True, waitForSettling = False)
17-03-18 06:43:21.214 -07 000000444 INF: Z Motor: Moving to -0.134548 mm, started at -0.128071 mm, distance = -6.48 um
17-03-18 06:43:21.224 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:43:21.224 -07 000000480 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:21.224 -07 000000444 INF: FPGA: Xmit ZDACW 29392\n [Z Motor]
17-03-18 06:43:21.224 -07 000000480 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:43:21.224 -07 000000480 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:43:21.234 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:43:21.244 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:43:21.814 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:43:21.814 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:43:21.814 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 06:43:21.814 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 561 ms to get response, and 585 ms overall
17-03-18 06:43:21.814 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 570 ms to get response, and 593 ms overall
17-03-18 06:43:21.814 -07 000000444 INF: FPGA: 'ZDACW 29392' command took 0 ms to send, 580 ms to get response, and 592 ms overall
17-03-18 06:43:21.814 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:21.814 -07 000000424 INF: FPGA: Recv ZDACR 29392
17-03-18 06:43:21.824 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:43:21.824 -07 000000444 INF: Z Motor: MoveAbsStepped took 601 ms (did NOT wait for settling yet))
17-03-18 06:43:21.864 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:21.874 -07 000000424 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:43:21.874 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:43:21.874 -07 000000480 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:21.874 -07 000000480 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 06:43:21.874 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 585 ms, distance = 0.844 mm, average velocity = 1.443 mm/sec
17-03-18 06:43:21.884 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:43:21.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:43:22.824 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:22.824 -07 000000430 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:43:22.834 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:43:22.834 -07 000000480 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:22.864 -07 000000480 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:43:22.864 -07 000000480 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:43:22.864 -07 000000480 INF: Y Motor: Moved to 73.1753 after 1652 ms (table move)
17-03-18 06:43:22.864 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134548 mm (DAC = 29392)
17-03-18 06:43:22.864 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:22.874 -07 000000480 INF: FPGA: Recv ZSGSRD 30235
17-03-18 06:43:22.884 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:43:22.884 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:22.884 -07 000000480 INF: FPGA: Recv ZSGSRD 30238
17-03-18 06:43:22.894 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:22.894 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:22.894 -07 000000424 INF: FPGA: Recv ZSGSRD 30226
17-03-18 06:43:22.904 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:22.904 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:22.904 -07 000000424 INF: FPGA: Recv ZSGSRD 30228
17-03-18 06:43:22.914 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:22.914 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:22.914 -07 000000424 INF: FPGA: Recv ZSGSRD 30237
17-03-18 06:43:22.924 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:22.924 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:22.924 -07 000000444 INF: FPGA: Recv ZSGSRD 30235
17-03-18 06:43:22.934 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:22.934 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:22.934 -07 000000430 INF: FPGA: Recv ZSGSRD 30240
17-03-18 06:43:22.944 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:22.944 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:22.944 -07 000000424 INF: FPGA: Recv ZSGSRD 30230
17-03-18 06:43:22.954 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:22.954 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:22.954 -07 000000444 INF: FPGA: Recv ZSGSRD 30232
17-03-18 06:43:22.964 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:22.964 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:22.964 -07 000000424 INF: FPGA: Recv ZSGSRD 30236
17-03-18 06:43:22.974 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:22.974 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:22.974 -07 000000480 INF: FPGA: Recv ZPIEZORD 26007
17-03-18 06:43:22.984 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:22.984 -07 000000592 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.485 V. Piezo Error = -9.3 V.
17-03-18 06:43:22.984 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30234 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30235 (-133.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30226 (-133.7 uncal um), Max = 30240 (-133.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:43:22.984 -07 000000592 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30234, posNoise = 6, negNoise = 8
17-03-18 06:43:22.984 -07 000000592 INF: Z Motor: After move to -0.134548, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:22.984 -07 000000592 INF: Z Motor: Settle wait time = 1651 ms, measure time = 111 ms (allowed 150 ms), total time = 1762 ms
17-03-18 06:43:22.984 -07 000000592 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:43:23.024 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2036 ms
17-03-18 06:43:23.024 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:43:23.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:23.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:23.024 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:23.024 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:23.024 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:43:23.024 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:23.024 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:43:23.024 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:43:23.034 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:43:23.034 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:43:23.034 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:43:23.034 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:43:23.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:43:23.084 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:43:23.354 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 4.007176,
17-03-18 06:43:23.384 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:43:23.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:43:23.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:43:23.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 06:43:23.424 -07 000000592 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:43:23.424 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 06:43:23.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:43:23.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:43:23.504 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:23.504 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:43:23.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:43:23.524 -07 000000424 INF: Autofocus start
17-03-18 06:43:23.524 -07 000000424 INF: MeasureProfile start
17-03-18 06:43:23.524 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:23.524 -07 000000581 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:23.534 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:43:23.534 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:43:23.534 -07 000000424 INF: MeasureProfile done
17-03-18 06:43:23.534 -07 000000424 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:43:23.534 -07 000000424 INF: Autofocus finished
17-03-18 06:43:23.734 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:43:23.734 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 06:43:23.734 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134552981905136. ----------
17-03-18 06:43:23.734 -07 000000610 INF: Cycle	152	Tile	17	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:43:23.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27886, sync = True, waitForSettling = True)
17-03-18 06:43:23.744 -07 000000610 INF: Z Motor: Moving to -0.127654 mm, started at -0.134553 mm, distance = 6.90 um
17-03-18 06:43:23.744 -07 000000610 INF: FPGA: Xmit ZDACW 27886\n [Z Motor]
17-03-18 06:43:23.744 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 06:43:23.754 -07 000000610 INF: FPGA: 'ZDACW 27886' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:43:23.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:23.754 -07 000000444 INF: FPGA: Recv ZDACR 27886
17-03-18 06:43:23.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:23.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:43:23.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:23.914 -07 000000444 INF: FPGA: Recv ZSGSRD 29163
17-03-18 06:43:23.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:23.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:23.924 -07 000000424 INF: FPGA: Recv ZSGSRD 29160
17-03-18 06:43:23.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:23.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:23.934 -07 000000581 INF: FPGA: Recv ZSGSRD 29166
17-03-18 06:43:23.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:23.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:23.944 -07 000000629 INF: FPGA: Recv ZSGSRD 29159
17-03-18 06:43:23.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:23.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:23.954 -07 000000444 INF: FPGA: Recv ZSGSRD 29159
17-03-18 06:43:23.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:23.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:23.964 -07 000000424 INF: FPGA: Recv ZSGSRD 29158
17-03-18 06:43:23.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:23.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:23.974 -07 000000430 INF: FPGA: Recv ZSGSRD 29165
17-03-18 06:43:23.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:23.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:23.984 -07 000000592 INF: FPGA: Recv ZSGSRD 29161
17-03-18 06:43:23.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:23.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:23.994 -07 000000424 INF: FPGA: Recv ZSGSRD 29161
17-03-18 06:43:24.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:24.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:24.004 -07 000000487 INF: FPGA: Recv ZSGSRD 29165
17-03-18 06:43:24.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:24.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:24.014 -07 000000430 INF: FPGA: Recv ZPIEZORD 24626
17-03-18 06:43:24.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:24.024 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.255 V. Piezo Error = -9.9 V.
17-03-18 06:43:24.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29162 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29161 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29158 (-126.9 uncal um), Max = 29166 (-126.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:43:24.024 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29162, posNoise = 4, negNoise = 4
17-03-18 06:43:24.024 -07 000000610 INF: Z Motor: After move to -0.127654, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:24.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:43:24.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:24.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:24.024 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:24.024 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:43:24.024 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:43:24.024 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:43:24.024 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:24.024 -07 000000592 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:24.024 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:43:24.024 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:43:24.024 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:43:24.024 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:43:24.024 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:43:24.034 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:43:24.034 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:43:24.034 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:43:24.044 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:43:24.044 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:43:24.044 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:43:24.044 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:43:24.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 28063 150\n [Camera]
17-03-18 06:43:24.244 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:43:24.704 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:43:24.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:43:24.714 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:24.714 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:24.714 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:43:24.714 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:43:24.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:43:24.714 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:24.714 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:24.714 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:43:24.904 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28063 849
17-03-18 06:43:25.054 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:43:25.114 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:43:25.114 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:43:25.114 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:25.114 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:43:25.114 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:43:25.114 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:25.114 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:25.114 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:43:25.114 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:25.124 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:43:25.274 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:43:25.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:43:25.274 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:25.274 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:25.274 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:43:25.274 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:43:25.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:43:25.274 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:25.274 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:25.274 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:43:25.464 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:43:25.464 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:43:25.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 28063 150' command took 2 ms to send, 1419 ms to get response, and 1423 ms overall
17-03-18 06:43:25.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:43:25.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.127666226489168. ------
17-03-18 06:43:25.474 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13369 mm
17-03-18 06:43:25.474 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:43:25.474 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:25.474 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:43:25.474 -07 000000462 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 06:43:25.474 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 29204, sync = True, waitForSettling = False)
17-03-18 06:43:25.474 -07 000000430 INF: Z Motor: Moving to -0.133687 mm, started at -0.127666 mm, distance = -6.02 um
17-03-18 06:43:25.474 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:25.484 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:43:25.484 -07 000000430 INF: FPGA: Xmit ZDACW 29204\n [Z Motor]
17-03-18 06:43:25.484 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 06:43:25.494 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:25.494 -07 000000430 INF: FPGA: 'ZDACW 29204' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:43:25.494 -07 000000467 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:43:25.504 -07 000000592 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:43:25.504 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:43:25.504 -07 000000462 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:25.504 -07 000000462 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:43:25.504 -07 000000462 INF: Y Motor: Moving 1356 steps-35
17-03-18 06:43:25.514 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:25.514 -07 000000611 INF: FPGA: Recv ZDACR 29204
17-03-18 06:43:25.524 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:43:25.524 -07 000000430 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 06:43:25.524 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:43:25.674 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:43:25.674 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:43:25.674 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:25.674 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:43:25.674 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:43:25.674 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:25.674 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:43:25.684 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:43:25.684 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:25.684 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:43:25.704 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:43:25.704 -07 000000592 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:43:25.894 -07 000000592 INF: FPGA: Recv YMVTILE
17-03-18 06:43:25.894 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:43:25.944 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:25.944 -07 000000585 INF: FPGA: Recv YRDPOS 151568
17-03-18 06:43:25.954 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:43:25.954 -07 000000462 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:25.954 -07 000000462 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:43:25.954 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.134 mm/sec
17-03-18 06:43:26.884 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:43:26.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:43:26.904 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:26.904 -07 000000424 INF: FPGA: Recv YRDPOS 151568
17-03-18 06:43:26.914 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:43:26.914 -07 000000462 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:26.934 -07 000000462 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:43:26.934 -07 000000462 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:43:26.934 -07 000000462 INF: Y Motor: Moved to 74.0078 after 1460 ms (table move)
17-03-18 06:43:26.944 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133687 mm (DAC = 29204)
17-03-18 06:43:26.944 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:26.944 -07 000000585 INF: FPGA: Recv ZSGSRD 30107
17-03-18 06:43:26.954 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:26.954 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:26.954 -07 000000585 INF: FPGA: Recv ZSGSRD 30103
17-03-18 06:43:26.964 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:26.964 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:26.964 -07 000000592 INF: FPGA: Recv ZSGSRD 30095
17-03-18 06:43:26.974 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:26.974 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:26.974 -07 000000462 INF: FPGA: Recv ZSGSRD 30101
17-03-18 06:43:26.984 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:26.984 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:26.984 -07 000000585 INF: FPGA: Recv ZSGSRD 30095
17-03-18 06:43:26.994 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:26.994 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:26.994 -07 000000592 INF: FPGA: Recv ZSGSRD 30095
17-03-18 06:43:27.004 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:27.004 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:27.004 -07 000000424 INF: FPGA: Recv ZSGSRD 30107
17-03-18 06:43:27.014 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:27.014 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:27.014 -07 000000592 INF: FPGA: Recv ZSGSRD 30103
17-03-18 06:43:27.024 -07 000000012 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:27.024 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:27.024 -07 000000585 INF: FPGA: Recv ZSGSRD 30104
17-03-18 06:43:27.034 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:27.034 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:27.034 -07 000000592 INF: FPGA: Recv ZSGSRD 30105
17-03-18 06:43:27.044 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:27.044 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:27.044 -07 000000424 INF: FPGA: Recv ZPIEZORD 25853
17-03-18 06:43:27.054 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:27.054 -07 000000012 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.456 V. Piezo Error = -9.3 V.
17-03-18 06:43:27.054 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30102 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30103 (-132.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30095 (-132.9 uncal um), Max = 30107 (-132.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:43:27.054 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30102, posNoise = 5, negNoise = 7
17-03-18 06:43:27.054 -07 000000012 INF: Z Motor: After move to -0.133687, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:27.054 -07 000000012 INF: Z Motor: Settle wait time = 1463 ms, measure time = 110 ms (allowed 150 ms), total time = 1573 ms
17-03-18 06:43:27.054 -07 000000012 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 06:43:27.094 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 06:43:27.094 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:43:27.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:27.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:27.094 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:27.094 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:43:27.094 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:27.094 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:27.094 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:43:27.094 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:43:27.104 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:43:27.104 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:43:27.114 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:43:27.114 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 06:43:27.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:43:27.154 -07 000000592 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:43:27.454 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:43:27.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:43:27.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:43:27.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2607377792, 0x0, 559484976) start.
17-03-18 06:43:27.494 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:43:27.494 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 06:43:27.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:43:27.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2607377792, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 06:43:27.584 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:27.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:43:27.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 06:43:27.594 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:27.594 -07 000000592 INF: Autofocus start
17-03-18 06:43:27.594 -07 000000592 INF: MeasureProfile start
17-03-18 06:43:27.594 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:27.604 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:43:27.604 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:43:27.604 -07 000000592 INF: MeasureProfile done
17-03-18 06:43:27.604 -07 000000592 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:43:27.604 -07 000000592 INF: Autofocus finished
17-03-18 06:43:27.804 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:43:27.804 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:43:27.804 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.133704985902423. ----------
17-03-18 06:43:27.804 -07 000000610 INF: Cycle	152	Tile	18	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:43:27.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27712, sync = True, waitForSettling = True)
17-03-18 06:43:27.814 -07 000000610 INF: Z Motor: Moving to -0.126857 mm, started at -0.133705 mm, distance = 6.85 um
17-03-18 06:43:27.814 -07 000000610 INF: FPGA: Xmit ZDACW 27712\n [Z Motor]
17-03-18 06:43:27.814 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:43:27.824 -07 000000610 INF: FPGA: 'ZDACW 27712' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:43:27.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:27.824 -07 000000012 INF: FPGA: Recv ZDACR 27712
17-03-18 06:43:27.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:27.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:43:27.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:27.984 -07 000000462 INF: FPGA: Recv ZSGSRD 29034
17-03-18 06:43:27.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:43:27.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:27.994 -07 000000012 INF: FPGA: Recv ZSGSRD 29033
17-03-18 06:43:28.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:28.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:28.004 -07 000000462 INF: FPGA: Recv ZSGSRD 29043
17-03-18 06:43:28.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:28.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:28.014 -07 000000012 INF: FPGA: Recv ZSGSRD 29034
17-03-18 06:43:28.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:28.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:28.024 -07 000000592 INF: FPGA: Recv ZSGSRD 29038
17-03-18 06:43:28.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:28.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:28.034 -07 000000585 INF: FPGA: Recv ZSGSRD 29037
17-03-18 06:43:28.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:28.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:28.044 -07 000000592 INF: FPGA: Recv ZSGSRD 29038
17-03-18 06:43:28.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:28.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:28.054 -07 000000012 INF: FPGA: Recv ZSGSRD 29040
17-03-18 06:43:28.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:28.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:28.064 -07 000000592 INF: FPGA: Recv ZSGSRD 29037
17-03-18 06:43:28.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:28.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:28.074 -07 000000585 INF: FPGA: Recv ZSGSRD 29039
17-03-18 06:43:28.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:28.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:28.084 -07 000000592 INF: FPGA: Recv ZPIEZORD 24494
17-03-18 06:43:28.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:28.094 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.229 V. Piezo Error = -10.0 V.
17-03-18 06:43:28.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29037 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29038 (-126.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29033 (-126.1 uncal um), Max = 29043 (-126.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:43:28.094 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29037, posNoise = 6, negNoise = 4
17-03-18 06:43:28.094 -07 000000610 INF: Z Motor: After move to -0.126857, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:28.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:43:28.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:28.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:28.094 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:28.094 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:43:28.094 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:28.094 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:43:28.094 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:43:28.094 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:28.094 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:43:28.094 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:43:28.094 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:43:28.094 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:43:28.094 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:43:28.104 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:43:28.104 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:43:28.104 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:43:28.114 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:43:28.114 -07 000000592 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:43:28.114 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:43:28.114 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:43:28.114 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 27888 150\n [Camera]
17-03-18 06:43:28.314 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:43:28.734 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.99219,
17-03-18 06:43:28.774 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:43:28.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:43:28.774 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:28.774 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:28.774 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:43:28.784 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:43:28.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:43:28.784 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:28.784 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:28.784 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 06:43:28.974 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27888 852
17-03-18 06:43:29.124 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:43:29.174 -07 000000592 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:43:29.174 -07 000000592 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:43:29.174 -07 000000592 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:29.184 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:43:29.184 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:43:29.184 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:29.184 -07 000000592 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:29.184 -07 000000592 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:43:29.184 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:43:29.194 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:43:29.344 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:43:29.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:43:29.344 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:29.344 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:29.344 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 06:43:29.344 -07 000000592 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:43:29.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:43:29.344 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:29.344 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:29.344 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 06:43:29.534 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-18 06:43:29.534 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:43:29.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 27888 150' command took 2 ms to send, 1416 ms to get response, and 1421 ms overall
17-03-18 06:43:29.534 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:43:29.534 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.126863199971448. ------
17-03-18 06:43:29.544 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:29.544 -07 000000592 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13323 mm
17-03-18 06:43:29.544 -07 000000592 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:43:29.544 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:29.544 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:43:29.544 -07 000000012 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 06:43:29.544 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29104, sync = True, waitForSettling = False)
17-03-18 06:43:29.544 -07 000000502 INF: Z Motor: Moving to -0.133230 mm, started at -0.126863 mm, distance = -6.37 um
17-03-18 06:43:29.554 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:43:29.554 -07 000000502 INF: FPGA: Xmit ZDACW 29104\n [Z Motor]
17-03-18 06:43:29.554 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:43:29.564 -07 000000502 INF: FPGA: 'ZDACW 29104' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:43:29.564 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:29.564 -07 000000424 INF: FPGA: Recv YRDPOS 151568
17-03-18 06:43:29.574 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:43:29.574 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:43:29.574 -07 000000012 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:29.574 -07 000000012 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:43:29.574 -07 000000012 INF: Y Motor: Moving 1352 steps-30
17-03-18 06:43:29.584 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:29.584 -07 000000424 INF: FPGA: Recv ZDACR 29104
17-03-18 06:43:29.594 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:43:29.594 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:43:29.594 -07 000000502 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 06:43:29.744 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:43:29.744 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:43:29.744 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:43:29.744 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:29.744 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:43:29.744 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:29.744 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:43:29.754 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:43:29.754 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:43:29.754 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:43:29.774 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:43:29.774 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:43:29.974 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 06:43:29.974 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 399 ms overall
17-03-18 06:43:30.004 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:30.004 -07 000000462 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:43:30.014 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:43:30.014 -07 000000012 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:30.014 -07 000000012 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 06:43:30.014 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.117 mm/sec
17-03-18 06:43:30.964 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:43:30.964 -07 000000462 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:43:30.974 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:30.974 -07 000000012 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:43:30.994 -07 000000012 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:43:30.994 -07 000000012 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:43:30.994 -07 000000012 INF: Y Motor: Moved to 74.8311 after 1446 ms (table move)
17-03-18 06:43:30.994 -07 000000592 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133230 mm (DAC = 29104)
17-03-18 06:43:30.994 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:30.994 -07 000000461 INF: FPGA: Recv ZSGSRD 30031
17-03-18 06:43:31.004 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:43:31.004 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:31.004 -07 000000487 INF: FPGA: Recv ZSGSRD 30022
17-03-18 06:43:31.014 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:31.014 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:31.014 -07 000000579 INF: FPGA: Recv ZSGSRD 30028
17-03-18 06:43:31.024 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:31.024 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:31.024 -07 000000502 INF: FPGA: Recv ZSGSRD 30020
17-03-18 06:43:31.034 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:43:31.034 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:31.034 -07 000000461 INF: FPGA: Recv ZSGSRD 30030
17-03-18 06:43:31.044 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:31.044 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:31.044 -07 000000581 INF: FPGA: Recv ZSGSRD 30035
17-03-18 06:43:31.054 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:31.054 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:31.054 -07 000000462 INF: FPGA: Recv ZSGSRD 30032
17-03-18 06:43:31.064 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:31.064 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:31.064 -07 000000629 INF: FPGA: Recv ZSGSRD 30024
17-03-18 06:43:31.074 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:31.074 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:31.074 -07 000000585 INF: FPGA: Recv ZSGSRD 30028
17-03-18 06:43:31.084 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:31.084 -07 000000592 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:31.084 -07 000000502 INF: FPGA: Recv ZSGSRD 30025
17-03-18 06:43:31.094 -07 000000592 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:31.094 -07 000000592 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:31.094 -07 000000585 INF: FPGA: Recv ZPIEZORD 25771
17-03-18 06:43:31.104 -07 000000592 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:31.104 -07 000000592 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.4 V.
17-03-18 06:43:31.104 -07 000000592 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30028 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30028 (-132.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30020 (-132.4 uncal um), Max = 30035 (-132.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:43:31.104 -07 000000592 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30028, posNoise = 7, negNoise = 8
17-03-18 06:43:31.104 -07 000000592 INF: Z Motor: After move to -0.133230, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:31.104 -07 000000592 INF: Z Motor: Settle wait time = 1449 ms, measure time = 107 ms (allowed 150 ms), total time = 1556 ms
17-03-18 06:43:31.104 -07 000000592 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:43:31.154 -07 000000592 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 06:43:31.154 -07 000000592 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:43:31.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:31.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:31.154 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:31.154 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:31.154 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:43:31.154 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:31.154 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:43:31.154 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:43:31.164 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:43:31.164 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:43:31.174 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:43:31.174 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:43:31.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:43:31.224 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:43:31.514 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:43:31.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:43:31.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:43:31.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 06:43:31.554 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:43:31.554 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 06:43:31.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 06:43:31.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:43:31.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:31.634 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:43:31.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:43:31.664 -07 000000592 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:43:31.664 -07 000000585 INF: Autofocus start
17-03-18 06:43:31.664 -07 000000585 INF: MeasureProfile start
17-03-18 06:43:31.664 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:43:31.674 -07 000000592 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:43:31.674 -07 000000592 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:43:31.674 -07 000000585 INF: MeasureProfile done
17-03-18 06:43:31.674 -07 000000585 INF: X=0  Z correction [um]=-0.02394831
17-03-18 06:43:31.674 -07 000000585 INF: Autofocus finished
17-03-18 06:43:31.874 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:43:31.874 -07 000000592 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:43:31.874 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.133229594203933. ----------
17-03-18 06:43:31.874 -07 000000610 INF: Cycle	152	Tile	19	Exposure Settings		A	464	G	223	T	223	C	464
17-03-18 06:43:31.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27612, sync = True, waitForSettling = True)
17-03-18 06:43:31.884 -07 000000610 INF: Z Motor: Moving to -0.126400 mm, started at -0.133230 mm, distance = 6.83 um
17-03-18 06:43:31.884 -07 000000610 INF: FPGA: Xmit ZDACW 27612\n [Z Motor]
17-03-18 06:43:31.884 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:43:31.884 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:43:31.884 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 151. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2000, R2=2082, Total=4082. Warn if over 250 bubbles per interval.
17-03-18 06:43:31.894 -07 000000610 INF: FPGA: 'ZDACW 27612' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:43:31.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:43:31.894 -07 000000592 INF: FPGA: Recv ZDACR 27612
17-03-18 06:43:31.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:31.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:43:32.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:32.054 -07 000000585 INF: FPGA: Recv ZSGSRD 28964
17-03-18 06:43:32.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:43:32.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:32.064 -07 000000585 INF: FPGA: Recv ZSGSRD 28967
17-03-18 06:43:32.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:32.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:32.074 -07 000000585 INF: FPGA: Recv ZSGSRD 28963
17-03-18 06:43:32.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:32.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:32.084 -07 000000585 INF: FPGA: Recv ZSGSRD 28968
17-03-18 06:43:32.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:32.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:32.094 -07 000000502 INF: FPGA: Recv ZSGSRD 28969
17-03-18 06:43:32.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:32.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:32.104 -07 000000592 INF: FPGA: Recv ZSGSRD 28972
17-03-18 06:43:32.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:32.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:32.114 -07 000000592 INF: FPGA: Recv ZSGSRD 28965
17-03-18 06:43:32.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:32.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:32.124 -07 000000502 INF: FPGA: Recv ZSGSRD 28962
17-03-18 06:43:32.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:32.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:32.134 -07 000000585 INF: FPGA: Recv ZSGSRD 28968
17-03-18 06:43:32.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:32.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:43:32.144 -07 000000502 INF: FPGA: Recv ZSGSRD 28969
17-03-18 06:43:32.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:32.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:43:32.154 -07 000000592 INF: FPGA: Recv ZPIEZORD 24402
17-03-18 06:43:32.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:43:32.164 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.213 V. Piezo Error = -10.0 V.
17-03-18 06:43:32.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.4 um, Read 10 ADC samples: Avg = 28967 (-125.6 uncal um), Error = 0.8 uncal um, Median = 28968 (-125.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28962 (-125.6 uncal um), Max = 28972 (-125.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:43:32.164 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28967, posNoise = 5, negNoise = 5
17-03-18 06:43:32.164 -07 000000610 INF: Z Motor: After move to -0.126400, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:43:32.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:43:32.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:43:32.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:43:32.164 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:43:32.164 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:43:32.164 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:43:32.164 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:43:32.164 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:43:32.164 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:43:32.164 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:43:32.164 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:43:32.164 -07 000000592 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:43:32.164 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:43:32.174 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:43:32.174 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:43:32.174 -07 000000592 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:43:32.174 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:43:32.184 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:43:32.184 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:43:32.184 -07 000000592 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:43:32.184 -07 000000592 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:43:32.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 464 464 223 223 27788 150\n [Camera]
17-03-18 06:43:32.384 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:43:32.844 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-18 06:43:32.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-18 06:43:32.844 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:32.844 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:32.844 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:43:32.844 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-18 06:43:32.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-18 06:43:32.854 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:32.854 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:32.854 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:43:33.044 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27788 849
17-03-18 06:43:33.184 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-18 06:43:33.224 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:43:33.224 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:43:33.224 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:33.224 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:43:33.224 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:43:33.224 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:33.224 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:43:33.234 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:43:33.234 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:43:33.234 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:43:33.414 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1222
17-03-18 06:43:33.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1222
17-03-18 06:43:33.414 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:43:33.414 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:43:33.414 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 06:43:33.414 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1222
17-03-18 06:43:33.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1222
17-03-18 06:43:33.414 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:43:33.414 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:43:33.414 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:43:33.604 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1415
17-03-18 06:43:33.604 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:43:33.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 464 464 223 223 27788 150' command took 2 ms to send, 1414 ms to get response, and 1422 ms overall
17-03-18 06:43:33.824 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 409 ms.
17-03-18 06:43:33.824 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:43:33.824 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:33.824 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 408 ms.
17-03-18 06:43:33.824 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:43:33.824 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:43:33.834 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:43:33.834 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:43:33.834 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-18 06:43:33.834 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:43:33.834 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-18 06:43:33.874 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:43:33.874 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:43:33.914 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 06:43:33.934 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 06:43:33.934 -07 000000610 INF: Imaging Cycle 152: ScanTilesCommand Cycle 152 time end. Duration was 172484 ms.
17-03-18 06:43:33.934 -07 000000610 INF: =================== Cycle #152 ===================
17-03-18 06:43:33.934 -07 000000610 INF: ===================  ===================
17-03-18 06:43:33.934 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:43:33.944 -07 000000012 INF: FPGA: Recv EXLED1ADCR 27
17-03-18 06:43:33.944 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 3 ms to get response, and 8 ms overall
17-03-18 06:43:33.944 -07 000000382 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW
17-03-18 06:43:33.944 -07 000000382 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 152, FrontChillerTemperature: 3.996267, FrontChillerHeatSinkTemperature: 0.480607, AmbientTemperature: 18.68469, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.40841, GreenLEDSensorTemperature: 27.4111, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235
17-03-18 06:43:34.054 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.
17-03-18 06:43:34.094 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 153, FrontChillerTemperature: 3.996267,