17-03-18 06:48:13.464 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:48:13.464 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 06:48:13.464 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8306 mm, delta = 0.5500 mm
17-03-18 06:48:13.464 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:48:13.464 -07 000000455 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:48:13.474 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:48:13.474 -07 000000610 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:48:13.474 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 06:48:13.474 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 06:48:13.474 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 06:48:13.594 -07 000000455 INF: FPGA: Recv YMVTO 154378 874
17-03-18 06:48:13.594 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 116 ms overall
17-03-18 06:48:13.594 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 06:48:13.594 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 879 steps, but required 874 steps (0.546 mm). Slippage = -0.003 mm (-0.01%).
17-03-18 06:48:13.594 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.550 mm, average velocity = 4.741 mm/sec
17-03-18 06:48:13.824 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.011254,
17-03-18 06:48:16.594 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:48:16.604 -07 000000591 INF: FPGA: Recv YRDPOS 154380
17-03-18 06:48:16.604 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:48:16.604 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:48:16.624 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:48:16.624 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-18 06:48:16.624 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3160 ms
17-03-18 06:48:16.634 -07 000000610 INF: =================== Cycle #154, Flow Cell Temp 60° ===================
17-03-18 06:48:16.634 -07 000000610 INF: =================== Cycle #154, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 06:48:16.634 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 06:48:16.634 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:48:16.644 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:48:16.644 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:48:16.644 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-18 06:48:16.654 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:48:16.654 -07 000000610 INF: =================== Cycle #154, Flow Cell Temp 60° ===================
17-03-18 06:48:16.654 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:48:16.654 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:48:16.654 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:48:16.684 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:48:16.684 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 06:48:16.684 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:48:16.894 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:48:16.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2003, R2=2087, Total=4090. Warn if over 250 bubbles per interval.
17-03-18 06:48:16.984 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:48:17.004 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:48:17.004 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:48:17.054 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:48:17.074 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:48:17.074 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:48:17.174 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:48:17.174 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:48:17.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:17.204 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:48:17.204 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:48:17.204 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:48:17.334 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:48:17.374 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:19.184 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.970374,
17-03-18 06:48:20.504 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:20.534 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:20.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:20.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:21.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:21.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:21.434 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:48:21.434 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:48:21.564 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:21.594 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:48:21.594 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:48:21.724 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:21.754 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:48:21.754 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:48:21.754 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:48:21.884 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:48:21.894 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 6
17-03-18 06:48:21.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=6, R2=3, Total=9. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2009, R2=2090, Total=4099. Warn if over 250 bubbles per interval.
17-03-18 06:48:21.914 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:22.344 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:22.374 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:22.374 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:48:22.374 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:48:23.594 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:48:23.594 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 06:48:23.594 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:48:23.614 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:48:23.614 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 06:48:23.614 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 06:48:23.744 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:48:23.764 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 06:48:23.764 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 06:48:23.814 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:48:24.554 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:48:24.554 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:48:24.654 -07 000000610 INF: =================== Cycle #154, Pumping Reagent CMS (4) ===================
17-03-18 06:48:24.654 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:48:24.654 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:24.684 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:48:24.684 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:48:24.684 -07 000000610 INF: =================== Cycle #154, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 06:48:24.814 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:48:24.844 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.99219,
17-03-18 06:48:24.854 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:26.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:26.324 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:26.744 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:26.774 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:26.774 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 06:48:26.774 -07 000000610 INF: =================== Cycle #154, Pumping Reagent CMS (4) ===================
17-03-18 06:48:26.894 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:48:26.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2009, R2=2090, Total=4099. Warn if over 250 bubbles per interval.
17-03-18 06:48:26.904 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:26.934 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:48:26.934 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:48:27.064 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:27.094 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:48:27.094 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:48:27.094 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:48:27.224 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:48:27.254 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:27.684 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:27.714 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:27.714 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:48:27.714 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:48:28.934 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:48:28.934 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:48:28.934 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:48:28.954 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:48:28.954 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 06:48:28.954 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 06:48:29.104 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:48:29.124 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 06:48:29.124 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 06:48:29.174 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:48:29.194 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:48:29.194 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:48:29.294 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:48:29.294 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:48:29.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:29.324 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:48:29.324 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:48:29.324 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:48:29.454 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:48:29.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:30.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:30.394 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:30.394 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:48:30.394 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:48:30.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:30.554 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:48:30.554 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:48:30.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:30.714 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:48:30.714 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:48:30.714 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:48:30.844 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:48:30.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:30.914 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.003063,
17-03-18 06:48:31.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:31.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:31.334 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:48:31.334 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:48:31.334 -07 000000447 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:48:31.334 -07 000000474 INF: WaitCommand(10000) start
17-03-18 06:48:31.334 -07 000000447 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:48:31.894 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 06:48:31.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2011, R2=2092, Total=4103. Warn if over 250 bubbles per interval.
17-03-18 06:48:32.554 -07 000000447 INF: AsyncDelayTimer waited 1214ms
17-03-18 06:48:32.554 -07 000000447 INF: LanePump: Xmit /1?\r
17-03-18 06:48:33.324 -07 000000447 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:48:33.324 -07 000000447 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:48:33.454 -07 000000447 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:48:33.494 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:35.024 -07 000000447 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:35.054 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:35.474 -07 000000447 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:35.504 -07 000000447 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:35.504 -07 000000447 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:48:35.504 -07 000000447 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:48:35.504 -07 000000447 INF: ===================  ===================
17-03-18 06:48:36.274 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.015368,
17-03-18 06:48:36.954 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:48:36.954 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2011, R2=2092, Total=4103. Warn if over 250 bubbles per interval.
17-03-18 06:48:41.344 -07 000000474 INF: WaitCommand(10000) end
17-03-18 06:48:41.344 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:48:41.344 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 06:48:41.344 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:41.384 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:48:41.384 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:48:41.384 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:48:41.514 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 06:48:41.554 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:41.894 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:48:41.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2011, R2=2092, Total=4103. Warn if over 250 bubbles per interval.
17-03-18 06:48:42.284 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.004458,
17-03-18 06:48:46.894 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 06:48:46.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:48:47.644 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.99219,
17-03-18 06:48:47.684 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:47.714 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:48.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:48.714 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:49.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:49.164 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:49.584 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:49.614 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:49.614 -07 000000610 INF: LanePump: Waited 8059 ms for pump motion to complete
17-03-18 06:48:49.614 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:48:49.744 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:49.774 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:48:49.774 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:48:49.904 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:49.934 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:48:49.934 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:48:49.934 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:48:50.064 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:48:50.094 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:50.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:50.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:50.554 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:48:50.554 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:48:51.774 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:48:51.774 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 06:48:51.774 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:48:51.794 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:48:51.794 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 06:48:51.794 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 06:48:51.894 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:48:51.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:48:52.004 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:48:52.024 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 06:48:52.024 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 06:48:52.074 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:48:52.094 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:48:52.094 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:48:52.194 -07 000000610 INF: =================== Cycle #154, Pumping Reagent IMT (1) ===================
17-03-18 06:48:52.194 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:48:52.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:52.224 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:48:52.224 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:48:52.224 -07 000000610 INF: =================== Cycle #154, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 06:48:52.354 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:48:52.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:53.014 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.997626,
17-03-18 06:48:53.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:53.864 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:54.284 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:54.314 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:54.314 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:48:54.314 -07 000000610 INF: =================== Cycle #154, Pumping Reagent IMT (1) ===================
17-03-18 06:48:54.444 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:54.474 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:48:54.474 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:48:54.604 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:54.634 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:48:54.634 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:48:54.634 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:48:54.764 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:48:54.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:55.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:55.254 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:55.254 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:48:55.254 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:48:56.474 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:48:56.474 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:48:56.474 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:48:56.494 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:48:56.494 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 06:48:56.494 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:48:56.724 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:48:56.744 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 06:48:56.744 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 06:48:56.794 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:48:56.814 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:48:56.814 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:48:56.894 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:48:56.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:48:56.914 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:48:56.914 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:48:56.914 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:56.944 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:48:56.944 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:48:56.944 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:48:57.074 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:48:57.114 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:48:57.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:58.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:58.014 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:48:58.014 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:48:58.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:58.174 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:48:58.174 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:48:58.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:48:58.334 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:48:58.334 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:48:58.334 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:48:58.374 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.977204,
17-03-18 06:48:58.464 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:48:58.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:58.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:48:58.954 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:48:58.954 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:48:58.954 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:48:58.954 -07 000000610 INF: =================== Cycle #154, Flow Cell Temp 65° ===================
17-03-18 06:48:58.954 -07 000000610 INF: =================== Cycle #154, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 06:48:58.954 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 06:48:58.954 -07 000000455 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:48:58.964 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:48:58.964 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:48:58.964 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-18 06:48:58.974 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:48:58.974 -07 000000610 INF: =================== Cycle #154, Flow Cell Temp 65° ===================
17-03-18 06:48:58.974 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:48:58.974 -07 000000610 INF: WaitCommand(30000) start
17-03-18 06:49:01.894 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:49:01.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:49:04.474 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.994908,
17-03-18 06:49:06.894 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:49:06.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:49:09.834 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.015368,
17-03-18 06:49:11.894 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:49:11.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:49:15.204 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.011254,
17-03-18 06:49:16.894 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:49:16.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:49:20.574 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.997626,
17-03-18 06:49:21.894 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:49:21.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:49:26.574 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.999021,
17-03-18 06:49:26.894 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:49:26.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:49:28.984 -07 000000610 INF: WaitCommand(30000) end
17-03-18 06:49:28.984 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:49:28.984 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 06:49:29.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:49:29.114 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:49:29.114 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:49:29.114 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:49:29.244 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 06:49:29.284 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:49:29.824 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:49:29.854 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:49:29.854 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 06:49:29.854 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:49:29.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:49:30.014 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:49:30.014 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:49:30.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:49:30.174 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:49:30.174 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:49:30.174 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:49:30.304 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:49:30.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:49:30.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:49:30.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:49:30.794 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:49:30.794 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:49:30.794 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:49:30.794 -07 000000590 INF: WaitCommand(30000) start
17-03-18 06:49:30.794 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:49:31.894 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:49:31.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:49:31.934 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.986717,
17-03-18 06:49:32.014 -07 000000480 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:49:32.014 -07 000000480 INF: LanePump: Xmit /1?\r
17-03-18 06:49:32.044 -07 000000480 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:49:32.044 -07 000000480 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:49:32.174 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:49:32.214 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:49:34.554 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-18 06:49:34.584 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:49:35.004 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-18 06:49:35.034 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:49:35.034 -07 000000480 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 06:49:35.034 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:49:35.034 -07 000000480 INF: ===================  ===================
17-03-18 06:49:36.894 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:49:36.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:49:37.304 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.000345,
17-03-18 06:49:41.894 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:49:41.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:49:43.354 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.018051,
17-03-18 06:49:46.894 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:49:46.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:49:48.714 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.997626,
17-03-18 06:49:51.894 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:49:51.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:49:54.094 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.994908,
17-03-18 06:49:56.894 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:49:56.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:49:59.464 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.004458,
17-03-18 06:50:00.804 -07 000000590 INF: WaitCommand(30000) end
17-03-18 06:50:00.804 -07 000000610 INF: =================== Cycle #154, Flow Cell Temp 22° ===================
17-03-18 06:50:00.804 -07 000000610 INF: =================== Cycle #154, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 06:50:00.804 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 06:50:00.804 -07 000000590 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:50:00.814 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:50:00.814 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:50:00.814 -07 000000455 INF: FPGA: Recv TEC2EN 
17-03-18 06:50:00.824 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:00.824 -07 000000610 INF: =================== Cycle #154, Flow Cell Temp 22° ===================
17-03-18 06:50:00.824 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:50:00.824 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:50:00.824 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:50:00.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:50:00.864 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:50:00.864 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:50:00.864 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:50:00.994 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:50:01.034 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:50:01.894 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:50:01.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2013, R2=2094, Total=4107. Warn if over 250 bubbles per interval.
17-03-18 06:50:04.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:50:04.194 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:50:04.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:50:04.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:50:04.824 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.993549,
17-03-18 06:50:05.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:50:05.094 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:50:05.094 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:50:05.094 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:50:05.224 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:50:05.254 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:50:05.254 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:50:05.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:50:05.414 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:50:05.414 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:50:05.414 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:50:05.544 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:50:05.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:50:06.004 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:50:06.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:50:06.034 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:50:06.034 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:50:06.904 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 06:50:06.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:50:07.254 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 06:50:07.254 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 06:50:07.254 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:50:07.274 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:50:07.274 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 06:50:07.274 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 06:50:07.424 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:50:07.444 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:50:07.444 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:50:07.494 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:50:07.514 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:50:07.514 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:50:07.614 -07 000000610 INF: =================== Cycle #154, Pumping Reagent USM (2) ===================
17-03-18 06:50:07.614 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:50:07.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:50:07.644 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:50:07.644 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:50:07.644 -07 000000610 INF: =================== Cycle #154, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 06:50:07.774 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:50:07.814 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:50:09.254 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:50:09.284 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:50:09.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:50:09.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:50:09.734 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 06:50:09.734 -07 000000610 INF: =================== Cycle #154, Pumping Reagent USM (2) ===================
17-03-18 06:50:09.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:50:09.894 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:50:09.894 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:50:10.024 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:50:10.054 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:50:10.054 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:50:10.054 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:50:10.184 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:50:10.194 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.997626,
17-03-18 06:50:10.214 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:50:10.644 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:50:10.674 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:50:10.674 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:50:10.674 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:50:11.894 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 06:50:11.894 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:50:11.894 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:50:11.894 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:50:11.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:50:11.914 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:50:11.914 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 06:50:11.914 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:50:12.064 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:50:12.084 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:50:12.084 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:50:12.134 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:50:12.154 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:50:12.154 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:50:12.254 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:50:12.254 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:50:12.254 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:50:12.284 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:50:12.284 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:50:12.284 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:50:12.414 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:50:12.454 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:50:13.324 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:50:13.354 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:50:13.354 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 06:50:13.354 -07 000000610 INF: =================== Cycle #154, Pumping Reagent PR2 (3) ===================
17-03-18 06:50:13.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:50:13.514 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:50:13.514 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:50:13.644 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:50:13.674 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:50:13.674 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:50:13.674 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:50:13.804 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:50:13.834 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:50:14.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:50:14.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:50:14.294 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:50:14.294 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:50:14.294 -07 000000461 INF: WaitCommand(10000) start
17-03-18 06:50:14.294 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:50:14.294 -07 000000590 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:50:15.514 -07 000000590 INF: AsyncDelayTimer waited 1214ms
17-03-18 06:50:15.514 -07 000000590 INF: LanePump: Xmit /1?\r
17-03-18 06:50:15.544 -07 000000590 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:50:15.544 -07 000000590 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:50:15.674 -07 000000590 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:50:16.504 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.997626,
17-03-18 06:50:16.514 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:50:16.894 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:50:16.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:50:18.044 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 06:50:18.074 -07 000000590 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:50:18.074 -07 000000590 INF: LanePump: Waited 1560 ms for pump motion to complete
17-03-18 06:50:18.074 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:50:18.074 -07 000000590 INF: ===================  ===================
17-03-18 06:50:21.864 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.99219,
17-03-18 06:50:21.894 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:50:21.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:50:24.304 -07 000000461 INF: WaitCommand(10000) end
17-03-18 06:50:24.304 -07 000000610 INF: =================== Cycle #154, Imaging ===================
17-03-18 06:50:24.304 -07 000000610 INF: Imaging Cycle 154: ScanTilesCommand Cycle 154 time start.
17-03-18 06:50:24.304 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 06:50:24.304 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:50:24.334 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:50:24.334 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 06:50:24.334 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 06:50:24.634 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:50:24.654 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:50:24.654 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:50:24.704 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:50:24.724 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:50:24.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:50:24.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:50:24.724 -07 000000590 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 06:50:24.724 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:50:24.724 -07 000000590 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 06:50:24.724 -07 000000447 INF: FPGA: Recv EXLED1ON 
17-03-18 06:50:24.734 -07 000000590 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:50:24.734 -07 000000590 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 06:50:24.734 -07 000000012 INF: FPGA: Recv EXLED1ADCR 23127
17-03-18 06:50:24.744 -07 000000590 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:24.744 -07 000000590 INF: RedLED: Using Red data: Photodiode ADC 23127 --> 7.4 mW (old method), or 205.0 mW (new method). Difference = 197.6 mW
17-03-18 06:50:24.744 -07 000000590 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 06:50:24.744 -07 000000012 INF: FPGA: Recv EXLED1OFF 
17-03-18 06:50:24.754 -07 000000590 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:24.754 -07 000000590 INF: RedLED: LED was on for 20 ms
17-03-18 06:50:24.754 -07 000000590 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-18 06:50:24.754 -07 000000590 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 06:50:24.754 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:50:24.754 -07 000000590 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 06:50:24.754 -07 000000012 INF: FPGA: Recv EXLED2ON 
17-03-18 06:50:24.764 -07 000000590 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:50:24.764 -07 000000590 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:50:24.764 -07 000000012 INF: FPGA: Recv EXLED1ADCR 2100
17-03-18 06:50:24.774 -07 000000590 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:24.774 -07 000000590 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-18 06:50:24.774 -07 000000590 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 06:50:24.774 -07 000000474 INF: FPGA: Recv EXLED2OFF 
17-03-18 06:50:24.784 -07 000000590 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:24.784 -07 000000590 INF: GreenLED: LED was on for 20 ms
17-03-18 06:50:24.784 -07 000000590 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 06:50:24.784 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:50:24.784 -07 000000585 INF: FPGA: Recv EMCUR 
17-03-18 06:50:24.794 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:50:24.794 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 06:50:25.294 -07 000000585 INF: FPGA: Recv EMOUT
17-03-18 06:50:25.294 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:50:25.294 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 06:50:25.294 -07 000000455 INF: FPGA: Recv EMCUR 
17-03-18 06:50:25.304 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:50:25.304 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:50:25.304 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.126477747242942. ------
17-03-18 06:50:25.304 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:50:25.304 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17841 mm
17-03-18 06:50:25.304 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:50:25.304 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:50:25.304 -07 000000012 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-18 06:50:25.304 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38974, sync = True, waitForSettling = False)
17-03-18 06:50:25.304 -07 000000447 INF: Z Motor: Moving to -0.178412 mm, started at -0.126478 mm, distance = -51.93 um
17-03-18 06:50:25.304 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:50:25.314 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:50:25.314 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:50:25.324 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:25.324 -07 000000585 INF: FPGA: Recv YRDPOS 154380
17-03-18 06:50:25.334 -07 000000447 INF: FPGA: Xmit ZDACW 38974\n [Z Motor]
17-03-18 06:50:25.334 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:50:25.334 -07 000000012 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:25.334 -07 000000012 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 06:50:25.334 -07 000000012 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:50:25.334 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:50:25.344 -07 000000447 INF: FPGA: 'ZDACW 38974' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 06:50:25.344 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:25.344 -07 000000444 INF: FPGA: Recv ZDACR 38974
17-03-18 06:50:25.354 -07 000000012 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:50:25.354 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:25.354 -07 000000447 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 06:50:25.514 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:50:25.514 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 06:50:26.894 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:50:26.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:50:27.034 -07 000000461 INF: FPGA: Recv YMVTO 122701 24778
17-03-18 06:50:27.034 -07 000000012 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 06:50:27.034 -07 000000012 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:50:27.034 -07 000000012 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24778 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 06:50:27.034 -07 000000012 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.468 mm, average velocity = 9.067 mm/sec
17-03-18 06:50:27.234 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.014009,
17-03-18 06:50:29.884 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:29.884 -07 000000444 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:50:29.894 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:29.894 -07 000000012 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:29.924 -07 000000012 INF: Y Motor: After move to 59.912609, error = -0.003429, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:50:29.924 -07 000000012 INF: Y Motor: Position error after settling = -7 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 06:50:29.924 -07 000000012 INF: Y Motor: Moved to 59.9092 after 4615 ms
17-03-18 06:50:29.924 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178412 mm (DAC = 38974)
17-03-18 06:50:29.924 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:29.924 -07 000000606 INF: FPGA: Recv ZSGSRD 37067
17-03-18 06:50:29.934 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:50:29.934 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:29.934 -07 000000474 INF: FPGA: Recv ZSGSRD 37063
17-03-18 06:50:29.944 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:29.944 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:29.944 -07 000000606 INF: FPGA: Recv ZSGSRD 37062
17-03-18 06:50:29.954 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:29.954 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:29.954 -07 000000455 INF: FPGA: Recv ZSGSRD 37061
17-03-18 06:50:29.964 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:29.964 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:29.964 -07 000000455 INF: FPGA: Recv ZSGSRD 37061
17-03-18 06:50:29.974 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:29.974 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:29.974 -07 000000461 INF: FPGA: Recv ZSGSRD 37065
17-03-18 06:50:29.984 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:29.984 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:29.984 -07 000000474 INF: FPGA: Recv ZSGSRD 37062
17-03-18 06:50:29.994 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:29.994 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:29.994 -07 000000585 INF: FPGA: Recv ZSGSRD 37064
17-03-18 06:50:30.004 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:30.004 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:30.004 -07 000000474 INF: FPGA: Recv ZSGSRD 37060
17-03-18 06:50:30.014 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:30.014 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:30.014 -07 000000585 INF: FPGA: Recv ZSGSRD 37062
17-03-18 06:50:30.024 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:30.024 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:30.024 -07 000000474 INF: FPGA: Recv ZPIEZORD 33262
17-03-18 06:50:30.034 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:30.034 -07 000000590 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -8.4 V.
17-03-18 06:50:30.034 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37063 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37062 (-177.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37060 (-177.5 uncal um), Max = 37067 (-177.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:50:30.034 -07 000000590 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37063, posNoise = 4, negNoise = 3
17-03-18 06:50:30.034 -07 000000590 INF: Z Motor: After move to -0.178412, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:30.034 -07 000000590 INF: Z Motor: Settle wait time = 4618 ms, measure time = 104 ms (allowed 150 ms), total time = 4722 ms
17-03-18 06:50:30.034 -07 000000590 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:50:30.084 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4774 ms
17-03-18 06:50:30.084 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:50:30.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:50:30.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:50:30.084 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:50:30.084 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:50:30.084 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:50:30.084 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:50:30.084 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:50:30.084 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:50:30.114 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 06:50:30.114 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:50:30.114 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:50:30.114 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:50:30.124 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:50:30.124 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 06:50:30.134 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:50:30.174 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:50:30.474 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:50:30.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:50:30.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:50:30.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2587593968, 0x0, 559484976) start.
17-03-18 06:50:30.514 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:50:30.514 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:50:30.514 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:50:30.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2587593968, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:50:30.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:30.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:50:30.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:50:30.714 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:50:30.714 -07 000000585 INF: Image SNR check: start
17-03-18 06:50:30.714 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:50:30.724 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:50:30.724 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:50:30.734 -07 000000585 INF: Image SNR check: pass  [peak (Max-Min)=129.43]
17-03-18 06:50:30.734 -07 000000585 INF: Autofocus start
17-03-18 06:50:30.734 -07 000000585 INF: MeasureProfile start
17-03-18 06:50:30.744 -07 000000585 INF: MeasureProfile done
17-03-18 06:50:30.744 -07 000000585 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:50:30.744 -07 000000585 INF: Autofocus finished
17-03-18 06:50:30.924 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:50:30.924 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:50:30.924 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9091796875, Z-position -0.178423926621221. ----------
17-03-18 06:50:30.924 -07 000000610 INF: Cycle	154	Tile	1	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:50:30.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37489, sync = True, waitForSettling = True)
17-03-18 06:50:30.934 -07 000000610 INF: Z Motor: Moving to -0.171614 mm, started at -0.178424 mm, distance = 6.81 um
17-03-18 06:50:30.934 -07 000000610 INF: FPGA: Xmit ZDACW 37489\n [Z Motor]
17-03-18 06:50:30.934 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:50:30.944 -07 000000610 INF: FPGA: 'ZDACW 37489' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:50:30.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:30.944 -07 000000501 INF: FPGA: Recv ZDACR 37489
17-03-18 06:50:30.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:30.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:50:31.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:31.104 -07 000000479 INF: FPGA: Recv ZSGSRD 36006
17-03-18 06:50:31.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:31.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:31.114 -07 000000611 INF: FPGA: Recv ZSGSRD 36004
17-03-18 06:50:31.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:31.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:31.124 -07 000000447 INF: FPGA: Recv ZSGSRD 36001
17-03-18 06:50:31.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:31.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:31.134 -07 000000606 INF: FPGA: Recv ZSGSRD 36003
17-03-18 06:50:31.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:31.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:31.144 -07 000000608 INF: FPGA: Recv ZSGSRD 36001
17-03-18 06:50:31.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:31.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:31.154 -07 000000611 INF: FPGA: Recv ZSGSRD 36008
17-03-18 06:50:31.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:31.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:31.164 -07 000000455 INF: FPGA: Recv ZSGSRD 36001
17-03-18 06:50:31.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:31.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:31.174 -07 000000461 INF: FPGA: Recv ZSGSRD 35998
17-03-18 06:50:31.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:31.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:31.184 -07 000000462 INF: FPGA: Recv ZSGSRD 36007
17-03-18 06:50:31.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:31.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:31.194 -07 000000590 INF: FPGA: Recv ZSGSRD 36007
17-03-18 06:50:31.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:31.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:31.204 -07 000000474 INF: FPGA: Recv ZPIEZORD 31887
17-03-18 06:50:31.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:31.214 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -9.1 V.
17-03-18 06:50:31.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36004 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36004 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35998 (-170.7 uncal um), Max = 36008 (-170.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:50:31.214 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36004, posNoise = 4, negNoise = 6
17-03-18 06:50:31.214 -07 000000610 INF: Z Motor: After move to -0.171614, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:31.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:50:31.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:50:31.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:50:31.214 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:50:31.214 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:50:31.214 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:50:31.214 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:50:31.214 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:50:31.214 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:50:31.214 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:50:31.214 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:50:31.214 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:50:31.214 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:50:31.224 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:50:31.224 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:50:31.234 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 06:50:31.234 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:50:31.234 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 06:50:31.234 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:50:31.244 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:50:31.244 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:50:31.254 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:50:31.254 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 35 ms.
17-03-18 06:50:31.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37665 150\n [Camera]
17-03-18 06:50:31.454 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:50:31.894 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:50:31.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:50:31.924 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:50:31.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:50:31.924 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:31.924 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:50:31.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:50:31.924 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:31.924 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:31.924 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-18 06:50:31.924 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:31.924 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:50:32.114 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37665 853
17-03-18 06:50:32.264 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:50:32.324 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:50:32.324 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:50:32.324 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:32.324 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:50:32.324 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:50:32.324 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:32.334 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:50:32.334 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 06:50:32.334 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:50:32.344 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:50:32.484 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:50:32.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:50:32.494 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:32.494 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:32.494 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2619673760, 0x0, 391868352) start.
17-03-18 06:50:32.494 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:50:32.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:50:32.494 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:32.624 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:32.624 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:50:32.624 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.994908,
17-03-18 06:50:32.684 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:50:32.684 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:50:32.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37665 150' command took 2 ms to send, 1421 ms to get response, and 1428 ms overall
17-03-18 06:50:32.684 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.171832
17-03-18 06:50:32.684 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17183 mm
17-03-18 06:50:32.684 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:50:32.684 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:50:32.684 -07 000000461 INF: Y Motor: Moving to 60.7426 mm, started at 59.9092 mm, delta = 0.8334 mm
17-03-18 06:50:32.684 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37537, sync = True, waitForSettling = False)
17-03-18 06:50:32.684 -07 000000501 INF: Z Motor: Moving to -0.171833 mm, started at -0.171621 mm, distance = -0.21 um
17-03-18 06:50:32.684 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:32.684 -07 000000430 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:50:32.694 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:50:32.694 -07 000000461 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:32.694 -07 000000461 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:50:32.694 -07 000000461 INF: Y Motor: Moving 1333 steps0
17-03-18 06:50:32.694 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:50:32.704 -07 000000501 INF: FPGA: Xmit ZDACW 37537\n [Z Motor]
17-03-18 06:50:32.704 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:50:32.714 -07 000000501 INF: FPGA: 'ZDACW 37537' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:50:32.714 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:32.714 -07 000000430 INF: FPGA: Recv ZDACR 37537
17-03-18 06:50:32.724 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:32.724 -07 000000501 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 06:50:32.894 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2619673760, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:50:32.894 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:50:32.894 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:32.904 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:50:32.904 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:50:33.014 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 06:50:33.014 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:50:33.014 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:33.014 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:50:33.024 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 06:50:33.074 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 06:50:33.074 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 381 ms overall
17-03-18 06:50:33.114 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:33.114 -07 000000479 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:50:33.124 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:50:33.124 -07 000000461 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:33.124 -07 000000461 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:50:33.124 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.833 mm, average velocity = 2.187 mm/sec
17-03-18 06:50:34.074 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:34.074 -07 000000430 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:50:34.084 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:34.084 -07 000000461 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:34.114 -07 000000461 INF: Y Motor: After move to 60.742607, error = -0.011162, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:50:34.114 -07 000000461 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:50:34.114 -07 000000461 INF: Y Motor: Moved to 60.7314 after 1428 ms (table move)
17-03-18 06:50:34.114 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171833 mm (DAC = 37537)
17-03-18 06:50:34.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.124 -07 000000461 INF: FPGA: Recv ZSGSRD 36034
17-03-18 06:50:34.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:50:34.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.124 -07 000000461 INF: FPGA: Recv ZSGSRD 36040
17-03-18 06:50:34.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:50:34.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.134 -07 000000012 INF: FPGA: Recv ZSGSRD 36036
17-03-18 06:50:34.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.144 -07 000000461 INF: FPGA: Recv ZSGSRD 36029
17-03-18 06:50:34.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.154 -07 000000461 INF: FPGA: Recv ZSGSRD 36037
17-03-18 06:50:34.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.164 -07 000000461 INF: FPGA: Recv ZSGSRD 36038
17-03-18 06:50:34.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.174 -07 000000012 INF: FPGA: Recv ZSGSRD 36045
17-03-18 06:50:34.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.184 -07 000000012 INF: FPGA: Recv ZSGSRD 36040
17-03-18 06:50:34.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.194 -07 000000012 INF: FPGA: Recv ZSGSRD 36041
17-03-18 06:50:34.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.204 -07 000000461 INF: FPGA: Recv ZSGSRD 36037
17-03-18 06:50:34.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.214 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:34.214 -07 000000461 INF: FPGA: Recv ZPIEZORD 31981
17-03-18 06:50:34.224 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.224 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -9.0 V.
17-03-18 06:50:34.224 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36038 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36038 (-171.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36029 (-170.9 uncal um), Max = 36045 (-171.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:50:34.224 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36038, posNoise = 7, negNoise = 9
17-03-18 06:50:34.224 -07 000000610 INF: Z Motor: After move to -0.171833, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:34.224 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 103 ms (allowed 150 ms), total time = 1534 ms
17-03-18 06:50:34.224 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:50:34.274 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-18 06:50:34.274 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:50:34.274 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7314453125, Z-position -0.171839109175916. ----------
17-03-18 06:50:34.274 -07 000000610 INF: Cycle	154	Tile	2	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:50:34.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37360, sync = True, waitForSettling = True)
17-03-18 06:50:34.274 -07 000000610 INF: Z Motor: Moving to -0.171023 mm, started at -0.171839 mm, distance = 0.82 um
17-03-18 06:50:34.274 -07 000000610 INF: FPGA: Xmit ZDACW 37360\n [Z Motor]
17-03-18 06:50:34.274 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:50:34.284 -07 000000610 INF: FPGA: 'ZDACW 37360' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:50:34.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:34.284 -07 000000501 INF: FPGA: Recv ZDACR 37360
17-03-18 06:50:34.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:50:34.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.444 -07 000000501 INF: FPGA: Recv ZSGSRD 35912
17-03-18 06:50:34.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:34.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.454 -07 000000501 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:50:34.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.464 -07 000000462 INF: FPGA: Recv ZSGSRD 35915
17-03-18 06:50:34.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.474 -07 000000501 INF: FPGA: Recv ZSGSRD 35908
17-03-18 06:50:34.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.484 -07 000000462 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:50:34.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.494 -07 000000462 INF: FPGA: Recv ZSGSRD 35916
17-03-18 06:50:34.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.504 -07 000000462 INF: FPGA: Recv ZSGSRD 35913
17-03-18 06:50:34.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.514 -07 000000455 INF: FPGA: Recv ZSGSRD 35913
17-03-18 06:50:34.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.524 -07 000000455 INF: FPGA: Recv ZSGSRD 35909
17-03-18 06:50:34.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:34.534 -07 000000585 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:50:34.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:34.544 -07 000000462 INF: FPGA: Recv ZPIEZORD 31791
17-03-18 06:50:34.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:34.554 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.1 V.
17-03-18 06:50:34.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35912 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35912 (-170.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35908 (-170.1 uncal um), Max = 35916 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:50:34.554 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35912, posNoise = 4, negNoise = 4
17-03-18 06:50:34.554 -07 000000610 INF: Z Motor: After move to -0.171023, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:34.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:50:34.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:50:34.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:50:34.554 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:50:34.554 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:50:34.554 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:50:34.554 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:50:34.554 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:50:34.554 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:50:34.554 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:50:34.554 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:50:34.554 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:50:34.554 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:50:34.554 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:50:34.564 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:50:34.564 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:50:34.564 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:50:34.574 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:50:34.574 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:50:34.574 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:50:34.574 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:50:34.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37537 150\n [Camera]
17-03-18 06:50:34.774 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:50:35.244 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:50:35.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:50:35.244 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:35.254 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:50:35.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:50:35.254 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:35.254 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:35.254 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 06:50:35.254 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:35.254 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:50:35.444 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37537 853
17-03-18 06:50:35.594 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:50:35.644 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:50:35.644 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:50:35.644 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:35.654 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:50:35.654 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:50:35.654 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:50:35.654 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:50:35.654 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:35.664 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:50:35.664 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:50:35.814 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:50:35.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:50:35.814 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:35.814 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:50:35.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:50:35.814 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:35.824 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:35.824 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:50:35.934 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:35.934 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:50:36.004 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1422
17-03-18 06:50:36.004 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:50:36.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37537 150' command took 2 ms to send, 1419 ms to get response, and 1430 ms overall
17-03-18 06:50:36.014 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.171798
17-03-18 06:50:36.014 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17180 mm
17-03-18 06:50:36.014 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:50:36.014 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:50:36.014 -07 000000455 INF: Y Motor: Moving to 61.5726 mm, started at 60.7314 mm, delta = 0.8412 mm
17-03-18 06:50:36.014 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:36.014 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 37529, sync = True, waitForSettling = False)
17-03-18 06:50:36.014 -07 000000479 INF: Z Motor: Moving to -0.171797 mm, started at -0.171030 mm, distance = -0.77 um
17-03-18 06:50:36.014 -07 000000462 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:50:36.024 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:50:36.024 -07 000000455 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:36.024 -07 000000455 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:50:36.024 -07 000000455 INF: Y Motor: Moving 1346 steps-23
17-03-18 06:50:36.024 -07 000000479 INF: FPGA: Xmit ZDACW 37529\n [Z Motor]
17-03-18 06:50:36.024 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:50:36.034 -07 000000479 INF: FPGA: 'ZDACW 37529' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:50:36.034 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:50:36.044 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:36.044 -07 000000461 INF: FPGA: Recv ZDACR 37529
17-03-18 06:50:36.054 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:50:36.054 -07 000000479 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:50:36.214 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:50:36.214 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:50:36.214 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:36.214 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:50:36.214 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:50:36.334 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:50:36.334 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:50:36.334 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:36.344 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:50:36.344 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-18 06:50:36.404 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:50:36.404 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:50:36.464 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:36.464 -07 000000430 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:50:36.474 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:36.474 -07 000000455 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:36.474 -07 000000455 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:50:36.474 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.841 mm, average velocity = 2.168 mm/sec
17-03-18 06:50:36.894 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:50:36.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:50:37.424 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:37.424 -07 000000585 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:50:37.434 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:37.434 -07 000000455 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:37.464 -07 000000455 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:50:37.464 -07 000000455 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:50:37.464 -07 000000455 INF: Y Motor: Moved to 61.5625 after 1448 ms (table move)
17-03-18 06:50:37.464 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171797 mm (DAC = 37529)
17-03-18 06:50:37.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.464 -07 000000430 INF: FPGA: Recv ZSGSRD 36037
17-03-18 06:50:37.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:50:37.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.474 -07 000000461 INF: FPGA: Recv ZSGSRD 36036
17-03-18 06:50:37.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.484 -07 000000474 INF: FPGA: Recv ZSGSRD 36034
17-03-18 06:50:37.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.494 -07 000000430 INF: FPGA: Recv ZSGSRD 36037
17-03-18 06:50:37.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.504 -07 000000462 INF: FPGA: Recv ZSGSRD 36030
17-03-18 06:50:37.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.514 -07 000000480 INF: FPGA: Recv ZSGSRD 36031
17-03-18 06:50:37.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.524 -07 000000462 INF: FPGA: Recv ZSGSRD 36033
17-03-18 06:50:37.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.534 -07 000000606 INF: FPGA: Recv ZSGSRD 36035
17-03-18 06:50:37.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.544 -07 000000480 INF: FPGA: Recv ZSGSRD 36030
17-03-18 06:50:37.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.554 -07 000000606 INF: FPGA: Recv ZSGSRD 36033
17-03-18 06:50:37.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:37.564 -07 000000480 INF: FPGA: Recv ZPIEZORD 31940
17-03-18 06:50:37.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.574 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -9.0 V.
17-03-18 06:50:37.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36034 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36034 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36030 (-170.9 uncal um), Max = 36037 (-171.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:50:37.574 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36034, posNoise = 3, negNoise = 4
17-03-18 06:50:37.574 -07 000000610 INF: Z Motor: After move to -0.171797, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:37.574 -07 000000610 INF: Z Motor: Settle wait time = 1449 ms, measure time = 107 ms (allowed 150 ms), total time = 1556 ms
17-03-18 06:50:37.574 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:50:37.624 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 06:50:37.624 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:50:37.624 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.171813412327349. ----------
17-03-18 06:50:37.624 -07 000000610 INF: Cycle	154	Tile	3	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:50:37.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37353, sync = True, waitForSettling = True)
17-03-18 06:50:37.624 -07 000000610 INF: Z Motor: Moving to -0.170991 mm, started at -0.171813 mm, distance = 0.82 um
17-03-18 06:50:37.624 -07 000000610 INF: FPGA: Xmit ZDACW 37353\n [Z Motor]
17-03-18 06:50:37.624 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:50:37.634 -07 000000610 INF: FPGA: 'ZDACW 37353' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:50:37.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:37.634 -07 000000501 INF: FPGA: Recv ZDACR 37353
17-03-18 06:50:37.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:50:37.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.794 -07 000000462 INF: FPGA: Recv ZSGSRD 35908
17-03-18 06:50:37.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:37.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.804 -07 000000461 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:50:37.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.814 -07 000000462 INF: FPGA: Recv ZSGSRD 35904
17-03-18 06:50:37.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.824 -07 000000474 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:50:37.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.834 -07 000000611 INF: FPGA: Recv ZSGSRD 35905
17-03-18 06:50:37.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.844 -07 000000474 INF: FPGA: Recv ZSGSRD 35913
17-03-18 06:50:37.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.854 -07 000000611 INF: FPGA: Recv ZSGSRD 35903
17-03-18 06:50:37.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.864 -07 000000461 INF: FPGA: Recv ZSGSRD 35909
17-03-18 06:50:37.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.874 -07 000000430 INF: FPGA: Recv ZSGSRD 35905
17-03-18 06:50:37.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:37.884 -07 000000461 INF: FPGA: Recv ZSGSRD 35910
17-03-18 06:50:37.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:37.894 -07 000000611 INF: FPGA: Recv ZPIEZORD 31773
17-03-18 06:50:37.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:37.904 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.1 V.
17-03-18 06:50:37.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35907 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35907 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35903 (-170.1 uncal um), Max = 35913 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:50:37.904 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35907, posNoise = 6, negNoise = 4
17-03-18 06:50:37.904 -07 000000610 INF: Z Motor: After move to -0.170991, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:37.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:50:37.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:50:37.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:50:37.904 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:50:37.904 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:50:37.904 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:50:37.904 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:50:37.904 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:50:37.904 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:50:37.904 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:50:37.904 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:50:37.904 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:50:37.904 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:50:37.914 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:50:37.914 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:50:37.914 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:50:37.914 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:50:37.924 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:50:37.924 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:50:37.924 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:50:37.924 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:50:37.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37529 150\n [Camera]
17-03-18 06:50:37.994 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.023489,
17-03-18 06:50:38.124 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:50:38.594 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:50:38.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:50:38.594 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:38.594 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:50:38.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:50:38.604 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:38.604 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:38.604 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 06:50:38.604 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:38.604 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:50:38.784 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37529 853
17-03-18 06:50:38.934 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:50:38.974 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:50:38.974 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:50:38.974 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:38.984 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:50:38.984 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:50:38.984 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:50:38.984 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:38.984 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:50:38.984 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:50:38.984 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:50:39.164 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:50:39.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:50:39.164 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:39.164 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:50:39.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:50:39.164 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:39.174 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:39.174 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:50:39.174 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:39.174 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) start.
17-03-18 06:50:39.354 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:50:39.354 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:50:39.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37529 150' command took 2 ms to send, 1416 ms to get response, and 1427 ms overall
17-03-18 06:50:39.354 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171251
17-03-18 06:50:39.354 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17125 mm
17-03-18 06:50:39.354 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:50:39.364 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37410, sync = True, waitForSettling = False)
17-03-18 06:50:39.364 -07 000000455 INF: Z Motor: Moving to -0.171252 mm, started at -0.170998 mm, distance = -0.25 um
17-03-18 06:50:39.364 -07 000000455 INF: FPGA: Xmit ZDACW 37410\n [Z Motor]
17-03-18 06:50:39.364 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:50:39.364 -07 000000012 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 06:50:39.364 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:50:39.374 -07 000000455 INF: FPGA: 'ZDACW 37410' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:50:39.374 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:39.374 -07 000000480 INF: FPGA: Recv ZDACR 37410
17-03-18 06:50:39.384 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:39.384 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:39.384 -07 000000455 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-18 06:50:39.384 -07 000000447 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:50:39.394 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:50:39.394 -07 000000012 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:39.394 -07 000000012 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:50:39.394 -07 000000012 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:50:39.394 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:50:39.554 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:50:39.554 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:50:39.554 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:39.554 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:50:39.554 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:50:39.554 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:39.554 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:39.554 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:39.554 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:50:39.564 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:50:39.764 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:50:39.764 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 06:50:39.824 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:39.824 -07 000000474 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:50:39.834 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:50:39.834 -07 000000012 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:39.834 -07 000000012 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:50:39.834 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.223 mm/sec
17-03-18 06:50:40.784 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:40.784 -07 000000585 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:50:40.794 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:40.794 -07 000000012 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:40.824 -07 000000012 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:50:40.824 -07 000000012 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:50:40.824 -07 000000012 INF: Y Motor: Moved to 62.3945 after 1458 ms (table move)
17-03-18 06:50:40.824 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171252 mm (DAC = 37410)
17-03-18 06:50:40.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:40.824 -07 000000012 INF: FPGA: Recv ZSGSRD 35950
17-03-18 06:50:40.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:50:40.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:40.834 -07 000000430 INF: FPGA: Recv ZSGSRD 35949
17-03-18 06:50:40.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:40.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:40.844 -07 000000501 INF: FPGA: Recv ZSGSRD 35946
17-03-18 06:50:40.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:40.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:40.854 -07 000000501 INF: FPGA: Recv ZSGSRD 35942
17-03-18 06:50:40.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:40.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:40.864 -07 000000455 INF: FPGA: Recv ZSGSRD 35942
17-03-18 06:50:40.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:40.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:40.874 -07 000000480 INF: FPGA: Recv ZSGSRD 35943
17-03-18 06:50:40.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:40.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:40.884 -07 000000455 INF: FPGA: Recv ZSGSRD 35954
17-03-18 06:50:40.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:40.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:40.894 -07 000000430 INF: FPGA: Recv ZSGSRD 35951
17-03-18 06:50:40.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:40.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:40.904 -07 000000474 INF: FPGA: Recv ZSGSRD 35948
17-03-18 06:50:40.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:40.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:40.914 -07 000000585 INF: FPGA: Recv ZSGSRD 35949
17-03-18 06:50:40.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:40.924 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:40.924 -07 000000455 INF: FPGA: Recv ZPIEZORD 31854
17-03-18 06:50:40.934 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:40.934 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -9.0 V.
17-03-18 06:50:40.934 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35947 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35948 (-170.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35942 (-170.3 uncal um), Max = 35954 (-170.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:50:40.934 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35947, posNoise = 7, negNoise = 5
17-03-18 06:50:40.934 -07 000000610 INF: Z Motor: After move to -0.171252, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:40.934 -07 000000610 INF: Z Motor: Settle wait time = 1463 ms, measure time = 104 ms (allowed 150 ms), total time = 1567 ms
17-03-18 06:50:40.934 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:50:40.984 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 06:50:40.984 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:50:40.984 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.171254505871016. ----------
17-03-18 06:50:40.984 -07 000000610 INF: Cycle	154	Tile	4	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:50:40.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37233, sync = True, waitForSettling = True)
17-03-18 06:50:40.984 -07 000000610 INF: Z Motor: Moving to -0.170442 mm, started at -0.171255 mm, distance = 0.81 um
17-03-18 06:50:40.984 -07 000000610 INF: FPGA: Xmit ZDACW 37233\n [Z Motor]
17-03-18 06:50:40.984 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:50:40.994 -07 000000610 INF: FPGA: 'ZDACW 37233' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:50:40.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:40.994 -07 000000455 INF: FPGA: Recv ZDACR 37233
17-03-18 06:50:41.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:41.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:50:41.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:41.154 -07 000000480 INF: FPGA: Recv ZSGSRD 35815
17-03-18 06:50:41.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:41.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:41.164 -07 000000585 INF: FPGA: Recv ZSGSRD 35826
17-03-18 06:50:41.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:41.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:41.174 -07 000000455 INF: FPGA: Recv ZSGSRD 35815
17-03-18 06:50:41.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:41.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:41.184 -07 000000501 INF: FPGA: Recv ZSGSRD 35818
17-03-18 06:50:41.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:41.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:41.194 -07 000000480 INF: FPGA: Recv ZSGSRD 35828
17-03-18 06:50:41.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:41.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:41.204 -07 000000455 INF: FPGA: Recv ZSGSRD 35824
17-03-18 06:50:41.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:41.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:41.214 -07 000000430 INF: FPGA: Recv ZSGSRD 35825
17-03-18 06:50:41.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:41.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:41.224 -07 000000585 INF: FPGA: Recv ZSGSRD 35817
17-03-18 06:50:41.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:41.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:41.234 -07 000000447 INF: FPGA: Recv ZSGSRD 35818
17-03-18 06:50:41.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:41.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:41.244 -07 000000474 INF: FPGA: Recv ZSGSRD 35827
17-03-18 06:50:41.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:41.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:41.254 -07 000000606 INF: FPGA: Recv ZPIEZORD 31664
17-03-18 06:50:41.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:41.264 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.681 V. Piezo Error = -9.2 V.
17-03-18 06:50:41.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35821 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35821 (-169.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35815 (-169.5 uncal um), Max = 35828 (-169.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:50:41.264 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35821, posNoise = 7, negNoise = 6
17-03-18 06:50:41.264 -07 000000610 INF: Z Motor: After move to -0.170442, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:41.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:50:41.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:50:41.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:50:41.264 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:50:41.264 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:50:41.264 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:50:41.264 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:50:41.264 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:50:41.264 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:50:41.264 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:50:41.264 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:50:41.264 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:50:41.264 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:50:41.264 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:50:41.264 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:50:41.274 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:50:41.274 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:50:41.284 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 06:50:41.284 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:50:41.284 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:50:41.284 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:50:41.284 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37410 150\n [Camera]
17-03-18 06:50:41.484 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:50:41.894 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:50:41.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:50:41.954 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:50:41.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:50:41.954 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:41.954 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:41.954 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:50:41.954 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:50:41.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:50:41.964 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:41.964 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:41.964 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:50:42.144 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37410 853
17-03-18 06:50:42.294 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:50:42.334 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:50:42.334 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:50:42.334 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:42.334 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:50:42.334 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:50:42.334 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:42.334 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:42.344 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:42.344 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:50:42.344 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:50:42.524 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:50:42.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:50:42.524 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:42.524 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:42.524 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:50:42.524 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:50:42.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:50:42.524 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:42.524 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:42.524 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:50:42.714 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-18 06:50:42.714 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:50:42.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37410 150' command took 2 ms to send, 1416 ms to get response, and 1428 ms overall
17-03-18 06:50:42.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:50:42.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.170445055141154. ------
17-03-18 06:50:42.724 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17700 mm
17-03-18 06:50:42.724 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:50:42.724 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:50:42.724 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:50:42.724 -07 000000590 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 06:50:42.724 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38666, sync = True, waitForSettling = False)
17-03-18 06:50:42.724 -07 000000455 INF: Z Motor: Moving to -0.177002 mm, started at -0.170445 mm, distance = -6.56 um
17-03-18 06:50:42.724 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:50:42.734 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:50:42.734 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:42.734 -07 000000480 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:50:42.744 -07 000000455 INF: FPGA: Xmit ZDACW 38666\n [Z Motor]
17-03-18 06:50:42.744 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:50:42.744 -07 000000590 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:42.744 -07 000000590 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:50:42.744 -07 000000590 INF: Y Motor: Moving 1341 steps-18
17-03-18 06:50:42.744 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:50:42.754 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:50:42.754 -07 000000455 INF: FPGA: 'ZDACW 38666' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:50:42.764 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:50:42.774 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:42.774 -07 000000585 INF: FPGA: Recv ZDACR 38666
17-03-18 06:50:42.784 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:50:42.784 -07 000000455 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 06:50:42.914 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:50:42.914 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:50:42.914 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:42.914 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:50:42.914 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:50:42.914 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:42.914 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:42.914 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:50:42.914 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:42.924 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:50:42.954 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:50:42.954 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:50:43.134 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 06:50:43.134 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:50:43.194 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:43.194 -07 000000012 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:50:43.204 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:50:43.204 -07 000000590 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:43.204 -07 000000590 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:50:43.204 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 06:50:43.364 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.99219,
17-03-18 06:50:44.154 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:44.154 -07 000000430 INF: FPGA: Recv YRDPOS 129479
17-03-18 06:50:44.164 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:44.164 -07 000000590 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:44.194 -07 000000590 INF: Y Motor: After move to 63.232609, error = -0.010441, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:50:44.194 -07 000000590 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:50:44.194 -07 000000590 INF: Y Motor: Moved to 63.2222 after 1469 ms (table move)
17-03-18 06:50:44.194 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177002 mm (DAC = 38666)
17-03-18 06:50:44.194 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:44.204 -07 000000590 INF: FPGA: Recv ZSGSRD 36846
17-03-18 06:50:44.204 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:50:44.204 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:44.204 -07 000000590 INF: FPGA: Recv ZSGSRD 36845
17-03-18 06:50:44.214 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:44.214 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:44.214 -07 000000590 INF: FPGA: Recv ZSGSRD 36842
17-03-18 06:50:44.224 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:44.224 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:44.224 -07 000000590 INF: FPGA: Recv ZSGSRD 36841
17-03-18 06:50:44.234 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:44.234 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:44.234 -07 000000590 INF: FPGA: Recv ZSGSRD 36845
17-03-18 06:50:44.244 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:44.244 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:44.244 -07 000000480 INF: FPGA: Recv ZSGSRD 36840
17-03-18 06:50:44.254 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:44.254 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:44.254 -07 000000444 INF: FPGA: Recv ZSGSRD 36838
17-03-18 06:50:44.264 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:44.264 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:44.264 -07 000000444 INF: FPGA: Recv ZSGSRD 36841
17-03-18 06:50:44.274 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:44.274 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:44.274 -07 000000480 INF: FPGA: Recv ZSGSRD 36844
17-03-18 06:50:44.284 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:44.284 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:44.284 -07 000000012 INF: FPGA: Recv ZSGSRD 36847
17-03-18 06:50:44.294 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:44.294 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:44.294 -07 000000444 INF: FPGA: Recv ZPIEZORD 33039
17-03-18 06:50:44.304 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:44.304 -07 000000447 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.900 V. Piezo Error = -8.4 V.
17-03-18 06:50:44.304 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36843 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36843 (-176.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36838 (-176.1 uncal um), Max = 36847 (-176.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:50:44.304 -07 000000447 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36843, posNoise = 4, negNoise = 5
17-03-18 06:50:44.304 -07 000000447 INF: Z Motor: After move to -0.177002, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:44.304 -07 000000447 INF: Z Motor: Settle wait time = 1472 ms, measure time = 103 ms (allowed 150 ms), total time = 1575 ms
17-03-18 06:50:44.304 -07 000000447 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:50:44.354 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 06:50:44.354 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:50:44.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:50:44.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:50:44.354 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:50:44.354 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:50:44.354 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:50:44.354 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:50:44.354 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:50:44.354 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:50:44.364 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:50:44.364 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:50:44.374 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:50:44.374 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:50:44.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:50:44.424 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:50:44.724 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:50:44.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:50:44.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:50:44.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-18 06:50:44.754 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:50:44.764 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 06:50:44.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:50:44.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:50:44.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:44.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:50:44.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:50:44.864 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:50:44.864 -07 000000606 INF: Autofocus start
17-03-18 06:50:44.864 -07 000000606 INF: MeasureProfile start
17-03-18 06:50:44.864 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:50:44.874 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:50:44.874 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:50:44.874 -07 000000606 INF: MeasureProfile done
17-03-18 06:50:44.874 -07 000000606 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:50:44.874 -07 000000606 INF: Autofocus finished
17-03-18 06:50:45.074 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:50:45.074 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 06:50:45.084 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22216796875, Z-position -0.177010599950034. ----------
17-03-18 06:50:45.084 -07 000000610 INF: Cycle	154	Tile	5	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:50:45.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37163, sync = True, waitForSettling = True)
17-03-18 06:50:45.084 -07 000000610 INF: Z Motor: Moving to -0.170121 mm, started at -0.177011 mm, distance = 6.89 um
17-03-18 06:50:45.084 -07 000000610 INF: FPGA: Xmit ZDACW 37163\n [Z Motor]
17-03-18 06:50:45.084 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:50:45.094 -07 000000610 INF: FPGA: 'ZDACW 37163' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:50:45.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:45.094 -07 000000444 INF: FPGA: Recv ZDACR 37163
17-03-18 06:50:45.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:45.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:50:45.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:45.254 -07 000000585 INF: FPGA: Recv ZSGSRD 35769
17-03-18 06:50:45.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:45.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:45.264 -07 000000606 INF: FPGA: Recv ZSGSRD 35769
17-03-18 06:50:45.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:45.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:45.274 -07 000000480 INF: FPGA: Recv ZSGSRD 35769
17-03-18 06:50:45.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:45.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:45.284 -07 000000501 INF: FPGA: Recv ZSGSRD 35765
17-03-18 06:50:45.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:45.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:45.294 -07 000000590 INF: FPGA: Recv ZSGSRD 35770
17-03-18 06:50:45.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:45.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:45.304 -07 000000606 INF: FPGA: Recv ZSGSRD 35777
17-03-18 06:50:45.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:45.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:45.314 -07 000000474 INF: FPGA: Recv ZSGSRD 35776
17-03-18 06:50:45.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:45.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:45.324 -07 000000012 INF: FPGA: Recv ZSGSRD 35771
17-03-18 06:50:45.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:45.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:45.334 -07 000000590 INF: FPGA: Recv ZSGSRD 35766
17-03-18 06:50:45.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:45.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:45.344 -07 000000501 INF: FPGA: Recv ZSGSRD 35773
17-03-18 06:50:45.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:45.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:45.354 -07 000000474 INF: FPGA: Recv ZPIEZORD 31613
17-03-18 06:50:45.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:45.364 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.671 V. Piezo Error = -9.2 V.
17-03-18 06:50:45.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35770 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35770 (-169.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35765 (-169.2 uncal um), Max = 35777 (-169.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:50:45.364 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35770, posNoise = 7, negNoise = 5
17-03-18 06:50:45.364 -07 000000610 INF: Z Motor: After move to -0.170121, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:45.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:50:45.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:50:45.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:50:45.364 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:50:45.364 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:50:45.364 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:50:45.364 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:50:45.364 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:50:45.364 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:50:45.364 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:50:45.364 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:50:45.364 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:50:45.364 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:50:45.374 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:50:45.374 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:50:45.374 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:50:45.374 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:50:45.374 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:50:45.384 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:50:45.384 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:50:45.384 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:50:45.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37340 150\n [Camera]
17-03-18 06:50:45.584 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:50:46.054 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:50:46.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:50:46.054 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:46.054 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:46.054 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:50:46.054 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:50:46.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:50:46.054 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:46.054 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:46.054 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:50:46.244 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37340 853
17-03-18 06:50:46.394 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:50:46.434 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:50:46.434 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:50:46.434 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:46.434 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:50:46.434 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:50:46.434 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:46.444 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:46.444 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:50:46.444 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:46.454 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:50:46.624 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:50:46.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:50:46.624 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:46.624 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:50:46.624 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:46.624 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 06:50:46.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:50:46.624 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:46.624 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:46.624 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 06:50:46.814 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:50:46.814 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:50:46.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37340 150' command took 2 ms to send, 1422 ms to get response, and 1427 ms overall
17-03-18 06:50:46.814 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.170398
17-03-18 06:50:46.814 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17040 mm
17-03-18 06:50:46.814 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:50:46.814 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:50:46.814 -07 000000012 INF: Y Motor: Moving to 64.0626 mm, started at 63.2222 mm, delta = 0.8404 mm
17-03-18 06:50:46.814 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:46.814 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37223, sync = True, waitForSettling = False)
17-03-18 06:50:46.814 -07 000000501 INF: Z Motor: Moving to -0.170396 mm, started at -0.170117 mm, distance = -0.28 um
17-03-18 06:50:46.814 -07 000000444 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:50:46.824 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:50:46.824 -07 000000012 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:46.824 -07 000000501 INF: FPGA: Xmit ZDACW 37223\n [Z Motor]
17-03-18 06:50:46.824 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:50:46.824 -07 000000012 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:50:46.824 -07 000000012 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:50:46.834 -07 000000501 INF: FPGA: 'ZDACW 37223' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:50:46.834 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:46.834 -07 000000585 INF: FPGA: Recv ZDACR 37223
17-03-18 06:50:46.844 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:50:46.844 -07 000000501 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:46.844 -07 000000501 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 06:50:46.894 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:50:46.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:50:47.004 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 06:50:47.004 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:50:47.004 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:47.014 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:50:47.014 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:50:47.014 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:47.014 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:47.014 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:47.014 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:50:47.024 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:50:47.214 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:50:47.214 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 06:50:47.274 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:47.274 -07 000000590 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:50:47.284 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:47.284 -07 000000012 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:47.284 -07 000000012 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 06:50:47.284 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.133 mm/sec
17-03-18 06:50:48.234 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:48.234 -07 000000444 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:50:48.244 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:48.244 -07 000000012 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:48.274 -07 000000012 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:50:48.274 -07 000000012 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:50:48.274 -07 000000012 INF: Y Motor: Moved to 64.0557 after 1454 ms (table move)
17-03-18 06:50:48.274 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170396 mm (DAC = 37223)
17-03-18 06:50:48.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.274 -07 000000444 INF: FPGA: Recv ZSGSRD 35813
17-03-18 06:50:48.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:50:48.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.284 -07 000000606 INF: FPGA: Recv ZSGSRD 35816
17-03-18 06:50:48.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.294 -07 000000606 INF: FPGA: Recv ZSGSRD 35812
17-03-18 06:50:48.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.304 -07 000000606 INF: FPGA: Recv ZSGSRD 35812
17-03-18 06:50:48.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.314 -07 000000606 INF: FPGA: Recv ZSGSRD 35812
17-03-18 06:50:48.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:48.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.324 -07 000000012 INF: FPGA: Recv ZSGSRD 35816
17-03-18 06:50:48.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.334 -07 000000606 INF: FPGA: Recv ZSGSRD 35819
17-03-18 06:50:48.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.344 -07 000000611 INF: FPGA: Recv ZSGSRD 35814
17-03-18 06:50:48.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.354 -07 000000611 INF: FPGA: Recv ZSGSRD 35821
17-03-18 06:50:48.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.364 -07 000000611 INF: FPGA: Recv ZSGSRD 35812
17-03-18 06:50:48.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:48.374 -07 000000611 INF: FPGA: Recv ZPIEZORD 31653
17-03-18 06:50:48.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.384 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -9.2 V.
17-03-18 06:50:48.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35815 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35814 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35812 (-169.5 uncal um), Max = 35821 (-169.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:50:48.384 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35815, posNoise = 6, negNoise = 3
17-03-18 06:50:48.384 -07 000000610 INF: Z Motor: After move to -0.170396, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:48.384 -07 000000610 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms
17-03-18 06:50:48.384 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:50:48.434 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 06:50:48.434 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:50:48.434 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.170406509868304. ----------
17-03-18 06:50:48.434 -07 000000610 INF: Cycle	154	Tile	6	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:50:48.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37047, sync = True, waitForSettling = True)
17-03-18 06:50:48.434 -07 000000610 INF: Z Motor: Moving to -0.169590 mm, started at -0.170407 mm, distance = 0.82 um
17-03-18 06:50:48.434 -07 000000610 INF: FPGA: Xmit ZDACW 37047\n [Z Motor]
17-03-18 06:50:48.434 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:50:48.444 -07 000000610 INF: FPGA: 'ZDACW 37047' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:50:48.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:48.444 -07 000000480 INF: FPGA: Recv ZDACR 37047
17-03-18 06:50:48.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:50:48.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.604 -07 000000590 INF: FPGA: Recv ZSGSRD 35689
17-03-18 06:50:48.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:48.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.614 -07 000000444 INF: FPGA: Recv ZSGSRD 35694
17-03-18 06:50:48.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.624 -07 000000590 INF: FPGA: Recv ZSGSRD 35680
17-03-18 06:50:48.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.634 -07 000000444 INF: FPGA: Recv ZSGSRD 35687
17-03-18 06:50:48.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.644 -07 000000474 INF: FPGA: Recv ZSGSRD 35691
17-03-18 06:50:48.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.654 -07 000000474 INF: FPGA: Recv ZSGSRD 35689
17-03-18 06:50:48.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.664 -07 000000474 INF: FPGA: Recv ZSGSRD 35693
17-03-18 06:50:48.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.674 -07 000000474 INF: FPGA: Recv ZSGSRD 35690
17-03-18 06:50:48.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.684 -07 000000590 INF: FPGA: Recv ZSGSRD 35692
17-03-18 06:50:48.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:48.694 -07 000000611 INF: FPGA: Recv ZSGSRD 35688
17-03-18 06:50:48.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:48.704 -07 000000501 INF: FPGA: Recv ZPIEZORD 31511
17-03-18 06:50:48.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:48.714 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.653 V. Piezo Error = -9.2 V.
17-03-18 06:50:48.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35689 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35690 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35680 (-168.7 uncal um), Max = 35694 (-168.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:50:48.714 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35689, posNoise = 5, negNoise = 9
17-03-18 06:50:48.714 -07 000000610 INF: Z Motor: After move to -0.169590, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:48.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:50:48.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:50:48.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:50:48.714 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:50:48.714 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:50:48.714 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:50:48.714 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:50:48.714 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:50:48.714 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:50:48.714 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:50:48.714 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:50:48.714 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:50:48.714 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:50:48.724 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:50:48.724 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:50:48.724 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:50:48.724 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:50:48.724 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:50:48.724 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:50:48.724 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:50:48.724 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:50:48.734 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.98264,
17-03-18 06:50:48.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37223 150\n [Camera]
17-03-18 06:50:48.944 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:50:49.414 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:50:49.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:50:49.414 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:49.414 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:49.414 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 06:50:49.424 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:50:49.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:50:49.424 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:49.554 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:49.554 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:50:49.614 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37223 856
17-03-18 06:50:49.764 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:50:49.804 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:50:49.804 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:50:49.804 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:49.804 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:50:49.804 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:50:49.924 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:50:49.924 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:50:49.924 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:49.934 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:50:49.934 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-18 06:50:49.984 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:50:49.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:50:49.984 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:49.984 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:50:49.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:50:49.994 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:49.994 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:49.994 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:50:49.994 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:49.994 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:50:50.174 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:50:50.174 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:50:50.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37223 150' command took 2 ms to send, 1418 ms to get response, and 1443 ms overall
17-03-18 06:50:50.184 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.169935
17-03-18 06:50:50.184 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.16994 mm
17-03-18 06:50:50.184 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:50:50.184 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:50:50.184 -07 000000585 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 06:50:50.184 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37122, sync = True, waitForSettling = False)
17-03-18 06:50:50.184 -07 000000462 INF: Z Motor: Moving to -0.169934 mm, started at -0.169597 mm, distance = -0.34 um
17-03-18 06:50:50.184 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:50.184 -07 000000611 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:50:50.194 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:50:50.194 -07 000000585 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:50.194 -07 000000585 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:50:50.194 -07 000000585 INF: Y Motor: Moving 1339 steps-14
17-03-18 06:50:50.194 -07 000000462 INF: FPGA: Xmit ZDACW 37122\n [Z Motor]
17-03-18 06:50:50.194 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:50:50.204 -07 000000462 INF: FPGA: 'ZDACW 37122' command took 3 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:50:50.204 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:50:50.214 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:50.214 -07 000000611 INF: FPGA: Recv ZDACR 37122
17-03-18 06:50:50.224 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:50:50.224 -07 000000462 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:50:50.374 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:50:50.374 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:50:50.374 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:50.374 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:50:50.374 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:50:50.374 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:50.374 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:50:50.374 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:50:50.374 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:50:50.384 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:50:50.574 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 06:50:50.574 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 06:50:50.634 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:50.634 -07 000000606 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:50:50.644 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:50:50.644 -07 000000585 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:50.644 -07 000000585 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:50:50.644 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-18 06:50:51.594 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:51.594 -07 000000461 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:50:51.604 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:51.604 -07 000000585 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:51.634 -07 000000585 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:50:51.634 -07 000000585 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:50:51.634 -07 000000585 INF: Y Motor: Moved to 64.8774 after 1448 ms (table move)
17-03-18 06:50:51.634 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169934 mm (DAC = 37122)
17-03-18 06:50:51.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.634 -07 000000590 INF: FPGA: Recv ZSGSRD 35739
17-03-18 06:50:51.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:50:51.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.644 -07 000000462 INF: FPGA: Recv ZSGSRD 35742
17-03-18 06:50:51.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:51.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.654 -07 000000606 INF: FPGA: Recv ZSGSRD 35742
17-03-18 06:50:51.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:51.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.664 -07 000000462 INF: FPGA: Recv ZSGSRD 35745
17-03-18 06:50:51.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:51.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.674 -07 000000480 INF: FPGA: Recv ZSGSRD 35745
17-03-18 06:50:51.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:51.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.684 -07 000000590 INF: FPGA: Recv ZSGSRD 35737
17-03-18 06:50:51.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:51.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.694 -07 000000606 INF: FPGA: Recv ZSGSRD 35740
17-03-18 06:50:51.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:51.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.704 -07 000000480 INF: FPGA: Recv ZSGSRD 35743
17-03-18 06:50:51.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:51.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.714 -07 000000590 INF: FPGA: Recv ZSGSRD 35747
17-03-18 06:50:51.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:51.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.724 -07 000000455 INF: FPGA: Recv ZSGSRD 35744
17-03-18 06:50:51.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:51.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:51.734 -07 000000461 INF: FPGA: Recv ZPIEZORD 31567
17-03-18 06:50:51.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:51.744 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -9.2 V.
17-03-18 06:50:51.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35742 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35742 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35737 (-169.0 uncal um), Max = 35747 (-169.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:50:51.744 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35742, posNoise = 5, negNoise = 5
17-03-18 06:50:51.744 -07 000000610 INF: Z Motor: After move to -0.169934, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:51.744 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 104 ms (allowed 150 ms), total time = 1555 ms
17-03-18 06:50:51.744 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:50:51.794 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 06:50:51.794 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:50:51.794 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.169937542381955. ----------
17-03-18 06:50:51.794 -07 000000610 INF: Cycle	154	Tile	7	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:50:51.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36946, sync = True, waitForSettling = True)
17-03-18 06:50:51.794 -07 000000610 INF: Z Motor: Moving to -0.169128 mm, started at -0.169938 mm, distance = 0.81 um
17-03-18 06:50:51.794 -07 000000610 INF: FPGA: Xmit ZDACW 36946\n [Z Motor]
17-03-18 06:50:51.794 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:50:51.804 -07 000000610 INF: FPGA: 'ZDACW 36946' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:50:51.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:51.804 -07 000000455 INF: FPGA: Recv ZDACR 36946
17-03-18 06:50:51.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:51.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:50:51.894 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:50:51.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:50:51.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.964 -07 000000479 INF: FPGA: Recv ZSGSRD 35623
17-03-18 06:50:51.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:51.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.974 -07 000000606 INF: FPGA: Recv ZSGSRD 35613
17-03-18 06:50:51.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:51.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.984 -07 000000474 INF: FPGA: Recv ZSGSRD 35620
17-03-18 06:50:51.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:51.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:51.994 -07 000000479 INF: FPGA: Recv ZSGSRD 35613
17-03-18 06:50:52.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:52.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:52.004 -07 000000462 INF: FPGA: Recv ZSGSRD 35613
17-03-18 06:50:52.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:52.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:52.014 -07 000000455 INF: FPGA: Recv ZSGSRD 35615
17-03-18 06:50:52.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:52.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:52.024 -07 000000474 INF: FPGA: Recv ZSGSRD 35620
17-03-18 06:50:52.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:52.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:52.034 -07 000000590 INF: FPGA: Recv ZSGSRD 35618
17-03-18 06:50:52.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:52.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:52.044 -07 000000606 INF: FPGA: Recv ZSGSRD 35616
17-03-18 06:50:52.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:52.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:52.054 -07 000000590 INF: FPGA: Recv ZSGSRD 35621
17-03-18 06:50:52.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:52.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:52.064 -07 000000462 INF: FPGA: Recv ZPIEZORD 31374
17-03-18 06:50:52.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:52.074 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.638 V. Piezo Error = -9.4 V.
17-03-18 06:50:52.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35617 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35617 (-168.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35613 (-168.2 uncal um), Max = 35623 (-168.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:50:52.074 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35617, posNoise = 6, negNoise = 4
17-03-18 06:50:52.074 -07 000000610 INF: Z Motor: After move to -0.169128, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:52.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:50:52.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:50:52.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:50:52.074 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:50:52.074 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:50:52.074 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:50:52.074 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:50:52.074 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:50:52.074 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:50:52.074 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:50:52.074 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:50:52.074 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:50:52.074 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:50:52.074 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:50:52.074 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:50:52.074 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:50:52.084 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:50:52.094 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:50:52.094 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:50:52.094 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:50:52.094 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:50:52.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37122 150\n [Camera]
17-03-18 06:50:52.294 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:50:52.764 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:50:52.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:50:52.764 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:52.774 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:50:52.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:50:52.774 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:52.774 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:52.774 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) start.
17-03-18 06:50:52.774 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:52.774 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:50:52.954 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37122 853
17-03-18 06:50:53.114 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:50:53.144 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:50:53.144 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 06:50:53.144 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:53.144 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:50:53.144 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:50:53.144 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:53.144 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:53.154 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:50:53.154 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:53.154 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:50:53.334 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:50:53.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:50:53.334 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:53.454 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:50:53.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:50:53.464 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:53.464 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:53.464 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 06:50:53.464 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:53.464 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:50:53.524 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-18 06:50:53.524 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:50:53.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37122 150' command took 2 ms to send, 1416 ms to get response, and 1427 ms overall
17-03-18 06:50:53.524 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.169870
17-03-18 06:50:53.524 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.16987 mm
17-03-18 06:50:53.524 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:50:53.534 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37108, sync = True, waitForSettling = False)
17-03-18 06:50:53.534 -07 000000461 INF: Z Motor: Moving to -0.169870 mm, started at -0.169135 mm, distance = -0.74 um
17-03-18 06:50:53.534 -07 000000461 INF: FPGA: Xmit ZDACW 37108\n [Z Motor]
17-03-18 06:50:53.534 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:50:53.534 -07 000000608 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 06:50:53.534 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:50:53.544 -07 000000461 INF: FPGA: 'ZDACW 37108' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:50:53.544 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:53.544 -07 000000480 INF: FPGA: Recv ZDACR 37108
17-03-18 06:50:53.554 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:53.554 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:53.554 -07 000000461 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-18 06:50:53.554 -07 000000606 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:50:53.564 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:50:53.564 -07 000000608 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:53.564 -07 000000608 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:50:53.564 -07 000000608 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:50:53.564 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:50:53.844 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:50:53.844 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:50:53.844 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:53.844 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:50:53.844 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:50:53.844 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:53.844 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:50:53.844 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 06:50:53.844 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:53.864 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:50:53.934 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:50:53.934 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 06:50:53.994 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:53.994 -07 000000606 INF: FPGA: Recv YRDPOS 134579
17-03-18 06:50:54.004 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:54.004 -07 000000608 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:54.004 -07 000000608 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:50:54.004 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.236 mm/sec
17-03-18 06:50:54.114 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.014009,
17-03-18 06:50:54.954 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:54.954 -07 000000012 INF: FPGA: Recv YRDPOS 134579
17-03-18 06:50:54.964 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:54.964 -07 000000608 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:54.994 -07 000000608 INF: Y Motor: After move to 65.722610, error = -0.010208, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:50:55.004 -07 000000608 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:50:55.004 -07 000000608 INF: Y Motor: Moved to 65.7124 after 1466 ms (table move)
17-03-18 06:50:55.004 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169870 mm (DAC = 37108)
17-03-18 06:50:55.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.004 -07 000000606 INF: FPGA: Recv ZSGSRD 35732
17-03-18 06:50:55.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:50:55.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.014 -07 000000430 INF: FPGA: Recv ZSGSRD 35733
17-03-18 06:50:55.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.024 -07 000000480 INF: FPGA: Recv ZSGSRD 35726
17-03-18 06:50:55.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.034 -07 000000474 INF: FPGA: Recv ZSGSRD 35733
17-03-18 06:50:55.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.044 -07 000000608 INF: FPGA: Recv ZSGSRD 35733
17-03-18 06:50:55.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.054 -07 000000444 INF: FPGA: Recv ZSGSRD 35737
17-03-18 06:50:55.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.064 -07 000000479 INF: FPGA: Recv ZSGSRD 35736
17-03-18 06:50:55.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.074 -07 000000608 INF: FPGA: Recv ZSGSRD 35731
17-03-18 06:50:55.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.084 -07 000000606 INF: FPGA: Recv ZSGSRD 35728
17-03-18 06:50:55.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.094 -07 000000611 INF: FPGA: Recv ZSGSRD 35731
17-03-18 06:50:55.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.104 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:55.104 -07 000000444 INF: FPGA: Recv ZPIEZORD 31541
17-03-18 06:50:55.114 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.114 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.662 V. Piezo Error = -9.2 V.
17-03-18 06:50:55.114 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35732 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35732 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35726 (-169.0 uncal um), Max = 35737 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:50:55.114 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35732, posNoise = 5, negNoise = 6
17-03-18 06:50:55.114 -07 000000610 INF: Z Motor: After move to -0.169870, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:55.114 -07 000000610 INF: Z Motor: Settle wait time = 1469 ms, measure time = 108 ms (allowed 150 ms), total time = 1577 ms
17-03-18 06:50:55.114 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 06:50:55.164 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 06:50:55.164 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:50:55.164 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71240234375, Z-position -0.169873300260537. ----------
17-03-18 06:50:55.164 -07 000000610 INF: Cycle	154	Tile	8	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:50:55.164 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36931, sync = True, waitForSettling = True)
17-03-18 06:50:55.164 -07 000000610 INF: Z Motor: Moving to -0.169059 mm, started at -0.169873 mm, distance = 0.81 um
17-03-18 06:50:55.164 -07 000000610 INF: FPGA: Xmit ZDACW 36931\n [Z Motor]
17-03-18 06:50:55.164 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:50:55.174 -07 000000610 INF: FPGA: 'ZDACW 36931' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:50:55.174 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:55.174 -07 000000447 INF: FPGA: Recv ZDACR 36931
17-03-18 06:50:55.184 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.184 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:50:55.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.334 -07 000000474 INF: FPGA: Recv ZSGSRD 35604
17-03-18 06:50:55.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:55.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.344 -07 000000462 INF: FPGA: Recv ZSGSRD 35609
17-03-18 06:50:55.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.354 -07 000000501 INF: FPGA: Recv ZSGSRD 35604
17-03-18 06:50:55.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.364 -07 000000590 INF: FPGA: Recv ZSGSRD 35607
17-03-18 06:50:55.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.374 -07 000000461 INF: FPGA: Recv ZSGSRD 35603
17-03-18 06:50:55.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.384 -07 000000608 INF: FPGA: Recv ZSGSRD 35609
17-03-18 06:50:55.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.394 -07 000000501 INF: FPGA: Recv ZSGSRD 35607
17-03-18 06:50:55.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.404 -07 000000461 INF: FPGA: Recv ZSGSRD 35600
17-03-18 06:50:55.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.414 -07 000000474 INF: FPGA: Recv ZSGSRD 35607
17-03-18 06:50:55.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:55.424 -07 000000430 INF: FPGA: Recv ZSGSRD 35606
17-03-18 06:50:55.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:55.434 -07 000000462 INF: FPGA: Recv ZPIEZORD 31365
17-03-18 06:50:55.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:55.444 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.635 V. Piezo Error = -9.3 V.
17-03-18 06:50:55.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35606 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35606 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35600 (-168.2 uncal um), Max = 35609 (-168.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:50:55.444 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35606, posNoise = 3, negNoise = 6
17-03-18 06:50:55.444 -07 000000610 INF: Z Motor: After move to -0.169059, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:55.444 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:50:55.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:50:55.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:50:55.444 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:50:55.444 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:50:55.444 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:50:55.444 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:50:55.444 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:50:55.444 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:50:55.444 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:50:55.444 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:50:55.444 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:50:55.444 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:50:55.454 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:50:55.454 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:50:55.454 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:50:55.454 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:50:55.464 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:50:55.464 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:50:55.464 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:50:55.464 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:50:55.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37108 150\n [Camera]
17-03-18 06:50:55.674 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:50:56.144 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:50:56.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:50:56.144 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:56.144 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:50:56.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:50:56.144 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:56.144 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:56.144 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:50:56.154 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:56.154 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:50:56.334 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37108 853
17-03-18 06:50:56.484 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:50:56.514 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:50:56.514 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 06:50:56.514 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:56.524 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:50:56.524 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:50:56.524 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:56.524 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:50:56.524 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:50:56.524 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:50:56.534 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:50:56.704 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:50:56.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:50:56.714 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:50:56.714 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:50:56.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:50:56.714 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:50:56.714 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:50:56.714 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:50:56.834 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:50:56.834 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:50:56.894 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:50:56.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:50:56.904 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:50:56.904 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:50:56.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37108 150' command took 2 ms to send, 1421 ms to get response, and 1430 ms overall
17-03-18 06:50:56.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:50:56.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71240234375, Z-Position -0.169063849530676. ------
17-03-18 06:50:56.904 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:50:56.904 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17545 mm
17-03-18 06:50:56.904 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:50:56.904 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:50:56.904 -07 000000430 INF: Y Motor: Moving to 66.5526 mm, started at 65.7124 mm, delta = 0.8402 mm
17-03-18 06:50:56.904 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38327, sync = True, waitForSettling = False)
17-03-18 06:50:56.904 -07 000000501 INF: Z Motor: Moving to -0.175450 mm, started at -0.169064 mm, distance = -6.39 um
17-03-18 06:50:56.904 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:50:56.914 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:50:56.914 -07 000000501 INF: FPGA: Xmit ZDACW 38327\n [Z Motor]
17-03-18 06:50:56.914 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:50:56.924 -07 000000501 INF: FPGA: 'ZDACW 38327' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:50:56.924 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:50:56.934 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:56.934 -07 000000474 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:50:56.944 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:56.944 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:50:56.944 -07 000000430 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:56.944 -07 000000480 INF: FPGA: Recv ZDACR 38327
17-03-18 06:50:56.944 -07 000000430 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:50:56.944 -07 000000430 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:50:56.954 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:50:56.954 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:50:56.954 -07 000000501 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:50:57.094 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:50:57.094 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:50:57.094 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:57.104 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:50:57.104 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:50:57.124 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:50:57.124 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:50:57.214 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:50:57.214 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:50:57.214 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:57.214 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:50:57.224 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 06:50:57.324 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 06:50:57.324 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 06:50:57.384 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:57.384 -07 000000501 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:50:57.394 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:50:57.394 -07 000000430 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:57.394 -07 000000430 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:50:57.394 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.840 mm, average velocity = 2.205 mm/sec
17-03-18 06:50:58.344 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:50:58.344 -07 000000480 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:50:58.354 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:58.354 -07 000000430 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:50:58.384 -07 000000430 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:50:58.384 -07 000000430 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:50:58.384 -07 000000430 INF: Y Motor: Moved to 66.5381 after 1477 ms (table move)
17-03-18 06:50:58.394 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175450 mm (DAC = 38327)
17-03-18 06:50:58.394 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:58.394 -07 000000608 INF: FPGA: Recv ZSGSRD 36603
17-03-18 06:50:58.404 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:58.404 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:58.404 -07 000000479 INF: FPGA: Recv ZSGSRD 36607
17-03-18 06:50:58.414 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:58.414 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:58.414 -07 000000461 INF: FPGA: Recv ZSGSRD 36600
17-03-18 06:50:58.424 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:58.424 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:58.424 -07 000000480 INF: FPGA: Recv ZSGSRD 36597
17-03-18 06:50:58.434 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:58.434 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:58.434 -07 000000608 INF: FPGA: Recv ZSGSRD 36594
17-03-18 06:50:58.444 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:58.444 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:58.444 -07 000000480 INF: FPGA: Recv ZSGSRD 36599
17-03-18 06:50:58.454 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:58.454 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:58.454 -07 000000461 INF: FPGA: Recv ZSGSRD 36607
17-03-18 06:50:58.464 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:58.464 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:58.464 -07 000000501 INF: FPGA: Recv ZSGSRD 36599
17-03-18 06:50:58.474 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:58.474 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:58.474 -07 000000461 INF: FPGA: Recv ZSGSRD 36599
17-03-18 06:50:58.484 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:58.484 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:58.484 -07 000000608 INF: FPGA: Recv ZSGSRD 36603
17-03-18 06:50:58.494 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:58.494 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:58.494 -07 000000430 INF: FPGA: Recv ZPIEZORD 32692
17-03-18 06:50:58.504 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:58.504 -07 000000012 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.848 V. Piezo Error = -8.6 V.
17-03-18 06:50:58.504 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36601 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36600 (-174.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36594 (-174.5 uncal um), Max = 36607 (-174.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:50:58.504 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36601, posNoise = 6, negNoise = 7
17-03-18 06:50:58.504 -07 000000012 INF: Z Motor: After move to -0.175450, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:58.504 -07 000000012 INF: Z Motor: Settle wait time = 1480 ms, measure time = 111 ms (allowed 150 ms), total time = 1591 ms
17-03-18 06:50:58.504 -07 000000012 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:50:58.544 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 06:50:58.544 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:50:58.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:50:58.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:50:58.544 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:50:58.544 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:50:58.544 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:50:58.544 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:50:58.554 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:50:58.554 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:50:58.554 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:50:58.554 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:50:58.564 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:50:58.564 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:50:58.564 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:50:58.614 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 06:50:58.914 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 06:50:58.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 06:50:58.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:50:58.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 06:50:58.954 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:50:58.954 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 06:50:58.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 06:50:59.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:50:59.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:50:59.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:50:59.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:50:59.154 -07 000000012 INF: Autofocus start
17-03-18 06:50:59.154 -07 000000012 INF: MeasureProfile start
17-03-18 06:50:59.164 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:50:59.164 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:50:59.164 -07 000000012 INF: MeasureProfile done
17-03-18 06:50:59.164 -07 000000012 INF: X=0  Z correction [um]=-0.0713522
17-03-18 06:50:59.164 -07 000000012 INF: Autofocus finished
17-03-18 06:50:59.174 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:50:59.174 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:50:59.374 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:50:59.374 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:50:59.374 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175455940611728. ----------
17-03-18 06:50:59.374 -07 000000610 INF: Cycle	154	Tile	9	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:50:59.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36824, sync = True, waitForSettling = True)
17-03-18 06:50:59.384 -07 000000610 INF: Z Motor: Moving to -0.168569 mm, started at -0.175456 mm, distance = 6.89 um
17-03-18 06:50:59.384 -07 000000610 INF: FPGA: Xmit ZDACW 36824\n [Z Motor]
17-03-18 06:50:59.384 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:50:59.394 -07 000000610 INF: FPGA: 'ZDACW 36824' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:59.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:50:59.394 -07 000000012 INF: FPGA: Recv ZDACR 36824
17-03-18 06:50:59.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:59.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:50:59.474 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.018051,
17-03-18 06:50:59.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:59.554 -07 000000012 INF: FPGA: Recv ZSGSRD 35528
17-03-18 06:50:59.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:59.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:59.564 -07 000000608 INF: FPGA: Recv ZSGSRD 35533
17-03-18 06:50:59.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:59.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:59.574 -07 000000479 INF: FPGA: Recv ZSGSRD 35531
17-03-18 06:50:59.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:59.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:59.584 -07 000000461 INF: FPGA: Recv ZSGSRD 35529
17-03-18 06:50:59.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:59.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:59.594 -07 000000012 INF: FPGA: Recv ZSGSRD 35528
17-03-18 06:50:59.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:59.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:59.604 -07 000000479 INF: FPGA: Recv ZSGSRD 35531
17-03-18 06:50:59.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:59.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:59.614 -07 000000012 INF: FPGA: Recv ZSGSRD 35535
17-03-18 06:50:59.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:59.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:59.624 -07 000000608 INF: FPGA: Recv ZSGSRD 35538
17-03-18 06:50:59.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:59.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:59.634 -07 000000012 INF: FPGA: Recv ZSGSRD 35525
17-03-18 06:50:59.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:59.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:50:59.644 -07 000000501 INF: FPGA: Recv ZSGSRD 35526
17-03-18 06:50:59.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:59.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:50:59.654 -07 000000012 INF: FPGA: Recv ZPIEZORD 31302
17-03-18 06:50:59.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:50:59.664 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.619 V. Piezo Error = -9.3 V.
17-03-18 06:50:59.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35530 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35530 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35525 (-167.7 uncal um), Max = 35538 (-167.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:50:59.664 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35530, posNoise = 8, negNoise = 5
17-03-18 06:50:59.664 -07 000000610 INF: Z Motor: After move to -0.168569, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:50:59.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:50:59.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:50:59.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:50:59.664 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:50:59.664 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:50:59.664 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:50:59.664 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:50:59.664 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:50:59.664 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:50:59.664 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:50:59.664 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:50:59.664 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:50:59.664 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:50:59.664 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:50:59.674 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:50:59.674 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:50:59.674 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:50:59.674 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:50:59.674 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:50:59.684 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:50:59.684 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:50:59.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37001 150\n [Camera]
17-03-18 06:50:59.884 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:00.354 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:00.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:00.354 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:00.354 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:00.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:00.354 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:00.364 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:00.364 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:51:00.364 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:00.364 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:51:00.544 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37001 853
17-03-18 06:51:00.694 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:51:00.744 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:51:00.744 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:51:00.744 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:00.744 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:51:00.744 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:51:00.744 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:00.744 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:00.744 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:51:00.744 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:00.754 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:51:00.914 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:51:00.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:51:00.924 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:00.924 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:51:00.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:51:00.924 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:00.924 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) start.
17-03-18 06:51:00.924 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:00.924 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:00.924 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:51:01.114 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:51:01.114 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:01.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37001 150' command took 2 ms to send, 1423 ms to get response, and 1430 ms overall
17-03-18 06:51:01.114 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169465
17-03-18 06:51:01.114 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16947 mm
17-03-18 06:51:01.114 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:01.114 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:51:01.114 -07 000000585 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 06:51:01.114 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:01.114 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37020, sync = True, waitForSettling = False)
17-03-18 06:51:01.114 -07 000000430 INF: Z Motor: Moving to -0.169467 mm, started at -0.168576 mm, distance = -0.89 um
17-03-18 06:51:01.124 -07 000000430 INF: FPGA: Xmit ZDACW 37020\n [Z Motor]
17-03-18 06:51:01.124 -07 000000608 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:51:01.124 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 06:51:01.124 -07 000000585 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:01.124 -07 000000585 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:01.124 -07 000000585 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:51:01.124 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:51:01.134 -07 000000430 INF: FPGA: 'ZDACW 37020' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:01.134 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:01.134 -07 000000480 INF: FPGA: Recv ZDACR 37020
17-03-18 06:51:01.144 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:01.144 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:01.144 -07 000000430 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 06:51:01.294 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:51:01.294 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:51:01.294 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:01.304 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:51:01.304 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:51:01.304 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:01.304 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:01.304 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:01.304 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:51:01.314 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:51:01.514 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:51:01.514 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:51:01.574 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:01.574 -07 000000480 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:51:01.584 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:01.584 -07 000000585 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:01.584 -07 000000585 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 06:51:01.584 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.138 mm/sec
17-03-18 06:51:01.894 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:51:01.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:51:02.534 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:02.534 -07 000000608 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:51:02.544 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:02.544 -07 000000585 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:02.574 -07 000000585 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:02.574 -07 000000585 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:51:02.574 -07 000000585 INF: Y Motor: Moved to 67.3706 after 1454 ms (table move)
17-03-18 06:51:02.574 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169467 mm (DAC = 37020)
17-03-18 06:51:02.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.584 -07 000000611 INF: FPGA: Recv ZSGSRD 35668
17-03-18 06:51:02.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:51:02.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.584 -07 000000462 INF: FPGA: Recv ZSGSRD 35677
17-03-18 06:51:02.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.594 -07 000000455 INF: FPGA: Recv ZSGSRD 35661
17-03-18 06:51:02.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.604 -07 000000585 INF: FPGA: Recv ZSGSRD 35668
17-03-18 06:51:02.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.614 -07 000000611 INF: FPGA: Recv ZSGSRD 35669
17-03-18 06:51:02.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.624 -07 000000590 INF: FPGA: Recv ZSGSRD 35668
17-03-18 06:51:02.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:02.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.634 -07 000000461 INF: FPGA: Recv ZSGSRD 35672
17-03-18 06:51:02.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.644 -07 000000444 INF: FPGA: Recv ZSGSRD 35672
17-03-18 06:51:02.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.654 -07 000000480 INF: FPGA: Recv ZSGSRD 35677
17-03-18 06:51:02.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.664 -07 000000501 INF: FPGA: Recv ZSGSRD 35667
17-03-18 06:51:02.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:02.674 -07 000000608 INF: FPGA: Recv ZPIEZORD 31451
17-03-18 06:51:02.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.684 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -9.3 V.
17-03-18 06:51:02.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35670 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35668 (-168.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35661 (-168.5 uncal um), Max = 35677 (-168.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:51:02.684 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35670, posNoise = 7, negNoise = 9
17-03-18 06:51:02.684 -07 000000610 INF: Z Motor: After move to -0.169467, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:02.684 -07 000000610 INF: Z Motor: Settle wait time = 1455 ms, measure time = 105 ms (allowed 150 ms), total time = 1560 ms
17-03-18 06:51:02.684 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:02.734 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 06:51:02.734 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:02.734 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.169474999107748. ----------
17-03-18 06:51:02.734 -07 000000610 INF: Cycle	154	Tile	10	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:02.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36843, sync = True, waitForSettling = True)
17-03-18 06:51:02.734 -07 000000610 INF: Z Motor: Moving to -0.168656 mm, started at -0.169475 mm, distance = 0.82 um
17-03-18 06:51:02.734 -07 000000610 INF: FPGA: Xmit ZDACW 36843\n [Z Motor]
17-03-18 06:51:02.734 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:51:02.744 -07 000000610 INF: FPGA: 'ZDACW 36843' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:51:02.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:02.744 -07 000000444 INF: FPGA: Recv ZDACR 36843
17-03-18 06:51:02.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:02.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.904 -07 000000455 INF: FPGA: Recv ZSGSRD 35543
17-03-18 06:51:02.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:02.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.914 -07 000000462 INF: FPGA: Recv ZSGSRD 35544
17-03-18 06:51:02.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.924 -07 000000585 INF: FPGA: Recv ZSGSRD 35542
17-03-18 06:51:02.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:02.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.934 -07 000000585 INF: FPGA: Recv ZSGSRD 35540
17-03-18 06:51:02.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.944 -07 000000430 INF: FPGA: Recv ZSGSRD 35543
17-03-18 06:51:02.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.954 -07 000000447 INF: FPGA: Recv ZSGSRD 35544
17-03-18 06:51:02.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.964 -07 000000461 INF: FPGA: Recv ZSGSRD 35550
17-03-18 06:51:02.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.974 -07 000000447 INF: FPGA: Recv ZSGSRD 35544
17-03-18 06:51:02.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.984 -07 000000606 INF: FPGA: Recv ZSGSRD 35548
17-03-18 06:51:02.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:02.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:02.994 -07 000000585 INF: FPGA: Recv ZSGSRD 35540
17-03-18 06:51:03.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:03.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:03.004 -07 000000430 INF: FPGA: Recv ZPIEZORD 31286
17-03-18 06:51:03.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:03.014 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.4 V.
17-03-18 06:51:03.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35544 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35544 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35540 (-167.8 uncal um), Max = 35550 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:51:03.014 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35544, posNoise = 6, negNoise = 4
17-03-18 06:51:03.014 -07 000000610 INF: Z Motor: After move to -0.168656, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:03.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:51:03.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:03.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:03.014 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:03.014 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:03.014 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:03.014 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:03.014 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:03.014 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:03.014 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:03.014 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:03.014 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:51:03.014 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:03.024 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:51:03.024 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:03.024 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:51:03.024 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:03.034 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:51:03.034 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:51:03.034 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:51:03.034 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:51:03.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37020 150\n [Camera]
17-03-18 06:51:03.234 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:03.704 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:03.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:03.704 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:03.704 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:03.704 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:51:03.704 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:03.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:03.704 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:03.704 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:03.704 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:51:03.894 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37020 853
17-03-18 06:51:04.044 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:51:04.074 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:51:04.074 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:51:04.074 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:04.074 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:51:04.084 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:51:04.084 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:04.084 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:04.084 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:04.084 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:51:04.084 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:51:04.264 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:51:04.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:51:04.274 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:04.274 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:04.274 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:51:04.274 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:51:04.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:51:04.274 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:04.274 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:04.274 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:51:04.464 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:51:04.464 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:04.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37020 150' command took 2 ms to send, 1421 ms to get response, and 1428 ms overall
17-03-18 06:51:04.464 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.168862
17-03-18 06:51:04.464 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16886 mm
17-03-18 06:51:04.464 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:04.464 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:51:04.464 -07 000000608 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 06:51:04.464 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:04.464 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 36888, sync = True, waitForSettling = False)
17-03-18 06:51:04.464 -07 000000479 INF: Z Motor: Moving to -0.168862 mm, started at -0.168666 mm, distance = -0.20 um
17-03-18 06:51:04.464 -07 000000606 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:51:04.474 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:51:04.474 -07 000000608 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:04.474 -07 000000608 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:04.474 -07 000000608 INF: Y Motor: Moving 1347 steps-25
17-03-18 06:51:04.474 -07 000000479 INF: FPGA: Xmit ZDACW 36888\n [Z Motor]
17-03-18 06:51:04.474 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:51:04.484 -07 000000479 INF: FPGA: 'ZDACW 36888' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:51:04.484 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:04.484 -07 000000447 INF: FPGA: Recv ZDACR 36888
17-03-18 06:51:04.604 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 129 ms overall
17-03-18 06:51:04.604 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:04.604 -07 000000479 INF: Z Motor: MoveAbsStepped took 143 ms (did NOT wait for settling yet))
17-03-18 06:51:04.654 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:51:04.654 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:51:04.654 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:04.654 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:51:04.654 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:51:04.654 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:04.654 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:04.654 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:51:04.664 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:04.664 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:51:04.934 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.023489,
17-03-18 06:51:04.994 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 06:51:04.994 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 381 ms to get response, and 520 ms overall
17-03-18 06:51:05.044 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:05.044 -07 000000447 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:51:05.054 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:51:05.054 -07 000000608 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:05.054 -07 000000608 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:51:05.054 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 520 ms, distance = 0.842 mm, average velocity = 1.619 mm/sec
17-03-18 06:51:06.004 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:06.004 -07 000000479 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:51:06.014 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:06.014 -07 000000608 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:06.044 -07 000000608 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:06.044 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:51:06.044 -07 000000608 INF: Y Motor: Moved to 68.2036 after 1577 ms (table move)
17-03-18 06:51:06.044 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168862 mm (DAC = 36888)
17-03-18 06:51:06.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.044 -07 000000461 INF: FPGA: Recv ZSGSRD 35570
17-03-18 06:51:06.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:51:06.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.054 -07 000000608 INF: FPGA: Recv ZSGSRD 35573
17-03-18 06:51:06.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.064 -07 000000447 INF: FPGA: Recv ZSGSRD 35570
17-03-18 06:51:06.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.074 -07 000000585 INF: FPGA: Recv ZSGSRD 35580
17-03-18 06:51:06.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.084 -07 000000479 INF: FPGA: Recv ZSGSRD 35581
17-03-18 06:51:06.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.094 -07 000000606 INF: FPGA: Recv ZSGSRD 35578
17-03-18 06:51:06.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.104 -07 000000461 INF: FPGA: Recv ZSGSRD 35569
17-03-18 06:51:06.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.114 -07 000000585 INF: FPGA: Recv ZSGSRD 35575
17-03-18 06:51:06.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.124 -07 000000606 INF: FPGA: Recv ZSGSRD 35575
17-03-18 06:51:06.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.134 -07 000000479 INF: FPGA: Recv ZSGSRD 35578
17-03-18 06:51:06.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:06.144 -07 000000447 INF: FPGA: Recv ZPIEZORD 31386
17-03-18 06:51:06.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.154 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.2 V.
17-03-18 06:51:06.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35575 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35575 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35569 (-168.0 uncal um), Max = 35581 (-168.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:51:06.154 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35575, posNoise = 6, negNoise = 6
17-03-18 06:51:06.154 -07 000000610 INF: Z Motor: After move to -0.168862, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:06.154 -07 000000610 INF: Z Motor: Settle wait time = 1579 ms, measure time = 105 ms (allowed 150 ms), total time = 1684 ms
17-03-18 06:51:06.154 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:06.204 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1736 ms
17-03-18 06:51:06.204 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:06.204 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.168864698954281. ----------
17-03-18 06:51:06.204 -07 000000610 INF: Cycle	154	Tile	11	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:06.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36711, sync = True, waitForSettling = True)
17-03-18 06:51:06.204 -07 000000610 INF: Z Motor: Moving to -0.168052 mm, started at -0.168865 mm, distance = 0.81 um
17-03-18 06:51:06.204 -07 000000610 INF: FPGA: Xmit ZDACW 36711\n [Z Motor]
17-03-18 06:51:06.204 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:51:06.214 -07 000000610 INF: FPGA: 'ZDACW 36711' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:51:06.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:06.214 -07 000000447 INF: FPGA: Recv ZDACR 36711
17-03-18 06:51:06.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:51:06.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:06.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.374 -07 000000585 INF: FPGA: Recv ZSGSRD 35459
17-03-18 06:51:06.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:06.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.384 -07 000000461 INF: FPGA: Recv ZSGSRD 35451
17-03-18 06:51:06.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.394 -07 000000430 INF: FPGA: Recv ZSGSRD 35449
17-03-18 06:51:06.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.404 -07 000000461 INF: FPGA: Recv ZSGSRD 35456
17-03-18 06:51:06.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.414 -07 000000585 INF: FPGA: Recv ZSGSRD 35448
17-03-18 06:51:06.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.424 -07 000000461 INF: FPGA: Recv ZSGSRD 35453
17-03-18 06:51:06.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.434 -07 000000608 INF: FPGA: Recv ZSGSRD 35446
17-03-18 06:51:06.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.444 -07 000000447 INF: FPGA: Recv ZSGSRD 35450
17-03-18 06:51:06.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.454 -07 000000479 INF: FPGA: Recv ZSGSRD 35454
17-03-18 06:51:06.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:06.464 -07 000000461 INF: FPGA: Recv ZSGSRD 35449
17-03-18 06:51:06.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:06.474 -07 000000608 INF: FPGA: Recv ZPIEZORD 31217
17-03-18 06:51:06.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:06.484 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.3 V.
17-03-18 06:51:06.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35452 (-167.2 uncal um), Error = 0.8 uncal um, Median = 35450 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35446 (-167.2 uncal um), Max = 35459 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:51:06.484 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35452, posNoise = 7, negNoise = 6
17-03-18 06:51:06.484 -07 000000610 INF: Z Motor: After move to -0.168052, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:06.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:51:06.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:06.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:06.484 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:06.484 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:06.484 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:06.484 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:06.484 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:06.484 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:06.484 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:06.484 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:06.484 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:51:06.484 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:06.494 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:51:06.494 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:06.494 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:51:06.494 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:06.504 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:51:06.504 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:51:06.504 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 06:51:06.504 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:51:06.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36888 150\n [Camera]
17-03-18 06:51:06.704 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:06.894 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:51:06.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:51:07.174 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:07.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:07.174 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:07.174 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:07.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:07.174 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:07.174 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:07.174 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 06:51:07.184 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:07.184 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:51:07.364 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36888 853
17-03-18 06:51:07.514 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:51:07.554 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:51:07.554 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 06:51:07.554 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:07.554 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:51:07.554 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:51:07.554 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:07.554 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:07.554 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:51:07.554 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:07.564 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:51:07.744 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:51:07.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:51:07.744 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:07.744 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:51:07.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:51:07.744 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:07.754 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:51:07.754 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:07.754 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:07.754 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:51:07.934 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-18 06:51:07.934 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:07.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36888 150' command took 2 ms to send, 1423 ms to get response, and 1427 ms overall
17-03-18 06:51:07.934 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.168707
17-03-18 06:51:07.934 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16871 mm
17-03-18 06:51:07.934 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:07.934 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:51:07.934 -07 000000447 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 06:51:07.934 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:07.934 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 36854, sync = True, waitForSettling = False)
17-03-18 06:51:07.934 -07 000000430 INF: Z Motor: Moving to -0.168707 mm, started at -0.168075 mm, distance = -0.63 um
17-03-18 06:51:07.944 -07 000000430 INF: FPGA: Xmit ZDACW 36854\n [Z Motor]
17-03-18 06:51:07.944 -07 000000479 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:51:07.944 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:51:07.944 -07 000000447 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:07.944 -07 000000447 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:07.944 -07 000000447 INF: Y Motor: Moving 1342 steps-18
17-03-18 06:51:07.944 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:51:07.954 -07 000000430 INF: FPGA: 'ZDACW 36854' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:51:07.954 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:07.964 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:07.964 -07 000000608 INF: FPGA: Recv ZDACR 36854
17-03-18 06:51:07.974 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:51:07.974 -07 000000430 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 06:51:08.134 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:51:08.134 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:51:08.134 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:08.134 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:08.134 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:51:08.134 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:51:08.134 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:51:08.134 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:08.134 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:08.144 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:51:08.324 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:51:08.324 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:51:08.384 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:08.384 -07 000000430 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:51:08.394 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:51:08.394 -07 000000447 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:08.394 -07 000000447 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 06:51:08.394 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.168 mm/sec
17-03-18 06:51:09.344 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:09.344 -07 000000461 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:51:09.354 -07 000000447 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:09.354 -07 000000447 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:09.384 -07 000000447 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:09.384 -07 000000447 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:51:09.384 -07 000000447 INF: Y Motor: Moved to 69.0259 after 1445 ms (table move)
17-03-18 06:51:09.384 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168707 mm (DAC = 36854)
17-03-18 06:51:09.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.384 -07 000000430 INF: FPGA: Recv ZSGSRD 35558
17-03-18 06:51:09.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:51:09.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.394 -07 000000447 INF: FPGA: Recv ZSGSRD 35547
17-03-18 06:51:09.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.404 -07 000000474 INF: FPGA: Recv ZSGSRD 35548
17-03-18 06:51:09.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.414 -07 000000447 INF: FPGA: Recv ZSGSRD 35543
17-03-18 06:51:09.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.424 -07 000000474 INF: FPGA: Recv ZSGSRD 35552
17-03-18 06:51:09.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.434 -07 000000447 INF: FPGA: Recv ZSGSRD 35555
17-03-18 06:51:09.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.444 -07 000000474 INF: FPGA: Recv ZSGSRD 35552
17-03-18 06:51:09.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.454 -07 000000430 INF: FPGA: Recv ZSGSRD 35556
17-03-18 06:51:09.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.464 -07 000000479 INF: FPGA: Recv ZSGSRD 35552
17-03-18 06:51:09.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.474 -07 000000608 INF: FPGA: Recv ZSGSRD 35551
17-03-18 06:51:09.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:09.484 -07 000000474 INF: FPGA: Recv ZPIEZORD 31370
17-03-18 06:51:09.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.494 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.624 V. Piezo Error = -9.2 V.
17-03-18 06:51:09.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35551 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35552 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35543 (-167.8 uncal um), Max = 35558 (-167.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:51:09.494 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35551, posNoise = 7, negNoise = 8
17-03-18 06:51:09.494 -07 000000610 INF: Z Motor: After move to -0.168707, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:09.494 -07 000000610 INF: Z Motor: Settle wait time = 1447 ms, measure time = 105 ms (allowed 150 ms), total time = 1552 ms
17-03-18 06:51:09.494 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:09.544 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 06:51:09.544 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:09.544 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.168710517862879. ----------
17-03-18 06:51:09.544 -07 000000610 INF: Cycle	154	Tile	12	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:09.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36677, sync = True, waitForSettling = True)
17-03-18 06:51:09.544 -07 000000610 INF: Z Motor: Moving to -0.167897 mm, started at -0.168711 mm, distance = 0.81 um
17-03-18 06:51:09.544 -07 000000610 INF: FPGA: Xmit ZDACW 36677\n [Z Motor]
17-03-18 06:51:09.544 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:51:09.554 -07 000000610 INF: FPGA: 'ZDACW 36677' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:51:09.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:09.554 -07 000000608 INF: FPGA: Recv ZDACR 36677
17-03-18 06:51:09.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:09.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.714 -07 000000585 INF: FPGA: Recv ZSGSRD 35424
17-03-18 06:51:09.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:09.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.724 -07 000000608 INF: FPGA: Recv ZSGSRD 35430
17-03-18 06:51:09.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.734 -07 000000479 INF: FPGA: Recv ZSGSRD 35423
17-03-18 06:51:09.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.744 -07 000000447 INF: FPGA: Recv ZSGSRD 35424
17-03-18 06:51:09.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.754 -07 000000430 INF: FPGA: Recv ZSGSRD 35425
17-03-18 06:51:09.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.764 -07 000000447 INF: FPGA: Recv ZSGSRD 35429
17-03-18 06:51:09.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.774 -07 000000585 INF: FPGA: Recv ZSGSRD 35430
17-03-18 06:51:09.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.784 -07 000000461 INF: FPGA: Recv ZSGSRD 35423
17-03-18 06:51:09.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.794 -07 000000479 INF: FPGA: Recv ZSGSRD 35428
17-03-18 06:51:09.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:09.804 -07 000000430 INF: FPGA: Recv ZSGSRD 35425
17-03-18 06:51:09.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:09.814 -07 000000479 INF: FPGA: Recv ZPIEZORD 31192
17-03-18 06:51:09.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:09.824 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.597 V. Piezo Error = -9.3 V.
17-03-18 06:51:09.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35426 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35425 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35423 (-167.0 uncal um), Max = 35430 (-167.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:51:09.824 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35426, posNoise = 4, negNoise = 3
17-03-18 06:51:09.824 -07 000000610 INF: Z Motor: After move to -0.167897, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:09.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:51:09.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:09.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:09.824 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:09.824 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:09.824 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:09.824 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:09.824 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:09.824 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:09.824 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:09.824 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:09.824 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:51:09.824 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:09.834 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:51:09.834 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:09.834 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:51:09.834 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:09.844 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:51:09.844 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:51:09.844 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:51:09.844 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:51:09.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36854 150\n [Camera]
17-03-18 06:51:10.044 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:10.304 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.007176,
17-03-18 06:51:10.514 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:51:10.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:51:10.524 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:10.524 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:51:10.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:51:10.524 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:10.524 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:10.524 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2619164976, 0x0, 418435064) start.
17-03-18 06:51:10.524 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:10.524 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:51:10.714 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36854 853
17-03-18 06:51:10.864 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:51:10.894 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2619164976, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:51:10.894 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 06:51:10.894 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:10.894 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:10.904 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:51:10.904 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:51:10.904 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:10.904 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:10.904 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:51:10.904 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:51:11.084 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:51:11.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:51:11.084 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:11.204 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:51:11.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:51:11.204 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:11.214 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:11.214 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 06:51:11.214 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:11.214 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:51:11.274 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:51:11.274 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:11.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36854 150' command took 2 ms to send, 1417 ms to get response, and 1427 ms overall
17-03-18 06:51:11.274 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:51:11.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.167907491345159. ------
17-03-18 06:51:11.284 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:51:11.284 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17412 mm
17-03-18 06:51:11.284 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:11.284 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:51:11.284 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:51:11.284 -07 000000455 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 06:51:11.284 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 38037, sync = True, waitForSettling = False)
17-03-18 06:51:11.284 -07 000000611 INF: Z Motor: Moving to -0.174122 mm, started at -0.167907 mm, distance = -6.21 um
17-03-18 06:51:11.294 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:11.294 -07 000000611 INF: FPGA: Xmit ZDACW 38037\n [Z Motor]
17-03-18 06:51:11.294 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:51:11.304 -07 000000611 INF: FPGA: 'ZDACW 38037' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:51:11.304 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:11.304 -07 000000012 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:51:11.314 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:51:11.314 -07 000000455 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:51:11.314 -07 000000455 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:11.314 -07 000000455 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:11.314 -07 000000455 INF: Y Motor: Moving 1355 steps-34
17-03-18 06:51:11.324 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:11.324 -07 000000012 INF: FPGA: Recv ZDACR 38037
17-03-18 06:51:11.334 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:51:11.334 -07 000000611 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 06:51:11.334 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:11.514 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:51:11.514 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:51:11.594 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:51:11.594 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:51:11.594 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:11.594 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:51:11.594 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:51:11.594 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:11.594 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:11.594 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:11.594 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-18 06:51:11.604 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:51:11.704 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:51:11.704 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 06:51:11.764 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:11.764 -07 000000447 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:51:11.774 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:51:11.774 -07 000000455 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:11.774 -07 000000455 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:51:11.774 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.127 mm/sec
17-03-18 06:51:11.894 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:51:11.894 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:51:12.724 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:12.724 -07 000000608 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:51:12.734 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:12.734 -07 000000455 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:12.764 -07 000000455 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:12.764 -07 000000455 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:51:12.764 -07 000000455 INF: Y Motor: Moved to 69.8618 after 1475 ms (table move)
17-03-18 06:51:12.764 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174122 mm (DAC = 38037)
17-03-18 06:51:12.764 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:12.764 -07 000000474 INF: FPGA: Recv ZSGSRD 36400
17-03-18 06:51:12.774 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:51:12.774 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:12.774 -07 000000474 INF: FPGA: Recv ZSGSRD 36398
17-03-18 06:51:12.784 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:12.784 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:12.784 -07 000000474 INF: FPGA: Recv ZSGSRD 36396
17-03-18 06:51:12.794 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:12.794 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:12.794 -07 000000474 INF: FPGA: Recv ZSGSRD 36391
17-03-18 06:51:12.804 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:12.804 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:12.804 -07 000000474 INF: FPGA: Recv ZSGSRD 36392
17-03-18 06:51:12.814 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:12.814 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:12.814 -07 000000474 INF: FPGA: Recv ZSGSRD 36393
17-03-18 06:51:12.824 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:12.824 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:12.824 -07 000000474 INF: FPGA: Recv ZSGSRD 36397
17-03-18 06:51:12.834 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:12.834 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:12.834 -07 000000479 INF: FPGA: Recv ZSGSRD 36400
17-03-18 06:51:12.844 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:12.844 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:12.844 -07 000000479 INF: FPGA: Recv ZSGSRD 36397
17-03-18 06:51:12.854 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:12.854 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:12.854 -07 000000474 INF: FPGA: Recv ZSGSRD 36391
17-03-18 06:51:12.864 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:12.864 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:12.864 -07 000000479 INF: FPGA: Recv ZPIEZORD 32492
17-03-18 06:51:12.874 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:12.874 -07 000000462 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.804 V. Piezo Error = -8.6 V.
17-03-18 06:51:12.874 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36396 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36396 (-173.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36391 (-173.2 uncal um), Max = 36400 (-173.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:51:12.874 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36396, posNoise = 4, negNoise = 5
17-03-18 06:51:12.874 -07 000000462 INF: Z Motor: After move to -0.174122, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:12.874 -07 000000462 INF: Z Motor: Settle wait time = 1478 ms, measure time = 104 ms (allowed 150 ms), total time = 1582 ms
17-03-18 06:51:12.874 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:12.924 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 06:51:12.924 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:12.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:12.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:12.924 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:12.924 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:12.924 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:51:12.924 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:12.924 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:12.924 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:51:12.934 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:51:12.934 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:51:12.944 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:51:12.944 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:51:12.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:51:12.994 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:51:13.294 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:51:13.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:51:13.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:51:13.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-18 06:51:13.334 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:51:13.334 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 06:51:13.334 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 06:51:13.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:51:13.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:13.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:51:13.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:51:13.434 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:51:13.434 -07 000000474 INF: Autofocus start
17-03-18 06:51:13.434 -07 000000474 INF: MeasureProfile start
17-03-18 06:51:13.434 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:51:13.444 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:13.444 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:51:13.444 -07 000000474 INF: MeasureProfile done
17-03-18 06:51:13.444 -07 000000474 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 06:51:13.444 -07 000000474 INF: Autofocus finished
17-03-18 06:51:13.644 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:51:13.644 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 06:51:13.644 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.174138977122667. ----------
17-03-18 06:51:13.644 -07 000000610 INF: Cycle	154	Tile	13	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:13.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36517, sync = True, waitForSettling = True)
17-03-18 06:51:13.654 -07 000000610 INF: Z Motor: Moving to -0.167164 mm, started at -0.174139 mm, distance = 6.97 um
17-03-18 06:51:13.654 -07 000000610 INF: FPGA: Xmit ZDACW 36517\n [Z Motor]
17-03-18 06:51:13.654 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:51:13.664 -07 000000610 INF: FPGA: 'ZDACW 36517' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:51:13.664 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:13.664 -07 000000479 INF: FPGA: Recv ZDACR 36517
17-03-18 06:51:13.674 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:13.674 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:13.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:13.824 -07 000000611 INF: FPGA: Recv ZSGSRD 35310
17-03-18 06:51:13.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:13.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:13.834 -07 000000474 INF: FPGA: Recv ZSGSRD 35314
17-03-18 06:51:13.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:13.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:13.844 -07 000000444 INF: FPGA: Recv ZSGSRD 35316
17-03-18 06:51:13.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:13.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:13.854 -07 000000611 INF: FPGA: Recv ZSGSRD 35308
17-03-18 06:51:13.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:13.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:13.864 -07 000000012 INF: FPGA: Recv ZSGSRD 35320
17-03-18 06:51:13.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:13.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:13.874 -07 000000455 INF: FPGA: Recv ZSGSRD 35315
17-03-18 06:51:13.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:13.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:13.884 -07 000000012 INF: FPGA: Recv ZSGSRD 35313
17-03-18 06:51:13.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:13.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:13.894 -07 000000430 INF: FPGA: Recv ZSGSRD 35315
17-03-18 06:51:13.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:13.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:13.904 -07 000000462 INF: FPGA: Recv ZSGSRD 35306
17-03-18 06:51:13.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:13.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:13.914 -07 000000012 INF: FPGA: Recv ZSGSRD 35315
17-03-18 06:51:13.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:13.924 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:13.924 -07 000000462 INF: FPGA: Recv ZPIEZORD 31052
17-03-18 06:51:13.934 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:13.934 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -9.4 V.
17-03-18 06:51:13.934 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35313 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35314 (-166.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35306 (-166.3 uncal um), Max = 35320 (-166.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:51:13.934 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35313, posNoise = 7, negNoise = 7
17-03-18 06:51:13.934 -07 000000610 INF: Z Motor: After move to -0.167164, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:13.934 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:51:13.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:13.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:13.934 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:13.934 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:13.934 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:13.934 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:13.934 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:13.934 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:13.934 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:13.934 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:13.934 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:51:13.934 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:13.944 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:51:13.944 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:13.944 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:51:13.944 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:13.954 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:51:13.954 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:51:13.954 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:51:13.954 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:51:13.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36693 150\n [Camera]
17-03-18 06:51:14.154 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:14.624 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:14.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:14.624 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:14.624 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:14.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:14.624 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:14.624 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:14.624 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:51:14.634 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:14.634 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:51:14.814 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36693 853
17-03-18 06:51:14.964 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:51:15.004 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:51:15.004 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:51:15.004 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:15.004 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:51:15.004 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:51:15.004 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:15.014 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:15.014 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:51:15.014 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:15.014 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:51:15.194 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:51:15.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:51:15.194 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:15.304 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:51:15.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:51:15.304 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:15.314 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:15.314 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:15.314 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:51:15.314 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 06:51:15.384 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-18 06:51:15.384 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:15.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36693 150' command took 2 ms to send, 1424 ms to get response, and 1430 ms overall
17-03-18 06:51:15.384 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.167504
17-03-18 06:51:15.384 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16750 mm
17-03-18 06:51:15.384 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:15.394 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:51:15.394 -07 000000455 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-18 06:51:15.394 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:15.394 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 36591, sync = True, waitForSettling = False)
17-03-18 06:51:15.394 -07 000000462 INF: Z Motor: Moving to -0.167503 mm, started at -0.167182 mm, distance = -0.32 um
17-03-18 06:51:15.394 -07 000000479 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:51:15.404 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:51:15.404 -07 000000455 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:15.404 -07 000000455 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:15.404 -07 000000455 INF: Y Motor: Moving 1345 steps-22
17-03-18 06:51:15.404 -07 000000462 INF: FPGA: Xmit ZDACW 36591\n [Z Motor]
17-03-18 06:51:15.404 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:51:15.414 -07 000000462 INF: FPGA: 'ZDACW 36591' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:51:15.414 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:15.424 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:15.424 -07 000000474 INF: FPGA: Recv ZDACR 36591
17-03-18 06:51:15.434 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:51:15.434 -07 000000462 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:51:15.664 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.983999,
17-03-18 06:51:15.694 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:51:15.694 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:51:15.694 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:15.694 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:51:15.694 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:51:15.694 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:15.694 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:51:15.694 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-18 06:51:15.694 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:51:15.704 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:51:15.784 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 06:51:15.784 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:51:15.844 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:15.844 -07 000000479 INF: FPGA: Recv YRDPOS 144767
17-03-18 06:51:15.854 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:15.854 -07 000000455 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:15.854 -07 000000455 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:51:15.854 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.841 mm, average velocity = 2.173 mm/sec
17-03-18 06:51:16.804 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:16.804 -07 000000462 INF: FPGA: Recv YRDPOS 144767
17-03-18 06:51:16.814 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:16.814 -07 000000455 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:16.844 -07 000000455 INF: Y Motor: After move to 70.702606, error = -0.015594, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:16.844 -07 000000455 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:51:16.844 -07 000000455 INF: Y Motor: Moved to 70.6870 after 1450 ms (table move)
17-03-18 06:51:16.844 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167503 mm (DAC = 36591)
17-03-18 06:51:16.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:16.844 -07 000000012 INF: FPGA: Recv ZSGSRD 35368
17-03-18 06:51:16.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:51:16.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:16.854 -07 000000479 INF: FPGA: Recv ZSGSRD 35359
17-03-18 06:51:16.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:16.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:16.864 -07 000000430 INF: FPGA: Recv ZSGSRD 35362
17-03-18 06:51:16.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:16.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:16.874 -07 000000462 INF: FPGA: Recv ZSGSRD 35362
17-03-18 06:51:16.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:16.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:16.884 -07 000000455 INF: FPGA: Recv ZSGSRD 35360
17-03-18 06:51:16.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:16.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:16.894 -07 000000479 INF: FPGA: Recv ZSGSRD 35365
17-03-18 06:51:16.894 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:51:16.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:51:16.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:16.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:16.904 -07 000000455 INF: FPGA: Recv ZSGSRD 35368
17-03-18 06:51:16.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:16.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:16.914 -07 000000012 INF: FPGA: Recv ZSGSRD 35365
17-03-18 06:51:16.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:16.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:16.924 -07 000000455 INF: FPGA: Recv ZSGSRD 35368
17-03-18 06:51:16.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:16.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:16.934 -07 000000012 INF: FPGA: Recv ZSGSRD 35362
17-03-18 06:51:16.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:16.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:16.944 -07 000000455 INF: FPGA: Recv ZPIEZORD 31153
17-03-18 06:51:16.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:16.954 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.3 V.
17-03-18 06:51:16.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35364 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35364 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35359 (-166.6 uncal um), Max = 35368 (-166.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:51:16.954 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35364, posNoise = 4, negNoise = 5
17-03-18 06:51:16.954 -07 000000610 INF: Z Motor: After move to -0.167503, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:16.954 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 105 ms (allowed 150 ms), total time = 1556 ms
17-03-18 06:51:16.954 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:17.004 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 06:51:17.004 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:17.004 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68701171875, Z-position -0.167509190192369. ----------
17-03-18 06:51:17.004 -07 000000610 INF: Cycle	154	Tile	14	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:17.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36414, sync = True, waitForSettling = True)
17-03-18 06:51:17.004 -07 000000610 INF: Z Motor: Moving to -0.166693 mm, started at -0.167509 mm, distance = 0.82 um
17-03-18 06:51:17.004 -07 000000610 INF: FPGA: Xmit ZDACW 36414\n [Z Motor]
17-03-18 06:51:17.004 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:51:17.014 -07 000000610 INF: FPGA: 'ZDACW 36414' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:51:17.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:17.014 -07 000000474 INF: FPGA: Recv ZDACR 36414
17-03-18 06:51:17.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:17.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:17.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:17.174 -07 000000479 INF: FPGA: Recv ZSGSRD 35242
17-03-18 06:51:17.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:17.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:17.184 -07 000000430 INF: FPGA: Recv ZSGSRD 35231
17-03-18 06:51:17.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:17.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:17.194 -07 000000479 INF: FPGA: Recv ZSGSRD 35234
17-03-18 06:51:17.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:17.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:17.204 -07 000000012 INF: FPGA: Recv ZSGSRD 35238
17-03-18 06:51:17.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:17.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:17.214 -07 000000462 INF: FPGA: Recv ZSGSRD 35233
17-03-18 06:51:17.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:17.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:17.224 -07 000000455 INF: FPGA: Recv ZSGSRD 35246
17-03-18 06:51:17.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:17.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:17.234 -07 000000447 INF: FPGA: Recv ZSGSRD 35245
17-03-18 06:51:17.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:17.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:17.244 -07 000000455 INF: FPGA: Recv ZSGSRD 35236
17-03-18 06:51:17.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:17.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:17.254 -07 000000430 INF: FPGA: Recv ZSGSRD 35240
17-03-18 06:51:17.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:17.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:17.264 -07 000000462 INF: FPGA: Recv ZSGSRD 35233
17-03-18 06:51:17.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:17.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:17.274 -07 000000430 INF: FPGA: Recv ZPIEZORD 30950
17-03-18 06:51:17.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:17.284 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.4 V.
17-03-18 06:51:17.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35238 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35237 (-165.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35231 (-165.8 uncal um), Max = 35246 (-165.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:51:17.284 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35238, posNoise = 8, negNoise = 7
17-03-18 06:51:17.284 -07 000000610 INF: Z Motor: After move to -0.166693, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:17.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:51:17.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:17.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:17.284 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:17.284 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:17.284 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:17.284 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:17.284 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:17.284 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:17.284 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:51:17.284 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:17.284 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:17.284 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:17.284 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:51:17.284 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:17.284 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:51:17.284 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:17.304 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:51:17.304 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:51:17.304 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:51:17.304 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:51:17.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36591 150\n [Camera]
17-03-18 06:51:17.504 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:17.974 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:17.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:17.974 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:17.974 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:17.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:17.984 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:17.984 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:17.984 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:51:17.984 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:17.984 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:51:18.164 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36591 853
17-03-18 06:51:18.324 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:51:18.354 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:51:18.354 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 06:51:18.354 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:18.354 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:51:18.354 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:51:18.354 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:18.354 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:18.354 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:51:18.364 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:18.374 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:51:18.544 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:51:18.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:51:18.544 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:18.544 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:18.544 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) start.
17-03-18 06:51:18.544 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:51:18.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:51:18.544 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:18.664 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:18.674 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:51:18.734 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:51:18.734 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:18.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36591 150' command took 2 ms to send, 1416 ms to get response, and 1427 ms overall
17-03-18 06:51:18.734 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.167549
17-03-18 06:51:18.734 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16755 mm
17-03-18 06:51:18.734 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:18.744 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:51:18.744 -07 000000462 INF: Y Motor: Moving to 71.5326 mm, started at 70.6870 mm, delta = 0.8456 mm
17-03-18 06:51:18.744 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:18.744 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 36601, sync = True, waitForSettling = False)
17-03-18 06:51:18.744 -07 000000012 INF: Z Motor: Moving to -0.167549 mm, started at -0.166700 mm, distance = -0.85 um
17-03-18 06:51:18.744 -07 000000590 INF: FPGA: Recv YRDPOS 144767
17-03-18 06:51:18.754 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:51:18.754 -07 000000462 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:18.754 -07 000000462 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:18.754 -07 000000462 INF: Y Motor: Moving 1353 steps-32
17-03-18 06:51:18.754 -07 000000012 INF: FPGA: Xmit ZDACW 36601\n [Z Motor]
17-03-18 06:51:18.754 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:51:18.764 -07 000000012 INF: FPGA: 'ZDACW 36601' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:51:18.764 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:18.764 -07 000000447 INF: FPGA: Recv ZDACR 36601
17-03-18 06:51:18.774 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:18.774 -07 000000012 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 06:51:18.774 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:18.924 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:51:18.924 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:51:18.924 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:18.934 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:18.934 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:51:19.044 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:51:19.044 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:51:19.044 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:19.044 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:51:19.054 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-18 06:51:19.144 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:51:19.144 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:51:19.204 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:19.204 -07 000000479 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:51:19.214 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:19.214 -07 000000462 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:19.214 -07 000000462 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:51:19.214 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-18 06:51:20.164 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:20.164 -07 000000479 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:51:20.174 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:20.174 -07 000000462 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:20.204 -07 000000462 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:20.204 -07 000000462 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:51:20.204 -07 000000462 INF: Y Motor: Moved to 71.5176 after 1460 ms (table move)
17-03-18 06:51:20.204 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167549 mm (DAC = 36601)
17-03-18 06:51:20.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.204 -07 000000590 INF: FPGA: Recv ZSGSRD 35371
17-03-18 06:51:20.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:51:20.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.214 -07 000000461 INF: FPGA: Recv ZSGSRD 35373
17-03-18 06:51:20.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.224 -07 000000444 INF: FPGA: Recv ZSGSRD 35375
17-03-18 06:51:20.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.234 -07 000000585 INF: FPGA: Recv ZSGSRD 35370
17-03-18 06:51:20.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.244 -07 000000479 INF: FPGA: Recv ZSGSRD 35368
17-03-18 06:51:20.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.254 -07 000000480 INF: FPGA: Recv ZSGSRD 35371
17-03-18 06:51:20.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.264 -07 000000444 INF: FPGA: Recv ZSGSRD 35369
17-03-18 06:51:20.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.274 -07 000000608 INF: FPGA: Recv ZSGSRD 35373
17-03-18 06:51:20.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.284 -07 000000479 INF: FPGA: Recv ZSGSRD 35361
17-03-18 06:51:20.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.294 -07 000000474 INF: FPGA: Recv ZSGSRD 35373
17-03-18 06:51:20.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:20.304 -07 000000585 INF: FPGA: Recv ZPIEZORD 31181
17-03-18 06:51:20.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.314 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.585 V. Piezo Error = -9.2 V.
17-03-18 06:51:20.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35370 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35371 (-166.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35361 (-166.6 uncal um), Max = 35375 (-166.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:51:20.314 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35370, posNoise = 5, negNoise = 9
17-03-18 06:51:20.314 -07 000000610 INF: Z Motor: After move to -0.167549, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:20.314 -07 000000610 INF: Z Motor: Settle wait time = 1462 ms, measure time = 106 ms (allowed 150 ms), total time = 1568 ms
17-03-18 06:51:20.314 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:20.364 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 06:51:20.364 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:20.364 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.16754773546522. ----------
17-03-18 06:51:20.364 -07 000000610 INF: Cycle	154	Tile	15	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:20.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36424, sync = True, waitForSettling = True)
17-03-18 06:51:20.364 -07 000000610 INF: Z Motor: Moving to -0.166738 mm, started at -0.167548 mm, distance = 0.81 um
17-03-18 06:51:20.364 -07 000000610 INF: FPGA: Xmit ZDACW 36424\n [Z Motor]
17-03-18 06:51:20.364 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:51:20.374 -07 000000610 INF: FPGA: 'ZDACW 36424' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:51:20.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:20.374 -07 000000585 INF: FPGA: Recv ZDACR 36424
17-03-18 06:51:20.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:20.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.534 -07 000000430 INF: FPGA: Recv ZSGSRD 35249
17-03-18 06:51:20.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:20.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.544 -07 000000455 INF: FPGA: Recv ZSGSRD 35248
17-03-18 06:51:20.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.554 -07 000000430 INF: FPGA: Recv ZSGSRD 35249
17-03-18 06:51:20.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.564 -07 000000455 INF: FPGA: Recv ZSGSRD 35241
17-03-18 06:51:20.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.574 -07 000000430 INF: FPGA: Recv ZSGSRD 35247
17-03-18 06:51:20.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.584 -07 000000455 INF: FPGA: Recv ZSGSRD 35246
17-03-18 06:51:20.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.594 -07 000000430 INF: FPGA: Recv ZSGSRD 35248
17-03-18 06:51:20.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.604 -07 000000455 INF: FPGA: Recv ZSGSRD 35249
17-03-18 06:51:20.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.614 -07 000000430 INF: FPGA: Recv ZSGSRD 35248
17-03-18 06:51:20.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:20.624 -07 000000455 INF: FPGA: Recv ZSGSRD 35250
17-03-18 06:51:20.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:20.634 -07 000000479 INF: FPGA: Recv ZPIEZORD 30969
17-03-18 06:51:20.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:20.644 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -9.4 V.
17-03-18 06:51:20.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35248 (-165.9 uncal um), Error = 0.8 uncal um, Median = 35248 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35241 (-165.9 uncal um), Max = 35250 (-165.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:51:20.644 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35248, posNoise = 2, negNoise = 7
17-03-18 06:51:20.644 -07 000000610 INF: Z Motor: After move to -0.166738, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:20.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:51:20.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:20.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:20.644 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:20.644 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:20.644 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:20.644 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:20.644 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:20.644 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:20.644 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:20.644 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:20.644 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:51:20.644 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:20.654 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:51:20.654 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:20.654 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:51:20.654 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:20.664 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:51:20.664 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:51:20.664 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:51:20.664 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:51:20.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36601 150\n [Camera]
17-03-18 06:51:20.864 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:21.034 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.996267,
17-03-18 06:51:21.334 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:21.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:21.334 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:21.344 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:21.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:21.344 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:21.344 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:21.344 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:51:21.344 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:21.344 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:51:21.534 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36601 853
17-03-18 06:51:21.684 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:51:21.714 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:51:21.714 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:51:21.714 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:21.714 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:51:21.714 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:51:21.714 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:21.724 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:51:21.724 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:51:21.724 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:51:21.734 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:51:21.894 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:51:21.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:51:21.904 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:51:21.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:51:21.904 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:21.904 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:51:21.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:51:21.914 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:21.914 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:21.914 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:51:21.914 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:21.914 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:51:22.094 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:51:22.094 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:22.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36601 150' command took 2 ms to send, 1417 ms to get response, and 1427 ms overall
17-03-18 06:51:22.094 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167135
17-03-18 06:51:22.104 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16714 mm
17-03-18 06:51:22.104 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:22.104 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 36511, sync = True, waitForSettling = False)
17-03-18 06:51:22.104 -07 000000455 INF: Z Motor: Moving to -0.167137 mm, started at -0.166764 mm, distance = -0.37 um
17-03-18 06:51:22.104 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:51:22.104 -07 000000585 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 06:51:22.104 -07 000000455 INF: FPGA: Xmit ZDACW 36511\n [Z Motor]
17-03-18 06:51:22.104 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:51:22.114 -07 000000455 INF: FPGA: 'ZDACW 36511' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:51:22.114 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:22.114 -07 000000479 INF: FPGA: Recv ZDACR 36511
17-03-18 06:51:22.124 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:22.124 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:22.124 -07 000000455 INF: Z Motor: MoveAbsStepped took 16 ms (did NOT wait for settling yet))
17-03-18 06:51:22.124 -07 000000608 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:51:22.134 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:51:22.134 -07 000000585 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:22.134 -07 000000585 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:22.134 -07 000000585 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:51:22.134 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:22.294 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:51:22.294 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:51:22.294 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:22.294 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:51:22.294 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:51:22.294 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:22.294 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:51:22.294 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:51:22.294 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:22.304 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:51:22.504 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 06:51:22.504 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 06:51:22.564 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:22.564 -07 000000455 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:51:22.574 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:22.574 -07 000000585 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:22.574 -07 000000585 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:51:22.574 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.236 mm/sec
17-03-18 06:51:23.524 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:23.524 -07 000000444 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:51:23.534 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:23.534 -07 000000585 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:23.564 -07 000000585 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:23.564 -07 000000585 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:51:23.564 -07 000000585 INF: Y Motor: Moved to 72.3481 after 1459 ms (table move)
17-03-18 06:51:23.564 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167137 mm (DAC = 36511)
17-03-18 06:51:23.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.564 -07 000000585 INF: FPGA: Recv ZSGSRD 35310
17-03-18 06:51:23.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:51:23.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.574 -07 000000585 INF: FPGA: Recv ZSGSRD 35305
17-03-18 06:51:23.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.584 -07 000000585 INF: FPGA: Recv ZSGSRD 35307
17-03-18 06:51:23.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.594 -07 000000455 INF: FPGA: Recv ZSGSRD 35308
17-03-18 06:51:23.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.604 -07 000000585 INF: FPGA: Recv ZSGSRD 35308
17-03-18 06:51:23.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.614 -07 000000455 INF: FPGA: Recv ZSGSRD 35311
17-03-18 06:51:23.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.624 -07 000000585 INF: FPGA: Recv ZSGSRD 35310
17-03-18 06:51:23.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.634 -07 000000585 INF: FPGA: Recv ZSGSRD 35305
17-03-18 06:51:23.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.644 -07 000000455 INF: FPGA: Recv ZSGSRD 35311
17-03-18 06:51:23.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.654 -07 000000585 INF: FPGA: Recv ZSGSRD 35307
17-03-18 06:51:23.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:23.664 -07 000000455 INF: FPGA: Recv ZPIEZORD 31065
17-03-18 06:51:23.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.674 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.571 V. Piezo Error = -9.3 V.
17-03-18 06:51:23.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35308 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35308 (-166.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35305 (-166.3 uncal um), Max = 35311 (-166.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:51:23.674 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35308, posNoise = 3, negNoise = 3
17-03-18 06:51:23.674 -07 000000610 INF: Z Motor: After move to -0.167137, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:23.674 -07 000000610 INF: Z Motor: Settle wait time = 1461 ms, measure time = 105 ms (allowed 150 ms), total time = 1566 ms
17-03-18 06:51:23.674 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:23.724 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 06:51:23.724 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:23.724 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.167149434312431. ----------
17-03-18 06:51:23.724 -07 000000610 INF: Cycle	154	Tile	16	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:23.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36334, sync = True, waitForSettling = True)
17-03-18 06:51:23.724 -07 000000610 INF: Z Motor: Moving to -0.166326 mm, started at -0.167149 mm, distance = 0.82 um
17-03-18 06:51:23.724 -07 000000610 INF: FPGA: Xmit ZDACW 36334\n [Z Motor]
17-03-18 06:51:23.724 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:51:23.734 -07 000000610 INF: FPGA: 'ZDACW 36334' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:51:23.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:23.734 -07 000000474 INF: FPGA: Recv ZDACR 36334
17-03-18 06:51:23.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:23.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.894 -07 000000474 INF: FPGA: Recv ZSGSRD 35181
17-03-18 06:51:23.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:23.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.904 -07 000000474 INF: FPGA: Recv ZSGSRD 35178
17-03-18 06:51:23.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.914 -07 000000447 INF: FPGA: Recv ZSGSRD 35186
17-03-18 06:51:23.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.924 -07 000000447 INF: FPGA: Recv ZSGSRD 35181
17-03-18 06:51:23.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.934 -07 000000447 INF: FPGA: Recv ZSGSRD 35185
17-03-18 06:51:23.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.944 -07 000000474 INF: FPGA: Recv ZSGSRD 35185
17-03-18 06:51:23.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.954 -07 000000474 INF: FPGA: Recv ZSGSRD 35178
17-03-18 06:51:23.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.964 -07 000000474 INF: FPGA: Recv ZSGSRD 35183
17-03-18 06:51:23.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.974 -07 000000479 INF: FPGA: Recv ZSGSRD 35181
17-03-18 06:51:23.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:23.984 -07 000000479 INF: FPGA: Recv ZSGSRD 35183
17-03-18 06:51:23.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:23.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:23.994 -07 000000474 INF: FPGA: Recv ZPIEZORD 30882
17-03-18 06:51:24.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:24.004 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.544 V. Piezo Error = -9.5 V.
17-03-18 06:51:24.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35182 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35182 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35178 (-165.4 uncal um), Max = 35186 (-165.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:51:24.004 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35182, posNoise = 4, negNoise = 4
17-03-18 06:51:24.004 -07 000000610 INF: Z Motor: After move to -0.166326, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:24.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:51:24.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:24.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:24.004 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:24.004 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:24.004 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:24.004 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:24.004 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:24.004 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:24.004 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:51:24.004 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:24.004 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:24.004 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:24.014 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:51:24.014 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:24.014 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:51:24.014 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:24.024 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:51:24.024 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:51:24.024 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:51:24.024 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:51:24.024 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36511 150\n [Camera]
17-03-18 06:51:24.224 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:24.694 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:24.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:24.694 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:24.694 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:24.694 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:51:24.694 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:24.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:24.704 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:24.704 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:24.704 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:51:24.884 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36511 853
17-03-18 06:51:25.034 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:51:25.074 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:51:25.074 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:51:25.074 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:25.074 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:51:25.074 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:51:25.074 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:25.074 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:25.074 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:51:25.084 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:25.084 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:51:25.264 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:51:25.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:51:25.264 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:25.264 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:25.264 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:51:25.264 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:51:25.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:51:25.264 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:25.264 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:25.264 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:51:25.454 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:51:25.454 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:25.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36511 150' command took 2 ms to send, 1416 ms to get response, and 1427 ms overall
17-03-18 06:51:25.454 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:51:25.454 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.166339983582569. ------
17-03-18 06:51:25.464 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17269 mm
17-03-18 06:51:25.464 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:25.464 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:51:25.464 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 37724, sync = True, waitForSettling = False)
17-03-18 06:51:25.464 -07 000000585 INF: Z Motor: Moving to -0.172689 mm, started at -0.166340 mm, distance = -6.35 um
17-03-18 06:51:25.464 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:51:25.464 -07 000000608 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 06:51:25.474 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:25.484 -07 000000585 INF: FPGA: Xmit ZDACW 37724\n [Z Motor]
17-03-18 06:51:25.644 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:51:25.644 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:51:25.644 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:25.644 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:51:25.644 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:51:25.644 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:25.644 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:25.654 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:25.654 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:51:25.654 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:51:25.664 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:51:25.664 -07 000000611 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:51:25.664 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:51:25.664 -07 000000585 INF: FPGA: 'ZDACW 37724' command took 0 ms to send, 171 ms to get response, and 196 ms overall
17-03-18 06:51:25.664 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:25.664 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 181 ms to get response, and 196 ms overall
17-03-18 06:51:25.664 -07 000000608 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:25.664 -07 000000608 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:25.664 -07 000000608 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:51:25.664 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 191 ms to get response, and 198 ms overall
17-03-18 06:51:25.664 -07 000000611 INF: FPGA: Recv ZDACR 37724
17-03-18 06:51:25.674 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:51:25.674 -07 000000585 INF: Z Motor: MoveAbsStepped took 205 ms (did NOT wait for settling yet))
17-03-18 06:51:25.674 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:51:25.684 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:25.874 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:51:25.874 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 06:51:26.064 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:51:26.064 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 399 ms overall
17-03-18 06:51:26.114 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:26.124 -07 000000585 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:51:26.124 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:51:26.124 -07 000000608 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:26.124 -07 000000608 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 06:51:26.124 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.116 mm/sec
17-03-18 06:51:26.404 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.001704,
17-03-18 06:51:26.894 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:51:26.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:51:27.074 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:27.074 -07 000000430 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:51:27.084 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:27.084 -07 000000608 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:27.114 -07 000000608 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:27.114 -07 000000608 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:51:27.114 -07 000000608 INF: Y Motor: Moved to 73.1748 after 1648 ms (table move)
17-03-18 06:51:27.114 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172689 mm (DAC = 37724)
17-03-18 06:51:27.114 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:27.124 -07 000000611 INF: FPGA: Recv ZSGSRD 36166
17-03-18 06:51:27.124 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 06:51:27.124 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:27.124 -07 000000608 INF: FPGA: Recv ZSGSRD 36184
17-03-18 06:51:27.134 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:51:27.134 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:27.134 -07 000000611 INF: FPGA: Recv ZSGSRD 36174
17-03-18 06:51:27.144 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:27.144 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:27.144 -07 000000585 INF: FPGA: Recv ZSGSRD 36169
17-03-18 06:51:27.154 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:27.154 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:27.154 -07 000000611 INF: FPGA: Recv ZSGSRD 36174
17-03-18 06:51:27.164 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:27.164 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:27.164 -07 000000461 INF: FPGA: Recv ZSGSRD 36170
17-03-18 06:51:27.174 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:27.174 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:27.174 -07 000000611 INF: FPGA: Recv ZSGSRD 36180
17-03-18 06:51:27.184 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:27.184 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:27.184 -07 000000608 INF: FPGA: Recv ZSGSRD 36173
17-03-18 06:51:27.194 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:27.194 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:27.194 -07 000000461 INF: FPGA: Recv ZSGSRD 36166
17-03-18 06:51:27.204 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:27.204 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:27.204 -07 000000611 INF: FPGA: Recv ZSGSRD 36176
17-03-18 06:51:27.214 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:27.214 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:27.214 -07 000000585 INF: FPGA: Recv ZPIEZORD 32207
17-03-18 06:51:27.224 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:27.224 -07 000000501 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.8 V.
17-03-18 06:51:27.224 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36173 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36174 (-171.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36166 (-171.8 uncal um), Max = 36184 (-171.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:51:27.224 -07 000000501 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36173, posNoise = 11, negNoise = 7
17-03-18 06:51:27.224 -07 000000501 INF: Z Motor: After move to -0.172689, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:27.224 -07 000000501 INF: Z Motor: Settle wait time = 1652 ms, measure time = 104 ms (allowed 150 ms), total time = 1756 ms
17-03-18 06:51:27.224 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:27.274 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1807 ms
17-03-18 06:51:27.274 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:27.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:27.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:27.274 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:27.274 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:27.274 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:51:27.274 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:27.284 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:27.284 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:51:27.284 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:51:27.284 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:51:27.294 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:51:27.294 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:51:27.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:51:27.344 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:51:27.644 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:51:27.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:51:27.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:51:27.764 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:51:27.764 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 06:51:27.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 458 ms to get response, and 469 ms overall
17-03-18 06:51:27.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2487030032, 0x0, 559484976) start.
17-03-18 06:51:27.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2487030032, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:51:27.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:27.884 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:51:27.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 239 ms.
17-03-18 06:51:27.964 -07 000000501 INF: Autofocus start
17-03-18 06:51:27.964 -07 000000501 INF: MeasureProfile start
17-03-18 06:51:27.964 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:51:27.964 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:51:27.974 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:51:27.974 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:51:27.984 -07 000000501 INF: MeasureProfile done
17-03-18 06:51:27.984 -07 000000501 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:51:27.984 -07 000000501 INF: Autofocus finished
17-03-18 06:51:28.174 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:51:28.174 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 06:51:28.174 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.172706377815054. ----------
17-03-18 06:51:28.174 -07 000000610 INF: Cycle	154	Tile	17	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:28.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36275, sync = True, waitForSettling = True)
17-03-18 06:51:28.184 -07 000000610 INF: Z Motor: Moving to -0.166056 mm, started at -0.172706 mm, distance = 6.65 um
17-03-18 06:51:28.184 -07 000000610 INF: FPGA: Xmit ZDACW 36275\n [Z Motor]
17-03-18 06:51:28.184 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:51:28.194 -07 000000610 INF: FPGA: 'ZDACW 36275' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:51:28.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:28.194 -07 000000462 INF: FPGA: Recv ZDACR 36275
17-03-18 06:51:28.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:28.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:28.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:28.354 -07 000000462 INF: FPGA: Recv ZSGSRD 35138
17-03-18 06:51:28.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:28.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:28.364 -07 000000462 INF: FPGA: Recv ZSGSRD 35144
17-03-18 06:51:28.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:28.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:28.374 -07 000000462 INF: FPGA: Recv ZSGSRD 35136
17-03-18 06:51:28.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:28.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:28.384 -07 000000462 INF: FPGA: Recv ZSGSRD 35138
17-03-18 06:51:28.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:28.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:28.394 -07 000000462 INF: FPGA: Recv ZSGSRD 35142
17-03-18 06:51:28.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:28.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:28.404 -07 000000462 INF: FPGA: Recv ZSGSRD 35134
17-03-18 06:51:28.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:28.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:28.414 -07 000000462 INF: FPGA: Recv ZSGSRD 35142
17-03-18 06:51:28.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:28.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:28.424 -07 000000585 INF: FPGA: Recv ZSGSRD 35138
17-03-18 06:51:28.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:28.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:28.434 -07 000000611 INF: FPGA: Recv ZSGSRD 35139
17-03-18 06:51:28.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:28.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:28.444 -07 000000611 INF: FPGA: Recv ZSGSRD 35137
17-03-18 06:51:28.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:28.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:28.454 -07 000000480 INF: FPGA: Recv ZPIEZORD 30856
17-03-18 06:51:28.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:28.464 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.535 V. Piezo Error = -9.4 V.
17-03-18 06:51:28.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35139 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35138 (-165.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35134 (-165.2 uncal um), Max = 35144 (-165.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:51:28.464 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35139, posNoise = 5, negNoise = 5
17-03-18 06:51:28.464 -07 000000610 INF: Z Motor: After move to -0.166056, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:28.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 06:51:28.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:28.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:28.464 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:28.464 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:28.464 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:28.464 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:28.464 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:28.464 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:28.464 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:51:28.474 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:28.474 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:51:28.474 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:28.474 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:51:28.474 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:28.474 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:51:28.474 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:28.484 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:51:28.484 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:51:28.484 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:51:28.484 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:51:28.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36452 150\n [Camera]
17-03-18 06:51:28.684 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:29.154 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:29.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:29.154 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:29.154 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:29.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:29.154 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:29.164 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:29.164 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:51:29.164 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:29.164 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:51:29.344 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36452 853
17-03-18 06:51:29.494 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:51:29.554 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 06:51:29.554 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:51:29.554 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:29.554 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:51:29.554 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:51:29.554 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:29.554 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:29.554 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:51:29.554 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:29.564 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:51:29.724 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:51:29.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:51:29.724 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:29.724 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:51:29.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:51:29.724 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:29.724 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:29.724 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2619164976, 0x0, 418435064) start.
17-03-18 06:51:29.844 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:29.844 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:51:29.914 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:51:29.914 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:29.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36452 150' command took 2 ms to send, 1423 ms to get response, and 1428 ms overall
17-03-18 06:51:29.914 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.166003
17-03-18 06:51:29.914 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16600 mm
17-03-18 06:51:29.914 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:29.914 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:51:29.914 -07 000000462 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 06:51:29.914 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 36263, sync = True, waitForSettling = False)
17-03-18 06:51:29.914 -07 000000590 INF: Z Motor: Moving to -0.166001 mm, started at -0.166064 mm, distance = 0.06 um
17-03-18 06:51:29.914 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:29.924 -07 000000590 INF: FPGA: Xmit ZDACW 36263\n [Z Motor]
17-03-18 06:51:29.924 -07 000000461 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:51:29.924 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 06:51:29.924 -07 000000462 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:29.924 -07 000000462 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:29.924 -07 000000462 INF: Y Motor: Moving 1356 steps-36
17-03-18 06:51:29.924 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:51:29.934 -07 000000590 INF: FPGA: 'ZDACW 36263' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:51:29.934 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:29.944 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:29.944 -07 000000430 INF: FPGA: Recv ZDACR 36263
17-03-18 06:51:29.954 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:51:29.954 -07 000000590 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 06:51:30.114 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2619164976, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 06:51:30.114 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:51:30.114 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:30.114 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:30.124 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:51:30.234 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:51:30.234 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:51:30.234 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:30.244 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:30.244 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-18 06:51:30.304 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:51:30.304 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 06:51:30.354 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:30.354 -07 000000480 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:51:30.364 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:30.364 -07 000000462 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:30.364 -07 000000462 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:51:30.364 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.848 mm, average velocity = 2.202 mm/sec
17-03-18 06:51:31.314 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:31.314 -07 000000585 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:51:31.324 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.324 -07 000000462 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:31.344 -07 000000462 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:31.344 -07 000000462 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:51:31.344 -07 000000462 INF: Y Motor: Moved to 74.0068 after 1428 ms (table move)
17-03-18 06:51:31.344 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166001 mm (DAC = 36263)
17-03-18 06:51:31.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.354 -07 000000455 INF: FPGA: Recv ZSGSRD 35133
17-03-18 06:51:31.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:31.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.364 -07 000000606 INF: FPGA: Recv ZSGSRD 35131
17-03-18 06:51:31.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.374 -07 000000474 INF: FPGA: Recv ZSGSRD 35126
17-03-18 06:51:31.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.384 -07 000000462 INF: FPGA: Recv ZSGSRD 35129
17-03-18 06:51:31.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.394 -07 000000474 INF: FPGA: Recv ZSGSRD 35126
17-03-18 06:51:31.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.404 -07 000000606 INF: FPGA: Recv ZSGSRD 35125
17-03-18 06:51:31.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.414 -07 000000606 INF: FPGA: Recv ZSGSRD 35139
17-03-18 06:51:31.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.424 -07 000000462 INF: FPGA: Recv ZSGSRD 35130
17-03-18 06:51:31.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.434 -07 000000455 INF: FPGA: Recv ZSGSRD 35133
17-03-18 06:51:31.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.444 -07 000000462 INF: FPGA: Recv ZSGSRD 35132
17-03-18 06:51:31.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:31.464 -07 000000474 INF: FPGA: Recv ZPIEZORD 30898
17-03-18 06:51:31.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:51:31.474 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.533 V. Piezo Error = -9.3 V.
17-03-18 06:51:31.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35130 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35130 (-165.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35125 (-165.1 uncal um), Max = 35139 (-165.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:51:31.474 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35130, posNoise = 9, negNoise = 5
17-03-18 06:51:31.474 -07 000000610 INF: Z Motor: After move to -0.166001, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:31.474 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 121 ms (allowed 150 ms), total time = 1552 ms
17-03-18 06:51:31.474 -07 000000610 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:31.504 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-18 06:51:31.504 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:31.504 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.166005924551197. ----------
17-03-18 06:51:31.504 -07 000000610 INF: Cycle	154	Tile	18	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:31.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36087, sync = True, waitForSettling = True)
17-03-18 06:51:31.504 -07 000000610 INF: Z Motor: Moving to -0.165196 mm, started at -0.166006 mm, distance = 0.81 um
17-03-18 06:51:31.504 -07 000000610 INF: FPGA: Xmit ZDACW 36087\n [Z Motor]
17-03-18 06:51:31.504 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:51:31.514 -07 000000610 INF: FPGA: 'ZDACW 36087' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:51:31.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:31.514 -07 000000462 INF: FPGA: Recv ZDACR 36087
17-03-18 06:51:31.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:31.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.674 -07 000000474 INF: FPGA: Recv ZSGSRD 35005
17-03-18 06:51:31.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:31.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.684 -07 000000462 INF: FPGA: Recv ZSGSRD 35009
17-03-18 06:51:31.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.694 -07 000000462 INF: FPGA: Recv ZSGSRD 35005
17-03-18 06:51:31.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.704 -07 000000462 INF: FPGA: Recv ZSGSRD 35004
17-03-18 06:51:31.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.714 -07 000000606 INF: FPGA: Recv ZSGSRD 35004
17-03-18 06:51:31.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.724 -07 000000606 INF: FPGA: Recv ZSGSRD 35001
17-03-18 06:51:31.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.734 -07 000000462 INF: FPGA: Recv ZSGSRD 35011
17-03-18 06:51:31.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.744 -07 000000606 INF: FPGA: Recv ZSGSRD 35009
17-03-18 06:51:31.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.754 -07 000000474 INF: FPGA: Recv ZSGSRD 35002
17-03-18 06:51:31.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:31.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:31.774 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.989471,
17-03-18 06:51:31.774 -07 000000611 INF: FPGA: Recv ZSGSRD 35008
17-03-18 06:51:31.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:51:31.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:31.804 -07 000000606 INF: FPGA: Recv ZPIEZORD 30720
17-03-18 06:51:31.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:51:31.814 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.507 V. Piezo Error = -9.4 V.
17-03-18 06:51:31.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35006 (-164.3 uncal um), Error = 0.8 uncal um, Median = 35005 (-164.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35001 (-164.3 uncal um), Max = 35011 (-164.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:51:31.814 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35006, posNoise = 5, negNoise = 5
17-03-18 06:51:31.814 -07 000000610 INF: Z Motor: After move to -0.165196, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:31.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 303 ms)
17-03-18 06:51:31.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:31.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:31.814 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:31.814 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:31.814 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:31.814 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:31.814 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:31.814 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:51:31.814 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:31.814 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:31.814 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:51:31.814 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:31.824 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:51:31.824 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:31.824 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:51:31.824 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:31.834 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:51:31.834 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:51:31.834 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 06:51:31.834 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:51:31.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36263 150\n [Camera]
17-03-18 06:51:31.904 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:51:31.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:51:32.034 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:32.504 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:32.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:32.504 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:32.514 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:32.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:32.514 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:32.514 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:32.514 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:51:32.514 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:32.514 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:51:32.704 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36263 853
17-03-18 06:51:32.854 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:51:32.904 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:51:32.904 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:51:32.904 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:32.904 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:51:32.904 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:51:32.904 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:32.914 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:51:32.914 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:51:32.914 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:32.914 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:51:33.074 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:51:33.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:51:33.074 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:33.074 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:51:33.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:51:33.084 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:33.084 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:33.084 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:51:33.084 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:33.084 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:51:33.264 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:51:33.264 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:33.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36263 150' command took 2 ms to send, 1418 ms to get response, and 1428 ms overall
17-03-18 06:51:33.264 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.165448
17-03-18 06:51:33.274 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16545 mm
17-03-18 06:51:33.274 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:33.274 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:51:33.274 -07 000000444 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 06:51:33.274 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:33.274 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 36142, sync = True, waitForSettling = False)
17-03-18 06:51:33.274 -07 000000455 INF: Z Motor: Moving to -0.165447 mm, started at -0.165209 mm, distance = -0.24 um
17-03-18 06:51:33.274 -07 000000474 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:51:33.284 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:33.284 -07 000000444 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:33.284 -07 000000455 INF: FPGA: Xmit ZDACW 36142\n [Z Motor]
17-03-18 06:51:33.284 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:51:33.284 -07 000000444 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:33.284 -07 000000444 INF: Y Motor: Moving 1352 steps-32
17-03-18 06:51:33.294 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:33.294 -07 000000455 INF: FPGA: 'ZDACW 36142' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:51:33.304 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:33.304 -07 000000479 INF: FPGA: Recv ZDACR 36142
17-03-18 06:51:33.314 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:51:33.314 -07 000000455 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 06:51:33.474 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:51:33.474 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:51:33.474 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:33.474 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:51:33.474 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:51:33.474 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:33.474 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:33.474 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:51:33.484 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:33.484 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:51:33.664 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:51:33.664 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 06:51:33.704 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:33.704 -07 000000606 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:51:33.714 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:33.714 -07 000000444 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:33.714 -07 000000444 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 06:51:33.714 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.846 mm, average velocity = 2.197 mm/sec
17-03-18 06:51:34.664 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:34.664 -07 000000474 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:51:34.674 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:34.674 -07 000000444 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:34.694 -07 000000444 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:34.694 -07 000000444 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:51:34.694 -07 000000444 INF: Y Motor: Moved to 74.8306 after 1418 ms (table move)
17-03-18 06:51:34.694 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.165447 mm (DAC = 36142)
17-03-18 06:51:34.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:34.694 -07 000000444 INF: FPGA: Recv ZSGSRD 35042
17-03-18 06:51:34.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:34.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:34.704 -07 000000462 INF: FPGA: Recv ZSGSRD 35038
17-03-18 06:51:34.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:34.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:34.714 -07 000000444 INF: FPGA: Recv ZSGSRD 35043
17-03-18 06:51:34.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:34.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:34.724 -07 000000462 INF: FPGA: Recv ZSGSRD 35046
17-03-18 06:51:34.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:34.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:34.734 -07 000000444 INF: FPGA: Recv ZSGSRD 35048
17-03-18 06:51:34.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:34.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:34.744 -07 000000462 INF: FPGA: Recv ZSGSRD 35047
17-03-18 06:51:34.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:34.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:34.754 -07 000000444 INF: FPGA: Recv ZSGSRD 35040
17-03-18 06:51:34.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:34.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:34.764 -07 000000462 INF: FPGA: Recv ZSGSRD 35053
17-03-18 06:51:34.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:34.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:34.774 -07 000000444 INF: FPGA: Recv ZSGSRD 35039
17-03-18 06:51:34.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:34.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:34.784 -07 000000444 INF: FPGA: Recv ZSGSRD 35043
17-03-18 06:51:34.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:34.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:34.794 -07 000000444 INF: FPGA: Recv ZPIEZORD 30746
17-03-18 06:51:34.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:34.804 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.515 V. Piezo Error = -9.5 V.
17-03-18 06:51:34.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35044 (-164.6 uncal um), Error = 0.9 uncal um, Median = 35043 (-164.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35038 (-164.6 uncal um), Max = 35053 (-164.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:51:34.804 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35044, posNoise = 9, negNoise = 6
17-03-18 06:51:34.804 -07 000000610 INF: Z Motor: After move to -0.165447, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:34.804 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 106 ms (allowed 150 ms), total time = 1526 ms
17-03-18 06:51:34.804 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:34.854 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-18 06:51:34.854 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:34.854 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.165453442307006. ----------
17-03-18 06:51:34.854 -07 000000610 INF: Cycle	154	Tile	19	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:34.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35965, sync = True, waitForSettling = True)
17-03-18 06:51:34.854 -07 000000610 INF: Z Motor: Moving to -0.164637 mm, started at -0.165453 mm, distance = 0.82 um
17-03-18 06:51:34.854 -07 000000610 INF: FPGA: Xmit ZDACW 35965\n [Z Motor]
17-03-18 06:51:34.854 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 06:51:34.864 -07 000000610 INF: FPGA: 'ZDACW 35965' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:51:34.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:34.864 -07 000000611 INF: FPGA: Recv ZDACR 35965
17-03-18 06:51:34.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:34.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:35.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:35.024 -07 000000479 INF: FPGA: Recv ZSGSRD 34914
17-03-18 06:51:35.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:35.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:35.034 -07 000000447 INF: FPGA: Recv ZSGSRD 34926
17-03-18 06:51:35.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:35.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:35.044 -07 000000447 INF: FPGA: Recv ZSGSRD 34918
17-03-18 06:51:35.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:35.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:35.054 -07 000000474 INF: FPGA: Recv ZSGSRD 34920
17-03-18 06:51:35.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:35.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:35.064 -07 000000447 INF: FPGA: Recv ZSGSRD 34921
17-03-18 06:51:35.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:35.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:35.074 -07 000000447 INF: FPGA: Recv ZSGSRD 34916
17-03-18 06:51:35.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:35.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:35.084 -07 000000479 INF: FPGA: Recv ZSGSRD 34919
17-03-18 06:51:35.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:35.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:35.094 -07 000000447 INF: FPGA: Recv ZSGSRD 34917
17-03-18 06:51:35.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:35.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:35.104 -07 000000479 INF: FPGA: Recv ZSGSRD 34915
17-03-18 06:51:35.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:35.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:35.114 -07 000000479 INF: FPGA: Recv ZSGSRD 34916
17-03-18 06:51:35.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:35.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:35.124 -07 000000447 INF: FPGA: Recv ZPIEZORD 30563
17-03-18 06:51:35.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:35.134 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.488 V. Piezo Error = -9.6 V.
17-03-18 06:51:35.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.6 um, Read 10 ADC samples: Avg = 34918 (-163.8 uncal um), Error = 0.9 uncal um, Median = 34918 (-163.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34914 (-163.8 uncal um), Max = 34926 (-163.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:51:35.134 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34918, posNoise = 8, negNoise = 4
17-03-18 06:51:35.134 -07 000000610 INF: Z Motor: After move to -0.164637, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:35.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:51:35.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:35.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:35.134 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:35.134 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:35.134 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:35.134 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:35.134 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:35.134 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:35.134 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:35.134 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:35.134 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:51:35.134 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:35.144 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:51:35.144 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:35.144 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:51:35.144 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:35.154 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:51:35.154 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:51:35.154 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:51:35.154 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:51:35.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36142 150\n [Camera]
17-03-18 06:51:35.364 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:35.824 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:35.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:35.834 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:35.834 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:35.834 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:51:35.834 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:35.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:35.834 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:35.834 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:35.834 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:51:36.204 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:51:36.204 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:51:36.204 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:36.204 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:51:36.204 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:51:36.204 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:36.214 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:36.214 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:51:36.214 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:36.224 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:51:36.224 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36142 853
17-03-18 06:51:36.224 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:51:36.394 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:51:36.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:51:36.394 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:36.394 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:36.394 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:51:36.404 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:51:36.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:51:36.404 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:36.404 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:36.404 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:51:36.584 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-18 06:51:36.594 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:36.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36142 150' command took 2 ms to send, 1421 ms to get response, and 1430 ms overall
17-03-18 06:51:36.784 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:51:36.784 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:51:36.784 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:36.784 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:51:36.784 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:51:36.784 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:36.784 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:36.784 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:51:36.784 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:51:36.784 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:36.794 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:51:36.834 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-18 06:51:36.834 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:51:36.874 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 06:51:36.874 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 06:51:36.874 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:51:36.874 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 06:51:36.884 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:36.884 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 06:51:36.904 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:51:36.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:51:37.164 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.011254,
17-03-18 06:51:37.384 -07 000000447 INF: FPGA: Recv EMIN
17-03-18 06:51:37.384 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:51:37.384 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 06:51:37.384 -07 000000461 INF: FPGA: Recv EMCUR 
17-03-18 06:51:37.394 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:37.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:51:37.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164643991577144. ------
17-03-18 06:51:37.394 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:51:37.394 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13920 mm
17-03-18 06:51:37.394 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:37.394 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 30409, sync = True, waitForSettling = False)
17-03-18 06:51:37.394 -07 000000590 INF: Z Motor: Moving to -0.139203 mm, started at -0.164644 mm, distance = 25.44 um
17-03-18 06:51:37.394 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:51:37.394 -07 000000455 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 06:51:37.404 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:51:37.404 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:51:37.404 -07 000000590 INF: FPGA: Xmit ZDACW 30409\n [Z Motor]
17-03-18 06:51:37.404 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:51:37.414 -07 000000590 INF: FPGA: 'ZDACW 30409' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:37.414 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:51:37.424 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:37.424 -07 000000585 INF: FPGA: Recv YRDPOS 153255
17-03-18 06:51:37.434 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:37.434 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:51:37.434 -07 000000455 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:37.434 -07 000000585 INF: FPGA: Recv ZDACR 30409
17-03-18 06:51:37.444 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:51:37.444 -07 000000590 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:51:37.444 -07 000000455 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 06:51:37.444 -07 000000455 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:51:37.444 -07 000000455 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:51:37.614 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:51:37.614 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 06:51:39.074 -07 000000590 INF: FPGA: Recv YMVTO 122702 23903
17-03-18 06:51:39.074 -07 000000455 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1620 ms to get response, and 1628 ms overall
17-03-18 06:51:39.074 -07 000000455 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 06:51:39.074 -07 000000455 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 06:51:39.074 -07 000000455 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1628 ms, distance = 14.918 mm, average velocity = 9.163 mm/sec
17-03-18 06:51:41.904 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:51:41.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:51:41.924 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:41.924 -07 000000480 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:51:41.934 -07 000000455 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:41.934 -07 000000455 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:41.974 -07 000000455 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:41.974 -07 000000455 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 06:51:41.974 -07 000000455 INF: Y Motor: Moved to 59.9102 after 4573 ms
17-03-18 06:51:41.974 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139203 mm (DAC = 30409)
17-03-18 06:51:41.974 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:41.974 -07 000000585 INF: FPGA: Recv ZSGSRD 30963
17-03-18 06:51:41.984 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:51:41.984 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:41.984 -07 000000462 INF: FPGA: Recv ZSGSRD 30955
17-03-18 06:51:41.994 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:41.994 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:41.994 -07 000000455 INF: FPGA: Recv ZSGSRD 30960
17-03-18 06:51:42.004 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:42.004 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:42.814 -07 000000480 INF: FPGA: Recv ZSGSRD 30958
17-03-18 06:51:42.814 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 800 ms to get response, and 810 ms overall
17-03-18 06:51:42.814 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:42.814 -07 000000479 INF: FPGA: Recv ZSGSRD 30969
17-03-18 06:51:42.824 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:51:42.824 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:42.824 -07 000000012 INF: FPGA: Recv ZSGSRD 30958
17-03-18 06:51:42.834 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:42.834 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:42.834 -07 000000430 INF: FPGA: Recv ZSGSRD 30953
17-03-18 06:51:42.844 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:42.844 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:42.844 -07 000000455 INF: FPGA: Recv ZSGSRD 30957
17-03-18 06:51:42.854 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:42.854 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:42.854 -07 000000430 INF: FPGA: Recv ZSGSRD 30964
17-03-18 06:51:42.864 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:42.864 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:42.864 -07 000000455 INF: FPGA: Recv ZSGSRD 30959
17-03-18 06:51:42.874 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:42.874 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:42.874 -07 000000430 INF: FPGA: Recv ZPIEZORD 26411
17-03-18 06:51:42.884 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:42.884 -07 000000608 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -10.0 V.
17-03-18 06:51:42.884 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30960 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30958 (-138.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30953 (-138.4 uncal um), Max = 30969 (-138.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:51:42.884 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30960, posNoise = 9, negNoise = 7
17-03-18 06:51:42.884 -07 000000608 INF: Z Motor: After move to -0.139203, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:42.884 -07 000000608 INF: Z Motor: Settle wait time = 4577 ms, measure time = 904 ms (allowed 150 ms), total time = 5481 ms
17-03-18 06:51:42.884 -07 000000608 INF: Z Motor: Warning: Actual position measuring time = 904 ms, longer than max expected time of 150 ms
17-03-18 06:51:42.884 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5484 ms
17-03-18 06:51:42.884 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:42.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:42.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:42.884 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:42.884 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:42.884 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:51:42.884 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:42.894 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:42.894 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:51:42.914 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 06:51:42.914 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:51:42.914 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:51:42.914 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:51:42.924 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:51:42.924 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 06:51:42.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:51:42.964 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:51:43.124 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.014009,
17-03-18 06:51:43.264 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:51:43.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:51:43.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:51:43.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) start.
17-03-18 06:51:43.304 -07 000000479 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:51:43.304 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 06:51:43.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:51:43.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:51:43.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:43.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:51:43.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:51:43.504 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:51:43.504 -07 000000590 INF: Image SNR check: start
17-03-18 06:51:43.504 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:51:43.514 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:43.514 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:51:43.514 -07 000000590 INF: Image SNR check: pass  [peak (Max-Min)=108.35]
17-03-18 06:51:43.514 -07 000000590 INF: Autofocus start
17-03-18 06:51:43.514 -07 000000590 INF: MeasureProfile start
17-03-18 06:51:43.534 -07 000000590 INF: MeasureProfile done
17-03-18 06:51:43.534 -07 000000590 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:51:43.534 -07 000000590 INF: Autofocus finished
17-03-18 06:51:43.714 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:51:43.714 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:51:43.714 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139216959920054. ----------
17-03-18 06:51:43.724 -07 000000610 INF: Cycle	154	Tile	1	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:43.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28950, sync = True, waitForSettling = True)
17-03-18 06:51:43.724 -07 000000610 INF: Z Motor: Moving to -0.132525 mm, started at -0.139217 mm, distance = 6.69 um
17-03-18 06:51:43.724 -07 000000610 INF: FPGA: Xmit ZDACW 28950\n [Z Motor]
17-03-18 06:51:43.724 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:51:43.734 -07 000000610 INF: FPGA: 'ZDACW 28950' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:43.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:43.734 -07 000000590 INF: FPGA: Recv ZDACR 28950
17-03-18 06:51:43.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:43.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:43.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:43.894 -07 000000012 INF: FPGA: Recv ZSGSRD 29923
17-03-18 06:51:43.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:43.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:43.904 -07 000000455 INF: FPGA: Recv ZSGSRD 29921
17-03-18 06:51:43.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:43.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:43.914 -07 000000608 INF: FPGA: Recv ZSGSRD 29914
17-03-18 06:51:43.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:43.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:43.924 -07 000000480 INF: FPGA: Recv ZSGSRD 29919
17-03-18 06:51:43.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:43.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:43.934 -07 000000430 INF: FPGA: Recv ZSGSRD 29921
17-03-18 06:51:43.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:43.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:43.944 -07 000000608 INF: FPGA: Recv ZSGSRD 29919
17-03-18 06:51:43.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:43.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:43.954 -07 000000455 INF: FPGA: Recv ZSGSRD 29916
17-03-18 06:51:43.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:43.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:43.964 -07 000000480 INF: FPGA: Recv ZSGSRD 29919
17-03-18 06:51:43.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:43.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:43.974 -07 000000430 INF: FPGA: Recv ZSGSRD 29922
17-03-18 06:51:43.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:43.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:43.984 -07 000000608 INF: FPGA: Recv ZSGSRD 29914
17-03-18 06:51:43.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:43.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:43.994 -07 000000012 INF: FPGA: Recv ZPIEZORD 25299
17-03-18 06:51:44.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:44.004 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -10.1 V.
17-03-18 06:51:44.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29919 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29919 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29914 (-131.7 uncal um), Max = 29923 (-131.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:51:44.004 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29919, posNoise = 4, negNoise = 5
17-03-18 06:51:44.004 -07 000000610 INF: Z Motor: After move to -0.132525, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:44.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:51:44.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:44.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:44.004 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:44.004 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:44.004 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:44.004 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:44.004 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:44.004 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:44.004 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:44.004 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:44.004 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:51:44.004 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:51:44.004 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:51:44.004 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:44.014 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:51:44.024 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:51:44.024 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 06:51:44.024 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:44.024 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:51:44.034 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:44.034 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:51:44.034 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 06:51:44.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 29127 150\n [Camera]
17-03-18 06:51:44.234 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:44.704 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:44.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:44.704 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:44.704 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:44.704 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:51:44.714 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:44.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:44.714 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:44.714 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:44.714 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:51:44.904 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29127 853
17-03-18 06:51:45.054 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:51:45.114 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:51:45.114 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:51:45.114 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:45.114 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:51:45.114 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:51:45.114 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:45.114 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:45.114 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:51:45.114 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:45.124 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:51:45.274 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:51:45.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:51:45.274 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:45.274 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:45.274 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:51:45.274 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:51:45.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:51:45.284 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:45.284 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:45.284 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:51:45.464 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-18 06:51:45.464 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:45.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 29127 150' command took 2 ms to send, 1418 ms to get response, and 1428 ms overall
17-03-18 06:51:45.474 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.132924
17-03-18 06:51:45.474 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13292 mm
17-03-18 06:51:45.474 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:45.474 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:51:45.474 -07 000000012 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 06:51:45.474 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:45.474 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29037, sync = True, waitForSettling = False)
17-03-18 06:51:45.474 -07 000000480 INF: Z Motor: Moving to -0.132923 mm, started at -0.132529 mm, distance = -0.39 um
17-03-18 06:51:45.474 -07 000000590 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:51:45.484 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:45.484 -07 000000012 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:45.484 -07 000000012 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:45.484 -07 000000012 INF: Y Motor: Moving 1332 steps1
17-03-18 06:51:45.484 -07 000000480 INF: FPGA: Xmit ZDACW 29037\n [Z Motor]
17-03-18 06:51:45.484 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:51:45.494 -07 000000480 INF: FPGA: 'ZDACW 29037' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:51:45.494 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:45.494 -07 000000444 INF: FPGA: Recv ZDACR 29037
17-03-18 06:51:45.504 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:45.504 -07 000000480 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 06:51:45.504 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:45.684 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 06:51:45.684 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:51:45.684 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:45.684 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:51:45.684 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:51:45.684 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:45.684 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:45.684 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:51:45.684 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:45.694 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 06:51:45.874 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 06:51:45.874 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 06:51:45.924 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:45.924 -07 000000608 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:51:45.934 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:45.934 -07 000000012 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:45.934 -07 000000012 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:51:45.934 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.092 mm/sec
17-03-18 06:51:46.884 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:46.884 -07 000000480 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:51:46.894 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:46.894 -07 000000012 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:46.904 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:51:46.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:51:46.924 -07 000000012 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:46.924 -07 000000012 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:51:46.924 -07 000000012 INF: Y Motor: Moved to 60.7324 after 1452 ms (table move)
17-03-18 06:51:46.924 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132923 mm (DAC = 29037)
17-03-18 06:51:46.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:46.934 -07 000000608 INF: FPGA: Recv ZSGSRD 29972
17-03-18 06:51:46.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:51:46.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:46.934 -07 000000608 INF: FPGA: Recv ZSGSRD 29981
17-03-18 06:51:46.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:51:46.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:46.944 -07 000000012 INF: FPGA: Recv ZSGSRD 29974
17-03-18 06:51:46.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:46.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:46.954 -07 000000480 INF: FPGA: Recv ZSGSRD 29975
17-03-18 06:51:46.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:46.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:46.964 -07 000000012 INF: FPGA: Recv ZSGSRD 29983
17-03-18 06:51:46.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:46.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:46.974 -07 000000608 INF: FPGA: Recv ZSGSRD 29982
17-03-18 06:51:46.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:46.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:46.984 -07 000000430 INF: FPGA: Recv ZSGSRD 29984
17-03-18 06:51:46.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:46.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:46.994 -07 000000480 INF: FPGA: Recv ZSGSRD 29972
17-03-18 06:51:47.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:47.004 -07 000000012 INF: FPGA: Recv ZSGSRD 29982
17-03-18 06:51:47.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:47.014 -07 000000479 INF: FPGA: Recv ZSGSRD 29986
17-03-18 06:51:47.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:47.024 -07 000000455 INF: FPGA: Recv ZPIEZORD 25431
17-03-18 06:51:47.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.034 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.431 V. Piezo Error = -10.0 V.
17-03-18 06:51:47.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29979 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29982 (-132.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29972 (-132.1 uncal um), Max = 29986 (-132.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:51:47.034 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29979, posNoise = 7, negNoise = 7
17-03-18 06:51:47.034 -07 000000610 INF: Z Motor: After move to -0.132923, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:47.034 -07 000000610 INF: Z Motor: Settle wait time = 1454 ms, measure time = 102 ms (allowed 150 ms), total time = 1556 ms
17-03-18 06:51:47.034 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:47.084 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 06:51:47.084 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:47.084 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.132914807808987. ----------
17-03-18 06:51:47.084 -07 000000610 INF: Cycle	154	Tile	2	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:47.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28861, sync = True, waitForSettling = True)
17-03-18 06:51:47.084 -07 000000610 INF: Z Motor: Moving to -0.132117 mm, started at -0.132915 mm, distance = 0.80 um
17-03-18 06:51:47.084 -07 000000610 INF: FPGA: Xmit ZDACW 28861\n [Z Motor]
17-03-18 06:51:47.084 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:51:47.094 -07 000000610 INF: FPGA: 'ZDACW 28861' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:51:47.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:47.094 -07 000000480 INF: FPGA: Recv ZDACR 28861
17-03-18 06:51:47.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:47.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:47.254 -07 000000430 INF: FPGA: Recv ZSGSRD 29855
17-03-18 06:51:47.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:47.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:47.264 -07 000000444 INF: FPGA: Recv ZSGSRD 29854
17-03-18 06:51:47.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:47.274 -07 000000012 INF: FPGA: Recv ZSGSRD 29854
17-03-18 06:51:47.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:47.284 -07 000000479 INF: FPGA: Recv ZSGSRD 29853
17-03-18 06:51:47.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:47.294 -07 000000590 INF: FPGA: Recv ZSGSRD 29857
17-03-18 06:51:47.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:47.304 -07 000000479 INF: FPGA: Recv ZSGSRD 29859
17-03-18 06:51:47.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:47.314 -07 000000590 INF: FPGA: Recv ZSGSRD 29857
17-03-18 06:51:47.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:51:47.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:47.324 -07 000000430 INF: FPGA: Recv ZSGSRD 29858
17-03-18 06:51:47.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:47.334 -07 000000590 INF: FPGA: Recv ZSGSRD 29855
17-03-18 06:51:47.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:47.344 -07 000000430 INF: FPGA: Recv ZSGSRD 29850
17-03-18 06:51:47.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:47.354 -07 000000590 INF: FPGA: Recv ZPIEZORD 25280
17-03-18 06:51:47.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:47.364 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -10.0 V.
17-03-18 06:51:47.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29855 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29855 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29850 (-131.3 uncal um), Max = 29859 (-131.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:51:47.364 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29855, posNoise = 4, negNoise = 5
17-03-18 06:51:47.364 -07 000000610 INF: Z Motor: After move to -0.132117, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:47.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:51:47.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:47.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:47.364 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:47.364 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:47.364 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:47.364 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:47.364 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:47.364 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:47.364 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:51:47.364 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:47.364 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:47.364 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:47.364 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:51:47.364 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:47.374 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:51:47.374 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:47.374 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:51:47.374 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:51:47.374 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:51:47.374 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:51:47.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 29037 150\n [Camera]
17-03-18 06:51:47.584 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:48.054 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:48.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:48.054 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:48.054 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:48.054 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:51:48.054 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:48.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:48.054 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:48.054 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:48.054 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 06:51:48.244 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29037 853
17-03-18 06:51:48.394 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:51:48.434 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:51:48.434 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:51:48.434 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:48.434 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:51:48.434 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:51:48.434 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:48.434 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:48.444 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:48.444 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:51:48.444 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:51:48.494 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.003063,
17-03-18 06:51:48.614 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:51:48.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:51:48.624 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:48.624 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:48.624 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 06:51:48.624 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:51:48.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:51:48.624 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:48.624 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:48.624 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:51:48.814 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:51:48.814 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:48.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 29037 150' command took 2 ms to send, 1421 ms to get response, and 1427 ms overall
17-03-18 06:51:48.814 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133028
17-03-18 06:51:48.814 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13303 mm
17-03-18 06:51:48.814 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:48.814 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:51:48.814 -07 000000444 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 06:51:48.824 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:49.024 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:51:49.024 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:51:49.024 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:49.024 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 06:51:49.024 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:51:49.024 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:49.024 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:51:49.024 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:51:49.034 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:49.034 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:51:49.044 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29060, sync = True, waitForSettling = False)
17-03-18 06:51:49.044 -07 000000012 INF: Z Motor: Moving to -0.133028 mm, started at -0.132118 mm, distance = -0.91 um
17-03-18 06:51:49.044 -07 000000012 INF: FPGA: Xmit ZDACW 29060\n [Z Motor]
17-03-18 06:51:49.044 -07 000000430 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:51:49.044 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:51:49.044 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 217 ms to get response, and 231 ms overall
17-03-18 06:51:49.044 -07 000000444 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:49.044 -07 000000444 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:49.044 -07 000000444 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:51:49.054 -07 000000012 INF: FPGA: 'ZDACW 29060' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:49.054 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:49.074 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:49.074 -07 000000430 INF: FPGA: Recv ZDACR 29060
17-03-18 06:51:49.084 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:51:49.084 -07 000000012 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 06:51:49.424 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 06:51:49.424 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 06:51:49.474 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:49.484 -07 000000012 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:51:49.484 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:51:49.484 -07 000000444 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:49.484 -07 000000444 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:51:49.484 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.840 mm, average velocity = 2.211 mm/sec
17-03-18 06:51:50.434 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:50.434 -07 000000012 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:51:50.444 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.444 -07 000000444 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:50.474 -07 000000444 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:50.474 -07 000000444 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:51:50.474 -07 000000444 INF: Y Motor: Moved to 61.5630 after 1656 ms (table move)
17-03-18 06:51:50.474 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133028 mm (DAC = 29060)
17-03-18 06:51:50.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.474 -07 000000474 INF: FPGA: Recv ZSGSRD 30007
17-03-18 06:51:50.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:51:50.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.484 -07 000000501 INF: FPGA: Recv ZSGSRD 30003
17-03-18 06:51:50.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.494 -07 000000611 INF: FPGA: Recv ZSGSRD 29985
17-03-18 06:51:50.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.504 -07 000000447 INF: FPGA: Recv ZSGSRD 29995
17-03-18 06:51:50.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.514 -07 000000611 INF: FPGA: Recv ZSGSRD 29997
17-03-18 06:51:50.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.524 -07 000000012 INF: FPGA: Recv ZSGSRD 29994
17-03-18 06:51:50.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.534 -07 000000501 INF: FPGA: Recv ZSGSRD 29997
17-03-18 06:51:50.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.544 -07 000000430 INF: FPGA: Recv ZSGSRD 29989
17-03-18 06:51:50.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.554 -07 000000012 INF: FPGA: Recv ZSGSRD 29999
17-03-18 06:51:50.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.564 -07 000000474 INF: FPGA: Recv ZSGSRD 30007
17-03-18 06:51:50.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:50.574 -07 000000447 INF: FPGA: Recv ZPIEZORD 25535
17-03-18 06:51:50.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.584 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.434 V. Piezo Error = -9.8 V.
17-03-18 06:51:50.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29997 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29997 (-132.2 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 29985 (-132.2 uncal um), Max = 30007 (-132.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 06:51:50.584 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29997, posNoise = 10, negNoise = 12
17-03-18 06:51:50.584 -07 000000610 INF: Z Motor: After move to -0.133028, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:50.584 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 105 ms (allowed 150 ms), total time = 1539 ms
17-03-18 06:51:50.584 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:50.634 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1816 ms
17-03-18 06:51:50.634 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:50.634 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.133030443627538. ----------
17-03-18 06:51:50.634 -07 000000610 INF: Cycle	154	Tile	3	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:50.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28883, sync = True, waitForSettling = True)
17-03-18 06:51:50.634 -07 000000610 INF: Z Motor: Moving to -0.132218 mm, started at -0.133030 mm, distance = 0.81 um
17-03-18 06:51:50.634 -07 000000610 INF: FPGA: Xmit ZDACW 28883\n [Z Motor]
17-03-18 06:51:50.634 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:51:50.644 -07 000000610 INF: FPGA: 'ZDACW 28883' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:51:50.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:50.644 -07 000000501 INF: FPGA: Recv ZDACR 28883
17-03-18 06:51:50.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:50.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.804 -07 000000012 INF: FPGA: Recv ZSGSRD 29880
17-03-18 06:51:50.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:50.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.814 -07 000000430 INF: FPGA: Recv ZSGSRD 29870
17-03-18 06:51:50.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.824 -07 000000474 INF: FPGA: Recv ZSGSRD 29868
17-03-18 06:51:50.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.834 -07 000000611 INF: FPGA: Recv ZSGSRD 29868
17-03-18 06:51:50.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.844 -07 000000012 INF: FPGA: Recv ZSGSRD 29868
17-03-18 06:51:50.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.854 -07 000000501 INF: FPGA: Recv ZSGSRD 29874
17-03-18 06:51:50.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.864 -07 000000474 INF: FPGA: Recv ZSGSRD 29874
17-03-18 06:51:50.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.874 -07 000000501 INF: FPGA: Recv ZSGSRD 29870
17-03-18 06:51:50.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.884 -07 000000474 INF: FPGA: Recv ZSGSRD 29875
17-03-18 06:51:50.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:50.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29868
17-03-18 06:51:50.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:50.904 -07 000000012 INF: FPGA: Recv ZPIEZORD 25368
17-03-18 06:51:50.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:50.914 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.9 V.
17-03-18 06:51:50.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29872 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29870 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29868 (-131.4 uncal um), Max = 29880 (-131.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:51:50.914 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29872, posNoise = 8, negNoise = 4
17-03-18 06:51:50.914 -07 000000610 INF: Z Motor: After move to -0.132218, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:50.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:51:50.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:50.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:50.914 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:50.914 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:50.914 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:50.914 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:50.914 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:50.914 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:50.914 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:50.914 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:50.914 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:51:50.914 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:50.914 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:51:50.924 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:50.924 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:51:50.924 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:50.924 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:51:50.924 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:51:50.924 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:51:50.924 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:51:50.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 29060 150\n [Camera]
17-03-18 06:51:51.134 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:51.604 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:51.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:51.604 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:51.604 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:51.604 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 06:51:51.604 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:51.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:51.604 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:51.604 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:51.604 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 06:51:51.794 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29060 853
17-03-18 06:51:51.904 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:51:51.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:51:51.944 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:51:51.984 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:51:51.984 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:51:51.984 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:51.984 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:51:51.984 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:51:51.984 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:51.984 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:51:51.984 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:51:51.984 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:51:51.994 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:51:52.164 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:51:52.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:51:52.164 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:52.164 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:52.174 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 06:51:52.174 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:51:52.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:51:52.174 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:52.174 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:52.174 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 06:51:52.354 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-18 06:51:52.364 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:52.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 29060 150' command took 2 ms to send, 1420 ms to get response, and 1427 ms overall
17-03-18 06:51:52.364 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.132568
17-03-18 06:51:52.364 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13257 mm
17-03-18 06:51:52.364 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:52.364 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:51:52.364 -07 000000585 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 06:51:52.364 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:52.364 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 28959, sync = True, waitForSettling = False)
17-03-18 06:51:52.364 -07 000000430 INF: Z Motor: Moving to -0.132566 mm, started at -0.132227 mm, distance = -0.34 um
17-03-18 06:51:52.374 -07 000000430 INF: FPGA: Xmit ZDACW 28959\n [Z Motor]
17-03-18 06:51:52.544 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:51:52.544 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:51:52.544 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:52.554 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:52.554 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:51:52.554 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:51:52.554 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:52.554 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:52.554 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:51:52.554 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:51:53.204 -07 000000462 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:51:53.204 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:51:53.204 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 830 ms to get response, and 835 ms overall
17-03-18 06:51:53.204 -07 000000585 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:53.204 -07 000000585 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:53.204 -07 000000585 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:51:53.204 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:53.204 -07 000000430 INF: FPGA: 'ZDACW 28959' command took 0 ms to send, 820 ms to get response, and 835 ms overall
17-03-18 06:51:53.214 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:53.214 -07 000000501 INF: FPGA: Recv ZDACR 28959
17-03-18 06:51:53.224 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:51:53.224 -07 000000430 INF: Z Motor: MoveAbsStepped took 854 ms (did NOT wait for settling yet))
17-03-18 06:51:53.574 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:51:53.574 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 06:51:53.634 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:53.634 -07 000000611 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:51:53.644 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:51:53.644 -07 000000585 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:53.644 -07 000000585 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:51:53.644 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.221 mm/sec
17-03-18 06:51:53.854 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.018051,
17-03-18 06:51:54.594 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:54.594 -07 000000462 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:51:54.604 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:54.604 -07 000000585 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:54.634 -07 000000585 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:54.634 -07 000000585 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:51:54.634 -07 000000585 INF: Y Motor: Moved to 62.3945 after 2267 ms (table move)
17-03-18 06:51:54.634 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132566 mm (DAC = 28959)
17-03-18 06:51:54.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.634 -07 000000462 INF: FPGA: Recv ZSGSRD 29929
17-03-18 06:51:54.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:51:54.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.644 -07 000000606 INF: FPGA: Recv ZSGSRD 29923
17-03-18 06:51:54.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:54.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.654 -07 000000590 INF: FPGA: Recv ZSGSRD 29924
17-03-18 06:51:54.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:54.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.664 -07 000000606 INF: FPGA: Recv ZSGSRD 29920
17-03-18 06:51:54.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:54.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.674 -07 000000447 INF: FPGA: Recv ZSGSRD 29934
17-03-18 06:51:54.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:54.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.684 -07 000000606 INF: FPGA: Recv ZSGSRD 29933
17-03-18 06:51:54.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:54.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.694 -07 000000462 INF: FPGA: Recv ZSGSRD 29918
17-03-18 06:51:54.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:54.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.704 -07 000000590 INF: FPGA: Recv ZSGSRD 29921
17-03-18 06:51:54.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:54.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.714 -07 000000430 INF: FPGA: Recv ZSGSRD 29922
17-03-18 06:51:54.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:54.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.724 -07 000000606 INF: FPGA: Recv ZSGSRD 29925
17-03-18 06:51:54.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:54.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:54.734 -07 000000430 INF: FPGA: Recv ZPIEZORD 25461
17-03-18 06:51:54.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:54.744 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -9.8 V.
17-03-18 06:51:54.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29925 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29924 (-131.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29918 (-131.7 uncal um), Max = 29934 (-131.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:51:54.744 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29925, posNoise = 9, negNoise = 7
17-03-18 06:51:54.744 -07 000000610 INF: Z Motor: After move to -0.132566, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:54.744 -07 000000610 INF: Z Motor: Settle wait time = 2270 ms, measure time = 105 ms (allowed 150 ms), total time = 2375 ms
17-03-18 06:51:54.744 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:54.794 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2427 ms
17-03-18 06:51:54.794 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:54.794 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.132567900353332. ----------
17-03-18 06:51:54.794 -07 000000610 INF: Cycle	154	Tile	4	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:54.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28783, sync = True, waitForSettling = True)
17-03-18 06:51:54.794 -07 000000610 INF: Z Motor: Moving to -0.131760 mm, started at -0.132568 mm, distance = 0.81 um
17-03-18 06:51:54.794 -07 000000610 INF: FPGA: Xmit ZDACW 28783\n [Z Motor]
17-03-18 06:51:54.794 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:51:54.804 -07 000000610 INF: FPGA: 'ZDACW 28783' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:51:54.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:54.804 -07 000000447 INF: FPGA: Recv ZDACR 28783
17-03-18 06:51:54.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:54.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:54.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.964 -07 000000585 INF: FPGA: Recv ZSGSRD 29803
17-03-18 06:51:54.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:54.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.974 -07 000000447 INF: FPGA: Recv ZSGSRD 29803
17-03-18 06:51:54.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:54.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.984 -07 000000590 INF: FPGA: Recv ZSGSRD 29797
17-03-18 06:51:54.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:54.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:54.994 -07 000000590 INF: FPGA: Recv ZSGSRD 29798
17-03-18 06:51:55.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:55.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:55.004 -07 000000447 INF: FPGA: Recv ZSGSRD 29805
17-03-18 06:51:55.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:55.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:55.014 -07 000000590 INF: FPGA: Recv ZSGSRD 29806
17-03-18 06:51:55.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:55.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:55.024 -07 000000590 INF: FPGA: Recv ZSGSRD 29791
17-03-18 06:51:55.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:55.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:55.034 -07 000000590 INF: FPGA: Recv ZSGSRD 29795
17-03-18 06:51:55.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:55.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:55.044 -07 000000447 INF: FPGA: Recv ZSGSRD 29800
17-03-18 06:51:55.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:55.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:55.054 -07 000000590 INF: FPGA: Recv ZSGSRD 29799
17-03-18 06:51:55.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:55.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:55.064 -07 000000447 INF: FPGA: Recv ZPIEZORD 25301
17-03-18 06:51:55.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:55.074 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.9 V.
17-03-18 06:51:55.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29800 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29800 (-131.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29791 (-130.9 uncal um), Max = 29806 (-131.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:51:55.074 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29800, posNoise = 6, negNoise = 9
17-03-18 06:51:55.074 -07 000000610 INF: Z Motor: After move to -0.131760, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:55.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:51:55.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:55.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:55.074 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:55.074 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:55.074 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:55.074 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:55.074 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:55.074 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:55.074 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:55.074 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:55.074 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:51:55.074 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:55.074 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:51:55.074 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:55.084 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:51:55.084 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:55.084 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:51:55.084 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:51:55.094 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:51:55.094 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:51:55.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28959 150\n [Camera]
17-03-18 06:51:55.294 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:55.764 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:55.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:55.764 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:55.764 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:55.764 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-18 06:51:55.764 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:55.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:55.764 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:55.764 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:55.764 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-18 06:51:55.954 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28959 853
17-03-18 06:51:56.104 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:51:56.144 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:51:56.144 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:51:56.144 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:56.144 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:51:56.144 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:51:56.144 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:56.154 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:51:56.154 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:51:56.154 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:51:56.164 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:51:56.334 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1230
17-03-18 06:51:56.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1230
17-03-18 06:51:56.334 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:56.334 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:56.334 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) start.
17-03-18 06:51:56.334 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:51:56.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:51:56.474 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:56.484 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:56.484 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:51:56.514 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:51:56.524 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:51:56.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28959 150' command took 2 ms to send, 1420 ms to get response, and 1427 ms overall
17-03-18 06:51:56.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:51:56.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.131764873835612. ------
17-03-18 06:51:56.524 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13831 mm
17-03-18 06:51:56.524 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:51:56.524 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:51:56.524 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:51:56.524 -07 000000480 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 06:51:56.524 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30214, sync = True, waitForSettling = False)
17-03-18 06:51:56.524 -07 000000606 INF: Z Motor: Moving to -0.138311 mm, started at -0.131765 mm, distance = -6.55 um
17-03-18 06:51:56.524 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:51:56.534 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:51:56.534 -07 000000606 INF: FPGA: Xmit ZDACW 30214\n [Z Motor]
17-03-18 06:51:56.534 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:51:56.544 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:56.544 -07 000000606 INF: FPGA: 'ZDACW 30214' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:56.544 -07 000000455 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:51:56.554 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:51:56.554 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:51:56.554 -07 000000480 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:56.554 -07 000000480 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:51:56.554 -07 000000480 INF: Y Motor: Moving 1340 steps-17
17-03-18 06:51:56.564 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:56.564 -07 000000479 INF: FPGA: Recv ZDACR 30214
17-03-18 06:51:56.574 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:51:56.574 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:51:56.574 -07 000000606 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 06:51:56.734 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 06:51:56.734 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:51:56.734 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:56.744 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:51:56.744 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:51:56.754 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:51:56.754 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:51:56.864 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:51:56.864 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:51:56.864 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:56.864 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:51:56.874 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:51:56.904 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:51:56.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:51:56.944 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 06:51:56.944 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 06:51:57.004 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:57.004 -07 000000455 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:51:57.014 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:57.014 -07 000000480 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:57.014 -07 000000480 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:51:57.014 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.138 mm/sec
17-03-18 06:51:57.964 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:51:57.964 -07 000000430 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:51:57.974 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:51:57.974 -07 000000480 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:51:58.004 -07 000000480 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:51:58.004 -07 000000480 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:51:58.004 -07 000000480 INF: Y Motor: Moved to 63.2231 after 1475 ms (table move)
17-03-18 06:51:58.004 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138311 mm (DAC = 30214)
17-03-18 06:51:58.004 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:58.014 -07 000000455 INF: FPGA: Recv ZSGSRD 30818
17-03-18 06:51:58.014 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:51:58.014 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:58.014 -07 000000606 INF: FPGA: Recv ZSGSRD 30824
17-03-18 06:51:58.024 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:58.024 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:58.024 -07 000000461 INF: FPGA: Recv ZSGSRD 30821
17-03-18 06:51:58.034 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:58.034 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:58.034 -07 000000611 INF: FPGA: Recv ZSGSRD 30820
17-03-18 06:51:58.044 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:58.044 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:58.044 -07 000000455 INF: FPGA: Recv ZSGSRD 30814
17-03-18 06:51:58.054 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:58.054 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:58.054 -07 000000461 INF: FPGA: Recv ZSGSRD 30816
17-03-18 06:51:58.064 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:58.064 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:58.064 -07 000000461 INF: FPGA: Recv ZSGSRD 30819
17-03-18 06:51:58.074 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:58.074 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:58.074 -07 000000461 INF: FPGA: Recv ZSGSRD 30819
17-03-18 06:51:58.084 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:58.084 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:58.084 -07 000000461 INF: FPGA: Recv ZSGSRD 30823
17-03-18 06:51:58.094 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:58.094 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:58.094 -07 000000480 INF: FPGA: Recv ZSGSRD 30828
17-03-18 06:51:58.104 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:58.104 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:58.104 -07 000000480 INF: FPGA: Recv ZPIEZORD 26613
17-03-18 06:51:58.114 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:58.114 -07 000000447 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.610 V. Piezo Error = -9.3 V.
17-03-18 06:51:58.114 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30820 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30820 (-137.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30814 (-137.5 uncal um), Max = 30828 (-137.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:51:58.114 -07 000000447 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30820, posNoise = 8, negNoise = 6
17-03-18 06:51:58.114 -07 000000447 INF: Z Motor: After move to -0.138311, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:58.114 -07 000000447 INF: Z Motor: Settle wait time = 1478 ms, measure time = 103 ms (allowed 150 ms), total time = 1581 ms
17-03-18 06:51:58.114 -07 000000447 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:51:58.164 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 06:51:58.164 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:51:58.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:58.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:58.164 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:58.164 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:58.164 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:51:58.164 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:58.164 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:58.164 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:51:58.174 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:51:58.174 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:51:58.174 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:51:58.174 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:51:58.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:51:58.224 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:51:58.524 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:51:58.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:51:58.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:51:58.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 06:51:58.564 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:51:58.564 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:51:58.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 06:51:58.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:51:58.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:51:58.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:51:58.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:51:58.664 -07 000000611 INF: Autofocus start
17-03-18 06:51:58.664 -07 000000611 INF: MeasureProfile start
17-03-18 06:51:58.664 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:51:58.664 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:51:58.674 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:51:58.674 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:51:58.674 -07 000000611 INF: MeasureProfile done
17-03-18 06:51:58.674 -07 000000611 INF: X=32  Z correction [um]=0.1299841
17-03-18 06:51:58.674 -07 000000611 INF: Autofocus finished
17-03-18 06:51:58.874 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:51:58.874 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:51:58.874 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.138317570220208. ----------
17-03-18 06:51:58.874 -07 000000610 INF: Cycle	154	Tile	5	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:51:58.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28755, sync = True, waitForSettling = True)
17-03-18 06:51:58.884 -07 000000610 INF: Z Motor: Moving to -0.131632 mm, started at -0.138318 mm, distance = 6.69 um
17-03-18 06:51:58.884 -07 000000610 INF: FPGA: Xmit ZDACW 28755\n [Z Motor]
17-03-18 06:51:58.884 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:51:58.894 -07 000000610 INF: FPGA: 'ZDACW 28755' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:51:58.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:51:58.904 -07 000000611 INF: FPGA: Recv ZDACR 28755
17-03-18 06:51:58.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:51:58.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:51:59.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:59.064 -07 000000462 INF: FPGA: Recv ZSGSRD 29778
17-03-18 06:51:59.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:59.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:59.074 -07 000000480 INF: FPGA: Recv ZSGSRD 29783
17-03-18 06:51:59.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:59.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:59.084 -07 000000480 INF: FPGA: Recv ZSGSRD 29780
17-03-18 06:51:59.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:59.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:59.094 -07 000000462 INF: FPGA: Recv ZSGSRD 29785
17-03-18 06:51:59.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:59.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:59.104 -07 000000462 INF: FPGA: Recv ZSGSRD 29777
17-03-18 06:51:59.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:59.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:59.114 -07 000000462 INF: FPGA: Recv ZSGSRD 29775
17-03-18 06:51:59.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:59.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:59.124 -07 000000480 INF: FPGA: Recv ZSGSRD 29781
17-03-18 06:51:59.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:59.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:59.134 -07 000000611 INF: FPGA: Recv ZSGSRD 29779
17-03-18 06:51:59.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:59.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:59.144 -07 000000480 INF: FPGA: Recv ZSGSRD 29782
17-03-18 06:51:59.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:59.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:51:59.154 -07 000000462 INF: FPGA: Recv ZSGSRD 29779
17-03-18 06:51:59.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:59.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:51:59.164 -07 000000480 INF: FPGA: Recv ZPIEZORD 25270
17-03-18 06:51:59.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:51:59.174 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.9 V.
17-03-18 06:51:59.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29780 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29780 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29775 (-130.8 uncal um), Max = 29785 (-130.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:51:59.174 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29780, posNoise = 5, negNoise = 5
17-03-18 06:51:59.174 -07 000000610 INF: Z Motor: After move to -0.131632, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:51:59.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 06:51:59.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:51:59.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:51:59.174 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:51:59.174 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:51:59.174 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:51:59.174 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:51:59.174 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:51:59.174 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:51:59.174 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:51:59.174 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:51:59.174 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:51:59.174 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:51:59.184 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:51:59.184 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:51:59.184 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:51:59.184 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:51:59.194 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:51:59.194 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:51:59.194 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:51:59.194 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:51:59.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28932 150\n [Camera]
17-03-18 06:51:59.214 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.007176,
17-03-18 06:51:59.394 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:51:59.864 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:51:59.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:51:59.864 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:51:59.864 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:51:59.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:51:59.864 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:51:59.864 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:51:59.864 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:51:59.874 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:51:59.874 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:52:00.054 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28932 853
17-03-18 06:52:00.204 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:00.264 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:52:00.264 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:52:00.264 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:00.264 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 06:52:00.264 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:52:00.264 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:00.264 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:00.264 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:52:00.274 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:00.274 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:52:00.434 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:00.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:00.434 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:00.434 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:00.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:00.434 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:00.554 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:00.554 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:52:00.554 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:00.554 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:52:00.624 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:52:00.624 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:00.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28932 150' command took 2 ms to send, 1423 ms to get response, and 1428 ms overall
17-03-18 06:52:00.624 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132068
17-03-18 06:52:00.624 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13207 mm
17-03-18 06:52:00.624 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:00.624 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:52:00.624 -07 000000444 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 06:52:00.624 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:00.624 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 28850, sync = True, waitForSettling = False)
17-03-18 06:52:00.624 -07 000000012 INF: Z Motor: Moving to -0.132067 mm, started at -0.131636 mm, distance = -0.43 um
17-03-18 06:52:00.634 -07 000000012 INF: FPGA: Xmit ZDACW 28850\n [Z Motor]
17-03-18 06:52:00.634 -07 000000501 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:52:00.634 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:52:00.634 -07 000000444 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:00.634 -07 000000444 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:00.634 -07 000000444 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:52:00.634 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:52:00.644 -07 000000012 INF: FPGA: 'ZDACW 28850' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:00.644 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:00.654 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:00.654 -07 000000590 INF: FPGA: Recv ZDACR 28850
17-03-18 06:52:00.664 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:52:00.664 -07 000000012 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 06:52:00.954 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:52:00.954 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:52:00.954 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:00.954 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:52:00.954 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:52:00.954 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:00.954 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:00.954 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 06:52:00.954 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:00.964 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-18 06:52:01.014 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:52:01.014 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 06:52:01.064 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:01.074 -07 000000480 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:52:01.084 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:01.084 -07 000000444 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:01.084 -07 000000444 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 06:52:01.084 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.175 mm/sec
17-03-18 06:52:01.904 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:52:01.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:52:02.034 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:02.034 -07 000000012 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:52:02.044 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:02.044 -07 000000444 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:02.074 -07 000000444 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:02.074 -07 000000444 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:52:02.074 -07 000000444 INF: Y Motor: Moved to 64.0562 after 1441 ms (table move)
17-03-18 06:52:02.074 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132067 mm (DAC = 28850)
17-03-18 06:52:02.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:02.074 -07 000000474 INF: FPGA: Recv ZSGSRD 29847
17-03-18 06:52:02.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:52:02.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:02.084 -07 000000444 INF: FPGA: Recv ZSGSRD 29848
17-03-18 06:52:02.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:02.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:02.094 -07 000000611 INF: FPGA: Recv ZSGSRD 29841
17-03-18 06:52:02.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:02.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:02.104 -07 000000474 INF: FPGA: Recv ZSGSRD 29846
17-03-18 06:52:02.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:02.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:02.114 -07 000000444 INF: FPGA: Recv ZSGSRD 29849
17-03-18 06:52:02.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:02.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:02.124 -07 000000611 INF: FPGA: Recv ZSGSRD 29847
17-03-18 06:52:02.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:02.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:02.134 -07 000000444 INF: FPGA: Recv ZSGSRD 29846
17-03-18 06:52:02.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:02.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:02.144 -07 000000611 INF: FPGA: Recv ZSGSRD 29849
17-03-18 06:52:02.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:02.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:02.154 -07 000000444 INF: FPGA: Recv ZSGSRD 29857
17-03-18 06:52:02.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:02.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:02.934 -07 000000462 INF: FPGA: Recv ZSGSRD 29847
17-03-18 06:52:02.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 760 ms to get response, and 770 ms overall
17-03-18 06:52:02.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:02.934 -07 000000501 INF: FPGA: Recv ZPIEZORD 25409
17-03-18 06:52:02.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:02.944 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.7 V.
17-03-18 06:52:02.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29848 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29847 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29841 (-131.2 uncal um), Max = 29857 (-131.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:52:02.944 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29848, posNoise = 9, negNoise = 7
17-03-18 06:52:02.944 -07 000000610 INF: Z Motor: After move to -0.132067, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:02.944 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 868 ms (allowed 150 ms), total time = 2311 ms
17-03-18 06:52:02.944 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 868 ms, longer than max expected time of 150 ms
17-03-18 06:52:02.944 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2314 ms
17-03-18 06:52:02.944 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:02.944 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.132073236018416. ----------
17-03-18 06:52:02.944 -07 000000610 INF: Cycle	154	Tile	6	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:02.944 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28674, sync = True, waitForSettling = True)
17-03-18 06:52:02.944 -07 000000610 INF: Z Motor: Moving to -0.131261 mm, started at -0.132073 mm, distance = 0.81 um
17-03-18 06:52:02.944 -07 000000610 INF: FPGA: Xmit ZDACW 28674\n [Z Motor]
17-03-18 06:52:02.954 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:52:02.954 -07 000000610 INF: FPGA: 'ZDACW 28674' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:52:02.954 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:02.954 -07 000000590 INF: FPGA: Recv ZDACR 28674
17-03-18 06:52:02.964 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:02.964 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:03.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:03.114 -07 000000462 INF: FPGA: Recv ZSGSRD 29719
17-03-18 06:52:03.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:03.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:03.124 -07 000000590 INF: FPGA: Recv ZSGSRD 29723
17-03-18 06:52:03.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:03.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:03.134 -07 000000462 INF: FPGA: Recv ZSGSRD 29722
17-03-18 06:52:03.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:03.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:03.144 -07 000000590 INF: FPGA: Recv ZSGSRD 29722
17-03-18 06:52:03.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:03.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:03.154 -07 000000462 INF: FPGA: Recv ZSGSRD 29724
17-03-18 06:52:03.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:03.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:03.164 -07 000000501 INF: FPGA: Recv ZSGSRD 29723
17-03-18 06:52:03.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:03.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:03.174 -07 000000462 INF: FPGA: Recv ZSGSRD 29720
17-03-18 06:52:03.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:03.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:03.184 -07 000000462 INF: FPGA: Recv ZSGSRD 29727
17-03-18 06:52:03.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:03.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:03.194 -07 000000462 INF: FPGA: Recv ZSGSRD 29721
17-03-18 06:52:03.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:03.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:03.204 -07 000000590 INF: FPGA: Recv ZSGSRD 29722
17-03-18 06:52:03.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:03.214 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:03.214 -07 000000462 INF: FPGA: Recv ZPIEZORD 25225
17-03-18 06:52:03.224 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:03.224 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.375 V. Piezo Error = -9.9 V.
17-03-18 06:52:03.224 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29722 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29722 (-130.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29719 (-130.5 uncal um), Max = 29727 (-130.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:52:03.224 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29722, posNoise = 5, negNoise = 3
17-03-18 06:52:03.224 -07 000000610 INF: Z Motor: After move to -0.131261, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:03.224 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:52:03.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:03.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:03.224 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:03.224 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:03.224 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:03.224 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:03.224 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:03.224 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:03.234 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:52:03.234 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:03.234 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:52:03.234 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:03.234 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:52:03.234 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:03.234 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:52:03.234 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:03.244 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:52:03.244 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:52:03.244 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:52:03.244 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:52:03.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28850 150\n [Camera]
17-03-18 06:52:03.444 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:03.914 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:52:03.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:52:03.914 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:03.914 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:52:03.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:52:03.914 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:03.914 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:03.914 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:52:03.924 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:03.924 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:52:04.104 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28850 853
17-03-18 06:52:04.264 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1004
17-03-18 06:52:04.294 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:52:04.294 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:52:04.294 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:04.294 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:52:04.304 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:04.304 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:52:04.304 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:04.304 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:04.304 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:52:04.304 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:52:04.484 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:04.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:04.484 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:04.484 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:04.484 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) start.
17-03-18 06:52:04.484 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:04.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:04.484 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:04.484 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:04.484 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:52:04.574 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.008536,
17-03-18 06:52:04.674 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:52:04.674 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:04.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28850 150' command took 2 ms to send, 1423 ms to get response, and 1428 ms overall
17-03-18 06:52:04.674 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.131907
17-03-18 06:52:04.674 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13191 mm
17-03-18 06:52:04.674 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:04.674 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:52:04.674 -07 000000012 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 06:52:04.674 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:04.674 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 28815, sync = True, waitForSettling = False)
17-03-18 06:52:04.674 -07 000000462 INF: Z Motor: Moving to -0.131907 mm, started at -0.131264 mm, distance = -0.64 um
17-03-18 06:52:04.684 -07 000000462 INF: FPGA: Xmit ZDACW 28815\n [Z Motor]
17-03-18 06:52:04.684 -07 000000474 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:52:04.684 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:52:04.684 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:52:04.684 -07 000000012 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:04.684 -07 000000012 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:04.684 -07 000000012 INF: Y Motor: Moving 1338 steps-13
17-03-18 06:52:04.694 -07 000000462 INF: FPGA: 'ZDACW 28815' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:52:04.694 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:04.694 -07 000000447 INF: FPGA: Recv ZDACR 28815
17-03-18 06:52:04.704 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:04.704 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:04.704 -07 000000462 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 06:52:04.864 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:52:04.864 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:52:04.864 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:04.864 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 06:52:04.864 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:52:04.864 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:04.874 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:04.874 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:04.874 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:52:04.884 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:52:05.074 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 06:52:05.074 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 06:52:05.154 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:05.154 -07 000000611 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:52:05.164 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:52:05.164 -07 000000012 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:05.164 -07 000000012 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:52:05.164 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.836 mm, average velocity = 2.123 mm/sec
17-03-18 06:52:06.114 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:06.114 -07 000000480 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:52:06.124 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:06.124 -07 000000012 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:06.154 -07 000000012 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:06.154 -07 000000012 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:52:06.154 -07 000000012 INF: Y Motor: Moved to 64.8779 after 1476 ms (table move)
17-03-18 06:52:06.154 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131907 mm (DAC = 28815)
17-03-18 06:52:06.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.164 -07 000000012 INF: FPGA: Recv ZSGSRD 29821
17-03-18 06:52:06.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:52:06.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.164 -07 000000501 INF: FPGA: Recv ZSGSRD 29833
17-03-18 06:52:06.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.174 -07 000000501 INF: FPGA: Recv ZSGSRD 29814
17-03-18 06:52:06.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.184 -07 000000012 INF: FPGA: Recv ZSGSRD 29818
17-03-18 06:52:06.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.194 -07 000000012 INF: FPGA: Recv ZSGSRD 29823
17-03-18 06:52:06.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.204 -07 000000012 INF: FPGA: Recv ZSGSRD 29821
17-03-18 06:52:06.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.214 -07 000000012 INF: FPGA: Recv ZSGSRD 29827
17-03-18 06:52:06.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.224 -07 000000501 INF: FPGA: Recv ZSGSRD 29823
17-03-18 06:52:06.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.234 -07 000000474 INF: FPGA: Recv ZSGSRD 29823
17-03-18 06:52:06.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.244 -07 000000474 INF: FPGA: Recv ZSGSRD 29827
17-03-18 06:52:06.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:06.254 -07 000000474 INF: FPGA: Recv ZPIEZORD 25361
17-03-18 06:52:06.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.264 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.8 V.
17-03-18 06:52:06.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29823 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29823 (-131.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29814 (-131.1 uncal um), Max = 29833 (-131.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:52:06.264 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29823, posNoise = 10, negNoise = 9
17-03-18 06:52:06.264 -07 000000610 INF: Z Motor: After move to -0.131907, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:06.264 -07 000000610 INF: Z Motor: Settle wait time = 1479 ms, measure time = 103 ms (allowed 150 ms), total time = 1582 ms
17-03-18 06:52:06.264 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:52:06.314 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 06:52:06.314 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:06.314 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.131912630714872. ----------
17-03-18 06:52:06.314 -07 000000610 INF: Cycle	154	Tile	7	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:06.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28638, sync = True, waitForSettling = True)
17-03-18 06:52:06.314 -07 000000610 INF: Z Motor: Moving to -0.131096 mm, started at -0.131913 mm, distance = 0.82 um
17-03-18 06:52:06.314 -07 000000610 INF: FPGA: Xmit ZDACW 28638\n [Z Motor]
17-03-18 06:52:06.314 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:52:06.324 -07 000000610 INF: FPGA: 'ZDACW 28638' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:52:06.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:06.324 -07 000000447 INF: FPGA: Recv ZDACR 28638
17-03-18 06:52:06.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:06.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.484 -07 000000501 INF: FPGA: Recv ZSGSRD 29696
17-03-18 06:52:06.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:06.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.494 -07 000000501 INF: FPGA: Recv ZSGSRD 29695
17-03-18 06:52:06.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.504 -07 000000590 INF: FPGA: Recv ZSGSRD 29691
17-03-18 06:52:06.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.514 -07 000000590 INF: FPGA: Recv ZSGSRD 29694
17-03-18 06:52:06.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.524 -07 000000606 INF: FPGA: Recv ZSGSRD 29698
17-03-18 06:52:06.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.534 -07 000000012 INF: FPGA: Recv ZSGSRD 29696
17-03-18 06:52:06.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.544 -07 000000012 INF: FPGA: Recv ZSGSRD 29691
17-03-18 06:52:06.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.554 -07 000000012 INF: FPGA: Recv ZSGSRD 29699
17-03-18 06:52:06.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.564 -07 000000012 INF: FPGA: Recv ZSGSRD 29697
17-03-18 06:52:06.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:06.574 -07 000000012 INF: FPGA: Recv ZSGSRD 29697
17-03-18 06:52:06.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:06.584 -07 000000430 INF: FPGA: Recv ZPIEZORD 25150
17-03-18 06:52:06.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 5 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:06.594 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -10.0 V.
17-03-18 06:52:06.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29695 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29696 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29691 (-130.3 uncal um), Max = 29699 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:52:06.594 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29695, posNoise = 4, negNoise = 4
17-03-18 06:52:06.594 -07 000000610 INF: Z Motor: After move to -0.131096, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:06.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:52:06.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:06.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:06.594 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:06.594 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:06.594 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:06.594 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:06.594 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:06.594 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:06.594 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:52:06.594 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:06.594 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:52:06.594 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:06.604 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:52:06.604 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:06.604 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:52:06.604 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:06.614 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:52:06.614 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:52:06.614 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:52:06.614 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:52:06.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28815 150\n [Camera]
17-03-18 06:52:06.814 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:06.904 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:52:06.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:52:07.284 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:52:07.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:52:07.284 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:07.284 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:07.284 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:52:07.284 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:52:07.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:52:07.294 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:07.294 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:07.294 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:52:07.474 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28815 853
17-03-18 06:52:07.634 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:07.664 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:52:07.664 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:52:07.664 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:07.664 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:52:07.664 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:52:07.664 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:07.674 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:52:07.674 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:52:07.674 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:52:07.674 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:52:07.854 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:07.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:07.854 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:07.854 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:07.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:07.854 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:07.864 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:07.864 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 06:52:07.864 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:07.864 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:52:08.044 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:52:08.044 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:08.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28815 150' command took 2 ms to send, 1416 ms to get response, and 1427 ms overall
17-03-18 06:52:08.044 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.131795
17-03-18 06:52:08.044 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13179 mm
17-03-18 06:52:08.044 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:08.054 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:52:08.054 -07 000000474 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-18 06:52:08.054 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:08.054 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 28791, sync = True, waitForSettling = False)
17-03-18 06:52:08.054 -07 000000444 INF: Z Motor: Moving to -0.131797 mm, started at -0.131090 mm, distance = -0.71 um
17-03-18 06:52:08.054 -07 000000590 INF: FPGA: Recv YRDPOS 132870
17-03-18 06:52:08.064 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:52:08.064 -07 000000444 INF: FPGA: Xmit ZDACW 28791\n [Z Motor]
17-03-18 06:52:08.064 -07 000000474 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:08.064 -07 000000474 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:08.064 -07 000000474 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:52:08.064 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:52:08.074 -07 000000444 INF: FPGA: 'ZDACW 28791' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:52:08.074 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:08.074 -07 000000606 INF: FPGA: Recv ZDACR 28791
17-03-18 06:52:08.084 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:08.084 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:08.084 -07 000000444 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 06:52:08.244 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:52:08.244 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:52:08.244 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:08.254 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:52:08.254 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:52:08.254 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:08.254 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:52:08.254 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:52:08.254 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:52:08.264 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:52:08.454 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:52:08.454 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:52:08.514 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:08.514 -07 000000611 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:52:08.524 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:52:08.524 -07 000000474 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:08.524 -07 000000474 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:52:08.524 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 06:52:09.474 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:09.474 -07 000000480 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:52:09.484 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:09.484 -07 000000474 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:09.514 -07 000000474 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:09.514 -07 000000474 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:52:09.514 -07 000000474 INF: Y Motor: Moved to 65.7134 after 1467 ms (table move)
17-03-18 06:52:09.524 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131797 mm (DAC = 28791)
17-03-18 06:52:09.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.524 -07 000000474 INF: FPGA: Recv ZSGSRD 29804
17-03-18 06:52:09.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:52:09.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.534 -07 000000430 INF: FPGA: Recv ZSGSRD 29799
17-03-18 06:52:09.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.544 -07 000000474 INF: FPGA: Recv ZSGSRD 29798
17-03-18 06:52:09.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:09.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.554 -07 000000474 INF: FPGA: Recv ZSGSRD 29802
17-03-18 06:52:09.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.564 -07 000000590 INF: FPGA: Recv ZSGSRD 29806
17-03-18 06:52:09.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.574 -07 000000590 INF: FPGA: Recv ZSGSRD 29806
17-03-18 06:52:09.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.584 -07 000000590 INF: FPGA: Recv ZSGSRD 29813
17-03-18 06:52:09.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.594 -07 000000590 INF: FPGA: Recv ZSGSRD 29807
17-03-18 06:52:09.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.604 -07 000000590 INF: FPGA: Recv ZSGSRD 29808
17-03-18 06:52:09.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.624 -07 000000611 INF: FPGA: Recv ZSGSRD 29805
17-03-18 06:52:09.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:52:09.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:09.634 -07 000000606 INF: FPGA: Recv ZPIEZORD 25343
17-03-18 06:52:09.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.644 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.8 V.
17-03-18 06:52:09.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29805 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29806 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29798 (-131.0 uncal um), Max = 29813 (-131.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:52:09.644 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29805, posNoise = 8, negNoise = 7
17-03-18 06:52:09.644 -07 000000610 INF: Z Motor: After move to -0.131797, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:09.644 -07 000000610 INF: Z Motor: Settle wait time = 1469 ms, measure time = 118 ms (allowed 150 ms), total time = 1587 ms
17-03-18 06:52:09.644 -07 000000610 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-18 06:52:09.684 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 06:52:09.684 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:09.684 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.13179699489632. ----------
17-03-18 06:52:09.684 -07 000000610 INF: Cycle	154	Tile	8	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:09.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28614, sync = True, waitForSettling = True)
17-03-18 06:52:09.684 -07 000000610 INF: Z Motor: Moving to -0.130986 mm, started at -0.131797 mm, distance = 0.81 um
17-03-18 06:52:09.684 -07 000000610 INF: FPGA: Xmit ZDACW 28614\n [Z Motor]
17-03-18 06:52:09.684 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:52:09.694 -07 000000610 INF: FPGA: 'ZDACW 28614' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:52:09.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:09.694 -07 000000012 INF: FPGA: Recv ZDACR 28614
17-03-18 06:52:09.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:09.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.854 -07 000000430 INF: FPGA: Recv ZSGSRD 29680
17-03-18 06:52:09.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:09.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.864 -07 000000590 INF: FPGA: Recv ZSGSRD 29676
17-03-18 06:52:09.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.874 -07 000000462 INF: FPGA: Recv ZSGSRD 29675
17-03-18 06:52:09.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.884 -07 000000611 INF: FPGA: Recv ZSGSRD 29683
17-03-18 06:52:09.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.894 -07 000000430 INF: FPGA: Recv ZSGSRD 29681
17-03-18 06:52:09.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.904 -07 000000611 INF: FPGA: Recv ZSGSRD 29684
17-03-18 06:52:09.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.914 -07 000000012 INF: FPGA: Recv ZSGSRD 29683
17-03-18 06:52:09.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:09.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.934 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.024884,
17-03-18 06:52:09.934 -07 000000606 INF: FPGA: Recv ZSGSRD 29681
17-03-18 06:52:09.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:52:09.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.964 -07 000000590 INF: FPGA: Recv ZSGSRD 29683
17-03-18 06:52:09.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:52:09.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:09.994 -07 000000606 INF: FPGA: Recv ZSGSRD 29684
17-03-18 06:52:10.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:52:10.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:10.004 -07 000000430 INF: FPGA: Recv ZPIEZORD 25174
17-03-18 06:52:10.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:10.014 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.9 V.
17-03-18 06:52:10.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29681 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29682 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29675 (-130.2 uncal um), Max = 29684 (-130.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:52:10.014 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29681, posNoise = 3, negNoise = 6
17-03-18 06:52:10.014 -07 000000610 INF: Z Motor: After move to -0.130986, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:10.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 324 ms)
17-03-18 06:52:10.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:10.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:10.014 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:10.014 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:10.014 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:10.014 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:10.014 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:10.014 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:10.014 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:52:10.014 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:10.014 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:52:10.014 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:10.024 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:52:10.024 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:10.024 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:52:10.024 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:10.024 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:52:10.034 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:52:10.034 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:52:10.034 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:52:10.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28791 150\n [Camera]
17-03-18 06:52:10.234 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:10.704 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:52:10.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:52:10.704 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:10.704 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:52:10.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:52:10.704 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:10.704 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:10.714 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:52:10.714 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:10.714 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:52:10.894 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28791 853
17-03-18 06:52:11.044 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:11.084 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:52:11.084 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:52:11.084 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:11.084 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:52:11.084 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:52:11.084 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:11.084 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:11.094 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:11.094 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:52:11.094 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:52:11.274 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:11.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:11.274 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:11.274 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:11.274 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) start.
17-03-18 06:52:11.274 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:11.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:11.274 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:11.394 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:11.394 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:52:11.464 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-18 06:52:11.464 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:11.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28791 150' command took 2 ms to send, 1422 ms to get response, and 1427 ms overall
17-03-18 06:52:11.464 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:52:11.464 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.131000392590742. ------
17-03-18 06:52:11.464 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:52:11.464 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13730 mm
17-03-18 06:52:11.464 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:11.474 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:52:11.474 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:52:11.474 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29994, sync = True, waitForSettling = False)
17-03-18 06:52:11.474 -07 000000590 INF: Z Motor: Moving to -0.137304 mm, started at -0.131000 mm, distance = -6.30 um
17-03-18 06:52:11.474 -07 000000590 INF: FPGA: Xmit ZDACW 29994\n [Z Motor]
17-03-18 06:52:11.474 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:52:11.474 -07 000000606 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 06:52:11.474 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:52:11.484 -07 000000590 INF: FPGA: 'ZDACW 29994' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:11.484 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:52:11.494 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:11.494 -07 000000462 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:52:11.504 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 06:52:11.504 -07 000000606 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:11.504 -07 000000606 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:11.504 -07 000000606 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:52:11.504 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:11.504 -07 000000455 INF: FPGA: Recv ZDACR 29994
17-03-18 06:52:11.514 -07 000000590 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:52:11.514 -07 000000590 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 06:52:11.514 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:11.654 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:52:11.654 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:52:11.654 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:11.654 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:11.654 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:52:11.684 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:52:11.684 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:52:11.774 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:52:11.774 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:52:11.774 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:11.784 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:11.784 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-18 06:52:11.884 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:52:11.884 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-18 06:52:11.904 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:52:11.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:52:11.944 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:11.944 -07 000000480 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:52:11.954 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:52:11.954 -07 000000606 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:11.954 -07 000000606 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:52:11.954 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-18 06:52:12.904 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:12.904 -07 000000480 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:52:12.914 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:12.914 -07 000000606 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:12.944 -07 000000606 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:12.944 -07 000000606 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:52:12.944 -07 000000606 INF: Y Motor: Moved to 66.5386 after 1473 ms (table move)
17-03-18 06:52:12.944 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137304 mm (DAC = 29994)
17-03-18 06:52:12.944 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:12.954 -07 000000462 INF: FPGA: Recv ZSGSRD 30663
17-03-18 06:52:12.954 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:52:12.954 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:12.954 -07 000000455 INF: FPGA: Recv ZSGSRD 30667
17-03-18 06:52:12.964 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:52:12.964 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:12.964 -07 000000462 INF: FPGA: Recv ZSGSRD 30658
17-03-18 06:52:12.974 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:12.974 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:12.974 -07 000000608 INF: FPGA: Recv ZSGSRD 30655
17-03-18 06:52:12.984 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:12.984 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:12.984 -07 000000501 INF: FPGA: Recv ZSGSRD 30661
17-03-18 06:52:12.994 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:12.994 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:12.994 -07 000000462 INF: FPGA: Recv ZSGSRD 30658
17-03-18 06:52:13.004 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:13.004 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:13.004 -07 000000461 INF: FPGA: Recv ZSGSRD 30669
17-03-18 06:52:13.014 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:13.014 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:13.014 -07 000000462 INF: FPGA: Recv ZSGSRD 30669
17-03-18 06:52:13.024 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:13.024 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:13.024 -07 000000461 INF: FPGA: Recv ZSGSRD 30664
17-03-18 06:52:13.034 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:13.034 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:13.034 -07 000000462 INF: FPGA: Recv ZSGSRD 30670
17-03-18 06:52:13.044 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:13.044 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:13.044 -07 000000461 INF: FPGA: Recv ZPIEZORD 26447
17-03-18 06:52:13.054 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:13.054 -07 000000479 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -9.3 V.
17-03-18 06:52:13.054 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30663 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30664 (-136.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30655 (-136.5 uncal um), Max = 30670 (-136.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:52:13.054 -07 000000479 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30663, posNoise = 7, negNoise = 8
17-03-18 06:52:13.054 -07 000000479 INF: Z Motor: After move to -0.137304, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:13.054 -07 000000479 INF: Z Motor: Settle wait time = 1478 ms, measure time = 102 ms (allowed 150 ms), total time = 1580 ms
17-03-18 06:52:13.054 -07 000000479 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:52:13.104 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 06:52:13.104 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:13.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:13.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:13.104 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:13.104 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:13.104 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:52:13.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:13.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:52:13.104 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:52:13.114 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:52:13.114 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:52:13.124 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:52:13.124 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:52:13.124 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:52:13.174 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:52:13.474 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:52:13.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:52:13.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:52:13.474 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 06:52:13.514 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:52:13.514 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 06:52:13.514 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 388 ms overall
17-03-18 06:52:13.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:52:13.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:13.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:52:13.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:52:13.714 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:52:13.714 -07 000000480 INF: Autofocus start
17-03-18 06:52:13.714 -07 000000480 INF: MeasureProfile start
17-03-18 06:52:13.714 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:52:13.724 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:52:13.724 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:52:13.724 -07 000000480 INF: MeasureProfile done
17-03-18 06:52:13.724 -07 000000480 INF: X=-80  Z correction [um]=-0.3928285
17-03-18 06:52:13.724 -07 000000480 INF: Autofocus finished
17-03-18 06:52:13.924 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:52:13.924 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:52:13.924 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.137308968913951. ----------
17-03-18 06:52:13.934 -07 000000610 INF: Cycle	154	Tile	9	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:13.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28421, sync = True, waitForSettling = True)
17-03-18 06:52:13.934 -07 000000610 INF: Z Motor: Moving to -0.130103 mm, started at -0.137309 mm, distance = 7.21 um
17-03-18 06:52:13.934 -07 000000610 INF: FPGA: Xmit ZDACW 28421\n [Z Motor]
17-03-18 06:52:13.934 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:52:13.944 -07 000000610 INF: FPGA: 'ZDACW 28421' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:52:13.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:13.944 -07 000000455 INF: FPGA: Recv ZDACR 28421
17-03-18 06:52:13.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:13.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:14.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:14.104 -07 000000461 INF: FPGA: Recv ZSGSRD 29537
17-03-18 06:52:14.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:14.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:14.114 -07 000000590 INF: FPGA: Recv ZSGSRD 29549
17-03-18 06:52:14.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:14.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:14.124 -07 000000480 INF: FPGA: Recv ZSGSRD 29530
17-03-18 06:52:14.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:14.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:14.134 -07 000000444 INF: FPGA: Recv ZSGSRD 29537
17-03-18 06:52:14.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:14.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:14.144 -07 000000606 INF: FPGA: Recv ZSGSRD 29541
17-03-18 06:52:14.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:14.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:14.154 -07 000000462 INF: FPGA: Recv ZSGSRD 29547
17-03-18 06:52:14.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:14.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:14.164 -07 000000501 INF: FPGA: Recv ZSGSRD 29546
17-03-18 06:52:14.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:14.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:14.174 -07 000000608 INF: FPGA: Recv ZSGSRD 29532
17-03-18 06:52:14.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:14.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:14.184 -07 000000606 INF: FPGA: Recv ZSGSRD 29544
17-03-18 06:52:14.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:14.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:14.194 -07 000000606 INF: FPGA: Recv ZSGSRD 29538
17-03-18 06:52:14.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:52:14.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:14.204 -07 000000606 INF: FPGA: Recv ZPIEZORD 24978
17-03-18 06:52:14.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:14.214 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -10.0 V.
17-03-18 06:52:14.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29540 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29540 (-129.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29530 (-129.3 uncal um), Max = 29549 (-129.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:52:14.214 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29540, posNoise = 9, negNoise = 10
17-03-18 06:52:14.214 -07 000000610 INF: Z Motor: After move to -0.130103, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:14.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:52:14.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:14.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:14.214 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:14.214 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:14.214 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:14.214 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:14.214 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:52:14.214 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:14.214 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:14.214 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:14.214 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:52:14.214 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:14.214 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:52:14.214 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:14.224 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:52:14.224 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:14.224 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:52:14.224 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:52:14.234 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:52:14.234 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:52:14.234 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28598 150\n [Camera]
17-03-18 06:52:14.434 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:14.904 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:52:14.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:52:14.904 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:14.904 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:52:14.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:52:14.914 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:14.914 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:14.914 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:52:14.914 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:14.914 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:52:15.094 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28598 853
17-03-18 06:52:15.294 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:52:15.294 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:52:15.294 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:52:15.294 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:15.294 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:52:15.294 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:15.294 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:52:15.294 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:52:15.294 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:52:15.304 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:52:15.324 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:15.324 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 4.015368,
17-03-18 06:52:15.474 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:15.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:15.474 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:15.474 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:15.474 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:15.474 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:52:15.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:15.474 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:15.474 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:15.474 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:52:15.664 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-18 06:52:15.664 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:15.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28598 150' command took 2 ms to send, 1424 ms to get response, and 1427 ms overall
17-03-18 06:52:15.664 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.130979
17-03-18 06:52:15.664 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13098 mm
17-03-18 06:52:15.664 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:15.674 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 28612, sync = True, waitForSettling = False)
17-03-18 06:52:15.674 -07 000000479 INF: Z Motor: Moving to -0.130977 mm, started at -0.130095 mm, distance = -0.88 um
17-03-18 06:52:15.674 -07 000000479 INF: FPGA: Xmit ZDACW 28612\n [Z Motor]
17-03-18 06:52:15.674 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:52:15.674 -07 000000501 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 06:52:15.674 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:52:15.684 -07 000000479 INF: FPGA: 'ZDACW 28612' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:52:15.684 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:15.684 -07 000000590 INF: FPGA: Recv ZDACR 28612
17-03-18 06:52:15.694 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:15.694 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:15.694 -07 000000479 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-18 06:52:15.694 -07 000000479 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:52:15.704 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:52:15.704 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:15.704 -07 000000501 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:15.704 -07 000000501 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:52:15.704 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:15.854 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:52:15.854 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:52:15.854 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:15.864 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:52:15.864 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:52:15.864 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:15.864 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:52:15.864 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:52:15.864 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:52:15.874 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:52:16.074 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:52:16.074 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 06:52:16.134 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:16.134 -07 000000585 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:52:16.144 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:52:16.144 -07 000000501 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:16.144 -07 000000501 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 06:52:16.144 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.844 mm, average velocity = 2.221 mm/sec
17-03-18 06:52:16.904 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:52:16.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:52:17.094 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:17.094 -07 000000447 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:52:17.104 -07 000000501 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.104 -07 000000501 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:17.134 -07 000000501 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:17.134 -07 000000501 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:52:17.134 -07 000000501 INF: Y Motor: Moved to 67.3716 after 1460 ms (table move)
17-03-18 06:52:17.134 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130977 mm (DAC = 28612)
17-03-18 06:52:17.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.134 -07 000000447 INF: FPGA: Recv ZSGSRD 29683
17-03-18 06:52:17.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:52:17.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.144 -07 000000606 INF: FPGA: Recv ZSGSRD 29675
17-03-18 06:52:17.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.154 -07 000000585 INF: FPGA: Recv ZSGSRD 29669
17-03-18 06:52:17.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.164 -07 000000479 INF: FPGA: Recv ZSGSRD 29672
17-03-18 06:52:17.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.174 -07 000000480 INF: FPGA: Recv ZSGSRD 29680
17-03-18 06:52:17.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.184 -07 000000606 INF: FPGA: Recv ZSGSRD 29682
17-03-18 06:52:17.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.194 -07 000000480 INF: FPGA: Recv ZSGSRD 29678
17-03-18 06:52:17.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.204 -07 000000479 INF: FPGA: Recv ZSGSRD 29684
17-03-18 06:52:17.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.214 -07 000000480 INF: FPGA: Recv ZSGSRD 29678
17-03-18 06:52:17.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.224 -07 000000479 INF: FPGA: Recv ZSGSRD 29671
17-03-18 06:52:17.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:17.234 -07 000000447 INF: FPGA: Recv ZPIEZORD 25204
17-03-18 06:52:17.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.244 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.8 V.
17-03-18 06:52:17.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29677 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29678 (-130.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29669 (-130.1 uncal um), Max = 29684 (-130.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:52:17.244 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29677, posNoise = 7, negNoise = 8
17-03-18 06:52:17.244 -07 000000610 INF: Z Motor: After move to -0.130977, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:17.244 -07 000000610 INF: Z Motor: Settle wait time = 1463 ms, measure time = 105 ms (allowed 150 ms), total time = 1568 ms
17-03-18 06:52:17.244 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:52:17.294 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 06:52:17.294 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:17.294 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.130974695742175. ----------
17-03-18 06:52:17.294 -07 000000610 INF: Cycle	154	Tile	10	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:17.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28436, sync = True, waitForSettling = True)
17-03-18 06:52:17.294 -07 000000610 INF: Z Motor: Moving to -0.130172 mm, started at -0.130975 mm, distance = 0.80 um
17-03-18 06:52:17.294 -07 000000610 INF: FPGA: Xmit ZDACW 28436\n [Z Motor]
17-03-18 06:52:17.304 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:52:17.304 -07 000000610 INF: FPGA: 'ZDACW 28436' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 06:52:17.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:17.304 -07 000000447 INF: FPGA: Recv ZDACR 28436
17-03-18 06:52:17.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:52:17.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:17.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.464 -07 000000590 INF: FPGA: Recv ZSGSRD 29554
17-03-18 06:52:17.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:17.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.474 -07 000000474 INF: FPGA: Recv ZSGSRD 29557
17-03-18 06:52:17.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.484 -07 000000480 INF: FPGA: Recv ZSGSRD 29548
17-03-18 06:52:17.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.494 -07 000000474 INF: FPGA: Recv ZSGSRD 29555
17-03-18 06:52:17.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.504 -07 000000447 INF: FPGA: Recv ZSGSRD 29548
17-03-18 06:52:17.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.514 -07 000000480 INF: FPGA: Recv ZSGSRD 29558
17-03-18 06:52:17.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.524 -07 000000606 INF: FPGA: Recv ZSGSRD 29553
17-03-18 06:52:17.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.534 -07 000000585 INF: FPGA: Recv ZSGSRD 29557
17-03-18 06:52:17.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.544 -07 000000585 INF: FPGA: Recv ZSGSRD 29555
17-03-18 06:52:17.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:17.554 -07 000000585 INF: FPGA: Recv ZSGSRD 29551
17-03-18 06:52:17.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:17.564 -07 000000585 INF: FPGA: Recv ZPIEZORD 25065
17-03-18 06:52:17.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:17.574 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -9.8 V.
17-03-18 06:52:17.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29554 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29554 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29548 (-129.4 uncal um), Max = 29558 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:52:17.574 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29554, posNoise = 4, negNoise = 6
17-03-18 06:52:17.574 -07 000000610 INF: Z Motor: After move to -0.130172, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:17.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 06:52:17.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:17.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:17.574 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:17.574 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:17.584 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:17.584 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:17.584 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:52:17.584 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:17.584 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:52:17.584 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:17.594 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:52:17.594 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:52:17.594 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:17.594 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:17.594 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:52:17.594 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:17.594 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:52:17.594 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:17.604 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:52:17.604 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:52:17.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28612 150\n [Camera]
17-03-18 06:52:17.804 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:18.274 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:52:18.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:52:18.274 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:18.274 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:18.274 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:52:18.654 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 06:52:18.654 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 06:52:18.654 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:18.654 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:18.654 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:52:19.264 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:52:19.264 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28612 853
17-03-18 06:52:19.264 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:19.264 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:19.264 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:19.264 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:52:19.264 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:19.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28612 150' command took 2 ms to send, 1641 ms to get response, and 1651 ms overall
17-03-18 06:52:19.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:52:19.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:19.264 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:19.264 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:19.264 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:52:19.664 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:52:19.664 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:52:19.664 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:19.664 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:52:19.674 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:52:19.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:19.684 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:19.684 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:19.684 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 06:52:19.764 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.130511
17-03-18 06:52:19.764 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13051 mm
17-03-18 06:52:19.764 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:20.094 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 06:52:20.094 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:52:20.094 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:20.094 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:52:20.094 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:52:20.104 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:20.104 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:20.104 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 06:52:20.104 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:52:20.104 -07 000000461 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 06:52:20.104 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:20.104 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 28510, sync = True, waitForSettling = False)
17-03-18 06:52:20.104 -07 000000012 INF: Z Motor: Moving to -0.130510 mm, started at -0.130185 mm, distance = -0.33 um
17-03-18 06:52:20.104 -07 000000444 INF: FPGA: Recv YRDPOS 137977
17-03-18 06:52:20.114 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:52:20.114 -07 000000461 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:20.114 -07 000000461 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:20.114 -07 000000461 INF: Y Motor: Moving 1346 steps-24
17-03-18 06:52:20.114 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:20.124 -07 000000012 INF: FPGA: Xmit ZDACW 28510\n [Z Motor]
17-03-18 06:52:20.124 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:52:20.134 -07 000000012 INF: FPGA: 'ZDACW 28510' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:52:20.134 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:20.134 -07 000000455 INF: FPGA: Recv ZDACR 28510
17-03-18 06:52:20.144 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:20.144 -07 000000012 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 06:52:20.484 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-18 06:52:20.484 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 06:52:20.494 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 06:52:20.604 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-18 06:52:20.604 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:20.614 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:20.614 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-18 06:52:20.654 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:20.664 -07 000000012 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:52:20.664 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:52:20.664 -07 000000461 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:20.664 -07 000000461 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 06:52:20.664 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.841 mm, average velocity = 2.225 mm/sec
17-03-18 06:52:20.684 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.994908,
17-03-18 06:52:21.614 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:21.614 -07 000000608 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:52:21.624 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:21.624 -07 000000461 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:21.654 -07 000000461 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:21.654 -07 000000461 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:52:21.654 -07 000000461 INF: Y Motor: Moved to 68.2046 after 1547 ms (table move)
17-03-18 06:52:21.654 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130510 mm (DAC = 28510)
17-03-18 06:52:21.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:21.654 -07 000000462 INF: FPGA: Recv ZSGSRD 29604
17-03-18 06:52:21.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:52:21.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:21.664 -07 000000611 INF: FPGA: Recv ZSGSRD 29605
17-03-18 06:52:21.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:21.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:21.674 -07 000000461 INF: FPGA: Recv ZSGSRD 29610
17-03-18 06:52:21.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:21.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:21.684 -07 000000590 INF: FPGA: Recv ZSGSRD 29603
17-03-18 06:52:21.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:21.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:21.694 -07 000000461 INF: FPGA: Recv ZSGSRD 29608
17-03-18 06:52:21.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:21.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:21.704 -07 000000455 INF: FPGA: Recv ZSGSRD 29606
17-03-18 06:52:21.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:21.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:21.714 -07 000000611 INF: FPGA: Recv ZSGSRD 29603
17-03-18 06:52:21.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:21.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:21.724 -07 000000444 INF: FPGA: Recv ZSGSRD 29604
17-03-18 06:52:21.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:21.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:21.734 -07 000000608 INF: FPGA: Recv ZSGSRD 29606
17-03-18 06:52:21.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:21.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:22.314 -07 000000590 INF: FPGA: Recv ZSGSRD 29604
17-03-18 06:52:22.314 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:52:22.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 560 ms to get response, and 570 ms overall
17-03-18 06:52:22.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:22.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:52:22.314 -07 000000462 INF: FPGA: Recv ZPIEZORD 25190
17-03-18 06:52:22.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:52:22.324 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -9.7 V.
17-03-18 06:52:22.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29605 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29604 (-129.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29603 (-129.7 uncal um), Max = 29610 (-129.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:52:22.324 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29605, posNoise = 5, negNoise = 2
17-03-18 06:52:22.324 -07 000000610 INF: Z Motor: After move to -0.130510, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:22.324 -07 000000610 INF: Z Motor: Settle wait time = 1549 ms, measure time = 664 ms (allowed 150 ms), total time = 2213 ms
17-03-18 06:52:22.324 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 664 ms, longer than max expected time of 150 ms
17-03-18 06:52:22.324 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2559 ms
17-03-18 06:52:22.324 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:22.324 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.130512152467968. ----------
17-03-18 06:52:22.334 -07 000000610 INF: Cycle	154	Tile	11	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:22.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28333, sync = True, waitForSettling = True)
17-03-18 06:52:22.334 -07 000000610 INF: Z Motor: Moving to -0.129700 mm, started at -0.130512 mm, distance = 0.81 um
17-03-18 06:52:22.334 -07 000000610 INF: FPGA: Xmit ZDACW 28333\n [Z Motor]
17-03-18 06:52:22.334 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:52:22.344 -07 000000610 INF: FPGA: 'ZDACW 28333' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:52:22.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:22.344 -07 000000430 INF: FPGA: Recv ZDACR 28333
17-03-18 06:52:22.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:22.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:22.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:22.504 -07 000000462 INF: FPGA: Recv ZSGSRD 29475
17-03-18 06:52:22.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:22.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:22.514 -07 000000447 INF: FPGA: Recv ZSGSRD 29481
17-03-18 06:52:22.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:22.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:22.524 -07 000000608 INF: FPGA: Recv ZSGSRD 29480
17-03-18 06:52:22.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:22.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:22.534 -07 000000430 INF: FPGA: Recv ZSGSRD 29473
17-03-18 06:52:22.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:22.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:22.544 -07 000000462 INF: FPGA: Recv ZSGSRD 29477
17-03-18 06:52:22.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:22.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:22.554 -07 000000447 INF: FPGA: Recv ZSGSRD 29483
17-03-18 06:52:22.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:22.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:22.564 -07 000000455 INF: FPGA: Recv ZSGSRD 29481
17-03-18 06:52:22.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:22.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:22.574 -07 000000430 INF: FPGA: Recv ZSGSRD 29480
17-03-18 06:52:22.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:22.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:22.584 -07 000000462 INF: FPGA: Recv ZSGSRD 29484
17-03-18 06:52:22.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:22.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:22.594 -07 000000447 INF: FPGA: Recv ZSGSRD 29481
17-03-18 06:52:22.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:22.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:22.604 -07 000000461 INF: FPGA: Recv ZPIEZORD 24966
17-03-18 06:52:22.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:22.614 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.323 V. Piezo Error = -9.9 V.
17-03-18 06:52:22.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29480 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29480 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29473 (-128.9 uncal um), Max = 29484 (-129.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:52:22.614 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29480, posNoise = 4, negNoise = 7
17-03-18 06:52:22.614 -07 000000610 INF: Z Motor: After move to -0.129700, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:22.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:52:22.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:22.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:22.614 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:22.614 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:22.614 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:22.614 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:22.614 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:22.614 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:22.614 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:52:22.614 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:22.614 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:52:22.614 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:22.624 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:52:22.624 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:22.624 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:52:22.624 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:22.634 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:52:22.634 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:52:22.634 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:52:22.634 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:52:22.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28510 150\n [Camera]
17-03-18 06:52:22.834 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:23.304 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:52:23.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:52:23.304 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:23.304 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:23.304 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 06:52:23.304 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:52:23.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:52:23.304 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:23.314 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:23.314 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:52:23.494 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28510 853
17-03-18 06:52:23.644 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:23.704 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:52:23.704 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:52:23.704 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:23.704 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:23.704 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:52:23.704 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 06:52:23.704 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:52:23.704 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:23.714 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:23.714 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:52:23.864 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:23.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:23.874 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:23.874 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:23.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:23.874 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:23.874 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:23.874 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:52:23.874 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:23.874 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:52:24.064 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:52:24.064 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:24.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28510 150' command took 2 ms to send, 1421 ms to get response, and 1427 ms overall
17-03-18 06:52:24.064 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.130237
17-03-18 06:52:24.064 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13024 mm
17-03-18 06:52:24.064 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:24.064 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:52:24.064 -07 000000590 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 06:52:24.064 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:24.064 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 28450, sync = True, waitForSettling = False)
17-03-18 06:52:24.064 -07 000000461 INF: Z Motor: Moving to -0.130236 mm, started at -0.129709 mm, distance = -0.53 um
17-03-18 06:52:24.064 -07 000000444 INF: FPGA: Recv YRDPOS 139683
17-03-18 06:52:24.074 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:52:24.074 -07 000000590 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:24.074 -07 000000590 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:24.074 -07 000000590 INF: Y Motor: Moving 1341 steps-16
17-03-18 06:52:24.074 -07 000000461 INF: FPGA: Xmit ZDACW 28450\n [Z Motor]
17-03-18 06:52:24.074 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:52:24.084 -07 000000461 INF: FPGA: 'ZDACW 28450' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:52:24.084 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:24.084 -07 000000444 INF: FPGA: Recv ZDACR 28450
17-03-18 06:52:24.094 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:24.094 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:24.094 -07 000000461 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 06:52:24.274 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:52:24.274 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:52:24.274 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:24.274 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:52:24.274 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:52:24.274 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:24.274 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:24.274 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:52:24.284 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:24.284 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:52:24.464 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:52:24.464 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:52:24.524 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:24.524 -07 000000480 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:52:24.534 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:24.534 -07 000000590 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:24.534 -07 000000590 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 06:52:24.534 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 06:52:25.484 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:25.484 -07 000000461 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:52:25.494 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:25.494 -07 000000590 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:25.524 -07 000000590 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:25.524 -07 000000590 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:52:25.524 -07 000000590 INF: Y Motor: Moved to 69.0264 after 1457 ms (table move)
17-03-18 06:52:25.524 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130236 mm (DAC = 28450)
17-03-18 06:52:25.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.524 -07 000000590 INF: FPGA: Recv ZSGSRD 29565
17-03-18 06:52:25.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:52:25.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.534 -07 000000606 INF: FPGA: Recv ZSGSRD 29557
17-03-18 06:52:25.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.544 -07 000000606 INF: FPGA: Recv ZSGSRD 29561
17-03-18 06:52:25.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.554 -07 000000606 INF: FPGA: Recv ZSGSRD 29555
17-03-18 06:52:25.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.564 -07 000000461 INF: FPGA: Recv ZSGSRD 29557
17-03-18 06:52:25.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.574 -07 000000461 INF: FPGA: Recv ZSGSRD 29566
17-03-18 06:52:25.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.584 -07 000000447 INF: FPGA: Recv ZSGSRD 29566
17-03-18 06:52:25.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.594 -07 000000447 INF: FPGA: Recv ZSGSRD 29569
17-03-18 06:52:25.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.604 -07 000000447 INF: FPGA: Recv ZSGSRD 29557
17-03-18 06:52:25.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.614 -07 000000608 INF: FPGA: Recv ZSGSRD 29560
17-03-18 06:52:25.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:25.624 -07 000000608 INF: FPGA: Recv ZPIEZORD 25111
17-03-18 06:52:25.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.634 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.8 V.
17-03-18 06:52:25.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29561 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29560 (-129.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29555 (-129.4 uncal um), Max = 29569 (-129.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:52:25.634 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29561, posNoise = 8, negNoise = 6
17-03-18 06:52:25.634 -07 000000610 INF: Z Motor: After move to -0.130236, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:25.634 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 106 ms (allowed 150 ms), total time = 1564 ms
17-03-18 06:52:25.634 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:52:25.684 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 06:52:25.684 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:25.684 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.130229487133731. ----------
17-03-18 06:52:25.684 -07 000000610 INF: Cycle	154	Tile	12	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:25.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28274, sync = True, waitForSettling = True)
17-03-18 06:52:25.684 -07 000000610 INF: Z Motor: Moving to -0.129430 mm, started at -0.130229 mm, distance = 0.80 um
17-03-18 06:52:25.684 -07 000000610 INF: FPGA: Xmit ZDACW 28274\n [Z Motor]
17-03-18 06:52:25.684 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:52:25.694 -07 000000610 INF: FPGA: 'ZDACW 28274' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:52:25.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:25.694 -07 000000461 INF: FPGA: Recv ZDACR 28274
17-03-18 06:52:25.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:25.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.854 -07 000000455 INF: FPGA: Recv ZSGSRD 29435
17-03-18 06:52:25.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:25.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.864 -07 000000608 INF: FPGA: Recv ZSGSRD 29439
17-03-18 06:52:25.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.874 -07 000000608 INF: FPGA: Recv ZSGSRD 29435
17-03-18 06:52:25.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.884 -07 000000447 INF: FPGA: Recv ZSGSRD 29434
17-03-18 06:52:25.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.894 -07 000000608 INF: FPGA: Recv ZSGSRD 29440
17-03-18 06:52:25.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.904 -07 000000461 INF: FPGA: Recv ZSGSRD 29435
17-03-18 06:52:25.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.914 -07 000000461 INF: FPGA: Recv ZSGSRD 29437
17-03-18 06:52:25.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.924 -07 000000461 INF: FPGA: Recv ZSGSRD 29433
17-03-18 06:52:25.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.934 -07 000000461 INF: FPGA: Recv ZSGSRD 29434
17-03-18 06:52:25.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:25.944 -07 000000455 INF: FPGA: Recv ZSGSRD 29436
17-03-18 06:52:25.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:25.954 -07 000000480 INF: FPGA: Recv ZPIEZORD 24921
17-03-18 06:52:25.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:25.964 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.9 V.
17-03-18 06:52:25.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29436 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29435 (-128.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29433 (-128.6 uncal um), Max = 29440 (-128.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:52:25.964 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29436, posNoise = 4, negNoise = 3
17-03-18 06:52:25.964 -07 000000610 INF: Z Motor: After move to -0.129430, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:25.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:52:25.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:25.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:25.964 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:25.964 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:25.964 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:25.964 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:25.964 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:25.964 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:25.964 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:52:25.964 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:25.964 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:52:25.964 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:25.974 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:52:25.974 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:25.974 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:52:25.974 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:25.984 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:52:25.984 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:52:25.984 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:52:25.984 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:52:25.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28450 150\n [Camera]
17-03-18 06:52:26.044 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.99219,
17-03-18 06:52:26.184 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:26.654 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:52:26.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:52:26.654 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:26.654 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:52:26.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:52:26.654 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:26.784 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:26.784 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:52:26.784 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:26.784 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:52:26.844 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28450 853
17-03-18 06:52:26.904 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:52:26.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:52:26.994 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:27.154 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 06:52:27.154 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 06:52:27.154 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:27.154 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:52:27.154 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:52:27.154 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:27.164 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:27.164 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:27.164 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-18 06:52:27.164 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-18 06:52:27.224 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:27.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:27.224 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:27.224 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:27.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:27.224 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:27.224 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:27.224 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:52:27.234 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:27.234 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:52:27.414 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:52:27.414 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:27.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28450 150' command took 2 ms to send, 1424 ms to get response, and 1428 ms overall
17-03-18 06:52:27.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:52:27.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129426460616011. ------
17-03-18 06:52:27.424 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13585 mm
17-03-18 06:52:27.424 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:27.424 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:52:27.424 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:52:27.424 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29676, sync = True, waitForSettling = False)
17-03-18 06:52:27.424 -07 000000455 INF: Z Motor: Moving to -0.135848 mm, started at -0.129426 mm, distance = -6.42 um
17-03-18 06:52:27.424 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:52:27.424 -07 000000430 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 06:52:27.434 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:27.434 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:27.434 -07 000000608 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:52:27.444 -07 000000455 INF: FPGA: Xmit ZDACW 29676\n [Z Motor]
17-03-18 06:52:27.444 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:52:27.444 -07 000000430 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:27.444 -07 000000430 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:27.444 -07 000000430 INF: Y Motor: Moving 1354 steps-33
17-03-18 06:52:27.444 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:52:27.454 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:52:27.454 -07 000000455 INF: FPGA: 'ZDACW 29676' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:52:27.464 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:27.474 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:27.474 -07 000000608 INF: FPGA: Recv ZDACR 29676
17-03-18 06:52:27.484 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:52:27.484 -07 000000455 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 06:52:27.604 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:52:27.604 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:52:27.604 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:27.614 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:52:27.614 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:52:27.614 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:27.614 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:27.614 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:52:27.614 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:27.624 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:52:27.654 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:52:27.654 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:52:27.834 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:52:27.834 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 06:52:27.894 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:27.894 -07 000000479 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:52:27.904 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:52:27.904 -07 000000430 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:27.904 -07 000000430 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:52:27.904 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-18 06:52:28.854 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:28.854 -07 000000608 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:52:28.864 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:28.864 -07 000000430 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:28.894 -07 000000430 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:28.894 -07 000000430 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:52:28.894 -07 000000430 INF: Y Motor: Moved to 69.8628 after 1466 ms (table move)
17-03-18 06:52:28.894 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135848 mm (DAC = 29676)
17-03-18 06:52:28.894 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:28.894 -07 000000480 INF: FPGA: Recv ZSGSRD 30446
17-03-18 06:52:28.904 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:52:28.904 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:28.904 -07 000000430 INF: FPGA: Recv ZSGSRD 30431
17-03-18 06:52:28.914 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:28.914 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:28.914 -07 000000480 INF: FPGA: Recv ZSGSRD 30437
17-03-18 06:52:28.924 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:28.924 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:28.924 -07 000000479 INF: FPGA: Recv ZSGSRD 30429
17-03-18 06:52:28.934 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:28.934 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:28.934 -07 000000455 INF: FPGA: Recv ZSGSRD 30436
17-03-18 06:52:28.944 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:28.944 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:28.944 -07 000000608 INF: FPGA: Recv ZSGSRD 30438
17-03-18 06:52:28.954 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:28.954 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:28.954 -07 000000430 INF: FPGA: Recv ZSGSRD 30433
17-03-18 06:52:28.964 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:28.964 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:28.964 -07 000000480 INF: FPGA: Recv ZSGSRD 30437
17-03-18 06:52:28.974 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:28.974 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:28.974 -07 000000455 INF: FPGA: Recv ZSGSRD 30437
17-03-18 06:52:28.984 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:28.984 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:28.984 -07 000000430 INF: FPGA: Recv ZSGSRD 30445
17-03-18 06:52:28.994 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:52:28.994 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:28.994 -07 000000590 INF: FPGA: Recv ZPIEZORD 26241
17-03-18 06:52:29.004 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:29.004 -07 000000461 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.528 V. Piezo Error = -9.2 V.
17-03-18 06:52:29.004 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.8 um, Read 10 ADC samples: Avg = 30437 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30437 (-135.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30429 (-135.0 uncal um), Max = 30446 (-135.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:52:29.004 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30437, posNoise = 9, negNoise = 8
17-03-18 06:52:29.004 -07 000000461 INF: Z Motor: After move to -0.135848, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:29.004 -07 000000461 INF: Z Motor: Settle wait time = 1469 ms, measure time = 105 ms (allowed 150 ms), total time = 1574 ms
17-03-18 06:52:29.004 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:52:29.054 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 06:52:29.054 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:29.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:29.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:29.054 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:29.054 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:29.054 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:52:29.054 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:29.054 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:52:29.054 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:52:29.054 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:52:29.054 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:52:29.074 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:52:29.074 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:52:29.074 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:52:29.114 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:52:29.414 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:52:29.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:52:29.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:52:29.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2587044672, 0x0, 559484976) start.
17-03-18 06:52:29.454 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:52:29.454 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-18 06:52:29.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 06:52:29.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2587044672, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:52:29.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:29.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:52:29.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:52:29.654 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:52:29.654 -07 000000455 INF: Autofocus start
17-03-18 06:52:29.654 -07 000000455 INF: MeasureProfile start
17-03-18 06:52:29.654 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:52:29.664 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:52:29.664 -07 000000479 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:52:29.664 -07 000000455 INF: MeasureProfile done
17-03-18 06:52:29.664 -07 000000455 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:52:29.664 -07 000000455 INF: Autofocus finished
17-03-18 06:52:29.864 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:52:29.864 -07 000000479 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:52:29.864 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.135857096969913. ----------
17-03-18 06:52:29.874 -07 000000610 INF: Cycle	154	Tile	13	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:29.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28200, sync = True, waitForSettling = True)
17-03-18 06:52:29.874 -07 000000610 INF: Z Motor: Moving to -0.129091 mm, started at -0.135857 mm, distance = 6.77 um
17-03-18 06:52:29.874 -07 000000610 INF: FPGA: Xmit ZDACW 28200\n [Z Motor]
17-03-18 06:52:29.874 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:52:29.884 -07 000000610 INF: FPGA: 'ZDACW 28200' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:52:29.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:29.884 -07 000000455 INF: FPGA: Recv ZDACR 28200
17-03-18 06:52:29.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:29.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:30.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:30.044 -07 000000590 INF: FPGA: Recv ZSGSRD 29387
17-03-18 06:52:30.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:30.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:30.054 -07 000000461 INF: FPGA: Recv ZSGSRD 29386
17-03-18 06:52:30.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:52:30.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:30.064 -07 000000480 INF: FPGA: Recv ZSGSRD 29389
17-03-18 06:52:30.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:30.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:30.074 -07 000000455 INF: FPGA: Recv ZSGSRD 29390
17-03-18 06:52:30.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:30.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:30.084 -07 000000480 INF: FPGA: Recv ZSGSRD 29384
17-03-18 06:52:30.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:30.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:30.094 -07 000000608 INF: FPGA: Recv ZSGSRD 29384
17-03-18 06:52:30.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:30.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:30.104 -07 000000430 INF: FPGA: Recv ZSGSRD 29381
17-03-18 06:52:30.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:30.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:30.114 -07 000000479 INF: FPGA: Recv ZSGSRD 29388
17-03-18 06:52:30.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:30.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:30.124 -07 000000430 INF: FPGA: Recv ZSGSRD 29378
17-03-18 06:52:30.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:30.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:30.134 -07 000000480 INF: FPGA: Recv ZSGSRD 29381
17-03-18 06:52:30.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:30.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:30.144 -07 000000590 INF: FPGA: Recv ZPIEZORD 24827
17-03-18 06:52:30.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:30.154 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -10.0 V.
17-03-18 06:52:30.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29385 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29385 (-128.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29378 (-128.3 uncal um), Max = 29390 (-128.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:52:30.154 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29385, posNoise = 5, negNoise = 7
17-03-18 06:52:30.154 -07 000000610 INF: Z Motor: After move to -0.129091, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:30.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:52:30.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:30.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:30.154 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:30.154 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:30.154 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:30.154 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:30.154 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:30.154 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:30.154 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:52:30.154 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:30.154 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:52:30.154 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:30.164 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:52:30.164 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:30.164 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:52:30.164 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:30.174 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:52:30.174 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:52:30.174 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:52:30.174 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:52:30.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28377 150\n [Camera]
17-03-18 06:52:30.374 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:30.844 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:52:30.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:52:30.844 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:30.854 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:52:30.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:52:30.854 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:30.854 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:30.854 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:52:30.854 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:30.854 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:52:31.044 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28377 855
17-03-18 06:52:31.194 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:31.224 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:52:31.224 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 06:52:31.224 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:31.224 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:52:31.224 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:52:31.224 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:31.234 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:31.234 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:52:31.234 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:31.244 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:52:31.404 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.996267,
17-03-18 06:52:31.414 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:31.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:31.414 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:31.414 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:31.414 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) start.
17-03-18 06:52:31.414 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:31.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:31.424 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:31.424 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:31.424 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:52:31.604 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1422
17-03-18 06:52:31.604 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:31.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28377 150' command took 2 ms to send, 1419 ms to get response, and 1429 ms overall
17-03-18 06:52:31.614 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.129524
17-03-18 06:52:31.614 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.12952 mm
17-03-18 06:52:31.614 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:31.614 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:52:31.614 -07 000000608 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 06:52:31.614 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:31.614 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 28294, sync = True, waitForSettling = False)
17-03-18 06:52:31.614 -07 000000585 INF: Z Motor: Moving to -0.129522 mm, started at -0.129099 mm, distance = -0.42 um
17-03-18 06:52:31.614 -07 000000455 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:52:31.624 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:52:31.624 -07 000000585 INF: FPGA: Xmit ZDACW 28294\n [Z Motor]
17-03-18 06:52:31.624 -07 000000608 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:31.624 -07 000000608 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:31.624 -07 000000608 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:52:31.624 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:52:31.634 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:31.634 -07 000000585 INF: FPGA: 'ZDACW 28294' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:52:31.644 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:31.644 -07 000000461 INF: FPGA: Recv ZDACR 28294
17-03-18 06:52:31.654 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:52:31.654 -07 000000585 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:52:31.804 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:52:31.804 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:52:31.804 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:31.804 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:52:31.804 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:52:31.804 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:31.804 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:31.804 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:52:31.804 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:52:31.814 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:52:31.934 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:52:31.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:52:32.004 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:52:32.004 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:52:32.064 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:32.064 -07 000000430 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:52:32.074 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:52:32.074 -07 000000608 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:32.074 -07 000000608 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:52:32.074 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec
17-03-18 06:52:33.024 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:33.024 -07 000000590 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:52:33.034 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:33.034 -07 000000608 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:33.064 -07 000000608 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:33.064 -07 000000608 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:52:33.064 -07 000000608 INF: Y Motor: Moved to 70.6875 after 1449 ms (table move)
17-03-18 06:52:33.064 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129522 mm (DAC = 28294)
17-03-18 06:52:33.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.064 -07 000000590 INF: FPGA: Recv ZSGSRD 29453
17-03-18 06:52:33.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:52:33.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.074 -07 000000608 INF: FPGA: Recv ZSGSRD 29450
17-03-18 06:52:33.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.084 -07 000000430 INF: FPGA: Recv ZSGSRD 29450
17-03-18 06:52:33.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.094 -07 000000590 INF: FPGA: Recv ZSGSRD 29450
17-03-18 06:52:33.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.104 -07 000000430 INF: FPGA: Recv ZSGSRD 29454
17-03-18 06:52:33.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.114 -07 000000474 INF: FPGA: Recv ZSGSRD 29452
17-03-18 06:52:33.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.124 -07 000000585 INF: FPGA: Recv ZSGSRD 29454
17-03-18 06:52:33.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.134 -07 000000501 INF: FPGA: Recv ZSGSRD 29453
17-03-18 06:52:33.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.144 -07 000000479 INF: FPGA: Recv ZSGSRD 29453
17-03-18 06:52:33.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.154 -07 000000430 INF: FPGA: Recv ZSGSRD 29447
17-03-18 06:52:33.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:33.164 -07 000000479 INF: FPGA: Recv ZPIEZORD 24995
17-03-18 06:52:33.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.174 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.8 V.
17-03-18 06:52:33.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29452 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29452 (-128.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29447 (-128.7 uncal um), Max = 29454 (-128.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:52:33.174 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29452, posNoise = 2, negNoise = 5
17-03-18 06:52:33.174 -07 000000610 INF: Z Motor: After move to -0.129522, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:33.174 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 105 ms (allowed 150 ms), total time = 1555 ms
17-03-18 06:52:33.174 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:52:33.224 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 06:52:33.224 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:33.224 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.129529248010279. ----------
17-03-18 06:52:33.224 -07 000000610 INF: Cycle	154	Tile	14	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:33.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28118, sync = True, waitForSettling = True)
17-03-18 06:52:33.224 -07 000000610 INF: Z Motor: Moving to -0.128716 mm, started at -0.129529 mm, distance = 0.81 um
17-03-18 06:52:33.224 -07 000000610 INF: FPGA: Xmit ZDACW 28118\n [Z Motor]
17-03-18 06:52:33.224 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:52:33.234 -07 000000610 INF: FPGA: 'ZDACW 28118' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:52:33.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:33.234 -07 000000590 INF: FPGA: Recv ZDACR 28118
17-03-18 06:52:33.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:33.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.394 -07 000000012 INF: FPGA: Recv ZSGSRD 29325
17-03-18 06:52:33.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:33.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.404 -07 000000012 INF: FPGA: Recv ZSGSRD 29325
17-03-18 06:52:33.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.414 -07 000000590 INF: FPGA: Recv ZSGSRD 29322
17-03-18 06:52:33.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.424 -07 000000430 INF: FPGA: Recv ZSGSRD 29326
17-03-18 06:52:33.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.434 -07 000000590 INF: FPGA: Recv ZSGSRD 29323
17-03-18 06:52:33.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.444 -07 000000461 INF: FPGA: Recv ZSGSRD 29327
17-03-18 06:52:33.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.454 -07 000000479 INF: FPGA: Recv ZSGSRD 29327
17-03-18 06:52:33.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.464 -07 000000461 INF: FPGA: Recv ZSGSRD 29324
17-03-18 06:52:33.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.474 -07 000000590 INF: FPGA: Recv ZSGSRD 29324
17-03-18 06:52:33.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:33.484 -07 000000012 INF: FPGA: Recv ZSGSRD 29322
17-03-18 06:52:33.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:33.494 -07 000000461 INF: FPGA: Recv ZPIEZORD 24822
17-03-18 06:52:33.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:33.504 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -9.9 V.
17-03-18 06:52:33.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29324 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29324 (-127.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29322 (-127.9 uncal um), Max = 29327 (-128.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:52:33.504 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29324, posNoise = 3, negNoise = 2
17-03-18 06:52:33.504 -07 000000610 INF: Z Motor: After move to -0.128716, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:33.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:52:33.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:33.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:33.504 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:33.504 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:33.504 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:33.504 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:33.504 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:33.504 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:33.504 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:52:33.504 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:33.504 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:52:33.504 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:33.514 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:52:33.514 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:33.514 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:52:33.514 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:33.514 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:52:33.514 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:52:33.524 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:52:33.524 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:52:33.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28294 150\n [Camera]
17-03-18 06:52:33.724 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:34.194 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:52:34.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:52:34.194 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:34.194 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:52:34.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:52:34.194 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:34.194 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:34.194 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 06:52:34.194 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:34.194 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:52:34.384 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28294 853
17-03-18 06:52:34.534 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:34.574 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:52:34.574 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:52:34.574 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:34.574 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:52:34.574 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:52:34.574 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:34.574 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:34.574 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:52:34.584 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:34.584 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:52:34.754 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:34.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:34.754 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:34.764 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:34.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:34.764 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:34.764 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:34.764 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:52:34.774 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:34.774 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2619164976, 0x0, 418435064) start.
17-03-18 06:52:34.944 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-18 06:52:34.944 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:34.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28294 150' command took 2 ms to send, 1419 ms to get response, and 1428 ms overall
17-03-18 06:52:34.954 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129354
17-03-18 06:52:34.954 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12935 mm
17-03-18 06:52:34.954 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:34.954 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:52:34.954 -07 000000606 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 06:52:34.954 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:34.954 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 28257, sync = True, waitForSettling = False)
17-03-18 06:52:34.954 -07 000000611 INF: Z Motor: Moving to -0.129352 mm, started at -0.128707 mm, distance = -0.65 um
17-03-18 06:52:34.954 -07 000000012 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:52:34.964 -07 000000606 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:52:34.964 -07 000000606 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:34.964 -07 000000611 INF: FPGA: Xmit ZDACW 28257\n [Z Motor]
17-03-18 06:52:34.964 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:52:34.964 -07 000000606 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:34.964 -07 000000606 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:52:34.974 -07 000000611 INF: FPGA: 'ZDACW 28257' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:52:34.974 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:34.984 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:34.984 -07 000000012 INF: FPGA: Recv ZDACR 28257
17-03-18 06:52:34.994 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:52:34.994 -07 000000611 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 06:52:35.144 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:52:35.144 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:52:35.144 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:35.144 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2619164976, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:52:35.144 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:52:35.144 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:35.154 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:35.154 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:52:35.154 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:35.164 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:52:35.344 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 06:52:35.344 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 06:52:35.404 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:35.404 -07 000000611 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:52:35.414 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:35.414 -07 000000606 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:35.414 -07 000000606 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:52:35.414 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-18 06:52:36.364 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:36.364 -07 000000590 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:52:36.374 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.374 -07 000000606 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:36.404 -07 000000606 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:36.404 -07 000000606 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:52:36.404 -07 000000606 INF: Y Motor: Moved to 71.5181 after 1448 ms (table move)
17-03-18 06:52:36.404 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129352 mm (DAC = 28257)
17-03-18 06:52:36.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.404 -07 000000012 INF: FPGA: Recv ZSGSRD 29423
17-03-18 06:52:36.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:52:36.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.414 -07 000000430 INF: FPGA: Recv ZSGSRD 29431
17-03-18 06:52:36.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.424 -07 000000012 INF: FPGA: Recv ZSGSRD 29422
17-03-18 06:52:36.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.434 -07 000000606 INF: FPGA: Recv ZSGSRD 29423
17-03-18 06:52:36.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.454 -07 000000611 INF: FPGA: Recv ZSGSRD 29426
17-03-18 06:52:36.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:52:36.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.464 -07 000000461 INF: FPGA: Recv ZSGSRD 29421
17-03-18 06:52:36.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.474 -07 000000444 INF: FPGA: Recv ZSGSRD 29425
17-03-18 06:52:36.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.484 -07 000000590 INF: FPGA: Recv ZSGSRD 29427
17-03-18 06:52:36.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.494 -07 000000611 INF: FPGA: Recv ZSGSRD 29426
17-03-18 06:52:36.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.504 -07 000000606 INF: FPGA: Recv ZSGSRD 29433
17-03-18 06:52:36.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:36.514 -07 000000012 INF: FPGA: Recv ZPIEZORD 24948
17-03-18 06:52:36.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.524 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -9.8 V.
17-03-18 06:52:36.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29426 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29426 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29421 (-128.6 uncal um), Max = 29433 (-128.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:52:36.524 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29426, posNoise = 7, negNoise = 5
17-03-18 06:52:36.524 -07 000000610 INF: Z Motor: After move to -0.129352, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:36.524 -07 000000610 INF: Z Motor: Settle wait time = 1449 ms, measure time = 114 ms (allowed 150 ms), total time = 1563 ms
17-03-18 06:52:36.524 -07 000000610 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 06:52:36.564 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 06:52:36.564 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:36.564 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.129362218494593. ----------
17-03-18 06:52:36.564 -07 000000610 INF: Cycle	154	Tile	15	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:36.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28081, sync = True, waitForSettling = True)
17-03-18 06:52:36.564 -07 000000610 INF: Z Motor: Moving to -0.128547 mm, started at -0.129362 mm, distance = 0.82 um
17-03-18 06:52:36.564 -07 000000610 INF: FPGA: Xmit ZDACW 28081\n [Z Motor]
17-03-18 06:52:36.564 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 06:52:36.574 -07 000000610 INF: FPGA: 'ZDACW 28081' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:52:36.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:36.574 -07 000000444 INF: FPGA: Recv ZDACR 28081
17-03-18 06:52:36.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:36.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.734 -07 000000590 INF: FPGA: Recv ZSGSRD 29305
17-03-18 06:52:36.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:36.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.744 -07 000000430 INF: FPGA: Recv ZSGSRD 29301
17-03-18 06:52:36.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.764 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.979922,
17-03-18 06:52:36.764 -07 000000606 INF: FPGA: Recv ZSGSRD 29298
17-03-18 06:52:36.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:52:36.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.774 -07 000000430 INF: FPGA: Recv ZSGSRD 29300
17-03-18 06:52:36.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:36.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.804 -07 000000444 INF: FPGA: Recv ZSGSRD 29300
17-03-18 06:52:36.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:52:36.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.814 -07 000000606 INF: FPGA: Recv ZSGSRD 29299
17-03-18 06:52:36.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.844 -07 000000479 INF: FPGA: Recv ZSGSRD 29299
17-03-18 06:52:36.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:52:36.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.854 -07 000000611 INF: FPGA: Recv ZSGSRD 29302
17-03-18 06:52:36.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.864 -07 000000430 INF: FPGA: Recv ZSGSRD 29301
17-03-18 06:52:36.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:36.874 -07 000000590 INF: FPGA: Recv ZSGSRD 29301
17-03-18 06:52:36.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:36.884 -07 000000606 INF: FPGA: Recv ZPIEZORD 24800
17-03-18 06:52:36.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:36.894 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.285 V. Piezo Error = -9.9 V.
17-03-18 06:52:36.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29301 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29300 (-127.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29298 (-127.8 uncal um), Max = 29305 (-127.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:52:36.894 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29301, posNoise = 4, negNoise = 3
17-03-18 06:52:36.894 -07 000000610 INF: Z Motor: After move to -0.128547, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:36.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-18 06:52:36.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:36.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:36.894 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:36.894 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:36.894 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:36.894 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:36.894 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:36.894 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:36.894 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:52:36.894 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:52:36.894 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:36.894 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:36.904 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:52:36.904 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:52:36.904 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:36.904 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:52:36.904 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:36.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:52:36.914 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:52:36.914 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:52:36.914 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:52:36.914 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:52:36.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28257 150\n [Camera]
17-03-18 06:52:37.124 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:37.584 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:52:37.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:52:37.584 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:37.594 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:52:37.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:52:37.594 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:37.704 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:37.704 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:52:37.704 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:37.704 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:52:37.784 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28257 853
17-03-18 06:52:37.934 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:38.074 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:52:38.074 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:52:38.074 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:38.084 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:52:38.084 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:52:38.084 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:38.084 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:38.084 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 494 ms.
17-03-18 06:52:38.084 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:38.094 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-18 06:52:38.154 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:38.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:38.154 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:38.154 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:38.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:38.164 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:38.164 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:38.164 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:52:38.164 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:38.164 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:52:38.344 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:52:38.344 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:38.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28257 150' command took 2 ms to send, 1418 ms to get response, and 1427 ms overall
17-03-18 06:52:38.344 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.128895
17-03-18 06:52:38.354 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12890 mm
17-03-18 06:52:38.354 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:38.354 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:52:38.354 -07 000000606 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 06:52:38.354 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:38.354 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 28157, sync = True, waitForSettling = False)
17-03-18 06:52:38.354 -07 000000444 INF: Z Motor: Moving to -0.128894 mm, started at -0.128559 mm, distance = -0.34 um
17-03-18 06:52:38.354 -07 000000012 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:52:38.364 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:52:38.364 -07 000000606 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:38.364 -07 000000606 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:38.364 -07 000000606 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:52:38.364 -07 000000444 INF: FPGA: Xmit ZDACW 28157\n [Z Motor]
17-03-18 06:52:38.364 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:52:38.374 -07 000000444 INF: FPGA: 'ZDACW 28157' command took 3 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:52:38.374 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:38.384 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:38.384 -07 000000012 INF: FPGA: Recv ZDACR 28157
17-03-18 06:52:38.394 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:52:38.394 -07 000000444 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 06:52:38.544 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:52:38.544 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:52:38.544 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:38.544 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:52:38.544 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:52:38.544 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:38.544 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:38.544 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:52:38.544 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:38.554 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:52:38.744 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:52:38.744 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 06:52:38.804 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:38.804 -07 000000611 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:52:38.814 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:52:38.814 -07 000000606 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:38.814 -07 000000606 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 06:52:38.814 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-18 06:52:39.764 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:39.764 -07 000000447 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:52:39.774 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:39.774 -07 000000606 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:39.804 -07 000000606 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:39.804 -07 000000606 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:52:39.804 -07 000000606 INF: Y Motor: Moved to 72.3491 after 1449 ms (table move)
17-03-18 06:52:39.804 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128894 mm (DAC = 28157)
17-03-18 06:52:39.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:39.814 -07 000000447 INF: FPGA: Recv ZSGSRD 29355
17-03-18 06:52:39.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:52:39.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:39.814 -07 000000611 INF: FPGA: Recv ZSGSRD 29354
17-03-18 06:52:39.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:39.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:39.824 -07 000000444 INF: FPGA: Recv ZSGSRD 29348
17-03-18 06:52:39.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:39.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:39.834 -07 000000606 INF: FPGA: Recv ZSGSRD 29347
17-03-18 06:52:39.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:39.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:39.844 -07 000000444 INF: FPGA: Recv ZSGSRD 29350
17-03-18 06:52:39.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:39.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:39.854 -07 000000479 INF: FPGA: Recv ZSGSRD 29358
17-03-18 06:52:39.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:39.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:39.864 -07 000000461 INF: FPGA: Recv ZSGSRD 29351
17-03-18 06:52:39.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:39.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:39.874 -07 000000479 INF: FPGA: Recv ZSGSRD 29358
17-03-18 06:52:39.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:39.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:39.884 -07 000000461 INF: FPGA: Recv ZSGSRD 29353
17-03-18 06:52:39.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:39.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:39.894 -07 000000479 INF: FPGA: Recv ZSGSRD 29346
17-03-18 06:52:39.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:39.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:39.904 -07 000000461 INF: FPGA: Recv ZPIEZORD 24912
17-03-18 06:52:39.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:39.914 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -9.7 V.
17-03-18 06:52:39.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29352 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29352 (-128.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29346 (-128.1 uncal um), Max = 29358 (-128.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:52:39.914 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29352, posNoise = 6, negNoise = 6
17-03-18 06:52:39.914 -07 000000610 INF: Z Motor: After move to -0.128894, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:39.914 -07 000000610 INF: Z Motor: Settle wait time = 1452 ms, measure time = 103 ms (allowed 150 ms), total time = 1555 ms
17-03-18 06:52:39.914 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:52:39.964 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 06:52:39.964 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:39.964 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.128886826796103. ----------
17-03-18 06:52:39.964 -07 000000610 INF: Cycle	154	Tile	16	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:39.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27980, sync = True, waitForSettling = True)
17-03-18 06:52:39.964 -07 000000610 INF: Z Motor: Moving to -0.128084 mm, started at -0.128887 mm, distance = 0.80 um
17-03-18 06:52:39.964 -07 000000610 INF: FPGA: Xmit ZDACW 27980\n [Z Motor]
17-03-18 06:52:39.964 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:52:39.974 -07 000000610 INF: FPGA: 'ZDACW 27980' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:52:39.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:39.974 -07 000000479 INF: FPGA: Recv ZDACR 27980
17-03-18 06:52:39.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:39.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:40.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:40.134 -07 000000611 INF: FPGA: Recv ZSGSRD 29223
17-03-18 06:52:40.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:40.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:40.144 -07 000000479 INF: FPGA: Recv ZSGSRD 29231
17-03-18 06:52:40.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:40.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:40.154 -07 000000479 INF: FPGA: Recv ZSGSRD 29229
17-03-18 06:52:40.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:40.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:40.164 -07 000000606 INF: FPGA: Recv ZSGSRD 29226
17-03-18 06:52:40.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:40.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:40.174 -07 000000461 INF: FPGA: Recv ZSGSRD 29232
17-03-18 06:52:40.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:40.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:40.184 -07 000000606 INF: FPGA: Recv ZSGSRD 29229
17-03-18 06:52:40.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:40.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:40.194 -07 000000447 INF: FPGA: Recv ZSGSRD 29232
17-03-18 06:52:40.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:40.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:40.204 -07 000000606 INF: FPGA: Recv ZSGSRD 29227
17-03-18 06:52:40.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:40.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:40.214 -07 000000461 INF: FPGA: Recv ZSGSRD 29230
17-03-18 06:52:40.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:40.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:40.224 -07 000000606 INF: FPGA: Recv ZSGSRD 29227
17-03-18 06:52:40.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:40.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:40.234 -07 000000461 INF: FPGA: Recv ZPIEZORD 24753
17-03-18 06:52:40.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:40.244 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -9.8 V.
17-03-18 06:52:40.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29229 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29229 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29223 (-127.3 uncal um), Max = 29232 (-127.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:52:40.244 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29229, posNoise = 3, negNoise = 6
17-03-18 06:52:40.244 -07 000000610 INF: Z Motor: After move to -0.128084, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:40.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:52:40.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:40.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:40.244 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:40.244 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:40.244 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:40.244 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:40.244 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:40.244 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:40.244 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:52:40.244 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:40.244 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:52:40.244 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:40.254 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:52:40.254 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:40.254 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:52:40.254 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:40.264 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 06:52:40.264 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:52:40.264 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:52:40.264 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:52:40.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28157 150\n [Camera]
17-03-18 06:52:40.474 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:40.944 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:52:40.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:52:40.944 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:40.944 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:52:40.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:52:40.944 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:40.944 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:40.944 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) start.
17-03-18 06:52:40.954 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:40.954 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:52:41.134 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28157 853
17-03-18 06:52:41.284 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:41.324 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:52:41.324 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 06:52:41.324 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:41.324 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:52:41.324 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:52:41.324 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:41.324 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:41.324 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:52:41.324 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:41.334 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:52:41.514 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:41.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:41.514 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:41.514 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:41.514 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:52:41.514 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:41.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:41.514 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:41.514 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:41.514 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:52:41.694 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-18 06:52:41.704 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:41.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28157 150' command took 2 ms to send, 1420 ms to get response, and 1427 ms overall
17-03-18 06:52:41.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:52:41.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128096648702666. ------
17-03-18 06:52:41.704 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:52:41.704 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13457 mm
17-03-18 06:52:41.704 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:41.704 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:52:41.704 -07 000000461 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 06:52:41.714 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:41.714 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 29396, sync = True, waitForSettling = False)
17-03-18 06:52:41.714 -07 000000611 INF: Z Motor: Moving to -0.134566 mm, started at -0.128097 mm, distance = -6.47 um
17-03-18 06:52:41.714 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:52:41.714 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:52:41.714 -07 000000585 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:52:41.724 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:52:41.724 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:41.724 -07 000000461 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:41.724 -07 000000461 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:41.724 -07 000000461 INF: Y Motor: Moving 1350 steps-28
17-03-18 06:52:41.734 -07 000000611 INF: FPGA: Xmit ZDACW 29396\n [Z Motor]
17-03-18 06:52:41.734 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:52:41.744 -07 000000611 INF: FPGA: 'ZDACW 29396' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:52:41.744 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:41.754 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:41.754 -07 000000585 INF: FPGA: Recv ZDACR 29396
17-03-18 06:52:41.764 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:52:41.764 -07 000000611 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 06:52:41.894 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:52:41.894 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:52:41.894 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:41.894 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:52:41.894 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:52:41.894 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:41.894 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:52:41.894 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:52:41.894 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:52:41.904 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:52:41.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:52:41.904 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:52:41.924 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:52:41.924 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 06:52:42.114 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 06:52:42.114 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:52:42.164 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.979922,
17-03-18 06:52:42.194 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:42.194 -07 000000444 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:52:42.204 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 06:52:42.204 -07 000000461 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:42.204 -07 000000461 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 06:52:42.204 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-18 06:52:43.154 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:43.154 -07 000000474 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:52:43.164 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:43.164 -07 000000461 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:43.194 -07 000000461 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:43.194 -07 000000461 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:52:43.194 -07 000000461 INF: Y Motor: Moved to 73.1753 after 1484 ms (table move)
17-03-18 06:52:43.194 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134566 mm (DAC = 29396)
17-03-18 06:52:43.194 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:43.204 -07 000000461 INF: FPGA: Recv ZSGSRD 30233
17-03-18 06:52:43.204 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:52:43.204 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:43.204 -07 000000480 INF: FPGA: Recv ZSGSRD 30246
17-03-18 06:52:43.214 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:52:43.214 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:43.214 -07 000000461 INF: FPGA: Recv ZSGSRD 30235
17-03-18 06:52:43.224 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:43.224 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:43.224 -07 000000480 INF: FPGA: Recv ZSGSRD 30229
17-03-18 06:52:43.234 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:43.234 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:43.234 -07 000000480 INF: FPGA: Recv ZSGSRD 30237
17-03-18 06:52:43.244 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:43.244 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:43.244 -07 000000461 INF: FPGA: Recv ZSGSRD 30227
17-03-18 06:52:43.254 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:43.254 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:43.254 -07 000000480 INF: FPGA: Recv ZSGSRD 30241
17-03-18 06:52:43.264 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:43.264 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:43.264 -07 000000461 INF: FPGA: Recv ZSGSRD 30239
17-03-18 06:52:43.274 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:43.274 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:43.274 -07 000000480 INF: FPGA: Recv ZSGSRD 30236
17-03-18 06:52:43.284 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:43.284 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:43.284 -07 000000480 INF: FPGA: Recv ZSGSRD 30245
17-03-18 06:52:43.294 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:43.294 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:43.294 -07 000000501 INF: FPGA: Recv ZPIEZORD 26035
17-03-18 06:52:43.304 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:43.304 -07 000000447 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.486 V. Piezo Error = -9.2 V.
17-03-18 06:52:43.304 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30237 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30236 (-133.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30227 (-133.7 uncal um), Max = 30246 (-133.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:52:43.304 -07 000000447 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30237, posNoise = 9, negNoise = 10
17-03-18 06:52:43.304 -07 000000447 INF: Z Motor: After move to -0.134566, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:43.304 -07 000000447 INF: Z Motor: Settle wait time = 1487 ms, measure time = 103 ms (allowed 150 ms), total time = 1590 ms
17-03-18 06:52:43.304 -07 000000447 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:52:43.354 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1642 ms
17-03-18 06:52:43.354 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:43.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:43.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:43.354 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:43.354 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:43.354 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:52:43.354 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:43.354 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:52:43.364 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:52:43.364 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:52:43.364 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:52:43.374 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 06:52:43.374 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 06:52:43.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:52:43.424 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:52:43.724 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:52:43.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:52:43.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:52:43.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-18 06:52:43.754 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:52:43.764 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 06:52:43.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:52:43.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:52:43.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:43.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:52:43.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:52:43.864 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:52:43.864 -07 000000501 INF: Autofocus start
17-03-18 06:52:43.864 -07 000000501 INF: MeasureProfile start
17-03-18 06:52:43.864 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:52:43.874 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:52:43.874 -07 000000474 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:52:43.874 -07 000000501 INF: MeasureProfile done
17-03-18 06:52:43.874 -07 000000501 INF: X=-10  Z correction [um]=-0.05208117
17-03-18 06:52:43.874 -07 000000501 INF: Autofocus finished
17-03-18 06:52:44.074 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:52:44.074 -07 000000474 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:52:44.074 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.134572254541561. ----------
17-03-18 06:52:44.074 -07 000000610 INF: Cycle	154	Tile	17	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:44.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27898, sync = True, waitForSettling = True)
17-03-18 06:52:44.084 -07 000000610 INF: Z Motor: Moving to -0.127709 mm, started at -0.134572 mm, distance = 6.86 um
17-03-18 06:52:44.084 -07 000000610 INF: FPGA: Xmit ZDACW 27898\n [Z Motor]
17-03-18 06:52:44.084 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 06:52:44.094 -07 000000610 INF: FPGA: 'ZDACW 27898' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:52:44.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:44.094 -07 000000479 INF: FPGA: Recv ZDACR 27898
17-03-18 06:52:44.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:44.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:44.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:44.254 -07 000000461 INF: FPGA: Recv ZSGSRD 29172
17-03-18 06:52:44.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:44.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:44.264 -07 000000479 INF: FPGA: Recv ZSGSRD 29169
17-03-18 06:52:44.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:44.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:44.274 -07 000000474 INF: FPGA: Recv ZSGSRD 29171
17-03-18 06:52:44.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:44.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:44.284 -07 000000606 INF: FPGA: Recv ZSGSRD 29166
17-03-18 06:52:44.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:44.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:44.294 -07 000000461 INF: FPGA: Recv ZSGSRD 29172
17-03-18 06:52:44.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:44.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:44.304 -07 000000479 INF: FPGA: Recv ZSGSRD 29171
17-03-18 06:52:44.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:44.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:44.324 -07 000000461 INF: FPGA: Recv ZSGSRD 29176
17-03-18 06:52:44.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:44.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:44.344 -07 000000606 INF: FPGA: Recv ZSGSRD 29169
17-03-18 06:52:44.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 06:52:44.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:44.344 -07 000000501 INF: FPGA: Recv ZSGSRD 29169
17-03-18 06:52:44.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:52:44.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:44.354 -07 000000455 INF: FPGA: Recv ZSGSRD 29167
17-03-18 06:52:44.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:44.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:44.364 -07 000000479 INF: FPGA: Recv ZPIEZORD 24657
17-03-18 06:52:44.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:44.374 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.257 V. Piezo Error = -9.9 V.
17-03-18 06:52:44.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29170 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29170 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29166 (-126.9 uncal um), Max = 29176 (-127.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:52:44.374 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29170, posNoise = 6, negNoise = 4
17-03-18 06:52:44.374 -07 000000610 INF: Z Motor: After move to -0.127709, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:44.374 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 06:52:44.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:44.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:44.374 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:44.374 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:44.374 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:44.374 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:44.374 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:44.374 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:44.374 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:52:44.374 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:44.374 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:52:44.374 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:44.384 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:52:44.384 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:44.384 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:52:44.384 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:44.394 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 06:52:44.394 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:52:44.394 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:52:44.394 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 06:52:44.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28074 150\n [Camera]
17-03-18 06:52:44.594 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:45.064 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:52:45.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:52:45.064 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:45.064 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:45.064 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:52:45.064 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:52:45.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:52:45.064 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:45.064 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:45.064 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:52:45.254 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28074 853
17-03-18 06:52:45.404 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:45.444 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:52:45.444 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:52:45.444 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:45.444 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:52:45.444 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:52:45.444 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:52:45.444 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:45.454 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:45.454 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:52:45.454 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:52:45.634 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:45.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:45.634 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:45.754 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:45.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:45.764 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:45.764 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:45.764 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:45.764 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:52:45.764 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 06:52:45.824 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:52:45.824 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:45.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28074 150' command took 2 ms to send, 1423 ms to get response, and 1428 ms overall
17-03-18 06:52:45.824 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.127716
17-03-18 06:52:45.824 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12772 mm
17-03-18 06:52:45.824 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:45.824 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:52:45.824 -07 000000461 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 06:52:45.824 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:45.824 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 27900, sync = True, waitForSettling = False)
17-03-18 06:52:45.834 -07 000000474 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:52:45.834 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:52:45.834 -07 000000461 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:45.834 -07 000000461 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:45.834 -07 000000461 INF: Y Motor: Moving 1356 steps-35
17-03-18 06:52:45.834 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:46.154 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:52:46.154 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:52:46.154 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:46.154 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:52:46.154 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:52:46.154 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:46.154 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:46.154 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:46.154 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 06:52:46.164 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:52:46.214 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 06:52:46.214 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 380 ms overall
17-03-18 06:52:46.254 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:46.254 -07 000000479 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:52:46.264 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:52:46.264 -07 000000461 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:46.264 -07 000000461 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:52:46.264 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.847 mm, average velocity = 2.230 mm/sec
17-03-18 06:52:46.904 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:52:46.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:52:47.214 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:47.214 -07 000000608 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:52:47.224 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.224 -07 000000461 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:47.244 -07 000000461 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:47.244 -07 000000461 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:52:47.244 -07 000000461 INF: Y Motor: Moved to 74.0073 after 1420 ms (table move)
17-03-18 06:52:47.254 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.127718 mm (DAC = 27900)
17-03-18 06:52:47.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.254 -07 000000474 INF: FPGA: Recv ZSGSRD 29299
17-03-18 06:52:47.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.264 -07 000000501 INF: FPGA: Recv ZSGSRD 29297
17-03-18 06:52:47.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.274 -07 000000606 INF: FPGA: Recv ZSGSRD 29291
17-03-18 06:52:47.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.284 -07 000000501 INF: FPGA: Recv ZSGSRD 29291
17-03-18 06:52:47.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.294 -07 000000461 INF: FPGA: Recv ZSGSRD 29297
17-03-18 06:52:47.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.304 -07 000000501 INF: FPGA: Recv ZSGSRD 29290
17-03-18 06:52:47.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.314 -07 000000608 INF: FPGA: Recv ZSGSRD 29302
17-03-18 06:52:47.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.324 -07 000000606 INF: FPGA: Recv ZSGSRD 29299
17-03-18 06:52:47.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.334 -07 000000608 INF: FPGA: Recv ZSGSRD 29295
17-03-18 06:52:47.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.344 -07 000000606 INF: FPGA: Recv ZSGSRD 29293
17-03-18 06:52:47.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:47.354 -07 000000501 INF: FPGA: Recv ZPIEZORD 24857
17-03-18 06:52:47.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.364 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.257 V. Piezo Error = -9.5 V.
17-03-18 06:52:47.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29295 (-127.7 uncal um), Error = 0.0 uncal um, Median = 29296 (-127.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29290 (-127.7 uncal um), Max = 29302 (-127.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:52:47.364 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29295, posNoise = 7, negNoise = 5
17-03-18 06:52:47.364 -07 000000610 INF: Z Motor: After move to -0.127718, error = -0.000803, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:47.364 -07 000000610 INF: Z Motor: Settle wait time = 3168 ms, measure time = 110 ms (allowed 150 ms), total time = 3278 ms
17-03-18 06:52:47.364 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 06:52:47.404 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-18 06:52:47.404 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:47.404 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.128520646704022. ----------
17-03-18 06:52:47.404 -07 000000610 INF: Cycle	154	Tile	18	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:47.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27723, sync = True, waitForSettling = True)
17-03-18 06:52:47.404 -07 000000610 INF: Z Motor: Moving to -0.126908 mm, started at -0.128521 mm, distance = 1.61 um
17-03-18 06:52:47.404 -07 000000610 INF: FPGA: Xmit ZDACW 27723\n [Z Motor]
17-03-18 06:52:47.414 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 06:52:47.414 -07 000000610 INF: FPGA: 'ZDACW 27723' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 06:52:47.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:47.414 -07 000000474 INF: FPGA: Recv ZDACR 27723
17-03-18 06:52:47.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:52:47.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:47.544 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.988112,
17-03-18 06:52:47.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.574 -07 000000461 INF: FPGA: Recv ZSGSRD 29048
17-03-18 06:52:47.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:47.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.594 -07 000000474 INF: FPGA: Recv ZSGSRD 29043
17-03-18 06:52:47.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:52:47.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.604 -07 000000479 INF: FPGA: Recv ZSGSRD 29042
17-03-18 06:52:47.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.614 -07 000000474 INF: FPGA: Recv ZSGSRD 29045
17-03-18 06:52:47.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.624 -07 000000501 INF: FPGA: Recv ZSGSRD 29041
17-03-18 06:52:47.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.634 -07 000000461 INF: FPGA: Recv ZSGSRD 29042
17-03-18 06:52:47.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.644 -07 000000474 INF: FPGA: Recv ZSGSRD 29038
17-03-18 06:52:47.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.654 -07 000000608 INF: FPGA: Recv ZSGSRD 29044
17-03-18 06:52:47.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.664 -07 000000501 INF: FPGA: Recv ZSGSRD 29045
17-03-18 06:52:47.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:47.674 -07 000000608 INF: FPGA: Recv ZSGSRD 29045
17-03-18 06:52:47.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:47.684 -07 000000501 INF: FPGA: Recv ZPIEZORD 24507
17-03-18 06:52:47.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:47.694 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.230 V. Piezo Error = -9.9 V.
17-03-18 06:52:47.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29043 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29044 (-126.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29038 (-126.1 uncal um), Max = 29048 (-126.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:52:47.694 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29043, posNoise = 5, negNoise = 5
17-03-18 06:52:47.694 -07 000000610 INF: Z Motor: After move to -0.126908, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:47.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-18 06:52:47.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:47.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:47.694 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:47.694 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:47.694 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:47.694 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:47.694 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:47.694 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:47.694 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 06:52:47.694 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:47.694 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:52:47.694 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:47.704 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:52:47.704 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:47.704 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:52:47.704 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:47.714 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:52:47.714 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:52:47.714 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:52:47.714 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:52:47.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 27900 150\n [Camera]
17-03-18 06:52:47.914 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:48.384 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:52:48.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:52:48.384 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:48.384 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:52:48.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:52:48.384 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:48.384 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:48.384 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:52:48.394 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:48.394 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:52:48.574 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27900 853
17-03-18 06:52:48.724 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:48.874 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 481 ms.
17-03-18 06:52:48.874 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 481 ms.
17-03-18 06:52:48.874 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:48.874 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 484 ms.
17-03-18 06:52:48.874 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 485 ms.
17-03-18 06:52:48.874 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:48.874 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:48.874 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:48.874 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-18 06:52:48.884 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-18 06:52:48.944 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:48.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:48.954 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:48.954 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:48.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:48.954 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:48.954 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:48.954 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 06:52:48.954 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:48.954 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:52:49.144 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:52:49.144 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:49.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 27900 150' command took 2 ms to send, 1421 ms to get response, and 1427 ms overall
17-03-18 06:52:49.144 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.127282
17-03-18 06:52:49.144 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12728 mm
17-03-18 06:52:49.144 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:52:49.144 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 27805, sync = True, waitForSettling = False)
17-03-18 06:52:49.144 -07 000000461 INF: Z Motor: Moving to -0.127283 mm, started at -0.126902 mm, distance = -0.38 um
17-03-18 06:52:49.144 -07 000000461 INF: FPGA: Xmit ZDACW 27805\n [Z Motor]
17-03-18 06:52:49.144 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:52:49.144 -07 000000455 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 06:52:49.144 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:52:49.154 -07 000000461 INF: FPGA: 'ZDACW 27805' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:52:49.154 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:49.154 -07 000000479 INF: FPGA: Recv ZDACR 27805
17-03-18 06:52:49.164 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:49.164 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:49.164 -07 000000461 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-18 06:52:49.164 -07 000000479 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:52:49.174 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:52:49.174 -07 000000455 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:49.174 -07 000000455 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:52:49.174 -07 000000455 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:52:49.174 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:52:49.334 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:52:49.344 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:52:49.344 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:49.344 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:52:49.344 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:52:49.344 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:49.344 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:52:49.344 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:52:49.344 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:52:49.354 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:52:49.544 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:52:49.544 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 06:52:49.584 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:49.584 -07 000000479 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:52:49.594 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:52:49.594 -07 000000455 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:49.594 -07 000000455 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 06:52:49.594 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.236 mm/sec
17-03-18 06:52:50.544 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:50.544 -07 000000590 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:52:50.554 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:50.554 -07 000000455 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:50.574 -07 000000455 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:50.574 -07 000000455 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:52:50.574 -07 000000455 INF: Y Motor: Moved to 74.8311 after 1424 ms (table move)
17-03-18 06:52:50.574 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.127283 mm (DAC = 27805)
17-03-18 06:52:50.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.574 -07 000000590 INF: FPGA: Recv ZSGSRD 29106
17-03-18 06:52:50.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:52:50.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.584 -07 000000479 INF: FPGA: Recv ZSGSRD 29101
17-03-18 06:52:50.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.594 -07 000000590 INF: FPGA: Recv ZSGSRD 29105
17-03-18 06:52:50.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.604 -07 000000479 INF: FPGA: Recv ZSGSRD 29109
17-03-18 06:52:50.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.614 -07 000000461 INF: FPGA: Recv ZSGSRD 29106
17-03-18 06:52:50.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.624 -07 000000479 INF: FPGA: Recv ZSGSRD 29105
17-03-18 06:52:50.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.634 -07 000000462 INF: FPGA: Recv ZSGSRD 29109
17-03-18 06:52:50.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.644 -07 000000479 INF: FPGA: Recv ZSGSRD 29101
17-03-18 06:52:50.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.654 -07 000000461 INF: FPGA: Recv ZSGSRD 29098
17-03-18 06:52:50.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.664 -07 000000479 INF: FPGA: Recv ZSGSRD 29102
17-03-18 06:52:50.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:50.674 -07 000000462 INF: FPGA: Recv ZPIEZORD 24605
17-03-18 06:52:50.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.684 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.243 V. Piezo Error = -9.9 V.
17-03-18 06:52:50.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29104 (-126.5 uncal um), Error = 0.8 uncal um, Median = 29105 (-126.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29098 (-126.5 uncal um), Max = 29109 (-126.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:52:50.684 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29104, posNoise = 5, negNoise = 6
17-03-18 06:52:50.684 -07 000000610 INF: Z Motor: After move to -0.127283, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:50.684 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 107 ms (allowed 150 ms), total time = 1534 ms
17-03-18 06:52:50.684 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:52:50.734 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-18 06:52:50.734 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:52:50.734 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.127293622184946. ----------
17-03-18 06:52:50.734 -07 000000610 INF: Cycle	154	Tile	19	Exposure Settings		A	468	G	225	T	225	C	468
17-03-18 06:52:50.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27628, sync = True, waitForSettling = True)
17-03-18 06:52:50.734 -07 000000610 INF: Z Motor: Moving to -0.126473 mm, started at -0.127294 mm, distance = 0.82 um
17-03-18 06:52:50.734 -07 000000610 INF: FPGA: Xmit ZDACW 27628\n [Z Motor]
17-03-18 06:52:50.734 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:52:50.744 -07 000000610 INF: FPGA: 'ZDACW 27628' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:52:50.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:52:50.744 -07 000000455 INF: FPGA: Recv ZDACR 27628
17-03-18 06:52:50.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:52:50.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.904 -07 000000606 INF: FPGA: Recv ZSGSRD 28981
17-03-18 06:52:50.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:50.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.914 -07 000000461 INF: FPGA: Recv ZSGSRD 28977
17-03-18 06:52:50.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.924 -07 000000606 INF: FPGA: Recv ZSGSRD 28984
17-03-18 06:52:50.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.934 -07 000000461 INF: FPGA: Recv ZSGSRD 28973
17-03-18 06:52:50.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.944 -07 000000455 INF: FPGA: Recv ZSGSRD 28972
17-03-18 06:52:50.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.954 -07 000000606 INF: FPGA: Recv ZSGSRD 28976
17-03-18 06:52:50.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.964 -07 000000455 INF: FPGA: Recv ZSGSRD 28974
17-03-18 06:52:50.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.974 -07 000000590 INF: FPGA: Recv ZSGSRD 28971
17-03-18 06:52:50.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.984 -07 000000462 INF: FPGA: Recv ZSGSRD 28971
17-03-18 06:52:50.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:50.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:52:50.994 -07 000000479 INF: FPGA: Recv ZSGSRD 28985
17-03-18 06:52:51.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:51.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:52:51.004 -07 000000606 INF: FPGA: Recv ZPIEZORD 24410
17-03-18 06:52:51.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:51.014 -07 000000610 INF: Z Motor: Piezo is near 32.1 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.216 V. Piezo Error = -10.0 V.
17-03-18 06:52:51.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28976 (-125.7 uncal um), Error = 0.8 uncal um, Median = 28975 (-125.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 28971 (-125.7 uncal um), Max = 28985 (-125.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:52:51.014 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28976, posNoise = 9, negNoise = 5
17-03-18 06:52:51.014 -07 000000610 INF: Z Motor: After move to -0.126473, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:52:51.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:52:51.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:52:51.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:52:51.014 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:52:51.014 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:52:51.014 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:52:51.014 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:52:51.014 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:52:51.014 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:52:51.014 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:52:51.014 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:52:51.014 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:52:51.014 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:52:51.024 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:52:51.024 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:52:51.024 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:52:51.024 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:52:51.034 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:52:51.034 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:52:51.034 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:52:51.034 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:52:51.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 27805 150\n [Camera]
17-03-18 06:52:51.244 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:52:51.704 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-18 06:52:51.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-18 06:52:51.714 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:51.714 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:51.714 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) start.
17-03-18 06:52:51.714 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-18 06:52:51.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-18 06:52:51.714 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:51.714 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:51.714 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:52:51.904 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27805 853
17-03-18 06:52:51.904 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:52:51.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 153. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:52:52.054 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-18 06:52:52.084 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2619164976, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:52:52.084 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:52:52.084 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:52.084 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:52:52.084 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:52:52.084 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:52.094 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:52.094 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:52:52.094 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:52:52.104 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:52:52.274 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-18 06:52:52.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-18 06:52:52.274 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:52:52.274 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:52:52.274 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:52:52.274 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-18 06:52:52.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-18 06:52:52.284 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:52:52.284 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:52:52.284 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:52:52.464 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-18 06:52:52.464 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:52:52.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 27805 150' command took 2 ms to send, 1418 ms to get response, and 1427 ms overall
17-03-18 06:52:52.684 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:52:52.684 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:52:52.684 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:52.684 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:52:52.684 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:52:52.684 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:52:52.684 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:52:52.684 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 06:52:52.684 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:52:52.684 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:52:52.694 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 06:52:52.734 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:52:52.734 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:52:52.774 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 06:52:52.784 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 06:52:52.784 -07 000000610 INF: Imaging Cycle 154: ScanTilesCommand Cycle 154 time end. Duration was 148472 ms.
17-03-18 06:52:52.784 -07 000000610 INF: =================== Cycle #154 ===================
17-03-18 06:52:52.784 -07 000000610 INF: ===================  ===================
17-03-18 06:52:52.784 -07 000000585 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:52:52.784 -07 000000447 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 06:52:52.794 -07 000000585 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:52:52.794 -07 000000585 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 06:52:52.794 -07 000000585 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 154, FrontChillerTemperature: 3.988112, FrontChillerHeatSinkTemperature: 0.575719, AmbientTemperature: 18.74165, FlowCellCompartmentTemperature: 21.99836, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.62478, GreenLEDSensorTemperature: 25.50565, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 06:52:52.914 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.988112,
17-03-18 06:52:52.924 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.