17-03-18 06:52:52.984 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:52:52.984 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 06:52:52.984 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 06:52:52.984 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:52.984 -07 000000462 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:52:52.994 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:52:52.994 -07 000000610 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:52.994 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 06:52:52.994 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 06:52:52.994 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 06:52:53.104 -07 000000444 INF: FPGA: Recv YMVTO 154378 873
17-03-18 06:52:53.104 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 115 ms overall
17-03-18 06:52:53.104 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 06:52:53.104 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 879 steps, but required 873 steps (0.546 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 06:52:53.104 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.550 mm, average velocity = 4.737 mm/sec
17-03-18 06:52:56.104 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:52:56.104 -07 000000444 INF: FPGA: Recv YRDPOS 154379
17-03-18 06:52:56.114 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:52:56.114 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:52:56.144 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:52:56.144 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:52:56.144 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3164 ms
17-03-18 06:52:56.154 -07 000000610 INF: =================== Cycle #155, Flow Cell Temp 60° ===================
17-03-18 06:52:56.154 -07 000000610 INF: =================== Cycle #155, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 06:52:56.154 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 06:52:56.154 -07 000000585 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:52:56.164 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:52:56.164 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:52:56.164 -07 000000606 INF: FlowCellTempControl: Setting temperature polling rate to 00:00:01 ms
17-03-18 06:52:56.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.56477,  FlowCellCompartmentTemperature: 21.99981, AmbientTemperature: 18.72197
17-03-18 06:52:56.164 -07 000000590 INF: FPGA: Recv TEC2EN 
17-03-18 06:52:56.174 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:52:56.174 -07 000000610 INF: =================== Cycle #155, Flow Cell Temp 60° ===================
17-03-18 06:52:56.174 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:52:56.174 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:52:56.174 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:52:56.204 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:52:56.204 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 06:52:56.204 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:52:56.504 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:52:56.524 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:52:56.524 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:52:56.574 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:52:56.594 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:52:56.594 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:52:56.694 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:52:56.694 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:52:56.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:52:56.724 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:52:56.724 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:52:56.724 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:52:56.854 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:52:56.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:52:56.904 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:52:56.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2015, R2=2096, Total=4111. Warn if over 250 bubbles per interval.
17-03-18 06:52:57.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.56477,  FlowCellCompartmentTemperature: 21.99981, AmbientTemperature: 18.72197
17-03-18 06:52:58.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.56477,  FlowCellCompartmentTemperature: 21.99981, AmbientTemperature: 18.72197
17-03-18 06:52:58.274 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.988112,
17-03-18 06:52:59.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.34821,  FlowCellCompartmentTemperature: 34.60222, AmbientTemperature: 18.70127
17-03-18 06:53:00.024 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:00.054 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:00.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.12364,  FlowCellCompartmentTemperature: 43.58549, AmbientTemperature: 18.70028
17-03-18 06:53:00.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:00.504 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:00.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:00.954 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:00.954 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:53:00.954 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:53:01.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:01.114 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:53:01.114 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:53:01.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.94324,  FlowCellCompartmentTemperature: 51.18353, AmbientTemperature: 18.70028
17-03-18 06:53:01.244 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:01.274 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:53:01.274 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:53:01.274 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:53:01.404 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:53:01.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:01.864 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:01.894 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:01.894 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:53:01.894 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:53:01.904 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 06:53:01.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2017, R2=2098, Total=4115. Warn if over 250 bubbles per interval.
17-03-18 06:53:02.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.94324,  FlowCellCompartmentTemperature: 51.18353, AmbientTemperature: 18.69817
17-03-18 06:53:03.114 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:53:03.114 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 06:53:03.114 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:53:03.134 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:53:03.134 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 06:53:03.134 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 06:53:03.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.82827,  FlowCellCompartmentTemperature: 57.55922, AmbientTemperature: 18.69714
17-03-18 06:53:03.264 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:53:03.284 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 06:53:03.284 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 06:53:03.334 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:53:03.354 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:53:03.354 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:53:03.454 -07 000000610 INF: =================== Cycle #155, Pumping Reagent CMS (4) ===================
17-03-18 06:53:03.454 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:53:03.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:03.484 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:53:03.484 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:53:03.484 -07 000000610 INF: =================== Cycle #155, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 06:53:03.614 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:53:03.634 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.986717,
17-03-18 06:53:03.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:04.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.79058,  FlowCellCompartmentTemperature: 60.14338, AmbientTemperature: 18.69714
17-03-18 06:53:05.094 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:05.124 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:05.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.79058,  FlowCellCompartmentTemperature: 60.14338, AmbientTemperature: 18.69405
17-03-18 06:53:05.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:05.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:05.574 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:53:05.574 -07 000000610 INF: =================== Cycle #155, Pumping Reagent CMS (4) ===================
17-03-18 06:53:05.704 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:05.734 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:53:05.734 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:53:05.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:05.894 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:53:05.894 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:53:05.894 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:53:06.024 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:53:06.054 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:06.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.83663,  FlowCellCompartmentTemperature: 59.87152, AmbientTemperature: 18.68885
17-03-18 06:53:06.484 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:06.514 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:06.514 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:53:06.514 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:53:06.904 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:53:06.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2017, R2=2098, Total=4115. Warn if over 250 bubbles per interval.
17-03-18 06:53:07.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.92233,  FlowCellCompartmentTemperature: 59.71671, AmbientTemperature: 18.68988
17-03-18 06:53:07.734 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:53:07.734 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:53:07.734 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:53:07.754 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:53:07.754 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 06:53:07.754 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 06:53:07.904 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:53:07.924 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 06:53:07.924 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 06:53:07.974 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:53:07.994 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:53:07.994 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:53:08.094 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:53:08.094 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:53:08.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:08.124 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:53:08.124 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:53:08.124 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:53:08.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.98918,  FlowCellCompartmentTemperature: 59.95461, AmbientTemperature: 18.68988
17-03-18 06:53:08.254 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:53:08.294 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:08.994 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.005817,
17-03-18 06:53:09.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 17.98918,  FlowCellCompartmentTemperature: 59.95461, AmbientTemperature: 18.6816
17-03-18 06:53:09.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:09.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:09.194 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 06:53:09.194 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:53:09.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:09.354 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:53:09.354 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:53:09.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:09.514 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:53:09.514 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:53:09.514 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:53:09.644 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:53:09.674 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:10.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:10.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:10.134 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:53:10.134 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:53:10.134 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:53:10.134 -07 000000479 INF: WaitCommand(10000) start
17-03-18 06:53:10.134 -07 000000462 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:53:10.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.05073,  FlowCellCompartmentTemperature: 60.13345, AmbientTemperature: 18.6816
17-03-18 06:53:11.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.10389,  FlowCellCompartmentTemperature: 60.16576, AmbientTemperature: 18.67537
17-03-18 06:53:11.354 -07 000000462 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:53:11.354 -07 000000462 INF: LanePump: Xmit /1?\r
17-03-18 06:53:11.384 -07 000000462 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:53:11.384 -07 000000462 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:53:11.514 -07 000000462 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:53:11.554 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:11.904 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-18 06:53:11.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2019, R2=2098, Total=4117. Warn if over 250 bubbles per interval.
17-03-18 06:53:12.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.1528,  FlowCellCompartmentTemperature: 60.15708, AmbientTemperature: 18.67537
17-03-18 06:53:13.084 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:13.114 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:13.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.1528,  FlowCellCompartmentTemperature: 60.15708, AmbientTemperature: 18.67124
17-03-18 06:53:13.534 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:13.564 -07 000000462 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:13.564 -07 000000462 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:53:13.564 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:53:13.564 -07 000000462 INF: ===================  ===================
17-03-18 06:53:14.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.20378,  FlowCellCompartmentTemperature: 60.167, AmbientTemperature: 18.66712
17-03-18 06:53:14.354 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.011254,
17-03-18 06:53:15.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.25372,  FlowCellCompartmentTemperature: 60.15335, AmbientTemperature: 18.66399
17-03-18 06:53:16.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.29421,  FlowCellCompartmentTemperature: 60.1347, AmbientTemperature: 18.66399
17-03-18 06:53:16.904 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:53:16.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2019, R2=2098, Total=4117. Warn if over 250 bubbles per interval.
17-03-18 06:53:17.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.29421,  FlowCellCompartmentTemperature: 60.1347, AmbientTemperature: 18.6557
17-03-18 06:53:18.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.33682,  FlowCellCompartmentTemperature: 60.11108, AmbientTemperature: 18.64844
17-03-18 06:53:19.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.36586,  FlowCellCompartmentTemperature: 60.09616, AmbientTemperature: 18.65261
17-03-18 06:53:19.714 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.031682,
17-03-18 06:53:20.144 -07 000000479 INF: WaitCommand(10000) end
17-03-18 06:53:20.144 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:53:20.144 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 06:53:20.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:20.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.36586,  FlowCellCompartmentTemperature: 60.09616, AmbientTemperature: 18.65261
17-03-18 06:53:20.174 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:53:20.174 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:53:20.174 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:53:20.304 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 06:53:20.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:21.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.41565,  FlowCellCompartmentTemperature: 60.07378, AmbientTemperature: 18.64948
17-03-18 06:53:21.904 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-18 06:53:21.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2019, R2=2100, Total=4119. Warn if over 250 bubbles per interval.
17-03-18 06:53:22.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.44574,  FlowCellCompartmentTemperature: 60.05639, AmbientTemperature: 18.64222
17-03-18 06:53:23.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.48197,  FlowCellCompartmentTemperature: 60.01295, AmbientTemperature: 18.64222
17-03-18 06:53:24.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.48197,  FlowCellCompartmentTemperature: 60.01295, AmbientTemperature: 18.64432
17-03-18 06:53:25.074 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.019446,
17-03-18 06:53:25.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.5213,  FlowCellCompartmentTemperature: 59.95586, AmbientTemperature: 18.64325
17-03-18 06:53:26.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.55241,  FlowCellCompartmentTemperature: 59.95586, AmbientTemperature: 18.63913
17-03-18 06:53:26.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:26.504 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:26.904 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 10 R1 9
17-03-18 06:53:26.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=9, R2=10, Total=19. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2028, R2=2110, Total=4138. Warn if over 250 bubbles per interval.
17-03-18 06:53:26.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:26.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:27.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.58756,  FlowCellCompartmentTemperature: 59.9757, AmbientTemperature: 18.63913
17-03-18 06:53:27.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:27.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:27.824 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:27.854 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:28.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.58756,  FlowCellCompartmentTemperature: 59.9757, AmbientTemperature: 18.64119
17-03-18 06:53:28.274 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:28.304 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:28.304 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 06:53:28.304 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:53:28.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:28.464 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:53:28.464 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:53:28.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:28.624 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:53:28.624 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:53:28.624 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:53:28.754 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:53:28.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:29.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.60618,  FlowCellCompartmentTemperature: 59.98316, AmbientTemperature: 18.64119
17-03-18 06:53:29.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:29.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:29.244 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:53:29.244 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:53:30.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.63096,  FlowCellCompartmentTemperature: 59.99431, AmbientTemperature: 18.636
17-03-18 06:53:30.434 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.023489,
17-03-18 06:53:30.464 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 06:53:30.464 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 06:53:30.464 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:53:30.484 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:53:30.484 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 06:53:30.484 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 06:53:30.694 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:53:30.714 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 06:53:30.714 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 06:53:30.764 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:53:30.784 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:53:30.784 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:53:30.884 -07 000000610 INF: =================== Cycle #155, Pumping Reagent IMT (1) ===================
17-03-18 06:53:30.884 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:53:30.884 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:30.914 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:53:30.914 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:53:30.914 -07 000000610 INF: =================== Cycle #155, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 06:53:31.044 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:53:31.084 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:31.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.65166,  FlowCellCompartmentTemperature: 60.03774, AmbientTemperature: 18.636
17-03-18 06:53:31.904 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-18 06:53:31.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2112, Total=4141. Warn if over 250 bubbles per interval.
17-03-18 06:53:32.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.65166,  FlowCellCompartmentTemperature: 60.03774, AmbientTemperature: 18.64016
17-03-18 06:53:32.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:32.554 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:32.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:33.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:33.004 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:53:33.004 -07 000000610 INF: =================== Cycle #155, Pumping Reagent IMT (1) ===================
17-03-18 06:53:33.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:33.164 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:53:33.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.68988,  FlowCellCompartmentTemperature: 60.06384, AmbientTemperature: 18.64016
17-03-18 06:53:33.164 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:53:33.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:33.324 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:53:33.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:53:33.324 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:53:33.454 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:53:33.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:33.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:33.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:33.944 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:53:33.944 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:53:34.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.70638,  FlowCellCompartmentTemperature: 60.01913, AmbientTemperature: 18.636
17-03-18 06:53:35.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.74046,  FlowCellCompartmentTemperature: 60.01543, AmbientTemperature: 18.636
17-03-18 06:53:35.164 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:53:35.164 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:53:35.164 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:53:35.184 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:53:35.184 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 06:53:35.184 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:53:35.414 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:53:35.434 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 06:53:35.434 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 06:53:35.484 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:53:35.504 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:53:35.504 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:53:35.604 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:53:35.604 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:53:35.604 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:35.634 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:53:35.634 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:53:35.634 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:53:35.764 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:53:35.794 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.028963,
17-03-18 06:53:35.804 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:53:36.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.74046,  FlowCellCompartmentTemperature: 60.01543, AmbientTemperature: 18.63806
17-03-18 06:53:36.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:36.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:36.704 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:53:36.704 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:53:36.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:36.864 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:53:36.864 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:53:36.904 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:53:36.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:53:36.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:53:37.024 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:53:37.024 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:53:37.024 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:53:37.154 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:53:37.164 -07 000000606 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 60, FlowCellHeatSinkTemperature: 18.76625,  FlowCellCompartmentTemperature: 60.03902, AmbientTemperature: 18.63806
17-03-18 06:53:37.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:37.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:53:37.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:53:37.644 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:53:37.644 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:53:37.644 -07 000000610 INF: =================== Cycle #155, Flow Cell Temp 65° ===================
17-03-18 06:53:37.644 -07 000000610 INF: =================== Cycle #155, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 06:53:37.644 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 06:53:37.644 -07 000000585 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:53:37.654 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:53:37.654 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:53:37.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.76625,  FlowCellCompartmentTemperature: 60.03902, AmbientTemperature: 18.63806
17-03-18 06:53:37.654 -07 000000480 INF: FPGA: Recv TEC2EN 
17-03-18 06:53:37.664 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:53:37.664 -07 000000610 INF: =================== Cycle #155, Flow Cell Temp 65° ===================
17-03-18 06:53:37.664 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:53:37.664 -07 000000610 INF: WaitCommand(30000) start
17-03-18 06:53:37.724 -07 000000606 INF: FlowCellTempControl: Setting temperature polling rate to 00:00:05 ms
17-03-18 06:53:38.654 -07 000000462 INF: FlowCellTempControl: Setting temperature polling rate to 00:00:01 ms
17-03-18 06:53:38.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.79308,  FlowCellCompartmentTemperature: 60.04023, AmbientTemperature: 18.63707
17-03-18 06:53:39.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.79308,  FlowCellCompartmentTemperature: 60.04023, AmbientTemperature: 18.63707
17-03-18 06:53:40.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.79308,  FlowCellCompartmentTemperature: 60.04023, AmbientTemperature: 18.63707
17-03-18 06:53:41.154 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.02213,
17-03-18 06:53:41.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.79308,  FlowCellCompartmentTemperature: 60.04023, AmbientTemperature: 18.63707
17-03-18 06:53:41.904 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:53:41.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:53:42.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.79308,  FlowCellCompartmentTemperature: 60.04023, AmbientTemperature: 18.63707
17-03-18 06:53:43.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.82503,  FlowCellCompartmentTemperature: 64.4707, AmbientTemperature: 18.63496
17-03-18 06:53:44.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.85592,  FlowCellCompartmentTemperature: 64.63876, AmbientTemperature: 18.63496
17-03-18 06:53:45.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.85592,  FlowCellCompartmentTemperature: 64.63876, AmbientTemperature: 18.6329
17-03-18 06:53:46.584 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.98264,
17-03-18 06:53:46.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.89507,  FlowCellCompartmentTemperature: 64.79932, AmbientTemperature: 18.63393
17-03-18 06:53:46.904 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:53:46.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:53:47.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.93213,  FlowCellCompartmentTemperature: 64.87969, AmbientTemperature: 18.63496
17-03-18 06:53:48.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.93213,  FlowCellCompartmentTemperature: 64.87969, AmbientTemperature: 18.63496
17-03-18 06:53:49.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.9692,  FlowCellCompartmentTemperature: 64.92191, AmbientTemperature: 18.63913
17-03-18 06:53:50.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 18.99797,  FlowCellCompartmentTemperature: 64.9536, AmbientTemperature: 18.63707
17-03-18 06:53:51.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.03188,  FlowCellCompartmentTemperature: 64.98, AmbientTemperature: 18.63707
17-03-18 06:53:51.904 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:53:51.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:53:52.024 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.962185,
17-03-18 06:53:52.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.03188,  FlowCellCompartmentTemperature: 64.98, AmbientTemperature: 18.64016
17-03-18 06:53:53.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.06989,  FlowCellCompartmentTemperature: 64.99055, AmbientTemperature: 18.6329
17-03-18 06:53:54.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.10485,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.63806
17-03-18 06:53:55.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.14073,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.63806
17-03-18 06:53:56.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.14073,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.63806
17-03-18 06:53:56.904 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:53:56.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:53:57.464 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.966297,
17-03-18 06:53:57.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.16945,  FlowCellCompartmentTemperature: 65.01301, AmbientTemperature: 18.63393
17-03-18 06:53:58.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.19512,  FlowCellCompartmentTemperature: 65.00639, AmbientTemperature: 18.63707
17-03-18 06:53:59.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.22278,  FlowCellCompartmentTemperature: 65.01301, AmbientTemperature: 18.63707
17-03-18 06:54:00.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.22278,  FlowCellCompartmentTemperature: 65.01301, AmbientTemperature: 18.63707
17-03-18 06:54:01.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.25248,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.63707
17-03-18 06:54:01.904 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:54:01.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:54:02.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.28629,  FlowCellCompartmentTemperature: 65.00773, AmbientTemperature: 18.63913
17-03-18 06:54:02.904 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.990831,
17-03-18 06:54:03.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.30986,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.63913
17-03-18 06:54:04.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.30986,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.64432
17-03-18 06:54:05.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.34058,  FlowCellCompartmentTemperature: 65.00506, AmbientTemperature: 18.64222
17-03-18 06:54:06.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.37229,  FlowCellCompartmentTemperature: 65.01565, AmbientTemperature: 18.64222
17-03-18 06:54:06.904 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:54:06.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:54:07.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.37229,  FlowCellCompartmentTemperature: 65.01565, AmbientTemperature: 18.64432
17-03-18 06:54:07.674 -07 000000610 INF: WaitCommand(30000) end
17-03-18 06:54:07.674 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:54:07.674 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 06:54:07.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:54:07.804 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:54:07.804 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:54:07.804 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:54:07.934 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 06:54:07.974 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:54:08.344 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.005817,
17-03-18 06:54:08.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:08.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:08.544 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 06:54:08.544 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:54:08.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.3968,  FlowCellCompartmentTemperature: 65.00639, AmbientTemperature: 18.64844
17-03-18 06:54:08.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:54:08.704 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:54:08.704 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:54:08.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:54:08.864 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:54:08.864 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:54:08.864 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:54:08.994 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:54:09.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:09.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:09.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:09.484 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:54:09.484 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:54:09.484 -07 000000606 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:54:09.484 -07 000000606 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:54:09.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.42442,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.64741
17-03-18 06:54:10.314 -07 000000430 INF: WaitCommand(30000) start
17-03-18 06:54:10.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.42442,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.64741
17-03-18 06:54:10.704 -07 000000606 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:54:10.704 -07 000000606 INF: LanePump: Xmit /1?\r
17-03-18 06:54:11.324 -07 000000606 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:54:11.324 -07 000000606 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:54:11.454 -07 000000606 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:54:11.494 -07 000000606 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:54:11.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.45097,  FlowCellCompartmentTemperature: 65.00773, AmbientTemperature: 18.64948
17-03-18 06:54:11.904 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:54:11.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:54:12.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.45097,  FlowCellCompartmentTemperature: 65.00773, AmbientTemperature: 18.64948
17-03-18 06:54:13.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.48673,  FlowCellCompartmentTemperature: 65.00506, AmbientTemperature: 18.65261
17-03-18 06:54:13.704 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.018051,
17-03-18 06:54:13.834 -07 000000606 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:13.864 -07 000000606 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:54:14.284 -07 000000606 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:14.314 -07 000000606 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:14.314 -07 000000606 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 06:54:14.314 -07 000000606 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:54:14.314 -07 000000606 INF: ===================  ===================
17-03-18 06:54:14.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.51533,  FlowCellCompartmentTemperature: 65.00773, AmbientTemperature: 18.65364
17-03-18 06:54:15.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.54796,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.65364
17-03-18 06:54:16.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.54796,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.65364
17-03-18 06:54:16.904 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:54:16.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:54:17.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.56228,  FlowCellCompartmentTemperature: 65.00773, AmbientTemperature: 18.65673
17-03-18 06:54:18.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.59388,  FlowCellCompartmentTemperature: 65.00773, AmbientTemperature: 18.65051
17-03-18 06:54:19.064 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.001704,
17-03-18 06:54:19.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.6051,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.65051
17-03-18 06:54:20.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.6051,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.65673
17-03-18 06:54:21.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.6316,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.65986
17-03-18 06:54:21.904 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:54:21.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:54:22.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.654,  FlowCellCompartmentTemperature: 64.99979, AmbientTemperature: 18.65261
17-03-18 06:54:23.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.67847,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.65261
17-03-18 06:54:24.424 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.003063,
17-03-18 06:54:24.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.67847,  FlowCellCompartmentTemperature: 65.01036, AmbientTemperature: 18.66085
17-03-18 06:54:25.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.67951,  FlowCellCompartmentTemperature: 65.01301, AmbientTemperature: 18.66085
17-03-18 06:54:26.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.71002,  FlowCellCompartmentTemperature: 65.01167, AmbientTemperature: 18.66502
17-03-18 06:54:26.904 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:54:26.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:54:27.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.7192,  FlowCellCompartmentTemperature: 65.00639, AmbientTemperature: 18.66502
17-03-18 06:54:28.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.7192,  FlowCellCompartmentTemperature: 65.00639, AmbientTemperature: 18.66399
17-03-18 06:54:29.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.74057,  FlowCellCompartmentTemperature: 64.99979, AmbientTemperature: 18.65879
17-03-18 06:54:29.784 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.028963,
17-03-18 06:54:30.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.76195,  FlowCellCompartmentTemperature: 65.00111, AmbientTemperature: 18.65879
17-03-18 06:54:31.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.76195,  FlowCellCompartmentTemperature: 65.00111, AmbientTemperature: 18.66296
17-03-18 06:54:31.904 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:54:31.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:54:32.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.77313,  FlowCellCompartmentTemperature: 65.00506, AmbientTemperature: 18.66193
17-03-18 06:54:33.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.79451,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.66399
17-03-18 06:54:34.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.8077,  FlowCellCompartmentTemperature: 65.00244, AmbientTemperature: 18.66399
17-03-18 06:54:35.144 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.000345,
17-03-18 06:54:35.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.8077,  FlowCellCompartmentTemperature: 65.00244, AmbientTemperature: 18.66811
17-03-18 06:54:36.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.82601,  FlowCellCompartmentTemperature: 65.00773, AmbientTemperature: 18.67124
17-03-18 06:54:36.904 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:54:36.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:54:37.654 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 65, FlowCellHeatSinkTemperature: 19.82904,  FlowCellCompartmentTemperature: 65.00906, AmbientTemperature: 18.66811
17-03-18 06:54:38.654 -07 000000462 INF: FlowCellTempControl: Setting temperature polling rate to 00:00:05 ms
17-03-18 06:54:40.324 -07 000000430 INF: WaitCommand(30000) end
17-03-18 06:54:40.324 -07 000000610 INF: =================== Cycle #155, Flow Cell Temp 22° ===================
17-03-18 06:54:40.324 -07 000000610 INF: =================== Cycle #155, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 06:54:40.324 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 06:54:40.324 -07 000000430 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:54:40.334 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:54:40.334 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:54:40.334 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-18 06:54:40.334 -07 000000462 INF: FlowCellTempControl: Setting temperature polling rate to 00:00:01 ms
17-03-18 06:54:40.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 19.85751,  FlowCellCompartmentTemperature: 65.00111, AmbientTemperature: 18.66918
17-03-18 06:54:40.344 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:54:40.344 -07 000000610 INF: =================== Cycle #155, Flow Cell Temp 22° ===================
17-03-18 06:54:40.344 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:54:40.344 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:54:40.344 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:54:40.444 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:54:40.474 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:54:40.474 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:54:40.474 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:54:40.504 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.007176,
17-03-18 06:54:40.604 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:54:40.644 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:54:41.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 19.85751,  FlowCellCompartmentTemperature: 65.00111, AmbientTemperature: 18.66918
17-03-18 06:54:41.904 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:54:41.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2029, R2=2113, Total=4142. Warn if over 250 bubbles per interval.
17-03-18 06:54:42.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 19.85751,  FlowCellCompartmentTemperature: 65.00111, AmbientTemperature: 18.66918
17-03-18 06:54:43.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 19.85751,  FlowCellCompartmentTemperature: 65.00111, AmbientTemperature: 18.66918
17-03-18 06:54:43.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:43.804 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:54:44.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:44.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:54:44.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 20.94716,  FlowCellCompartmentTemperature: 52.66093, AmbientTemperature: 18.67953
17-03-18 06:54:44.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:44.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:44.704 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:54:44.704 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:54:44.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:54:44.864 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:54:44.864 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:54:44.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:54:45.024 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:54:45.024 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:54:45.024 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:54:45.154 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:54:45.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:45.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 21.71615,  FlowCellCompartmentTemperature: 47.79958, AmbientTemperature: 18.67953
17-03-18 06:54:45.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:45.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:45.644 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:54:45.644 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:54:45.864 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.970374,
17-03-18 06:54:46.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 21.71615,  FlowCellCompartmentTemperature: 47.79958, AmbientTemperature: 18.68056
17-03-18 06:54:46.864 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:54:46.864 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 06:54:46.864 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:54:46.884 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:54:46.884 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 06:54:46.884 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 06:54:46.904 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 06:54:46.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:54:47.034 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:54:47.054 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:54:47.054 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:54:47.104 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:54:47.124 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:54:47.124 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:54:47.224 -07 000000610 INF: =================== Cycle #155, Pumping Reagent USM (2) ===================
17-03-18 06:54:47.224 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:54:47.224 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:54:47.254 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:54:47.254 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:54:47.254 -07 000000610 INF: =================== Cycle #155, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 06:54:47.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.42232,  FlowCellCompartmentTemperature: 43.51699, AmbientTemperature: 18.68469
17-03-18 06:54:47.384 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:54:47.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:54:48.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.02327,  FlowCellCompartmentTemperature: 39.77298, AmbientTemperature: 18.69195
17-03-18 06:54:48.864 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:48.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:54:49.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:49.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.53884,  FlowCellCompartmentTemperature: 36.40783, AmbientTemperature: 18.69195
17-03-18 06:54:49.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:49.344 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:54:49.344 -07 000000610 INF: =================== Cycle #155, Pumping Reagent USM (2) ===================
17-03-18 06:54:49.474 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:54:49.504 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:54:49.504 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:54:49.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:54:49.664 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:54:49.664 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:54:49.664 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:54:49.794 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:54:49.824 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:50.254 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:50.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:50.284 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:54:50.284 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:54:50.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.53884,  FlowCellCompartmentTemperature: 36.40783, AmbientTemperature: 18.69405
17-03-18 06:54:51.304 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.986717,
17-03-18 06:54:51.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.97421,  FlowCellCompartmentTemperature: 33.33018, AmbientTemperature: 18.70333
17-03-18 06:54:51.504 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 06:54:51.504 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:54:51.504 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:54:51.524 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:54:51.524 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 06:54:51.524 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:54:51.674 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:54:51.694 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:54:51.694 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:54:51.744 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:54:51.764 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:54:51.764 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:54:51.864 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:54:51.864 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:54:51.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:54:51.894 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:54:51.894 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:54:51.894 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:54:51.904 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:54:51.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:54:52.024 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:54:52.064 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:54:52.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.3557,  FlowCellCompartmentTemperature: 30.53102, AmbientTemperature: 18.70333
17-03-18 06:54:52.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:52.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:52.964 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 06:54:52.964 -07 000000610 INF: =================== Cycle #155, Pumping Reagent PR2 (3) ===================
17-03-18 06:54:53.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:54:53.124 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:54:53.124 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:54:53.254 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:54:53.284 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:54:53.284 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:54:53.284 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:54:53.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.3557,  FlowCellCompartmentTemperature: 30.53102, AmbientTemperature: 18.71888
17-03-18 06:54:53.414 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:54:53.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:53.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:53.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:53.904 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:54:53.904 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:54:53.904 -07 000000437 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:54:53.904 -07 000000437 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:54:54.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.69926,  FlowCellCompartmentTemperature: 27.98894, AmbientTemperature: 18.72098
17-03-18 06:54:54.814 -07 000000455 INF: WaitCommand(10000) start
17-03-18 06:54:55.124 -07 000000437 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:54:55.124 -07 000000437 INF: LanePump: Xmit /1?\r
17-03-18 06:54:55.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.69926,  FlowCellCompartmentTemperature: 27.98894, AmbientTemperature: 18.72098
17-03-18 06:54:55.824 -07 000000437 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:54:55.824 -07 000000437 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:54:55.954 -07 000000437 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:54:55.994 -07 000000437 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:54:56.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.00242,  FlowCellCompartmentTemperature: 25.65418, AmbientTemperature: 18.74685
17-03-18 06:54:56.664 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.989471,
17-03-18 06:54:56.904 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:54:56.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:54:57.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.46963,  FlowCellCompartmentTemperature: 21.99981, AmbientTemperature: 18.74685
17-03-18 06:54:57.524 -07 000000437 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:57.554 -07 000000437 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:54:57.974 -07 000000437 INF: LanePump: Xmit /1Q\r
17-03-18 06:54:58.004 -07 000000437 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:54:58.004 -07 000000437 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:54:58.004 -07 000000437 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:54:58.004 -07 000000437 INF: ===================  ===================
17-03-18 06:54:58.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.46963,  FlowCellCompartmentTemperature: 21.99981, AmbientTemperature: 18.75927
17-03-18 06:54:59.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.64763,  FlowCellCompartmentTemperature: 21.62922, AmbientTemperature: 18.7655
17-03-18 06:55:00.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.5213,  FlowCellCompartmentTemperature: 22.55031, AmbientTemperature: 18.78407
17-03-18 06:55:01.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.28658,  FlowCellCompartmentTemperature: 21.95327, AmbientTemperature: 18.78407
17-03-18 06:55:01.904 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:55:01.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:55:02.024 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.994908,
17-03-18 06:55:02.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.28658,  FlowCellCompartmentTemperature: 21.95327, AmbientTemperature: 18.79546
17-03-18 06:55:03.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 25.08507,  FlowCellCompartmentTemperature: 22.23033, AmbientTemperature: 18.81717
17-03-18 06:55:04.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.85335,  FlowCellCompartmentTemperature: 22.04049, AmbientTemperature: 18.82753
17-03-18 06:55:04.824 -07 000000455 INF: WaitCommand(10000) end
17-03-18 06:55:04.824 -07 000000610 INF: =================== Cycle #155, Imaging ===================
17-03-18 06:55:04.824 -07 000000610 INF: Imaging Cycle 155: ScanTilesCommand Cycle 155 time start.
17-03-18 06:55:04.824 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 06:55:04.824 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:55:04.854 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:55:04.854 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 06:55:04.854 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 06:55:05.154 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:55:05.174 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:55:05.174 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:55:05.224 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:55:05.244 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:55:05.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:05.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:05.244 -07 000000480 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 06:55:05.244 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:05.244 -07 000000480 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 06:55:05.254 -07 000000479 INF: FPGA: Recv EXLED1ON 
17-03-18 06:55:05.254 -07 000000480 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:55:05.254 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 06:55:05.254 -07 000000430 INF: FPGA: Recv EXLED1ADCR 23083
17-03-18 06:55:05.264 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:05.264 -07 000000480 INF: RedLED: Using Red data: Photodiode ADC 23083 --> 7.4 mW (old method), or 204.6 mW (new method). Difference = 197.2 mW
17-03-18 06:55:05.264 -07 000000480 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 06:55:05.264 -07 000000455 INF: FPGA: Recv EXLED1OFF 
17-03-18 06:55:05.274 -07 000000480 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:05.274 -07 000000480 INF: RedLED: LED was on for 20 ms
17-03-18 06:55:05.274 -07 000000480 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 06:55:05.274 -07 000000480 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 06:55:05.274 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:05.274 -07 000000480 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 06:55:05.274 -07 000000455 INF: FPGA: Recv EXLED2ON 
17-03-18 06:55:05.284 -07 000000480 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:55:05.284 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:55:05.284 -07 000000461 INF: FPGA: Recv EXLED1ADCR 2099
17-03-18 06:55:05.294 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:05.294 -07 000000480 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-18 06:55:05.294 -07 000000480 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 06:55:05.294 -07 000000455 INF: FPGA: Recv EXLED2OFF 
17-03-18 06:55:05.304 -07 000000480 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:05.304 -07 000000480 INF: GreenLED: LED was on for 20 ms
17-03-18 06:55:05.304 -07 000000480 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 06:55:05.304 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:55:05.304 -07 000000447 INF: FPGA: Recv EMCUR 
17-03-18 06:55:05.314 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:55:05.314 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 06:55:05.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.85335,  FlowCellCompartmentTemperature: 22.04049, AmbientTemperature: 18.82753
17-03-18 06:55:05.814 -07 000000430 INF: FPGA: Recv EMOUT
17-03-18 06:55:05.814 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 06:55:05.814 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 06:55:05.814 -07 000000430 INF: FPGA: Recv EMCUR 
17-03-18 06:55:05.824 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:55:05.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:55:05.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.126471323030801. ------
17-03-18 06:55:05.824 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:55:05.824 -07 000000447 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17842 mm
17-03-18 06:55:05.824 -07 000000447 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:05.824 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:55:05.824 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:55:05.824 -07 000000455 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-18 06:55:05.834 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:55:05.834 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:05.834 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 38976, sync = True, waitForSettling = False)
17-03-18 06:55:05.834 -07 000000479 INF: Z Motor: Moving to -0.178421 mm, started at -0.126471 mm, distance = -51.95 um
17-03-18 06:55:05.834 -07 000000591 INF: FPGA: Recv YRDPOS 154379
17-03-18 06:55:05.844 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:55:05.844 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:05.844 -07 000000455 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:05.844 -07 000000455 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 06:55:05.844 -07 000000455 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:55:05.854 -07 000000479 INF: FPGA: Xmit ZDACW 38976\n [Z Motor]
17-03-18 06:55:05.854 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:55:05.864 -07 000000479 INF: FPGA: 'ZDACW 38976' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:55:05.864 -07 000000455 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:55:05.874 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:05.874 -07 000000461 INF: FPGA: Recv ZDACR 38976
17-03-18 06:55:05.884 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:55:05.884 -07 000000479 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 06:55:06.044 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:55:06.044 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 06:55:06.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.67229,  FlowCellCompartmentTemperature: 22.11883, AmbientTemperature: 18.84198
17-03-18 06:55:06.904 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:55:06.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:55:07.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.49095,  FlowCellCompartmentTemperature: 22.04774, AmbientTemperature: 18.85338
17-03-18 06:55:07.384 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.009895,
17-03-18 06:55:07.544 -07 000000576 INF: FPGA: Recv YMVTO 122701 24778
17-03-18 06:55:07.544 -07 000000455 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 06:55:07.544 -07 000000455 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:55:07.544 -07 000000455 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24778 steps (15.486 mm). Slippage = 0.019 mm (0.00%).
17-03-18 06:55:07.544 -07 000000455 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1707 ms, distance = 15.468 mm, average velocity = 9.061 mm/sec
17-03-18 06:55:08.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.33926,  FlowCellCompartmentTemperature: 22.06226, AmbientTemperature: 18.85338
17-03-18 06:55:09.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.33926,  FlowCellCompartmentTemperature: 22.06226, AmbientTemperature: 18.86783
17-03-18 06:55:10.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.19419,  FlowCellCompartmentTemperature: 22.06953, AmbientTemperature: 18.8699
17-03-18 06:55:10.394 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:10.394 -07 000000576 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:55:10.404 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:10.404 -07 000000455 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:10.434 -07 000000455 INF: Y Motor: After move to 59.912609, error = -0.003429, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:55:10.434 -07 000000455 INF: Y Motor: Position error after settling = -7 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 06:55:10.434 -07 000000455 INF: Y Motor: Moved to 59.9092 after 4603 ms
17-03-18 06:55:10.434 -07 000000447 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178421 mm (DAC = 38976)
17-03-18 06:55:10.434 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:10.444 -07 000000576 INF: FPGA: Recv ZSGSRD 37072
17-03-18 06:55:10.444 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:55:10.444 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:10.444 -07 000000455 INF: FPGA: Recv ZSGSRD 37066
17-03-18 06:55:10.454 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:10.454 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:10.454 -07 000000455 INF: FPGA: Recv ZSGSRD 37054
17-03-18 06:55:10.464 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:10.464 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:10.464 -07 000000455 INF: FPGA: Recv ZSGSRD 37065
17-03-18 06:55:10.474 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:10.474 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:10.474 -07 000000455 INF: FPGA: Recv ZSGSRD 37063
17-03-18 06:55:10.484 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:10.484 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:10.484 -07 000000461 INF: FPGA: Recv ZSGSRD 37064
17-03-18 06:55:10.494 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:10.494 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:10.494 -07 000000576 INF: FPGA: Recv ZSGSRD 37062
17-03-18 06:55:10.504 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:10.504 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:10.504 -07 000000461 INF: FPGA: Recv ZSGSRD 37059
17-03-18 06:55:10.514 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:10.514 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:10.514 -07 000000461 INF: FPGA: Recv ZSGSRD 37067
17-03-18 06:55:10.524 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:10.524 -07 000000447 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:10.524 -07 000000455 INF: FPGA: Recv ZSGSRD 37068
17-03-18 06:55:10.534 -07 000000447 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:10.534 -07 000000447 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:10.534 -07 000000576 INF: FPGA: Recv ZPIEZORD 33292
17-03-18 06:55:10.544 -07 000000447 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:10.544 -07 000000447 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -8.4 V.
17-03-18 06:55:10.544 -07 000000447 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37064 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37064 (-177.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 37054 (-177.5 uncal um), Max = 37072 (-177.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:55:10.544 -07 000000447 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37064, posNoise = 8, negNoise = 10
17-03-18 06:55:10.544 -07 000000447 INF: Z Motor: After move to -0.178421, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:10.544 -07 000000447 INF: Z Motor: Settle wait time = 4606 ms, measure time = 103 ms (allowed 150 ms), total time = 4709 ms
17-03-18 06:55:10.544 -07 000000447 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:55:10.594 -07 000000447 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4765 ms
17-03-18 06:55:10.594 -07 000000447 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:55:10.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:10.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:10.594 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:10.594 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:10.594 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:55:10.594 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:10.594 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:55:10.594 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:55:10.624 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 06:55:10.624 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:55:10.624 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:55:10.624 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:55:10.644 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:55:10.644 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 06:55:10.644 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:55:10.684 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:55:10.984 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:55:10.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:55:10.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:55:10.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-18 06:55:11.024 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:55:11.024 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 06:55:11.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 06:55:11.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 06:55:11.114 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:11.114 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:55:11.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:55:11.224 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:55:11.224 -07 000000480 INF: Image SNR check: start
17-03-18 06:55:11.224 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:55:11.234 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:55:11.234 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:55:11.234 -07 000000480 INF: Image SNR check: pass  [peak (Max-Min)=125.08]
17-03-18 06:55:11.234 -07 000000480 INF: Autofocus start
17-03-18 06:55:11.234 -07 000000480 INF: MeasureProfile start
17-03-18 06:55:11.244 -07 000000480 INF: MeasureProfile done
17-03-18 06:55:11.254 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:55:11.254 -07 000000480 INF: Autofocus finished
17-03-18 06:55:11.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 24.06538,  FlowCellCompartmentTemperature: 22.01435, AmbientTemperature: 18.87816
17-03-18 06:55:11.434 -07 000000479 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:55:11.434 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:55:11.434 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9091796875, Z-position -0.178430350833363. ----------
17-03-18 06:55:11.434 -07 000000610 INF: Cycle	155	Tile	1	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:55:11.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37491, sync = True, waitForSettling = True)
17-03-18 06:55:11.444 -07 000000610 INF: Z Motor: Moving to -0.171623 mm, started at -0.178430 mm, distance = 6.81 um
17-03-18 06:55:11.444 -07 000000610 INF: FPGA: Xmit ZDACW 37491\n [Z Motor]
17-03-18 06:55:11.444 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:55:11.454 -07 000000610 INF: FPGA: 'ZDACW 37491' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:55:11.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:11.454 -07 000000606 INF: FPGA: Recv ZDACR 37491
17-03-18 06:55:11.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:11.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:55:11.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:11.614 -07 000000461 INF: FPGA: Recv ZSGSRD 36008
17-03-18 06:55:11.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:11.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:11.624 -07 000000606 INF: FPGA: Recv ZSGSRD 36007
17-03-18 06:55:11.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:11.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:11.634 -07 000000626 INF: FPGA: Recv ZSGSRD 36006
17-03-18 06:55:11.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:11.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:11.644 -07 000000480 INF: FPGA: Recv ZSGSRD 36006
17-03-18 06:55:11.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:11.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:11.654 -07 000000479 INF: FPGA: Recv ZSGSRD 36002
17-03-18 06:55:11.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:11.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:11.664 -07 000000480 INF: FPGA: Recv ZSGSRD 36006
17-03-18 06:55:11.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:11.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:11.674 -07 000000479 INF: FPGA: Recv ZSGSRD 36007
17-03-18 06:55:11.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:11.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:11.684 -07 000000576 INF: FPGA: Recv ZSGSRD 36007
17-03-18 06:55:11.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:11.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:11.694 -07 000000461 INF: FPGA: Recv ZSGSRD 36008
17-03-18 06:55:11.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:11.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:11.704 -07 000000606 INF: FPGA: Recv ZSGSRD 36008
17-03-18 06:55:11.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:11.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:11.714 -07 000000461 INF: FPGA: Recv ZPIEZORD 31876
17-03-18 06:55:11.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:11.724 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.721 V. Piezo Error = -9.1 V.
17-03-18 06:55:11.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36006 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36007 (-170.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36002 (-170.7 uncal um), Max = 36008 (-170.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:55:11.724 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36006, posNoise = 2, negNoise = 4
17-03-18 06:55:11.724 -07 000000610 INF: Z Motor: After move to -0.171623, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:11.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 06:55:11.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:11.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:11.724 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:11.724 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:11.724 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:55:11.724 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:11.724 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:55:11.724 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:55:11.724 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:55:11.724 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:55:11.724 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:55:11.724 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:55:11.734 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:55:11.734 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:55:11.744 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:55:11.744 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:55:11.754 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 06:55:11.754 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:55:11.754 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:55:11.754 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:55:11.764 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:55:11.764 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-18 06:55:11.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37668 150\n [Camera]
17-03-18 06:55:11.904 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:55:11.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:55:11.964 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:55:12.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.93249,  FlowCellCompartmentTemperature: 22.0724, AmbientTemperature: 18.87816
17-03-18 06:55:12.434 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:55:12.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:55:12.434 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:12.444 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:12.444 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:55:12.444 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:55:12.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:55:12.444 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:12.444 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:12.444 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:55:12.634 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37668 855
17-03-18 06:55:12.754 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.014009,
17-03-18 06:55:12.774 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:55:12.844 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:55:12.844 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:55:12.844 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:12.844 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:55:12.844 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:55:12.844 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:12.844 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:12.844 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:55:12.844 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:12.854 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:55:13.004 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:55:13.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:55:13.004 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:13.004 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:13.004 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:55:13.004 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:55:13.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:55:13.014 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:13.014 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:13.014 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:55:13.194 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:55:13.194 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:55:13.194 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37668 150' command took 2 ms to send, 1418 ms to get response, and 1431 ms overall
17-03-18 06:55:13.204 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.171843
17-03-18 06:55:13.204 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17184 mm
17-03-18 06:55:13.204 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:13.204 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:55:13.204 -07 000000455 INF: Y Motor: Moving to 60.7426 mm, started at 59.9092 mm, delta = 0.8334 mm
17-03-18 06:55:13.204 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:13.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.93249,  FlowCellCompartmentTemperature: 22.0724, AmbientTemperature: 18.87816
17-03-18 06:55:13.404 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:55:13.404 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:55:13.404 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:13.414 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:55:13.414 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:55:13.414 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:13.414 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:55:13.414 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:55:13.414 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 06:55:13.424 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 06:55:13.434 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37539, sync = True, waitForSettling = False)
17-03-18 06:55:13.434 -07 000000480 INF: Z Motor: Moving to -0.171843 mm, started at -0.171634 mm, distance = -0.21 um
17-03-18 06:55:13.434 -07 000000480 INF: FPGA: Xmit ZDACW 37539\n [Z Motor]
17-03-18 06:55:13.434 -07 000000447 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:55:13.434 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:55:13.434 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 225 ms to get response, and 230 ms overall
17-03-18 06:55:13.434 -07 000000455 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:13.434 -07 000000455 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:55:13.434 -07 000000455 INF: Y Motor: Moving 1333 steps0
17-03-18 06:55:13.444 -07 000000480 INF: FPGA: 'ZDACW 37539' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:13.444 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:13.444 -07 000000447 INF: FPGA: Recv ZDACR 37539
17-03-18 06:55:13.454 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:55:13.454 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:13.454 -07 000000480 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 06:55:13.824 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:55:13.824 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 06:55:13.874 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:13.874 -07 000000480 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:55:13.884 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:55:13.884 -07 000000455 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:13.884 -07 000000455 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:55:13.884 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.833 mm, average velocity = 2.121 mm/sec
17-03-18 06:55:14.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.81795,  FlowCellCompartmentTemperature: 22.00852, AmbientTemperature: 18.88642
17-03-18 06:55:14.834 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:14.834 -07 000000430 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:55:14.844 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:14.844 -07 000000455 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:14.874 -07 000000455 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:55:14.874 -07 000000455 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:55:14.874 -07 000000455 INF: Y Motor: Moved to 60.7319 after 1672 ms (table move)
17-03-18 06:55:14.884 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171843 mm (DAC = 37539)
17-03-18 06:55:14.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:14.884 -07 000000591 INF: FPGA: Recv ZSGSRD 36045
17-03-18 06:55:14.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:55:14.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:14.894 -07 000000430 INF: FPGA: Recv ZSGSRD 36040
17-03-18 06:55:14.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:14.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:14.904 -07 000000480 INF: FPGA: Recv ZSGSRD 36033
17-03-18 06:55:14.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:14.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:14.914 -07 000000455 INF: FPGA: Recv ZSGSRD 36037
17-03-18 06:55:14.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:14.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:14.924 -07 000000480 INF: FPGA: Recv ZSGSRD 36038
17-03-18 06:55:14.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:14.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:14.934 -07 000000447 INF: FPGA: Recv ZSGSRD 36041
17-03-18 06:55:14.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:14.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:14.944 -07 000000591 INF: FPGA: Recv ZSGSRD 36044
17-03-18 06:55:14.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:14.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:14.954 -07 000000430 INF: FPGA: Recv ZSGSRD 36043
17-03-18 06:55:14.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:14.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:14.964 -07 000000591 INF: FPGA: Recv ZSGSRD 36045
17-03-18 06:55:14.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:14.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:14.974 -07 000000455 INF: FPGA: Recv ZSGSRD 36036
17-03-18 06:55:14.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:14.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:14.984 -07 000000430 INF: FPGA: Recv ZPIEZORD 31935
17-03-18 06:55:14.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:14.994 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -9.1 V.
17-03-18 06:55:14.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36040 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36040 (-171.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36033 (-170.9 uncal um), Max = 36045 (-171.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:55:14.994 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36040, posNoise = 5, negNoise = 7
17-03-18 06:55:14.994 -07 000000610 INF: Z Motor: After move to -0.171843, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:14.994 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 109 ms (allowed 150 ms), total time = 1560 ms
17-03-18 06:55:14.994 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 06:55:15.044 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1839 ms
17-03-18 06:55:15.044 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:55:15.044 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.1718519576002. ----------
17-03-18 06:55:15.044 -07 000000610 INF: Cycle	155	Tile	2	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:55:15.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37362, sync = True, waitForSettling = True)
17-03-18 06:55:15.044 -07 000000610 INF: Z Motor: Moving to -0.171032 mm, started at -0.171852 mm, distance = 0.82 um
17-03-18 06:55:15.044 -07 000000610 INF: FPGA: Xmit ZDACW 37362\n [Z Motor]
17-03-18 06:55:15.044 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:55:15.054 -07 000000610 INF: FPGA: 'ZDACW 37362' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:55:15.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:15.054 -07 000000430 INF: FPGA: Recv ZDACR 37362
17-03-18 06:55:15.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:15.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:55:15.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:15.214 -07 000000455 INF: FPGA: Recv ZSGSRD 35918
17-03-18 06:55:15.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:15.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:15.224 -07 000000606 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:55:15.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:15.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:15.234 -07 000000606 INF: FPGA: Recv ZSGSRD 35910
17-03-18 06:55:15.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:15.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:15.244 -07 000000455 INF: FPGA: Recv ZSGSRD 35917
17-03-18 06:55:15.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:15.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:15.254 -07 000000606 INF: FPGA: Recv ZSGSRD 35914
17-03-18 06:55:15.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:15.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:15.264 -07 000000455 INF: FPGA: Recv ZSGSRD 35915
17-03-18 06:55:15.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:15.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:15.274 -07 000000606 INF: FPGA: Recv ZSGSRD 35912
17-03-18 06:55:15.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:15.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:15.284 -07 000000455 INF: FPGA: Recv ZSGSRD 35912
17-03-18 06:55:15.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:15.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:15.294 -07 000000455 INF: FPGA: Recv ZSGSRD 35917
17-03-18 06:55:15.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:15.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:15.304 -07 000000606 INF: FPGA: Recv ZSGSRD 35908
17-03-18 06:55:15.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:15.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:15.314 -07 000000606 INF: FPGA: Recv ZPIEZORD 31792
17-03-18 06:55:15.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:15.324 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.1 V.
17-03-18 06:55:15.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35913 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35913 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35908 (-170.1 uncal um), Max = 35918 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:55:15.324 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35913, posNoise = 5, negNoise = 5
17-03-18 06:55:15.324 -07 000000610 INF: Z Motor: After move to -0.171032, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:15.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:55:15.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:15.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:15.324 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:15.324 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:15.324 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:55:15.324 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:15.324 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:55:15.324 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:55:15.324 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:55:15.324 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:55:15.324 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:55:15.324 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:55:15.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.70231,  FlowCellCompartmentTemperature: 22.09709, AmbientTemperature: 18.89054
17-03-18 06:55:15.334 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:55:15.334 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:55:15.334 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:55:15.334 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:55:15.344 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:55:15.344 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:55:15.344 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:55:15.344 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:55:15.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37539 150\n [Camera]
17-03-18 06:55:15.544 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:55:16.014 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:55:16.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:55:16.024 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:16.024 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:16.024 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 06:55:16.024 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:55:16.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:55:16.024 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:16.024 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:16.024 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 06:55:16.214 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37539 855
17-03-18 06:55:16.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.59041,  FlowCellCompartmentTemperature: 21.97946, AmbientTemperature: 18.89054
17-03-18 06:55:16.364 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:55:16.404 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:55:16.404 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:55:16.404 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:16.414 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 06:55:16.414 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:55:16.414 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:16.414 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:16.414 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:16.414 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:55:16.414 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:55:16.584 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:55:16.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:55:16.594 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:16.594 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:16.594 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 06:55:16.594 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:55:16.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:55:16.594 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:16.594 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:16.594 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 06:55:16.774 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-18 06:55:16.784 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:55:16.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37539 150' command took 2 ms to send, 1420 ms to get response, and 1431 ms overall
17-03-18 06:55:16.784 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.171809
17-03-18 06:55:16.784 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17181 mm
17-03-18 06:55:16.784 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:16.784 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:55:16.784 -07 000000606 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 06:55:16.784 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:16.994 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 06:55:16.994 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:55:16.994 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:16.994 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 06:55:16.994 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 06:55:16.994 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:17.004 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:17.004 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:17.004 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 06:55:17.004 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 06:55:17.014 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37532, sync = True, waitForSettling = False)
17-03-18 06:55:17.014 -07 000000430 INF: Z Motor: Moving to -0.171810 mm, started at -0.171036 mm, distance = -0.77 um
17-03-18 06:55:17.014 -07 000000430 INF: FPGA: Xmit ZDACW 37532\n [Z Motor]
17-03-18 06:55:17.014 -07 000000455 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:55:17.014 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:55:17.014 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:55:17.014 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 228 ms to get response, and 234 ms overall
17-03-18 06:55:17.014 -07 000000606 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:17.014 -07 000000606 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:55:17.014 -07 000000606 INF: Y Motor: Moving 1345 steps-23
17-03-18 06:55:17.024 -07 000000430 INF: FPGA: 'ZDACW 37532' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:55:17.024 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:55:17.024 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:55:17.034 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:17.034 -07 000000455 INF: FPGA: Recv ZDACR 37532
17-03-18 06:55:17.044 -07 000000430 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:55:17.044 -07 000000430 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 06:55:17.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.59041,  FlowCellCompartmentTemperature: 21.97946, AmbientTemperature: 18.89575
17-03-18 06:55:17.394 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 06:55:17.394 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 06:55:17.454 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:17.454 -07 000000480 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:55:17.464 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:55:17.464 -07 000000606 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:17.464 -07 000000606 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:55:17.464 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.841 mm, average velocity = 2.224 mm/sec
17-03-18 06:55:18.194 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.996267,
17-03-18 06:55:18.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.48134,  FlowCellCompartmentTemperature: 22.09999, AmbientTemperature: 18.9019
17-03-18 06:55:18.414 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:18.414 -07 000000480 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:55:18.424 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:18.424 -07 000000606 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:18.454 -07 000000606 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:55:18.454 -07 000000606 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:55:18.454 -07 000000606 INF: Y Motor: Moved to 61.5625 after 1669 ms (table move)
17-03-18 06:55:18.454 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171810 mm (DAC = 37532)
17-03-18 06:55:18.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.464 -07 000000480 INF: FPGA: Recv ZSGSRD 36034
17-03-18 06:55:18.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:55:18.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.464 -07 000000606 INF: FPGA: Recv ZSGSRD 36027
17-03-18 06:55:18.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.474 -07 000000455 INF: FPGA: Recv ZSGSRD 36042
17-03-18 06:55:18.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.484 -07 000000606 INF: FPGA: Recv ZSGSRD 36041
17-03-18 06:55:18.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.494 -07 000000455 INF: FPGA: Recv ZSGSRD 36028
17-03-18 06:55:18.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.504 -07 000000480 INF: FPGA: Recv ZSGSRD 36037
17-03-18 06:55:18.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.514 -07 000000606 INF: FPGA: Recv ZSGSRD 36033
17-03-18 06:55:18.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.524 -07 000000455 INF: FPGA: Recv ZSGSRD 36035
17-03-18 06:55:18.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.534 -07 000000606 INF: FPGA: Recv ZSGSRD 36033
17-03-18 06:55:18.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.544 -07 000000479 INF: FPGA: Recv ZSGSRD 36027
17-03-18 06:55:18.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:18.554 -07 000000576 INF: FPGA: Recv ZPIEZORD 31991
17-03-18 06:55:18.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.564 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -8.9 V.
17-03-18 06:55:18.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36034 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36034 (-170.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36027 (-170.9 uncal um), Max = 36042 (-171.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:55:18.564 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36034, posNoise = 8, negNoise = 7
17-03-18 06:55:18.564 -07 000000610 INF: Z Motor: After move to -0.171810, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:18.564 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 104 ms (allowed 150 ms), total time = 1547 ms
17-03-18 06:55:18.564 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:55:18.614 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1827 ms
17-03-18 06:55:18.614 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:55:18.614 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.171813412327349. ----------
17-03-18 06:55:18.614 -07 000000610 INF: Cycle	155	Tile	3	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:55:18.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37355, sync = True, waitForSettling = True)
17-03-18 06:55:18.614 -07 000000610 INF: Z Motor: Moving to -0.171000 mm, started at -0.171813 mm, distance = 0.81 um
17-03-18 06:55:18.614 -07 000000610 INF: FPGA: Xmit ZDACW 37355\n [Z Motor]
17-03-18 06:55:18.614 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:55:18.624 -07 000000610 INF: FPGA: 'ZDACW 37355' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:55:18.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:18.624 -07 000000455 INF: FPGA: Recv ZDACR 37355
17-03-18 06:55:18.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:55:18.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.784 -07 000000447 INF: FPGA: Recv ZSGSRD 35916
17-03-18 06:55:18.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:18.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.794 -07 000000437 INF: FPGA: Recv ZSGSRD 35908
17-03-18 06:55:18.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.804 -07 000000455 INF: FPGA: Recv ZSGSRD 35913
17-03-18 06:55:18.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.814 -07 000000447 INF: FPGA: Recv ZSGSRD 35906
17-03-18 06:55:18.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.824 -07 000000437 INF: FPGA: Recv ZSGSRD 35902
17-03-18 06:55:18.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.834 -07 000000455 INF: FPGA: Recv ZSGSRD 35912
17-03-18 06:55:18.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.844 -07 000000447 INF: FPGA: Recv ZSGSRD 35908
17-03-18 06:55:18.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.854 -07 000000437 INF: FPGA: Recv ZSGSRD 35911
17-03-18 06:55:18.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.864 -07 000000479 INF: FPGA: Recv ZSGSRD 35907
17-03-18 06:55:18.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:18.874 -07 000000585 INF: FPGA: Recv ZSGSRD 35907
17-03-18 06:55:18.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:18.884 -07 000000585 INF: FPGA: Recv ZPIEZORD 31812
17-03-18 06:55:18.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:18.894 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -9.0 V.
17-03-18 06:55:18.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35909 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35908 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35902 (-170.1 uncal um), Max = 35916 (-170.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:55:18.894 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35909, posNoise = 7, negNoise = 7
17-03-18 06:55:18.894 -07 000000610 INF: Z Motor: After move to -0.171000, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:18.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:55:18.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:18.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:18.894 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:18.894 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:18.894 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:55:18.894 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:18.894 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:55:18.894 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:55:18.894 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:55:18.894 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:55:18.894 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:55:18.894 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:55:18.904 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:55:18.904 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:55:18.904 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:55:18.904 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:55:18.914 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:55:18.914 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:55:18.914 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:55:18.914 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:55:18.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37532 150\n [Camera]
17-03-18 06:55:19.114 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:55:19.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.37898,  FlowCellCompartmentTemperature: 21.9751, AmbientTemperature: 18.90397
17-03-18 06:55:19.584 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:55:19.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:55:19.584 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:19.584 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:19.584 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 06:55:19.584 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:55:19.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:55:19.584 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:19.584 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:19.584 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 06:55:19.774 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37532 855
17-03-18 06:55:19.924 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:55:19.964 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:55:19.964 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:55:19.964 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:19.964 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:55:19.964 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:55:19.964 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:19.964 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:19.964 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:19.964 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:55:19.974 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 06:55:20.154 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:55:20.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:55:20.154 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:55:20.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:55:20.154 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:20.154 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:20.154 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 06:55:20.154 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:20.154 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:20.154 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 06:55:20.334 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.26774,  FlowCellCompartmentTemperature: 22.11013, AmbientTemperature: 18.90397
17-03-18 06:55:20.364 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:55:20.364 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:55:20.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37532 150' command took 2 ms to send, 1449 ms to get response, and 1456 ms overall
17-03-18 06:55:20.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:55:20.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.171010385809629. ------
17-03-18 06:55:20.374 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:55:20.374 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17726 mm
17-03-18 06:55:20.374 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:20.374 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:55:20.374 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:55:20.374 -07 000000585 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 06:55:20.374 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38723, sync = True, waitForSettling = False)
17-03-18 06:55:20.374 -07 000000447 INF: Z Motor: Moving to -0.177263 mm, started at -0.171010 mm, distance = -6.25 um
17-03-18 06:55:20.384 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:55:20.384 -07 000000447 INF: FPGA: Xmit ZDACW 38723\n [Z Motor]
17-03-18 06:55:20.384 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:55:20.394 -07 000000447 INF: FPGA: 'ZDACW 38723' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:20.394 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:20.394 -07 000000626 INF: FPGA: Recv ZDACR 38723
17-03-18 06:55:20.404 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:20.404 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:20.404 -07 000000447 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 06:55:20.404 -07 000000576 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:55:20.414 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:55:20.414 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 06:55:20.414 -07 000000585 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:20.414 -07 000000585 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:55:20.414 -07 000000585 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:55:20.424 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:55:20.544 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 06:55:20.544 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:55:20.544 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:20.544 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:55:20.544 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:55:20.544 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:20.544 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:20.544 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:20.544 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:55:20.554 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:55:20.614 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:55:20.614 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 234 ms overall
17-03-18 06:55:20.794 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:55:20.794 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-18 06:55:20.854 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:20.854 -07 000000455 INF: FPGA: Recv YRDPOS 127783
17-03-18 06:55:20.864 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:55:20.864 -07 000000585 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:20.864 -07 000000585 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:55:20.864 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.165 mm/sec
17-03-18 06:55:21.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.26774,  FlowCellCompartmentTemperature: 22.11013, AmbientTemperature: 18.90711
17-03-18 06:55:21.814 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:21.814 -07 000000591 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:55:21.824 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:21.824 -07 000000585 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:21.854 -07 000000585 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:55:21.854 -07 000000585 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:55:21.854 -07 000000585 INF: Y Motor: Moved to 62.3945 after 1475 ms (table move)
17-03-18 06:55:21.854 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177263 mm (DAC = 38723)
17-03-18 06:55:21.854 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:21.864 -07 000000626 INF: FPGA: Recv ZSGSRD 36880
17-03-18 06:55:21.864 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:55:21.864 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:21.864 -07 000000585 INF: FPGA: Recv ZSGSRD 36888
17-03-18 06:55:21.874 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:55:21.874 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:21.874 -07 000000585 INF: FPGA: Recv ZSGSRD 36874
17-03-18 06:55:21.884 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:21.884 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:21.884 -07 000000585 INF: FPGA: Recv ZSGSRD 36878
17-03-18 06:55:21.894 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:21.894 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:21.894 -07 000000585 INF: FPGA: Recv ZSGSRD 36880
17-03-18 06:55:21.904 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:21.904 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:21.904 -07 000000591 INF: FPGA: Recv ZSGSRD 36887
17-03-18 06:55:21.904 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:55:21.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:55:21.914 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:21.914 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:21.914 -07 000000479 INF: FPGA: Recv ZSGSRD 36887
17-03-18 06:55:21.924 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:21.924 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:21.924 -07 000000437 INF: FPGA: Recv ZSGSRD 36884
17-03-18 06:55:21.934 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:21.934 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:21.934 -07 000000430 INF: FPGA: Recv ZSGSRD 36884
17-03-18 06:55:21.944 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:21.944 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:21.944 -07 000000430 INF: FPGA: Recv ZSGSRD 36886
17-03-18 06:55:21.954 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:21.974 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:21.974 -07 000000455 INF: FPGA: Recv ZPIEZORD 33110
17-03-18 06:55:21.984 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:55:21.984 -07 000000606 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.909 V. Piezo Error = -8.4 V.
17-03-18 06:55:21.984 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36883 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36884 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36874 (-176.3 uncal um), Max = 36888 (-176.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:55:21.984 -07 000000606 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36883, posNoise = 5, negNoise = 9
17-03-18 06:55:21.984 -07 000000606 INF: Z Motor: After move to -0.177263, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:21.984 -07 000000606 INF: Z Motor: Settle wait time = 1478 ms, measure time = 122 ms (allowed 150 ms), total time = 1600 ms
17-03-18 06:55:21.984 -07 000000606 INF: Z Motor: Waiting extra 28 ms after reading position to reach expected total of 150 ms
17-03-18 06:55:22.014 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 06:55:22.014 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:55:22.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:22.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:22.014 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:22.024 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:22.024 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:55:22.024 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:22.024 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:55:22.024 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:55:22.024 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:55:22.024 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:55:22.034 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:55:22.034 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:55:22.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:55:22.084 -07 000000479 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:55:22.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.1661,  FlowCellCompartmentTemperature: 21.94309, AmbientTemperature: 18.90504
17-03-18 06:55:22.384 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:55:22.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:55:22.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:55:22.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2603919736, 0x0, 559484976) start.
17-03-18 06:55:22.424 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:55:22.424 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 06:55:22.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 06:55:22.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2603919736, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 06:55:22.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:22.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:55:22.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 06:55:22.624 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:55:22.624 -07 000000626 INF: Autofocus start
17-03-18 06:55:22.624 -07 000000626 INF: MeasureProfile start
17-03-18 06:55:22.624 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:55:22.634 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:55:22.634 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:55:22.634 -07 000000626 INF: MeasureProfile done
17-03-18 06:55:22.634 -07 000000626 INF: X=48  Z correction [um]=0.1739867
17-03-18 06:55:22.634 -07 000000626 INF: Autofocus finished
17-03-18 06:55:22.834 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:55:22.834 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:55:22.834 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.177267568435704. ----------
17-03-18 06:55:22.834 -07 000000610 INF: Cycle	155	Tile	4	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:55:22.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37273, sync = True, waitForSettling = True)
17-03-18 06:55:22.844 -07 000000610 INF: Z Motor: Moving to -0.170625 mm, started at -0.177268 mm, distance = 6.64 um
17-03-18 06:55:22.844 -07 000000610 INF: FPGA: Xmit ZDACW 37273\n [Z Motor]
17-03-18 06:55:22.844 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:55:22.854 -07 000000610 INF: FPGA: 'ZDACW 37273' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:22.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:22.854 -07 000000626 INF: FPGA: Recv ZDACR 37273
17-03-18 06:55:22.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:22.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:55:23.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:23.024 -07 000000626 INF: FPGA: Recv ZSGSRD 35847
17-03-18 06:55:23.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:55:23.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:23.034 -07 000000626 INF: FPGA: Recv ZSGSRD 35854
17-03-18 06:55:23.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:23.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:23.044 -07 000000626 INF: FPGA: Recv ZSGSRD 35852
17-03-18 06:55:23.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:23.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:23.054 -07 000000480 INF: FPGA: Recv ZSGSRD 35850
17-03-18 06:55:23.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:23.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:23.064 -07 000000591 INF: FPGA: Recv ZSGSRD 35847
17-03-18 06:55:23.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:23.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:23.074 -07 000000626 INF: FPGA: Recv ZSGSRD 35852
17-03-18 06:55:23.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:23.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:23.084 -07 000000626 INF: FPGA: Recv ZSGSRD 35860
17-03-18 06:55:23.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:23.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:23.094 -07 000000480 INF: FPGA: Recv ZSGSRD 35850
17-03-18 06:55:23.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:23.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:23.104 -07 000000591 INF: FPGA: Recv ZSGSRD 35847
17-03-18 06:55:23.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:23.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:23.114 -07 000000626 INF: FPGA: Recv ZSGSRD 35852
17-03-18 06:55:23.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:23.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:23.124 -07 000000480 INF: FPGA: Recv ZPIEZORD 31705
17-03-18 06:55:23.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:23.134 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -9.1 V.
17-03-18 06:55:23.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35851 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35851 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35847 (-169.7 uncal um), Max = 35860 (-169.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:55:23.134 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35851, posNoise = 9, negNoise = 4
17-03-18 06:55:23.134 -07 000000610 INF: Z Motor: After move to -0.170625, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:23.134 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 06:55:23.134 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:23.134 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:23.134 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:23.134 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:55:23.134 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:23.134 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:23.134 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:55:23.134 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:55:23.134 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:55:23.134 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:55:23.134 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:55:23.134 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:55:23.134 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:55:23.134 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:55:23.144 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:55:23.144 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:55:23.154 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 06:55:23.154 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:55:23.154 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:55:23.154 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:55:23.154 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37450 150\n [Camera]
17-03-18 06:55:23.354 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:55:23.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.06244,  FlowCellCompartmentTemperature: 22.11013, AmbientTemperature: 18.91326
17-03-18 06:55:23.644 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.994908,
17-03-18 06:55:23.824 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:55:23.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:55:23.824 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:23.824 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:23.824 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 06:55:23.824 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:55:23.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:55:23.834 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:23.834 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:23.834 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 06:55:24.014 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37450 855
17-03-18 06:55:24.164 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:55:24.204 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:55:24.204 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:55:24.204 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:24.204 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:55:24.204 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:55:24.204 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:24.214 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:55:24.214 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:55:24.214 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:55:24.224 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:55:24.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 23.06244,  FlowCellCompartmentTemperature: 22.11013, AmbientTemperature: 18.91326
17-03-18 06:55:24.394 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:55:24.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:55:24.394 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:24.394 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:24.394 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-18 06:55:24.404 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:55:24.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:55:24.404 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:24.404 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:24.404 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-18 06:55:24.584 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:55:24.584 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:55:24.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37450 150' command took 2 ms to send, 1427 ms to get response, and 1431 ms overall
17-03-18 06:55:24.584 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171114
17-03-18 06:55:24.594 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17111 mm
17-03-18 06:55:24.594 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:24.594 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:55:24.594 -07 000000591 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 06:55:24.594 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:24.594 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 37380, sync = True, waitForSettling = False)
17-03-18 06:55:24.594 -07 000000447 INF: Z Motor: Moving to -0.171115 mm, started at -0.170638 mm, distance = -0.48 um
17-03-18 06:55:24.594 -07 000000455 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:55:24.604 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:55:24.604 -07 000000591 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:24.604 -07 000000591 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:55:24.604 -07 000000591 INF: Y Motor: Moving 1341 steps-18
17-03-18 06:55:24.604 -07 000000447 INF: FPGA: Xmit ZDACW 37380\n [Z Motor]
17-03-18 06:55:24.604 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:55:24.614 -07 000000447 INF: FPGA: 'ZDACW 37380' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:55:24.614 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:24.614 -07 000000480 INF: FPGA: Recv ZDACR 37380
17-03-18 06:55:24.624 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:55:24.624 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:24.624 -07 000000447 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 06:55:24.794 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:55:24.804 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:55:24.804 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:24.804 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 06:55:24.804 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:55:24.804 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:24.804 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:24.804 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:55:24.804 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 06:55:24.814 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 06:55:25.004 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:55:25.004 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-18 06:55:25.054 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:25.054 -07 000000585 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:55:25.064 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:55:25.064 -07 000000591 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:25.064 -07 000000591 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:55:25.064 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.095 mm/sec
17-03-18 06:55:25.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.95082,  FlowCellCompartmentTemperature: 21.94019, AmbientTemperature: 18.91434
17-03-18 06:55:26.014 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:26.014 -07 000000479 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:55:26.024 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:26.024 -07 000000591 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:26.054 -07 000000591 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:55:26.054 -07 000000591 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:55:26.054 -07 000000591 INF: Y Motor: Moved to 63.2227 after 1462 ms (table move)
17-03-18 06:55:26.054 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171115 mm (DAC = 37380)
17-03-18 06:55:26.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.064 -07 000000576 INF: FPGA: Recv ZSGSRD 35931
17-03-18 06:55:26.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:55:26.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.094 -07 000000479 INF: FPGA: Recv ZSGSRD 35926
17-03-18 06:55:26.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:55:26.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.104 -07 000000585 INF: FPGA: Recv ZSGSRD 35926
17-03-18 06:55:26.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.124 -07 000000461 INF: FPGA: Recv ZSGSRD 35928
17-03-18 06:55:26.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:55:26.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.134 -07 000000479 INF: FPGA: Recv ZSGSRD 35922
17-03-18 06:55:26.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.144 -07 000000585 INF: FPGA: Recv ZSGSRD 35931
17-03-18 06:55:26.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.154 -07 000000585 INF: FPGA: Recv ZSGSRD 35931
17-03-18 06:55:26.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.164 -07 000000585 INF: FPGA: Recv ZSGSRD 35926
17-03-18 06:55:26.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.174 -07 000000585 INF: FPGA: Recv ZSGSRD 35932
17-03-18 06:55:26.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.184 -07 000000585 INF: FPGA: Recv ZSGSRD 35922
17-03-18 06:55:26.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:26.194 -07 000000585 INF: FPGA: Recv ZPIEZORD 31822
17-03-18 06:55:26.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.204 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -9.1 V.
17-03-18 06:55:26.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35928 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35927 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35922 (-170.2 uncal um), Max = 35932 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:55:26.204 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35928, posNoise = 4, negNoise = 6
17-03-18 06:55:26.204 -07 000000610 INF: Z Motor: After move to -0.171115, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:26.204 -07 000000610 INF: Z Motor: Settle wait time = 1464 ms, measure time = 143 ms (allowed 150 ms), total time = 1607 ms
17-03-18 06:55:26.204 -07 000000610 INF: Z Motor: Waiting extra 7 ms after reading position to reach expected total of 150 ms
17-03-18 06:55:26.214 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 06:55:26.214 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:55:26.214 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.171132445840323. ----------
17-03-18 06:55:26.214 -07 000000610 INF: Cycle	155	Tile	5	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:55:26.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37203, sync = True, waitForSettling = True)
17-03-18 06:55:26.214 -07 000000610 INF: Z Motor: Moving to -0.170304 mm, started at -0.171132 mm, distance = 0.83 um
17-03-18 06:55:26.214 -07 000000610 INF: FPGA: Xmit ZDACW 37203\n [Z Motor]
17-03-18 06:55:26.214 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:55:26.224 -07 000000610 INF: FPGA: 'ZDACW 37203' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:55:26.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:26.224 -07 000000479 INF: FPGA: Recv ZDACR 37203
17-03-18 06:55:26.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:55:26.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.8587,  FlowCellCompartmentTemperature: 22.1029, AmbientTemperature: 18.91434
17-03-18 06:55:26.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.384 -07 000000479 INF: FPGA: Recv ZSGSRD 35798
17-03-18 06:55:26.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:26.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.394 -07 000000461 INF: FPGA: Recv ZSGSRD 35809
17-03-18 06:55:26.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.404 -07 000000461 INF: FPGA: Recv ZSGSRD 35803
17-03-18 06:55:26.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.414 -07 000000585 INF: FPGA: Recv ZSGSRD 35796
17-03-18 06:55:26.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.424 -07 000000585 INF: FPGA: Recv ZSGSRD 35800
17-03-18 06:55:26.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.434 -07 000000585 INF: FPGA: Recv ZSGSRD 35803
17-03-18 06:55:26.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.444 -07 000000479 INF: FPGA: Recv ZSGSRD 35803
17-03-18 06:55:26.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.454 -07 000000461 INF: FPGA: Recv ZSGSRD 35805
17-03-18 06:55:26.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.464 -07 000000585 INF: FPGA: Recv ZSGSRD 35799
17-03-18 06:55:26.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:26.474 -07 000000447 INF: FPGA: Recv ZSGSRD 35810
17-03-18 06:55:26.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:26.484 -07 000000479 INF: FPGA: Recv ZPIEZORD 31663
17-03-18 06:55:26.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:26.494 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -9.1 V.
17-03-18 06:55:26.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35803 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35803 (-169.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35796 (-169.4 uncal um), Max = 35810 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:55:26.494 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35803, posNoise = 7, negNoise = 7
17-03-18 06:55:26.494 -07 000000610 INF: Z Motor: After move to -0.170304, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:26.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:55:26.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:26.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:26.494 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:55:26.494 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:26.494 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:26.494 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:55:26.494 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:55:26.494 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:26.494 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:55:26.494 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:55:26.494 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:55:26.494 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:55:26.504 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:55:26.504 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:55:26.504 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 06:55:26.504 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:55:26.514 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:55:26.514 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:55:26.514 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:55:26.514 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:55:26.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37380 150\n [Camera]
17-03-18 06:55:26.714 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:55:26.904 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:55:26.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:55:27.184 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:55:27.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:55:27.184 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:27.184 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:27.184 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) start.
17-03-18 06:55:27.184 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:55:27.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:55:27.184 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:27.184 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:27.184 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) start.
17-03-18 06:55:27.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.75567,  FlowCellCompartmentTemperature: 21.92417, AmbientTemperature: 18.91434
17-03-18 06:55:27.374 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37380 855
17-03-18 06:55:27.524 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:55:27.564 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:55:27.564 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:55:27.564 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:27.574 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:55:27.574 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:55:27.574 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:27.574 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:27.574 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:55:27.574 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:27.584 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:55:27.754 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:55:27.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:55:27.754 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:27.754 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:27.754 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) start.
17-03-18 06:55:27.754 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:55:27.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:55:27.754 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:27.754 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:27.754 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 3122434152, 0x0, 418435064) start.
17-03-18 06:55:27.944 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:55:27.944 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:55:27.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37380 150' command took 2 ms to send, 1426 ms to get response, and 1431 ms overall
17-03-18 06:55:27.944 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.170582
17-03-18 06:55:27.944 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17058 mm
17-03-18 06:55:27.944 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:27.954 -07 000000479 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:55:27.954 -07 000000479 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 06:55:27.954 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37264, sync = True, waitForSettling = False)
17-03-18 06:55:27.954 -07 000000606 INF: Z Motor: Moving to -0.170584 mm, started at -0.170329 mm, distance = -0.25 um
17-03-18 06:55:27.954 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:27.954 -07 000000585 INF: FPGA: Recv YRDPOS 129480
17-03-18 06:55:27.964 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:27.964 -07 000000479 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:27.964 -07 000000606 INF: FPGA: Xmit ZDACW 37264\n [Z Motor]
17-03-18 06:55:27.964 -07 000000479 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:55:27.964 -07 000000479 INF: Y Motor: Moving 1344 steps-20
17-03-18 06:55:27.964 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:55:27.974 -07 000000606 INF: FPGA: 'ZDACW 37264' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:55:27.974 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:27.974 -07 000000591 INF: FPGA: Recv ZDACR 37264
17-03-18 06:55:27.984 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:27.984 -07 000000479 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:55:27.984 -07 000000606 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 06:55:28.164 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 06:55:28.164 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:55:28.164 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:28.164 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 3122434152, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:55:28.164 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:55:28.164 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:28.164 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:28.164 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 06:55:28.164 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:28.174 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:55:28.354 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:55:28.354 -07 000000479 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:55:28.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.75567,  FlowCellCompartmentTemperature: 21.92417, AmbientTemperature: 18.9174
17-03-18 06:55:28.414 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:28.414 -07 000000585 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:55:28.424 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:55:28.424 -07 000000479 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:28.424 -07 000000479 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 06:55:28.424 -07 000000479 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 06:55:29.114 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.996267,
17-03-18 06:55:29.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.66042,  FlowCellCompartmentTemperature: 22.11592, AmbientTemperature: 18.9195
17-03-18 06:55:29.374 -07 000000479 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:29.374 -07 000000480 INF: FPGA: Recv YRDPOS 131186
17-03-18 06:55:29.384 -07 000000479 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:29.384 -07 000000479 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:29.414 -07 000000479 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:55:29.414 -07 000000479 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:55:29.414 -07 000000479 INF: Y Motor: Moved to 64.0557 after 1460 ms (table move)
17-03-18 06:55:29.414 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170584 mm (DAC = 37264)
17-03-18 06:55:29.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.414 -07 000000479 INF: FPGA: Recv ZSGSRD 35841
17-03-18 06:55:29.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:55:29.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.424 -07 000000479 INF: FPGA: Recv ZSGSRD 35846
17-03-18 06:55:29.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.434 -07 000000479 INF: FPGA: Recv ZSGSRD 35840
17-03-18 06:55:29.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.444 -07 000000479 INF: FPGA: Recv ZSGSRD 35842
17-03-18 06:55:29.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.454 -07 000000479 INF: FPGA: Recv ZSGSRD 35845
17-03-18 06:55:29.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.464 -07 000000480 INF: FPGA: Recv ZSGSRD 35840
17-03-18 06:55:29.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.474 -07 000000479 INF: FPGA: Recv ZSGSRD 35848
17-03-18 06:55:29.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.484 -07 000000479 INF: FPGA: Recv ZSGSRD 35845
17-03-18 06:55:29.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:55:29.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.494 -07 000000480 INF: FPGA: Recv ZSGSRD 35847
17-03-18 06:55:29.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.504 -07 000000479 INF: FPGA: Recv ZSGSRD 35845
17-03-18 06:55:29.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:29.514 -07 000000480 INF: FPGA: Recv ZPIEZORD 31708
17-03-18 06:55:29.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.524 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.1 V.
17-03-18 06:55:29.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35844 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35845 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35840 (-169.7 uncal um), Max = 35848 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:55:29.524 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35844, posNoise = 4, negNoise = 4
17-03-18 06:55:29.524 -07 000000610 INF: Z Motor: After move to -0.170584, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:29.524 -07 000000610 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-18 06:55:29.524 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:55:29.574 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 06:55:29.574 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:55:29.574 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.170592812020415. ----------
17-03-18 06:55:29.574 -07 000000610 INF: Cycle	155	Tile	6	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:55:29.574 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37087, sync = True, waitForSettling = True)
17-03-18 06:55:29.574 -07 000000610 INF: Z Motor: Moving to -0.169773 mm, started at -0.170593 mm, distance = 0.82 um
17-03-18 06:55:29.574 -07 000000610 INF: FPGA: Xmit ZDACW 37087\n [Z Motor]
17-03-18 06:55:29.574 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:55:29.584 -07 000000610 INF: FPGA: 'ZDACW 37087' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:55:29.584 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:29.584 -07 000000626 INF: FPGA: Recv ZDACR 37087
17-03-18 06:55:29.594 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.594 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:55:29.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.744 -07 000000480 INF: FPGA: Recv ZSGSRD 35719
17-03-18 06:55:29.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:29.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.754 -07 000000479 INF: FPGA: Recv ZSGSRD 35717
17-03-18 06:55:29.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.764 -07 000000576 INF: FPGA: Recv ZSGSRD 35708
17-03-18 06:55:29.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.774 -07 000000626 INF: FPGA: Recv ZSGSRD 35715
17-03-18 06:55:29.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.784 -07 000000576 INF: FPGA: Recv ZSGSRD 35721
17-03-18 06:55:29.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.794 -07 000000626 INF: FPGA: Recv ZSGSRD 35723
17-03-18 06:55:29.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.804 -07 000000479 INF: FPGA: Recv ZSGSRD 35713
17-03-18 06:55:29.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.814 -07 000000480 INF: FPGA: Recv ZSGSRD 35714
17-03-18 06:55:29.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.824 -07 000000480 INF: FPGA: Recv ZSGSRD 35722
17-03-18 06:55:29.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:29.834 -07 000000479 INF: FPGA: Recv ZSGSRD 35717
17-03-18 06:55:29.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:29.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:29.854 -07 000000626 INF: FPGA: Recv ZPIEZORD 31550
17-03-18 06:55:29.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:55:29.864 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -9.2 V.
17-03-18 06:55:29.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35717 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35717 (-168.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35708 (-168.8 uncal um), Max = 35723 (-168.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:55:29.864 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35717, posNoise = 6, negNoise = 9
17-03-18 06:55:29.864 -07 000000610 INF: Z Motor: After move to -0.169773, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:29.864 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-18 06:55:29.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:29.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:29.864 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:29.864 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:55:29.864 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:29.864 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:55:29.864 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:55:29.864 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:29.864 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:55:29.864 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:55:29.864 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:55:29.864 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:55:29.874 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:55:29.874 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:55:29.874 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:55:29.874 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:55:29.884 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:55:29.884 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:55:29.884 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:55:29.884 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:55:29.894 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37264 150\n [Camera]
17-03-18 06:55:30.094 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:55:30.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.56404,  FlowCellCompartmentTemperature: 21.93146, AmbientTemperature: 18.92256
17-03-18 06:55:30.564 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:55:30.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:55:30.564 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:30.564 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:55:30.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:55:30.564 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:30.564 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:30.564 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 06:55:30.574 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:30.574 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:55:30.754 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37264 855
17-03-18 06:55:30.904 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1006
17-03-18 06:55:30.944 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:55:30.944 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 06:55:30.944 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:30.944 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:55:30.944 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:55:30.944 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:30.944 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:30.944 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:55:30.944 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:30.954 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:55:31.124 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:55:31.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:55:31.134 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:31.134 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:55:31.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:55:31.134 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:31.134 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:31.134 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:55:31.134 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:31.134 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:55:31.324 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:55:31.324 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:55:31.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37264 150' command took 2 ms to send, 1421 ms to get response, and 1430 ms overall
17-03-18 06:55:31.324 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170120
17-03-18 06:55:31.324 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17012 mm
17-03-18 06:55:31.324 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:31.324 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:55:31.324 -07 000000455 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 06:55:31.334 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:31.334 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37163, sync = True, waitForSettling = False)
17-03-18 06:55:31.334 -07 000000430 INF: Z Motor: Moving to -0.170121 mm, started at -0.169777 mm, distance = -0.34 um
17-03-18 06:55:31.334 -07 000000585 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:55:31.344 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:31.344 -07 000000455 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:31.344 -07 000000430 INF: FPGA: Xmit ZDACW 37163\n [Z Motor]
17-03-18 06:55:31.344 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:55:31.344 -07 000000455 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:55:31.344 -07 000000455 INF: Y Motor: Moving 1338 steps-14
17-03-18 06:55:31.354 -07 000000430 INF: FPGA: 'ZDACW 37163' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:55:31.354 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:31.354 -07 000000576 INF: FPGA: Recv ZDACR 37163
17-03-18 06:55:31.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.46565,  FlowCellCompartmentTemperature: 22.10722, AmbientTemperature: 18.92256
17-03-18 06:55:31.364 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:31.364 -07 000000430 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 06:55:31.364 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:55:31.514 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:55:31.514 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:55:31.514 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:31.514 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:55:31.514 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:55:31.514 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:31.514 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:31.514 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:31.514 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:55:31.524 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:55:31.734 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:55:31.734 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 393 ms overall
17-03-18 06:55:31.794 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:31.794 -07 000000606 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:55:31.804 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:55:31.804 -07 000000455 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:31.804 -07 000000455 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:55:31.804 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.124 mm/sec
17-03-18 06:55:31.904 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:55:31.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:55:32.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.46565,  FlowCellCompartmentTemperature: 22.10722, AmbientTemperature: 18.91843
17-03-18 06:55:32.754 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:33.314 -07 000000437 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:55:33.314 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 550 ms to get response, and 560 ms overall
17-03-18 06:55:33.314 -07 000000455 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:33.344 -07 000000455 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:55:33.344 -07 000000455 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:55:33.344 -07 000000455 INF: Y Motor: Moved to 64.8774 after 2016 ms (table move)
17-03-18 06:55:33.344 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170121 mm (DAC = 37163)
17-03-18 06:55:33.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.354 -07 000000455 INF: FPGA: Recv ZSGSRD 35773
17-03-18 06:55:33.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.37009,  FlowCellCompartmentTemperature: 21.92273, AmbientTemperature: 18.92256
17-03-18 06:55:33.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:33.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.364 -07 000000455 INF: FPGA: Recv ZSGSRD 35774
17-03-18 06:55:33.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.374 -07 000000576 INF: FPGA: Recv ZSGSRD 35775
17-03-18 06:55:33.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.384 -07 000000447 INF: FPGA: Recv ZSGSRD 35772
17-03-18 06:55:33.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.394 -07 000000455 INF: FPGA: Recv ZSGSRD 35772
17-03-18 06:55:33.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.404 -07 000000576 INF: FPGA: Recv ZSGSRD 35776
17-03-18 06:55:33.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.414 -07 000000455 INF: FPGA: Recv ZSGSRD 35771
17-03-18 06:55:33.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.424 -07 000000437 INF: FPGA: Recv ZSGSRD 35773
17-03-18 06:55:33.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.434 -07 000000455 INF: FPGA: Recv ZSGSRD 35773
17-03-18 06:55:33.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.444 -07 000000437 INF: FPGA: Recv ZSGSRD 35775
17-03-18 06:55:33.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:33.454 -07 000000455 INF: FPGA: Recv ZPIEZORD 31616
17-03-18 06:55:33.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.464 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.671 V. Piezo Error = -9.2 V.
17-03-18 06:55:33.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35773 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35773 (-169.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35771 (-169.2 uncal um), Max = 35776 (-169.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:55:33.464 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35773, posNoise = 3, negNoise = 2
17-03-18 06:55:33.464 -07 000000610 INF: Z Motor: After move to -0.170121, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:33.464 -07 000000610 INF: Z Motor: Settle wait time = 2018 ms, measure time = 111 ms (allowed 150 ms), total time = 2129 ms
17-03-18 06:55:33.464 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 06:55:33.504 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2175 ms
17-03-18 06:55:33.504 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:55:33.504 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.17013669295835. ----------
17-03-18 06:55:33.504 -07 000000610 INF: Cycle	155	Tile	7	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:55:33.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36986, sync = True, waitForSettling = True)
17-03-18 06:55:33.504 -07 000000610 INF: Z Motor: Moving to -0.169311 mm, started at -0.170137 mm, distance = 0.83 um
17-03-18 06:55:33.504 -07 000000610 INF: FPGA: Xmit ZDACW 36986\n [Z Motor]
17-03-18 06:55:33.504 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:55:33.514 -07 000000610 INF: FPGA: 'ZDACW 36986' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:55:33.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:33.514 -07 000000576 INF: FPGA: Recv ZDACR 36986
17-03-18 06:55:33.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:55:33.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.674 -07 000000461 INF: FPGA: Recv ZSGSRD 35648
17-03-18 06:55:33.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.684 -07 000000576 INF: FPGA: Recv ZSGSRD 35645
17-03-18 06:55:33.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.694 -07 000000447 INF: FPGA: Recv ZSGSRD 35645
17-03-18 06:55:33.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.704 -07 000000576 INF: FPGA: Recv ZSGSRD 35641
17-03-18 06:55:33.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.714 -07 000000447 INF: FPGA: Recv ZSGSRD 35646
17-03-18 06:55:33.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.724 -07 000000430 INF: FPGA: Recv ZSGSRD 35644
17-03-18 06:55:33.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.734 -07 000000447 INF: FPGA: Recv ZSGSRD 35646
17-03-18 06:55:33.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.744 -07 000000430 INF: FPGA: Recv ZSGSRD 35646
17-03-18 06:55:33.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.754 -07 000000455 INF: FPGA: Recv ZSGSRD 35647
17-03-18 06:55:33.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:33.764 -07 000000437 INF: FPGA: Recv ZSGSRD 35647
17-03-18 06:55:33.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:33.774 -07 000000455 INF: FPGA: Recv ZPIEZORD 31455
17-03-18 06:55:33.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:33.784 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -9.2 V.
17-03-18 06:55:33.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35646 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35646 (-168.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35641 (-168.4 uncal um), Max = 35648 (-168.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:55:33.784 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35646, posNoise = 2, negNoise = 5
17-03-18 06:55:33.784 -07 000000610 INF: Z Motor: After move to -0.169311, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:33.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:55:33.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:33.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:33.784 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:33.784 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:33.784 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:55:33.784 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:55:33.784 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:55:33.784 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:33.784 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:55:33.784 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:55:33.784 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:55:33.784 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:55:33.794 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:55:33.794 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:55:33.794 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:55:33.794 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:55:33.804 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:55:33.804 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:55:33.804 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:55:33.804 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:55:33.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37163 150\n [Camera]
17-03-18 06:55:34.004 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 06:55:34.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.37009,  FlowCellCompartmentTemperature: 21.92273, AmbientTemperature: 18.92256
17-03-18 06:55:34.474 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.001704,
17-03-18 06:55:34.474 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:55:34.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:55:34.474 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:34.474 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:55:34.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:55:34.474 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:34.594 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:34.594 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:55:34.594 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:34.594 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 06:55:34.664 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37163 855
17-03-18 06:55:34.984 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:55:34.984 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 06:55:34.984 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:55:34.984 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:34.984 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:55:34.984 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:34.984 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:55:34.984 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:55:34.984 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-18 06:55:34.994 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-18 06:55:34.994 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:55:35.044 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:55:35.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:55:35.044 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:35.044 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:55:35.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:55:35.044 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:35.044 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:35.044 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:55:35.054 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:35.054 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:55:35.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.25566,  FlowCellCompartmentTemperature: 22.10143, AmbientTemperature: 18.91636
17-03-18 06:55:35.424 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:55:35.424 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:55:35.424 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:35.424 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:55:35.424 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:55:35.424 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:35.434 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:55:35.434 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:55:35.434 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:55:35.434 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:55:35.444 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:55:35.444 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:55:35.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37163 150' command took 2 ms to send, 1635 ms to get response, and 1641 ms overall
17-03-18 06:55:35.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:55:35.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87744140625, Z-Position -0.169320818016346. ------
17-03-18 06:55:35.454 -07 000000479 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17605 mm
17-03-18 06:55:35.454 -07 000000479 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:35.454 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:55:36.314 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:55:36.314 -07 000000591 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 06:55:36.314 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:36.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.25566,  FlowCellCompartmentTemperature: 22.10143, AmbientTemperature: 18.91636
17-03-18 06:55:37.314 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:55:37.314 -07 000000606 INF: FPGA: Recv YRDPOS 132869
17-03-18 06:55:37.314 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1850 ms to get response, and 1856 ms overall
17-03-18 06:55:37.314 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:55:37.314 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-18 06:55:37.314 -07 000000591 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:37.314 -07 000000591 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:55:37.314 -07 000000591 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:55:37.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:55:37.314 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:55:37.314 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38459, sync = True, waitForSettling = False)
17-03-18 06:55:37.314 -07 000000606 INF: Z Motor: Moving to -0.176054 mm, started at -0.169321 mm, distance = -6.73 um
17-03-18 06:55:37.324 -07 000000606 INF: FPGA: Xmit ZDACW 38459\n [Z Motor]
17-03-18 06:55:37.334 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:55:37.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.13518,  FlowCellCompartmentTemperature: 21.90816, AmbientTemperature: 18.91636
17-03-18 06:55:37.814 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:55:37.814 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:55:37.814 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:55:37.814 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 490 ms to get response, and 499 ms overall
17-03-18 06:55:37.814 -07 000000606 INF: FPGA: 'ZDACW 38459' command took 0 ms to send, 480 ms to get response, and 497 ms overall
17-03-18 06:55:37.814 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 470 ms to get response, and 498 ms overall
17-03-18 06:55:37.824 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:37.824 -07 000000455 INF: FPGA: Recv ZDACR 38459
17-03-18 06:55:37.834 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:55:37.834 -07 000000606 INF: Z Motor: MoveAbsStepped took 517 ms (did NOT wait for settling yet))
17-03-18 06:55:37.874 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:37.874 -07 000000606 INF: FPGA: Recv YRDPOS 134579
17-03-18 06:55:37.884 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:37.884 -07 000000591 INF: Y Motor: Encoder = 134579 = motor step 105139.8 = 65.7124 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:37.884 -07 000000591 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:55:37.884 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 499 ms, distance = 0.845 mm, average velocity = 1.694 mm/sec
17-03-18 06:55:38.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 22.13518,  FlowCellCompartmentTemperature: 21.90816, AmbientTemperature: 18.9195
17-03-18 06:55:38.834 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:38.834 -07 000000626 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:55:38.844 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:38.844 -07 000000591 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:38.884 -07 000000591 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:55:38.884 -07 000000591 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:55:38.884 -07 000000591 INF: Y Motor: Moved to 65.7129 after 2570 ms (table move)
17-03-18 06:55:38.884 -07 000000479 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176054 mm (DAC = 38459)
17-03-18 06:55:38.884 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:38.884 -07 000000447 INF: FPGA: Recv ZSGSRD 36694
17-03-18 06:55:38.894 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:55:38.894 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:38.894 -07 000000591 INF: FPGA: Recv ZSGSRD 36689
17-03-18 06:55:38.904 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:38.904 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:38.904 -07 000000447 INF: FPGA: Recv ZSGSRD 36692
17-03-18 06:55:38.914 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:38.914 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:38.914 -07 000000447 INF: FPGA: Recv ZSGSRD 36700
17-03-18 06:55:38.924 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:38.924 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:38.924 -07 000000591 INF: FPGA: Recv ZSGSRD 36698
17-03-18 06:55:38.934 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:38.934 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:38.934 -07 000000591 INF: FPGA: Recv ZSGSRD 36692
17-03-18 06:55:38.944 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:38.944 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:38.944 -07 000000591 INF: FPGA: Recv ZSGSRD 36689
17-03-18 06:55:38.954 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:38.954 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:38.954 -07 000000591 INF: FPGA: Recv ZSGSRD 36696
17-03-18 06:55:38.964 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:38.964 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:38.964 -07 000000480 INF: FPGA: Recv ZSGSRD 36700
17-03-18 06:55:38.974 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:55:38.974 -07 000000479 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:38.974 -07 000000585 INF: FPGA: Recv ZSGSRD 36698
17-03-18 06:55:38.984 -07 000000479 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:38.984 -07 000000479 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:38.984 -07 000000585 INF: FPGA: Recv ZPIEZORD 32808
17-03-18 06:55:38.994 -07 000000479 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:38.994 -07 000000479 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.868 V. Piezo Error = -8.6 V.
17-03-18 06:55:38.994 -07 000000479 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36695 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36695 (-175.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36689 (-175.1 uncal um), Max = 36700 (-175.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:55:38.994 -07 000000479 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36695, posNoise = 5, negNoise = 6
17-03-18 06:55:38.994 -07 000000479 INF: Z Motor: After move to -0.176054, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:38.994 -07 000000479 INF: Z Motor: Settle wait time = 1572 ms, measure time = 105 ms (allowed 150 ms), total time = 1677 ms
17-03-18 06:55:38.994 -07 000000479 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:55:39.044 -07 000000479 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3586 ms
17-03-18 06:55:39.044 -07 000000479 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:55:39.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:39.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:39.044 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:39.044 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:39.044 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:55:39.044 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:39.044 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:55:39.044 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:55:39.044 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:55:39.044 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:55:39.064 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:55:39.064 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:55:39.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:55:39.114 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:55:39.364 -07 000000462 INF: Predictive Diagnostic Log Target Temperature Set: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, TargetTemperature: 22, FlowCellHeatSinkTemperature: 21.95218,  FlowCellCompartmentTemperature: 21.91107, AmbientTemperature: 18.91434
17-03-18 06:55:39.414 -07 000000479 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:55:39.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:55:39.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:55:39.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-18 06:55:39.454 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:55:39.454 -07 000000479 INF: FPGA: Recv CAMSNAP
17-03-18 06:55:39.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 06:55:39.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:55:39.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:39.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:55:39.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:55:39.554 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:55:39.554 -07 000000591 INF: Autofocus start
17-03-18 06:55:39.554 -07 000000591 INF: MeasureProfile start
17-03-18 06:55:39.554 -07 000000447 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:55:39.564 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:55:39.564 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:55:39.564 -07 000000591 INF: MeasureProfile done
17-03-18 06:55:39.564 -07 000000591 INF: X=-32  Z correction [um]=-0.2344
17-03-18 06:55:39.564 -07 000000591 INF: Autofocus finished
17-03-18 06:55:39.764 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:55:39.764 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 06:55:39.764 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.176059816553053. ----------
17-03-18 06:55:39.774 -07 000000610 INF: Cycle	155	Tile	8	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:55:39.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36921, sync = True, waitForSettling = True)
17-03-18 06:55:39.774 -07 000000610 INF: Z Motor: Moving to -0.169014 mm, started at -0.176060 mm, distance = 7.05 um
17-03-18 06:55:39.774 -07 000000610 INF: FPGA: Xmit ZDACW 36921\n [Z Motor]
17-03-18 06:55:39.774 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:55:39.784 -07 000000610 INF: FPGA: 'ZDACW 36921' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:55:39.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:39.784 -07 000000576 INF: FPGA: Recv ZDACR 36921
17-03-18 06:55:39.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:39.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:55:39.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:39.944 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.997626,
17-03-18 06:55:39.944 -07 000000461 INF: FPGA: Recv ZSGSRD 35600
17-03-18 06:55:39.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:39.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:39.974 -07 000000480 INF: FPGA: Recv ZSGSRD 35601
17-03-18 06:55:39.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:55:39.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:39.984 -07 000000480 INF: FPGA: Recv ZSGSRD 35599
17-03-18 06:55:39.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:40.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:40.014 -07 000000576 INF: FPGA: Recv ZSGSRD 35600
17-03-18 06:55:40.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:55:40.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:40.024 -07 000000626 INF: FPGA: Recv ZSGSRD 35602
17-03-18 06:55:40.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:40.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:40.034 -07 000000626 INF: FPGA: Recv ZSGSRD 35596
17-03-18 06:55:40.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:40.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:40.044 -07 000000480 INF: FPGA: Recv ZSGSRD 35597
17-03-18 06:55:40.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:40.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:40.054 -07 000000480 INF: FPGA: Recv ZSGSRD 35601
17-03-18 06:55:40.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:40.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:40.064 -07 000000480 INF: FPGA: Recv ZSGSRD 35600
17-03-18 06:55:40.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:40.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:40.074 -07 000000480 INF: FPGA: Recv ZSGSRD 35595
17-03-18 06:55:40.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:40.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:40.084 -07 000000480 INF: FPGA: Recv ZPIEZORD 31355
17-03-18 06:55:40.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:40.094 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -9.4 V.
17-03-18 06:55:40.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35599 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35600 (-168.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35595 (-168.1 uncal um), Max = 35602 (-168.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:55:40.094 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35599, posNoise = 3, negNoise = 4
17-03-18 06:55:40.094 -07 000000610 INF: Z Motor: After move to -0.169014, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:40.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 318 ms)
17-03-18 06:55:40.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:40.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:40.094 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:40.094 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:40.094 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:55:40.094 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:40.094 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:55:40.094 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:55:40.094 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:55:40.094 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:55:40.094 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:55:40.094 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:55:40.104 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:55:40.104 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:55:40.104 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:55:40.104 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:55:40.114 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:55:40.114 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:55:40.114 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:55:40.114 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:55:40.114 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37097 150\n [Camera]
17-03-18 06:55:40.314 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:55:40.364 -07 000000462 INF: FlowCellTempControl: Setting temperature polling rate to 00:00:05 ms
17-03-18 06:55:40.784 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:55:40.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:55:40.794 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:40.794 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:55:40.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:55:40.794 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:40.794 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:40.794 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:55:40.804 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:40.804 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:55:40.984 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37097 855
17-03-18 06:55:41.134 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:55:41.174 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:55:41.174 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:55:41.174 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:41.184 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:55:41.184 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:55:41.184 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:41.184 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:55:41.184 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 06:55:41.184 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:55:41.194 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:55:41.354 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:55:41.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:55:41.354 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:41.364 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:41.364 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:55:41.364 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:55:41.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:55:41.364 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:41.364 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:41.364 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) start.
17-03-18 06:55:41.544 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:55:41.554 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:55:41.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37097 150' command took 2 ms to send, 1420 ms to get response, and 1431 ms overall
17-03-18 06:55:41.554 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169400
17-03-18 06:55:41.554 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16940 mm
17-03-18 06:55:41.554 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:41.554 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:55:41.554 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 06:55:41.554 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 37005, sync = True, waitForSettling = False)
17-03-18 06:55:41.554 -07 000000591 INF: Z Motor: Moving to -0.169398 mm, started at -0.169019 mm, distance = -0.38 um
17-03-18 06:55:41.554 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:41.564 -07 000000626 INF: FPGA: Recv YRDPOS 134580
17-03-18 06:55:41.564 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:55:41.564 -07 000000462 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:41.564 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:55:41.564 -07 000000462 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:55:41.564 -07 000000591 INF: FPGA: Xmit ZDACW 37005\n [Z Motor]
17-03-18 06:55:41.564 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:55:41.574 -07 000000591 INF: FPGA: 'ZDACW 37005' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:55:41.574 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:41.574 -07 000000626 INF: FPGA: Recv ZDACR 37005
17-03-18 06:55:41.584 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:55:41.584 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:41.584 -07 000000591 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 06:55:41.734 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:55:41.744 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:55:41.744 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:41.744 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:55:41.744 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:55:41.744 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:41.744 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:41.744 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:41.744 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:55:41.754 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:55:41.904 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:55:41.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:55:41.954 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 06:55:41.954 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:55:42.014 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:42.014 -07 000000626 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:55:42.024 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:55:42.024 -07 000000462 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:42.024 -07 000000462 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:55:42.024 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 06:55:42.974 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:42.974 -07 000000461 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:55:42.984 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:42.984 -07 000000462 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:43.014 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.015007, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:55:43.014 -07 000000462 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:55:43.014 -07 000000462 INF: Y Motor: Moved to 66.5376 after 1459 ms (table move)
17-03-18 06:55:43.014 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169398 mm (DAC = 37005)
17-03-18 06:55:43.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.024 -07 000000430 INF: FPGA: Recv ZSGSRD 35652
17-03-18 06:55:43.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:55:43.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.024 -07 000000626 INF: FPGA: Recv ZSGSRD 35659
17-03-18 06:55:43.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:55:43.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.034 -07 000000480 INF: FPGA: Recv ZSGSRD 35661
17-03-18 06:55:43.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.044 -07 000000437 INF: FPGA: Recv ZSGSRD 35651
17-03-18 06:55:43.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.054 -07 000000480 INF: FPGA: Recv ZSGSRD 35656
17-03-18 06:55:43.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.064 -07 000000437 INF: FPGA: Recv ZSGSRD 35656
17-03-18 06:55:43.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.074 -07 000000480 INF: FPGA: Recv ZSGSRD 35656
17-03-18 06:55:43.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.084 -07 000000591 INF: FPGA: Recv ZSGSRD 35661
17-03-18 06:55:43.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.094 -07 000000626 INF: FPGA: Recv ZSGSRD 35660
17-03-18 06:55:43.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.104 -07 000000430 INF: FPGA: Recv ZSGSRD 35652
17-03-18 06:55:43.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:43.114 -07 000000626 INF: FPGA: Recv ZPIEZORD 31518
17-03-18 06:55:43.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.124 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -9.1 V.
17-03-18 06:55:43.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35656 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35656 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35651 (-168.5 uncal um), Max = 35661 (-168.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:55:43.124 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35656, posNoise = 5, negNoise = 5
17-03-18 06:55:43.124 -07 000000610 INF: Z Motor: After move to -0.169398, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:43.124 -07 000000610 INF: Z Motor: Settle wait time = 1461 ms, measure time = 102 ms (allowed 150 ms), total time = 1563 ms
17-03-18 06:55:43.124 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:55:43.174 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 06:55:43.174 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:55:43.174 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53759765625, Z-position -0.169385060137764. ----------
17-03-18 06:55:43.174 -07 000000610 INF: Cycle	155	Tile	9	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:55:43.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36829, sync = True, waitForSettling = True)
17-03-18 06:55:43.174 -07 000000610 INF: Z Motor: Moving to -0.168592 mm, started at -0.169385 mm, distance = 0.79 um
17-03-18 06:55:43.174 -07 000000610 INF: FPGA: Xmit ZDACW 36829\n [Z Motor]
17-03-18 06:55:43.184 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:55:43.184 -07 000000610 INF: FPGA: 'ZDACW 36829' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:55:43.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:43.184 -07 000000430 INF: FPGA: Recv ZDACR 36829
17-03-18 06:55:43.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:55:43.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.344 -07 000000626 INF: FPGA: Recv ZSGSRD 35532
17-03-18 06:55:43.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:43.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.354 -07 000000462 INF: FPGA: Recv ZSGSRD 35539
17-03-18 06:55:43.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.364 -07 000000430 INF: FPGA: Recv ZSGSRD 35530
17-03-18 06:55:43.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.374 -07 000000461 INF: FPGA: Recv ZSGSRD 35533
17-03-18 06:55:43.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.384 -07 000000480 INF: FPGA: Recv ZSGSRD 35530
17-03-18 06:55:43.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.394 -07 000000430 INF: FPGA: Recv ZSGSRD 35535
17-03-18 06:55:43.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.404 -07 000000480 INF: FPGA: Recv ZSGSRD 35531
17-03-18 06:55:43.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.414 -07 000000461 INF: FPGA: Recv ZSGSRD 35533
17-03-18 06:55:43.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.424 -07 000000480 INF: FPGA: Recv ZSGSRD 35537
17-03-18 06:55:43.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:43.434 -07 000000461 INF: FPGA: Recv ZSGSRD 35535
17-03-18 06:55:43.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:43.444 -07 000000480 INF: FPGA: Recv ZPIEZORD 31310
17-03-18 06:55:43.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:43.454 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.3 V.
17-03-18 06:55:43.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35534 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35533 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35530 (-167.7 uncal um), Max = 35539 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:55:43.454 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35534, posNoise = 5, negNoise = 4
17-03-18 06:55:43.454 -07 000000610 INF: Z Motor: After move to -0.168592, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:43.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 06:55:43.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:43.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:43.454 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:43.454 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:43.454 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:55:43.454 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:43.454 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:55:43.454 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:55:43.454 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:55:43.454 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:55:43.454 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:55:43.454 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:55:43.464 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:55:43.464 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:55:43.464 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:55:43.464 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:55:43.474 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:55:43.474 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 06:55:43.474 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:55:43.474 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:55:43.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37005 150\n [Camera]
17-03-18 06:55:43.684 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:55:44.154 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:55:44.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:55:44.154 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:44.154 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:44.154 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2639342000, 0x0, 391868352) start.
17-03-18 06:55:44.154 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:55:44.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:55:44.154 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:44.154 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:44.154 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:55:44.344 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37005 855
17-03-18 06:55:44.494 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:55:44.554 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2639342000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:55:44.554 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:55:44.554 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:44.554 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:55:44.554 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:55:44.554 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:44.554 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:44.554 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:55:44.564 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:44.564 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:55:44.714 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:55:44.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:55:44.724 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:44.724 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:55:44.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:55:44.724 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:44.724 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:44.724 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 06:55:44.724 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:44.724 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:55:44.914 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:55:44.914 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:55:44.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37005 150' command took 2 ms to send, 1421 ms to get response, and 1431 ms overall
17-03-18 06:55:44.914 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169487
17-03-18 06:55:44.914 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16949 mm
17-03-18 06:55:44.914 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:44.914 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:55:44.914 -07 000000461 INF: Y Motor: Moving to 67.3826 mm, started at 66.5376 mm, delta = 0.8450 mm
17-03-18 06:55:44.914 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:44.914 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37024, sync = True, waitForSettling = False)
17-03-18 06:55:44.914 -07 000000430 INF: Z Motor: Moving to -0.169485 mm, started at -0.168601 mm, distance = -0.88 um
17-03-18 06:55:44.914 -07 000000626 INF: FPGA: Recv YRDPOS 136269
17-03-18 06:55:44.924 -07 000000430 INF: FPGA: Xmit ZDACW 37024\n [Z Motor]
17-03-18 06:55:44.924 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:55:44.924 -07 000000461 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:44.924 -07 000000461 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:55:44.924 -07 000000461 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:55:44.924 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:55:44.934 -07 000000430 INF: FPGA: 'ZDACW 37024' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:55:44.934 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:55:44.944 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:44.944 -07 000000447 INF: FPGA: Recv ZDACR 37024
17-03-18 06:55:44.954 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:55:44.954 -07 000000430 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 06:55:45.124 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 06:55:45.124 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:55:45.124 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:45.124 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:55:45.124 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:55:45.124 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:45.124 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:45.124 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 06:55:45.124 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:45.134 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:55:45.304 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:55:45.304 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:55:45.334 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.009895,
17-03-18 06:55:45.374 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:45.374 -07 000000430 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:55:45.384 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:55:45.384 -07 000000461 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:45.384 -07 000000461 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 06:55:45.384 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.183 mm/sec
17-03-18 06:55:46.334 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:46.334 -07 000000591 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:55:46.344 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:46.344 -07 000000461 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:46.374 -07 000000461 INF: Y Motor: After move to 67.382607, error = -0.012001, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:55:46.374 -07 000000461 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:55:46.374 -07 000000461 INF: Y Motor: Moved to 67.3706 after 1456 ms (table move)
17-03-18 06:55:46.374 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169485 mm (DAC = 37024)
17-03-18 06:55:46.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.374 -07 000000430 INF: FPGA: Recv ZSGSRD 35675
17-03-18 06:55:46.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:55:46.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.384 -07 000000461 INF: FPGA: Recv ZSGSRD 35669
17-03-18 06:55:46.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.394 -07 000000480 INF: FPGA: Recv ZSGSRD 35671
17-03-18 06:55:46.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.404 -07 000000461 INF: FPGA: Recv ZSGSRD 35671
17-03-18 06:55:46.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.414 -07 000000447 INF: FPGA: Recv ZSGSRD 35675
17-03-18 06:55:46.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.424 -07 000000626 INF: FPGA: Recv ZSGSRD 35675
17-03-18 06:55:46.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.434 -07 000000447 INF: FPGA: Recv ZSGSRD 35678
17-03-18 06:55:46.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.444 -07 000000461 INF: FPGA: Recv ZSGSRD 35671
17-03-18 06:55:46.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.454 -07 000000447 INF: FPGA: Recv ZSGSRD 35668
17-03-18 06:55:46.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.464 -07 000000461 INF: FPGA: Recv ZSGSRD 35674
17-03-18 06:55:46.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:46.474 -07 000000447 INF: FPGA: Recv ZPIEZORD 31519
17-03-18 06:55:46.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.484 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -9.2 V.
17-03-18 06:55:46.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35673 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35672 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35668 (-168.6 uncal um), Max = 35678 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:55:46.484 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35673, posNoise = 5, negNoise = 5
17-03-18 06:55:46.484 -07 000000610 INF: Z Motor: After move to -0.169485, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:46.484 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-18 06:55:46.484 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:55:46.534 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 06:55:46.534 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:55:46.534 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37060546875, Z-position -0.169494271744174. ----------
17-03-18 06:55:46.534 -07 000000610 INF: Cycle	155	Tile	10	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:55:46.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36848, sync = True, waitForSettling = True)
17-03-18 06:55:46.534 -07 000000610 INF: Z Motor: Moving to -0.168679 mm, started at -0.169494 mm, distance = 0.81 um
17-03-18 06:55:46.534 -07 000000610 INF: FPGA: Xmit ZDACW 36848\n [Z Motor]
17-03-18 06:55:46.534 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:55:46.544 -07 000000610 INF: FPGA: 'ZDACW 36848' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:55:46.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:46.544 -07 000000461 INF: FPGA: Recv ZDACR 36848
17-03-18 06:55:46.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:55:46.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.704 -07 000000480 INF: FPGA: Recv ZSGSRD 35544
17-03-18 06:55:46.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:46.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.714 -07 000000430 INF: FPGA: Recv ZSGSRD 35549
17-03-18 06:55:46.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.724 -07 000000447 INF: FPGA: Recv ZSGSRD 35546
17-03-18 06:55:46.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.734 -07 000000626 INF: FPGA: Recv ZSGSRD 35543
17-03-18 06:55:46.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.744 -07 000000447 INF: FPGA: Recv ZSGSRD 35554
17-03-18 06:55:46.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.754 -07 000000626 INF: FPGA: Recv ZSGSRD 35548
17-03-18 06:55:46.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.764 -07 000000461 INF: FPGA: Recv ZSGSRD 35551
17-03-18 06:55:46.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.774 -07 000000480 INF: FPGA: Recv ZSGSRD 35545
17-03-18 06:55:46.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.784 -07 000000461 INF: FPGA: Recv ZSGSRD 35551
17-03-18 06:55:46.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:46.794 -07 000000626 INF: FPGA: Recv ZSGSRD 35550
17-03-18 06:55:46.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:46.804 -07 000000591 INF: FPGA: Recv ZPIEZORD 31333
17-03-18 06:55:46.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:46.814 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.623 V. Piezo Error = -9.3 V.
17-03-18 06:55:46.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35548 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35548 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35543 (-167.8 uncal um), Max = 35554 (-167.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:55:46.814 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35548, posNoise = 6, negNoise = 5
17-03-18 06:55:46.814 -07 000000610 INF: Z Motor: After move to -0.168679, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:46.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:55:46.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:46.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:46.814 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:46.814 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:46.814 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:55:46.814 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:55:46.814 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:55:46.814 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:46.814 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:55:46.814 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:55:46.814 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:55:46.814 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:55:46.824 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:55:46.824 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:55:46.824 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:55:46.824 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:55:46.834 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:55:46.834 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:55:46.834 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:55:46.834 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:55:46.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37024 150\n [Camera]
17-03-18 06:55:46.904 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:55:46.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:55:47.044 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:55:47.514 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:55:47.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:55:47.514 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:47.514 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:55:47.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:55:47.514 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:47.524 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:47.524 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:55:47.524 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:47.524 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:55:47.704 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37024 856
17-03-18 06:55:47.854 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:55:47.894 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:55:47.894 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:55:47.894 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:47.894 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:55:47.894 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:55:47.894 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:47.894 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:47.894 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:55:47.904 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:47.904 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:55:48.084 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:55:48.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:55:48.084 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:48.084 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:48.084 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:55:48.084 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:55:48.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:55:48.094 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:48.214 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:48.214 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 06:55:48.274 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-18 06:55:48.274 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:55:48.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37024 150' command took 2 ms to send, 1425 ms to get response, and 1431 ms overall
17-03-18 06:55:48.274 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.168883
17-03-18 06:55:48.274 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16888 mm
17-03-18 06:55:48.274 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:48.284 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:55:48.284 -07 000000430 INF: Y Motor: Moving to 68.2126 mm, started at 67.3706 mm, delta = 0.8420 mm
17-03-18 06:55:48.284 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:48.284 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 36893, sync = True, waitForSettling = False)
17-03-18 06:55:48.284 -07 000000606 INF: Z Motor: Moving to -0.168885 mm, started at -0.168691 mm, distance = -0.19 um
17-03-18 06:55:48.284 -07 000000626 INF: FPGA: Recv YRDPOS 137975
17-03-18 06:55:48.294 -07 000000606 INF: FPGA: Xmit ZDACW 36893\n [Z Motor]
17-03-18 06:55:48.294 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:48.294 -07 000000430 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:48.294 -07 000000430 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:55:48.294 -07 000000430 INF: Y Motor: Moving 1347 steps-25
17-03-18 06:55:48.294 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:55:48.304 -07 000000606 INF: FPGA: 'ZDACW 36893' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:55:48.304 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:48.304 -07 000000480 INF: FPGA: Recv ZDACR 36893
17-03-18 06:55:48.314 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:55:48.314 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:48.314 -07 000000606 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 06:55:48.474 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:55:48.474 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:55:48.474 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:48.474 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:48.474 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:55:48.594 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:55:48.594 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:55:48.594 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:48.594 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:48.604 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-18 06:55:48.694 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:55:48.694 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 8 ms to send, 376 ms to get response, and 405 ms overall
17-03-18 06:55:48.744 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:48.754 -07 000000444 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:55:48.754 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:55:48.754 -07 000000430 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:48.754 -07 000000430 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 06:55:48.754 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 405 ms, distance = 0.842 mm, average velocity = 2.079 mm/sec
17-03-18 06:55:49.704 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:49.704 -07 000000012 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:55:49.714 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:49.714 -07 000000430 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:49.744 -07 000000430 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:55:49.744 -07 000000430 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:55:49.744 -07 000000430 INF: Y Motor: Moved to 68.2036 after 1462 ms (table move)
17-03-18 06:55:49.744 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168885 mm (DAC = 36893)
17-03-18 06:55:49.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:49.744 -07 000000461 INF: FPGA: Recv ZSGSRD 35581
17-03-18 06:55:49.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:55:49.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:49.754 -07 000000626 INF: FPGA: Recv ZSGSRD 35584
17-03-18 06:55:49.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:49.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:49.764 -07 000000437 INF: FPGA: Recv ZSGSRD 35578
17-03-18 06:55:49.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:49.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:49.774 -07 000000585 INF: FPGA: Recv ZSGSRD 35581
17-03-18 06:55:49.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:49.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:49.784 -07 000000461 INF: FPGA: Recv ZSGSRD 35580
17-03-18 06:55:49.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:49.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:49.794 -07 000000444 INF: FPGA: Recv ZSGSRD 35577
17-03-18 06:55:49.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:49.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:49.804 -07 000000479 INF: FPGA: Recv ZSGSRD 35578
17-03-18 06:55:49.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:49.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:49.814 -07 000000585 INF: FPGA: Recv ZSGSRD 35576
17-03-18 06:55:49.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:49.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:49.824 -07 000000447 INF: FPGA: Recv ZSGSRD 35581
17-03-18 06:55:49.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:49.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:49.834 -07 000000444 INF: FPGA: Recv ZSGSRD 35579
17-03-18 06:55:49.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:49.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:49.844 -07 000000626 INF: FPGA: Recv ZPIEZORD 31408
17-03-18 06:55:49.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:49.854 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.2 V.
17-03-18 06:55:49.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35580 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35580 (-168.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35576 (-168.0 uncal um), Max = 35584 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:55:49.854 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35580, posNoise = 4, negNoise = 4
17-03-18 06:55:49.854 -07 000000610 INF: Z Motor: After move to -0.168885, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:49.854 -07 000000610 INF: Z Motor: Settle wait time = 1464 ms, measure time = 107 ms (allowed 150 ms), total time = 1571 ms
17-03-18 06:55:49.854 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:55:49.904 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 06:55:49.904 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:55:49.904 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.16889682001499. ----------
17-03-18 06:55:49.904 -07 000000610 INF: Cycle	155	Tile	11	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:55:49.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36716, sync = True, waitForSettling = True)
17-03-18 06:55:49.904 -07 000000610 INF: Z Motor: Moving to -0.168075 mm, started at -0.168897 mm, distance = 0.82 um
17-03-18 06:55:49.904 -07 000000610 INF: FPGA: Xmit ZDACW 36716\n [Z Motor]
17-03-18 06:55:49.904 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:55:49.914 -07 000000610 INF: FPGA: 'ZDACW 36716' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:55:49.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:49.914 -07 000000461 INF: FPGA: Recv ZDACR 36716
17-03-18 06:55:49.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:49.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:55:50.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:50.074 -07 000000012 INF: FPGA: Recv ZSGSRD 35460
17-03-18 06:55:50.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:50.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:50.084 -07 000000576 INF: FPGA: Recv ZSGSRD 35458
17-03-18 06:55:50.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:50.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:50.094 -07 000000447 INF: FPGA: Recv ZSGSRD 35457
17-03-18 06:55:50.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:50.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:50.104 -07 000000461 INF: FPGA: Recv ZSGSRD 35458
17-03-18 06:55:50.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:50.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:50.114 -07 000000585 INF: FPGA: Recv ZSGSRD 35451
17-03-18 06:55:50.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:50.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:50.124 -07 000000444 INF: FPGA: Recv ZSGSRD 35451
17-03-18 06:55:50.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:50.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:50.134 -07 000000430 INF: FPGA: Recv ZSGSRD 35452
17-03-18 06:55:50.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:50.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:50.144 -07 000000461 INF: FPGA: Recv ZSGSRD 35451
17-03-18 06:55:50.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:50.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:50.154 -07 000000455 INF: FPGA: Recv ZSGSRD 35461
17-03-18 06:55:50.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:50.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:50.164 -07 000000430 INF: FPGA: Recv ZSGSRD 35452
17-03-18 06:55:50.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:50.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:50.174 -07 000000447 INF: FPGA: Recv ZPIEZORD 31229
17-03-18 06:55:50.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:50.184 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.3 V.
17-03-18 06:55:50.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35455 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35454 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35451 (-167.2 uncal um), Max = 35461 (-167.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:55:50.184 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35455, posNoise = 6, negNoise = 4
17-03-18 06:55:50.184 -07 000000610 INF: Z Motor: After move to -0.168075, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:50.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:55:50.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:50.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:50.184 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:50.184 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:50.184 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:55:50.184 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:55:50.184 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:55:50.184 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:50.184 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:55:50.184 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:55:50.184 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:55:50.184 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:55:50.194 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:55:50.194 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:55:50.194 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:55:50.194 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:55:50.204 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:55:50.204 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:55:50.204 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:55:50.204 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:55:50.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36893 150\n [Camera]
17-03-18 06:55:50.414 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:55:50.694 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.019446,
17-03-18 06:55:50.884 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:55:50.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:55:50.884 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:50.884 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:55:50.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:55:50.884 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:50.884 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:50.884 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:55:50.884 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:50.884 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:55:51.074 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36893 855
17-03-18 06:55:51.224 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:55:51.264 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:55:51.264 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:55:51.264 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:51.264 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:55:51.264 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:55:51.264 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:51.264 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:51.264 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:55:51.264 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:51.274 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:55:51.444 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:55:51.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:55:51.454 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:51.454 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:55:51.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:55:51.454 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:51.454 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:51.454 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) start.
17-03-18 06:55:51.454 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:51.454 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:55:51.644 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-18 06:55:51.644 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:55:51.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36893 150' command took 2 ms to send, 1421 ms to get response, and 1430 ms overall
17-03-18 06:55:51.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:55:51.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20361328125, Z-Position -0.16809379349727. ------
17-03-18 06:55:51.644 -07 000000585 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17473 mm
17-03-18 06:55:51.644 -07 000000585 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:51.644 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:55:51.654 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38169, sync = True, waitForSettling = False)
17-03-18 06:55:51.654 -07 000000462 INF: Z Motor: Moving to -0.174726 mm, started at -0.168094 mm, distance = -6.63 um
17-03-18 06:55:51.654 -07 000000462 INF: FPGA: Xmit ZDACW 38169\n [Z Motor]
17-03-18 06:55:51.654 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:55:51.654 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:55:51.654 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:55:51.654 -07 000000444 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 06:55:51.654 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:55:51.664 -07 000000462 INF: FPGA: 'ZDACW 38169' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:55:51.664 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:55:51.674 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:51.674 -07 000000606 INF: FPGA: Recv YRDPOS 139681
17-03-18 06:55:51.684 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:51.684 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:55:51.684 -07 000000444 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:51.684 -07 000000444 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:55:51.684 -07 000000444 INF: Y Motor: Moving 1342 steps-18
17-03-18 06:55:51.684 -07 000000591 INF: FPGA: Recv ZDACR 38169
17-03-18 06:55:51.694 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:55:51.694 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:55:51.694 -07 000000462 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 06:55:51.834 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:55:51.834 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:55:51.834 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:51.834 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:55:51.834 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:55:51.834 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:51.834 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:51.834 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:55:51.844 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:55:51.844 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:55:51.864 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:55:51.864 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 06:55:51.904 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:55:51.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:55:52.064 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 06:55:52.064 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 06:55:52.124 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:52.124 -07 000000437 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:55:52.134 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:55:52.134 -07 000000444 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:52.134 -07 000000444 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 06:55:52.134 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.162 mm/sec
17-03-18 06:55:53.084 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:53.084 -07 000000606 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:55:53.094 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:53.094 -07 000000444 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:53.124 -07 000000444 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:55:53.124 -07 000000444 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:55:53.124 -07 000000444 INF: Y Motor: Moved to 69.0259 after 1471 ms (table move)
17-03-18 06:55:53.124 -07 000000585 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174726 mm (DAC = 38169)
17-03-18 06:55:53.124 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:53.134 -07 000000430 INF: FPGA: Recv ZSGSRD 36494
17-03-18 06:55:53.134 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:55:53.134 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:53.134 -07 000000455 INF: FPGA: Recv ZSGSRD 36495
17-03-18 06:55:53.144 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:55:53.144 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:53.144 -07 000000479 INF: FPGA: Recv ZSGSRD 36481
17-03-18 06:55:53.154 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:53.154 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:53.154 -07 000000591 INF: FPGA: Recv ZSGSRD 36479
17-03-18 06:55:53.164 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:53.164 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:53.164 -07 000000479 INF: FPGA: Recv ZSGSRD 36483
17-03-18 06:55:53.174 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:53.174 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:53.174 -07 000000455 INF: FPGA: Recv ZSGSRD 36496
17-03-18 06:55:53.184 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:53.184 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:53.184 -07 000000479 INF: FPGA: Recv ZSGSRD 36492
17-03-18 06:55:53.194 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:53.194 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:53.194 -07 000000455 INF: FPGA: Recv ZSGSRD 36490
17-03-18 06:55:53.204 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:53.204 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:53.204 -07 000000479 INF: FPGA: Recv ZSGSRD 36486
17-03-18 06:55:53.214 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:53.214 -07 000000585 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:53.214 -07 000000626 INF: FPGA: Recv ZSGSRD 36489
17-03-18 06:55:53.224 -07 000000585 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:53.224 -07 000000585 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:53.224 -07 000000430 INF: FPGA: Recv ZPIEZORD 32575
17-03-18 06:55:53.234 -07 000000585 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:53.234 -07 000000585 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.824 V. Piezo Error = -8.7 V.
17-03-18 06:55:53.234 -07 000000585 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36488 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36490 (-173.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36479 (-173.8 uncal um), Max = 36496 (-173.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:55:53.234 -07 000000585 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36488, posNoise = 8, negNoise = 9
17-03-18 06:55:53.234 -07 000000585 INF: Z Motor: After move to -0.174726, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:53.234 -07 000000585 INF: Z Motor: Settle wait time = 1475 ms, measure time = 103 ms (allowed 150 ms), total time = 1578 ms
17-03-18 06:55:53.234 -07 000000585 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:55:53.284 -07 000000585 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 06:55:53.284 -07 000000585 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:55:53.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:53.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:53.284 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:53.284 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:53.284 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:55:53.284 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:53.284 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:55:53.284 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:55:53.294 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:55:53.294 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:55:53.304 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 06:55:53.304 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 06:55:53.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:55:53.354 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:55:53.644 -07 000000585 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:55:53.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:55:53.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:55:53.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) start.
17-03-18 06:55:53.684 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:55:53.684 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 06:55:53.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 386 ms overall
17-03-18 06:55:53.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:55:53.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:53.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:55:53.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:55:53.794 -07 000000455 INF: Autofocus start
17-03-18 06:55:53.794 -07 000000455 INF: MeasureProfile start
17-03-18 06:55:53.794 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:55:53.794 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:55:53.804 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:55:53.804 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:55:53.804 -07 000000455 INF: MeasureProfile done
17-03-18 06:55:53.804 -07 000000455 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:55:53.804 -07 000000455 INF: Autofocus finished
17-03-18 06:55:54.004 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:55:54.004 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:55:54.004 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.174730004639709. ----------
17-03-18 06:55:54.014 -07 000000610 INF: Cycle	155	Tile	12	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:55:54.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36702, sync = True, waitForSettling = True)
17-03-18 06:55:54.014 -07 000000610 INF: Z Motor: Moving to -0.168011 mm, started at -0.174730 mm, distance = 6.72 um
17-03-18 06:55:54.014 -07 000000610 INF: FPGA: Xmit ZDACW 36702\n [Z Motor]
17-03-18 06:55:54.014 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:55:54.024 -07 000000610 INF: FPGA: 'ZDACW 36702' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:55:54.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:54.024 -07 000000480 INF: FPGA: Recv ZDACR 36702
17-03-18 06:55:54.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:54.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:55:54.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:54.184 -07 000000461 INF: FPGA: Recv ZSGSRD 35445
17-03-18 06:55:54.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:54.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:54.194 -07 000000576 INF: FPGA: Recv ZSGSRD 35448
17-03-18 06:55:54.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:54.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:54.204 -07 000000461 INF: FPGA: Recv ZSGSRD 35444
17-03-18 06:55:54.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:54.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:54.214 -07 000000444 INF: FPGA: Recv ZSGSRD 35428
17-03-18 06:55:54.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:54.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:54.224 -07 000000461 INF: FPGA: Recv ZSGSRD 35455
17-03-18 06:55:54.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:54.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:54.234 -07 000000455 INF: FPGA: Recv ZSGSRD 35451
17-03-18 06:55:54.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:54.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:54.244 -07 000000606 INF: FPGA: Recv ZSGSRD 35435
17-03-18 06:55:54.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:54.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:54.254 -07 000000455 INF: FPGA: Recv ZSGSRD 35448
17-03-18 06:55:54.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:54.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:54.264 -07 000000480 INF: FPGA: Recv ZSGSRD 35445
17-03-18 06:55:54.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:54.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:54.274 -07 000000430 INF: FPGA: Recv ZSGSRD 35446
17-03-18 06:55:54.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:54.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:54.284 -07 000000455 INF: FPGA: Recv ZPIEZORD 31230
17-03-18 06:55:54.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:54.294 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.3 V.
17-03-18 06:55:54.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35444 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35446 (-167.2 uncal um), StdDev = 8 (0.1 uncal um), Range = 27 (0.2 uncal um), Min = 35428 (-167.1 uncal um), Max = 35455 (-167.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 16 (0.1 uncal um)
17-03-18 06:55:54.294 -07 000000610 INF: Z Motor: ADC noise = 16, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35444, posNoise = 11, negNoise = 16
17-03-18 06:55:54.294 -07 000000610 INF: Z Motor: After move to -0.168011, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:54.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:55:54.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:54.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:54.294 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:54.294 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:55:54.294 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:55:54.294 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:55:54.294 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:54.294 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:54.294 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:55:54.294 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:55:54.294 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:55:54.294 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:55:54.304 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:55:54.304 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:55:54.304 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:55:54.304 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:55:54.314 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:55:54.314 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:55:54.314 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:55:54.314 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:55:54.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36879 150\n [Camera]
17-03-18 06:55:54.514 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:55:54.984 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:55:54.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:55:54.984 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:54.984 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:54.984 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2639342000, 0x0, 391868352) start.
17-03-18 06:55:54.984 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:55:54.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:55:54.984 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:54.984 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:54.984 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:55:55.174 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36879 855
17-03-18 06:55:55.324 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:55:55.364 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2639342000, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:55:55.364 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:55:55.364 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:55.364 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:55:55.364 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:55:55.364 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:55.374 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:55.374 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:55:55.374 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:55:55.384 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:55:55.554 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:55:55.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:55:55.554 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:55.554 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:55.554 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:55:55.554 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:55:55.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:55:55.554 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:55.554 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:55.554 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 06:55:55.744 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:55:55.744 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:55:55.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36879 150' command took 2 ms to send, 1426 ms to get response, and 1431 ms overall
17-03-18 06:55:55.744 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168235
17-03-18 06:55:55.744 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16823 mm
17-03-18 06:55:55.744 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:55.754 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:55:55.754 -07 000000461 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 06:55:55.754 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:55.754 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 36751, sync = True, waitForSettling = False)
17-03-18 06:55:55.754 -07 000000462 INF: Z Motor: Moving to -0.168235 mm, started at -0.168023 mm, distance = -0.21 um
17-03-18 06:55:55.754 -07 000000479 INF: FPGA: Recv YRDPOS 141365
17-03-18 06:55:55.764 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:55:55.764 -07 000000461 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:55.764 -07 000000461 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:55:55.764 -07 000000461 INF: Y Motor: Moving 1355 steps-34
17-03-18 06:55:55.764 -07 000000462 INF: FPGA: Xmit ZDACW 36751\n [Z Motor]
17-03-18 06:55:55.764 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:55:55.774 -07 000000462 INF: FPGA: 'ZDACW 36751' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:55:55.774 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:55:55.784 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:55.784 -07 000000479 INF: FPGA: Recv ZDACR 36751
17-03-18 06:55:55.794 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:55:55.794 -07 000000462 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 06:55:55.934 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:55:55.934 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:55:55.934 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:55.944 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:55:55.944 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:55:55.944 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:55:55.944 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:55.944 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:55:55.954 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:55:55.954 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:55:56.054 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.993549,
17-03-18 06:55:56.144 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:55:56.144 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:55:56.204 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:56.204 -07 000000455 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:55:56.214 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:55:56.214 -07 000000461 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:56.214 -07 000000461 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 06:55:56.214 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.847 mm, average velocity = 2.188 mm/sec
17-03-18 06:55:56.904 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:55:56.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:55:57.164 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:57.164 -07 000000479 INF: FPGA: Recv YRDPOS 143077
17-03-18 06:55:57.174 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:57.174 -07 000000461 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:57.204 -07 000000461 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:55:57.204 -07 000000461 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:55:57.204 -07 000000461 INF: Y Motor: Moved to 69.8618 after 1452 ms (table move)
17-03-18 06:55:57.204 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168235 mm (DAC = 36751)
17-03-18 06:55:57.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.204 -07 000000455 INF: FPGA: Recv ZSGSRD 35482
17-03-18 06:55:57.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:55:57.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.214 -07 000000461 INF: FPGA: Recv ZSGSRD 35483
17-03-18 06:55:57.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.224 -07 000000012 INF: FPGA: Recv ZSGSRD 35471
17-03-18 06:55:57.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.234 -07 000000461 INF: FPGA: Recv ZSGSRD 35472
17-03-18 06:55:57.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.244 -07 000000444 INF: FPGA: Recv ZSGSRD 35476
17-03-18 06:55:57.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.254 -07 000000462 INF: FPGA: Recv ZSGSRD 35482
17-03-18 06:55:57.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.264 -07 000000444 INF: FPGA: Recv ZSGSRD 35485
17-03-18 06:55:57.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.274 -07 000000462 INF: FPGA: Recv ZSGSRD 35477
17-03-18 06:55:57.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.284 -07 000000444 INF: FPGA: Recv ZSGSRD 35480
17-03-18 06:55:57.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.294 -07 000000462 INF: FPGA: Recv ZSGSRD 35475
17-03-18 06:55:57.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:57.304 -07 000000444 INF: FPGA: Recv ZPIEZORD 31292
17-03-18 06:55:57.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.314 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.608 V. Piezo Error = -9.2 V.
17-03-18 06:55:57.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35478 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35478 (-167.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35471 (-167.3 uncal um), Max = 35485 (-167.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:55:57.314 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35478, posNoise = 7, negNoise = 7
17-03-18 06:55:57.314 -07 000000610 INF: Z Motor: After move to -0.168235, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:57.314 -07 000000610 INF: Z Motor: Settle wait time = 1455 ms, measure time = 104 ms (allowed 150 ms), total time = 1559 ms
17-03-18 06:55:57.314 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:55:57.364 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 06:55:57.364 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:55:57.364 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.16824155037653. ----------
17-03-18 06:55:57.364 -07 000000610 INF: Cycle	155	Tile	13	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:55:57.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36574, sync = True, waitForSettling = True)
17-03-18 06:55:57.364 -07 000000610 INF: Z Motor: Moving to -0.167425 mm, started at -0.168242 mm, distance = 0.82 um
17-03-18 06:55:57.364 -07 000000610 INF: FPGA: Xmit ZDACW 36574\n [Z Motor]
17-03-18 06:55:57.374 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:55:57.374 -07 000000610 INF: FPGA: 'ZDACW 36574' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:55:57.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:57.374 -07 000000012 INF: FPGA: Recv ZDACR 36574
17-03-18 06:55:57.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:55:57.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.534 -07 000000479 INF: FPGA: Recv ZSGSRD 35351
17-03-18 06:55:57.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:55:57.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.544 -07 000000444 INF: FPGA: Recv ZSGSRD 35351
17-03-18 06:55:57.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.554 -07 000000479 INF: FPGA: Recv ZSGSRD 35348
17-03-18 06:55:57.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.564 -07 000000444 INF: FPGA: Recv ZSGSRD 35349
17-03-18 06:55:57.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.574 -07 000000461 INF: FPGA: Recv ZSGSRD 35346
17-03-18 06:55:57.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.584 -07 000000444 INF: FPGA: Recv ZSGSRD 35358
17-03-18 06:55:57.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.594 -07 000000461 INF: FPGA: Recv ZSGSRD 35356
17-03-18 06:55:57.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.604 -07 000000444 INF: FPGA: Recv ZSGSRD 35352
17-03-18 06:55:57.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.614 -07 000000461 INF: FPGA: Recv ZSGSRD 35352
17-03-18 06:55:57.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:55:57.624 -07 000000447 INF: FPGA: Recv ZSGSRD 35354
17-03-18 06:55:57.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:55:57.634 -07 000000462 INF: FPGA: Recv ZPIEZORD 31125
17-03-18 06:55:57.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:55:57.644 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.581 V. Piezo Error = -9.3 V.
17-03-18 06:55:57.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35352 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35352 (-166.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35346 (-166.5 uncal um), Max = 35358 (-166.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:55:57.644 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35352, posNoise = 6, negNoise = 6
17-03-18 06:55:57.644 -07 000000610 INF: Z Motor: After move to -0.167425, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:55:57.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:55:57.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:55:57.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:55:57.644 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:55:57.644 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:55:57.644 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:55:57.644 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:55:57.644 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:55:57.644 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:55:57.644 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:55:57.644 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:55:57.644 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:55:57.644 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:55:57.654 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:55:57.654 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:55:57.654 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:55:57.654 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:55:57.654 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:55:57.654 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:55:57.654 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:55:57.654 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:55:57.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36751 150\n [Camera]
17-03-18 06:55:57.864 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:55:58.334 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:55:58.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:55:58.334 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:58.334 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:55:58.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:55:58.334 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:58.344 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:58.344 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 06:55:58.344 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:58.344 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:55:58.524 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36751 855
17-03-18 06:55:58.674 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:55:58.714 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:55:58.714 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:55:58.714 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:58.724 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:55:58.724 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:55:58.724 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:58.724 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:58.724 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:55:58.724 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:58.734 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:55:58.904 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:55:58.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:55:58.904 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:55:58.904 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:55:58.904 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:55:58.904 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:55:58.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:55:58.914 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:55:58.914 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:55:58.914 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:55:59.094 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:55:59.094 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:55:59.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36751 150' command took 2 ms to send, 1426 ms to get response, and 1434 ms overall
17-03-18 06:55:59.094 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.167767
17-03-18 06:55:59.094 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16777 mm
17-03-18 06:55:59.094 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:55:59.104 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 36649, sync = True, waitForSettling = False)
17-03-18 06:55:59.104 -07 000000447 INF: Z Motor: Moving to -0.167768 mm, started at -0.167432 mm, distance = -0.34 um
17-03-18 06:55:59.104 -07 000000447 INF: FPGA: Xmit ZDACW 36649\n [Z Motor]
17-03-18 06:55:59.104 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:55:59.104 -07 000000012 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-18 06:55:59.104 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:55:59.114 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:59.114 -07 000000447 INF: FPGA: 'ZDACW 36649' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:55:59.114 -07 000000455 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:55:59.124 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:55:59.124 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:55:59.124 -07 000000012 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:59.124 -07 000000455 INF: FPGA: Recv ZDACR 36649
17-03-18 06:55:59.124 -07 000000012 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:55:59.124 -07 000000012 INF: Y Motor: Moving 1344 steps-22
17-03-18 06:55:59.134 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:55:59.134 -07 000000447 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 06:55:59.134 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:55:59.284 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:55:59.284 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:55:59.284 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:59.284 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:55:59.284 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:55:59.284 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:55:59.294 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:59.294 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:55:59.294 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:55:59.294 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:55:59.504 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 06:55:59.504 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 384 ms overall
17-03-18 06:55:59.564 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:55:59.564 -07 000000461 INF: FPGA: Recv YRDPOS 144767
17-03-18 06:55:59.574 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:55:59.574 -07 000000012 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:55:59.574 -07 000000012 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:55:59.574 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.841 mm, average velocity = 2.190 mm/sec
17-03-18 06:56:00.524 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:00.524 -07 000000626 INF: FPGA: Recv YRDPOS 144767
17-03-18 06:56:00.534 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:00.534 -07 000000012 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:00.564 -07 000000012 INF: Y Motor: After move to 70.702606, error = -0.015594, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:00.564 -07 000000012 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:56:00.564 -07 000000012 INF: Y Motor: Moved to 70.6870 after 1461 ms (table move)
17-03-18 06:56:00.564 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167768 mm (DAC = 36649)
17-03-18 06:56:00.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.574 -07 000000012 INF: FPGA: Recv ZSGSRD 35397
17-03-18 06:56:00.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 06:56:00.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.574 -07 000000012 INF: FPGA: Recv ZSGSRD 35410
17-03-18 06:56:00.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:56:00.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.584 -07 000000012 INF: FPGA: Recv ZSGSRD 35402
17-03-18 06:56:00.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.594 -07 000000626 INF: FPGA: Recv ZSGSRD 35398
17-03-18 06:56:00.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.604 -07 000000626 INF: FPGA: Recv ZSGSRD 35405
17-03-18 06:56:00.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.614 -07 000000461 INF: FPGA: Recv ZSGSRD 35407
17-03-18 06:56:00.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.624 -07 000000012 INF: FPGA: Recv ZSGSRD 35411
17-03-18 06:56:00.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.634 -07 000000437 INF: FPGA: Recv ZSGSRD 35405
17-03-18 06:56:00.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.644 -07 000000626 INF: FPGA: Recv ZSGSRD 35406
17-03-18 06:56:00.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.654 -07 000000461 INF: FPGA: Recv ZSGSRD 35407
17-03-18 06:56:00.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:00.664 -07 000000012 INF: FPGA: Recv ZPIEZORD 31196
17-03-18 06:56:00.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.674 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.3 V.
17-03-18 06:56:00.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35405 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35406 (-166.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35397 (-166.9 uncal um), Max = 35411 (-166.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:56:00.674 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35405, posNoise = 6, negNoise = 8
17-03-18 06:56:00.674 -07 000000610 INF: Z Motor: After move to -0.167768, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:00.674 -07 000000610 INF: Z Motor: Settle wait time = 1464 ms, measure time = 105 ms (allowed 150 ms), total time = 1569 ms
17-03-18 06:56:00.674 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:00.724 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 06:56:00.724 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:00.724 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68701171875, Z-position -0.167772582890182. ----------
17-03-18 06:56:00.724 -07 000000610 INF: Cycle	155	Tile	14	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:00.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36472, sync = True, waitForSettling = True)
17-03-18 06:56:00.724 -07 000000610 INF: Z Motor: Moving to -0.166958 mm, started at -0.167773 mm, distance = 0.81 um
17-03-18 06:56:00.724 -07 000000610 INF: FPGA: Xmit ZDACW 36472\n [Z Motor]
17-03-18 06:56:00.724 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:56:00.734 -07 000000610 INF: FPGA: 'ZDACW 36472' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:56:00.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:00.734 -07 000000626 INF: FPGA: Recv ZDACR 36472
17-03-18 06:56:00.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:00.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.894 -07 000000012 INF: FPGA: Recv ZSGSRD 35281
17-03-18 06:56:00.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:00.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.904 -07 000000461 INF: FPGA: Recv ZSGSRD 35275
17-03-18 06:56:00.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.914 -07 000000461 INF: FPGA: Recv ZSGSRD 35277
17-03-18 06:56:00.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.924 -07 000000012 INF: FPGA: Recv ZSGSRD 35279
17-03-18 06:56:00.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.934 -07 000000012 INF: FPGA: Recv ZSGSRD 35281
17-03-18 06:56:00.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.944 -07 000000626 INF: FPGA: Recv ZSGSRD 35279
17-03-18 06:56:00.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.954 -07 000000626 INF: FPGA: Recv ZSGSRD 35281
17-03-18 06:56:00.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.964 -07 000000626 INF: FPGA: Recv ZSGSRD 35281
17-03-18 06:56:00.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.974 -07 000000437 INF: FPGA: Recv ZSGSRD 35286
17-03-18 06:56:00.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:00.984 -07 000000626 INF: FPGA: Recv ZSGSRD 35275
17-03-18 06:56:00.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:00.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:00.994 -07 000000437 INF: FPGA: Recv ZPIEZORD 31021
17-03-18 06:56:01.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:01.004 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.565 V. Piezo Error = -9.4 V.
17-03-18 06:56:01.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35280 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35280 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35275 (-166.1 uncal um), Max = 35286 (-166.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:56:01.004 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35280, posNoise = 6, negNoise = 5
17-03-18 06:56:01.004 -07 000000610 INF: Z Motor: After move to -0.166958, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:01.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:56:01.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:01.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:01.004 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:01.004 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:01.004 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:01.004 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:01.004 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:01.004 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:01.004 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:01.004 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:01.004 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:56:01.004 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:01.014 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:56:01.014 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:01.014 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:56:01.014 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:01.024 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:56:01.024 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:56:01.024 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:56:01.024 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:56:01.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36649 150\n [Camera]
17-03-18 06:56:01.234 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:01.414 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.004458,
17-03-18 06:56:01.704 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:01.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:01.704 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:01.704 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:01.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:01.704 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:01.704 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:01.704 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:56:01.704 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:01.704 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:56:01.894 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36649 855
17-03-18 06:56:01.904 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:56:01.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:56:02.044 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:56:02.074 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:56:02.074 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 06:56:02.074 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:02.084 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:56:02.084 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:56:02.084 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:02.084 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:02.084 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:02.084 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:56:02.094 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 06:56:02.274 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:02.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:02.274 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:02.394 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:02.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:02.394 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:02.394 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:02.394 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 06:56:02.394 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:02.394 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:56:02.464 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:56:02.464 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:02.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36649 150' command took 2 ms to send, 1421 ms to get response, and 1430 ms overall
17-03-18 06:56:02.464 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.167813
17-03-18 06:56:02.464 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16781 mm
17-03-18 06:56:02.464 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:02.464 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:56:02.464 -07 000000591 INF: Y Motor: Moving to 71.5326 mm, started at 70.6870 mm, delta = 0.8456 mm
17-03-18 06:56:02.464 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:02.464 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 36659, sync = True, waitForSettling = False)
17-03-18 06:56:02.464 -07 000000576 INF: Z Motor: Moving to -0.167814 mm, started at -0.166970 mm, distance = -0.84 um
17-03-18 06:56:02.474 -07 000000576 INF: FPGA: Xmit ZDACW 36659\n [Z Motor]
17-03-18 06:56:02.474 -07 000000626 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:56:02.474 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 06:56:02.474 -07 000000591 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:02.474 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 06:56:02.474 -07 000000591 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:02.474 -07 000000591 INF: Y Motor: Moving 1352 steps-32
17-03-18 06:56:02.484 -07 000000576 INF: FPGA: 'ZDACW 36659' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:56:02.484 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:02.484 -07 000000444 INF: FPGA: Recv ZDACR 36659
17-03-18 06:56:02.494 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:02.494 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:02.494 -07 000000576 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 06:56:02.774 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:56:02.774 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:56:02.774 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:02.774 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:56:02.774 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:56:02.774 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:02.784 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:56:02.784 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:56:02.784 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-18 06:56:02.794 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:56:02.874 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 06:56:02.874 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 394 ms overall
17-03-18 06:56:02.924 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:02.924 -07 000000606 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:56:02.934 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:56:02.934 -07 000000591 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:02.934 -07 000000591 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:56:02.934 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.146 mm/sec
17-03-18 06:56:03.884 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:03.884 -07 000000585 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:56:03.894 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:03.894 -07 000000591 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:03.924 -07 000000591 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:03.924 -07 000000591 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:56:03.924 -07 000000591 INF: Y Motor: Moved to 71.5176 after 1456 ms (table move)
17-03-18 06:56:03.924 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167814 mm (DAC = 36659)
17-03-18 06:56:03.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:03.924 -07 000000447 INF: FPGA: Recv ZSGSRD 35411
17-03-18 06:56:03.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:56:03.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:03.934 -07 000000447 INF: FPGA: Recv ZSGSRD 35412
17-03-18 06:56:03.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:03.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:03.944 -07 000000447 INF: FPGA: Recv ZSGSRD 35409
17-03-18 06:56:03.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:03.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:03.954 -07 000000447 INF: FPGA: Recv ZSGSRD 35419
17-03-18 06:56:03.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:03.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:03.964 -07 000000447 INF: FPGA: Recv ZSGSRD 35409
17-03-18 06:56:03.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:03.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:03.974 -07 000000461 INF: FPGA: Recv ZSGSRD 35406
17-03-18 06:56:03.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:03.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:03.984 -07 000000461 INF: FPGA: Recv ZSGSRD 35410
17-03-18 06:56:03.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:03.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:03.994 -07 000000461 INF: FPGA: Recv ZSGSRD 35413
17-03-18 06:56:04.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:04.004 -07 000000444 INF: FPGA: Recv ZSGSRD 35415
17-03-18 06:56:04.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:56:04.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:04.014 -07 000000591 INF: FPGA: Recv ZSGSRD 35412
17-03-18 06:56:04.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:04.024 -07 000000012 INF: FPGA: Recv ZPIEZORD 31219
17-03-18 06:56:04.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.034 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -9.2 V.
17-03-18 06:56:04.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35412 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35412 (-166.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35406 (-166.9 uncal um), Max = 35419 (-167.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:56:04.034 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35412, posNoise = 7, negNoise = 6
17-03-18 06:56:04.034 -07 000000610 INF: Z Motor: After move to -0.167814, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:04.034 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 106 ms (allowed 150 ms), total time = 1564 ms
17-03-18 06:56:04.034 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:04.084 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 06:56:04.084 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:04.084 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.167817552375174. ----------
17-03-18 06:56:04.084 -07 000000610 INF: Cycle	155	Tile	15	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:04.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36482, sync = True, waitForSettling = True)
17-03-18 06:56:04.084 -07 000000610 INF: Z Motor: Moving to -0.167004 mm, started at -0.167818 mm, distance = 0.81 um
17-03-18 06:56:04.084 -07 000000610 INF: FPGA: Xmit ZDACW 36482\n [Z Motor]
17-03-18 06:56:04.084 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:56:04.094 -07 000000610 INF: FPGA: 'ZDACW 36482' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:56:04.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:04.094 -07 000000012 INF: FPGA: Recv ZDACR 36482
17-03-18 06:56:04.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:04.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:04.254 -07 000000606 INF: FPGA: Recv ZSGSRD 35289
17-03-18 06:56:04.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:04.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:04.264 -07 000000591 INF: FPGA: Recv ZSGSRD 35285
17-03-18 06:56:04.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:04.274 -07 000000437 INF: FPGA: Recv ZSGSRD 35283
17-03-18 06:56:04.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:04.284 -07 000000606 INF: FPGA: Recv ZSGSRD 35289
17-03-18 06:56:04.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:04.294 -07 000000437 INF: FPGA: Recv ZSGSRD 35289
17-03-18 06:56:04.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:04.304 -07 000000591 INF: FPGA: Recv ZSGSRD 35284
17-03-18 06:56:04.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:04.314 -07 000000591 INF: FPGA: Recv ZSGSRD 35291
17-03-18 06:56:04.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:04.324 -07 000000437 INF: FPGA: Recv ZSGSRD 35287
17-03-18 06:56:04.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:04.334 -07 000000606 INF: FPGA: Recv ZSGSRD 35293
17-03-18 06:56:04.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:04.344 -07 000000606 INF: FPGA: Recv ZSGSRD 35287
17-03-18 06:56:04.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:04.354 -07 000000437 INF: FPGA: Recv ZPIEZORD 31028
17-03-18 06:56:04.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:04.364 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.4 V.
17-03-18 06:56:04.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35288 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35288 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35283 (-166.1 uncal um), Max = 35293 (-166.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:56:04.364 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35288, posNoise = 5, negNoise = 5
17-03-18 06:56:04.364 -07 000000610 INF: Z Motor: After move to -0.167004, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:04.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:56:04.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:04.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:04.364 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:04.364 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:04.364 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:04.364 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:04.364 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:04.364 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:04.364 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:56:04.364 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:04.364 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:04.364 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:04.374 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:56:04.374 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:04.374 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:56:04.374 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:04.384 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 06:56:04.384 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 06:56:04.384 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:56:04.384 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:56:04.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36659 150\n [Camera]
17-03-18 06:56:04.584 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:05.054 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:05.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:05.054 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:05.064 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:05.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:05.064 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:05.064 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:05.064 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:56:05.064 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:05.064 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:56:05.254 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36659 855
17-03-18 06:56:05.394 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:56:05.434 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:56:05.434 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 06:56:05.434 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:05.434 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:56:05.434 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:56:05.434 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:05.444 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:56:05.444 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:56:05.444 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:56:05.444 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:56:05.624 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:05.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:05.624 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:05.624 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:05.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:05.634 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:05.744 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:05.744 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:56:05.754 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:05.754 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 06:56:05.814 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-18 06:56:05.814 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:05.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36659 150' command took 2 ms to send, 1418 ms to get response, and 1430 ms overall
17-03-18 06:56:05.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:56:05.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.517578125, Z-Position -0.167020950069596. ------
17-03-18 06:56:05.824 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:56:05.824 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17340 mm
17-03-18 06:56:05.824 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:05.824 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:56:05.824 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 37879, sync = True, waitForSettling = False)
17-03-18 06:56:05.824 -07 000000479 INF: Z Motor: Moving to -0.173399 mm, started at -0.167021 mm, distance = -6.38 um
17-03-18 06:56:05.824 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:56:05.824 -07 000000606 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 06:56:05.834 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:56:05.834 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:05.834 -07 000000430 INF: FPGA: Recv YRDPOS 146468
17-03-18 06:56:05.844 -07 000000479 INF: FPGA: Xmit ZDACW 37879\n [Z Motor]
17-03-18 06:56:05.844 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:56:05.844 -07 000000606 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:05.844 -07 000000606 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:05.844 -07 000000606 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:56:05.844 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:56:05.854 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:56:05.854 -07 000000479 INF: FPGA: 'ZDACW 37879' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 06:56:05.864 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:05.874 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:05.874 -07 000000437 INF: FPGA: Recv ZDACR 37879
17-03-18 06:56:05.884 -07 000000479 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:56:05.884 -07 000000479 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 06:56:06.054 -07 000000479 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:56:06.054 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:56:06.124 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:56:06.124 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:56:06.124 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:06.124 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 06:56:06.124 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:56:06.124 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:06.124 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:56:06.134 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-18 06:56:06.134 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:06.134 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-18 06:56:06.234 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 06:56:06.234 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:56:06.294 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:06.294 -07 000000462 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:56:06.304 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:56:06.304 -07 000000606 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:06.304 -07 000000606 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:56:06.304 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 06:56:06.774 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.016692,
17-03-18 06:56:06.904 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:56:06.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:56:07.254 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:07.254 -07 000000437 INF: FPGA: Recv YRDPOS 148169
17-03-18 06:56:07.264 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:07.264 -07 000000606 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:07.294 -07 000000606 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:07.294 -07 000000606 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:56:07.294 -07 000000606 INF: Y Motor: Moved to 72.3481 after 1465 ms (table move)
17-03-18 06:56:07.294 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173399 mm (DAC = 37879)
17-03-18 06:56:07.294 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:07.304 -07 000000462 INF: FPGA: Recv ZSGSRD 36290
17-03-18 06:56:07.304 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:56:07.304 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:07.304 -07 000000437 INF: FPGA: Recv ZSGSRD 36280
17-03-18 06:56:07.314 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:07.314 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:07.314 -07 000000462 INF: FPGA: Recv ZSGSRD 36280
17-03-18 06:56:07.324 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:07.324 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:07.324 -07 000000455 INF: FPGA: Recv ZSGSRD 36278
17-03-18 06:56:07.334 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:07.344 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:07.344 -07 000000606 INF: FPGA: Recv ZSGSRD 36287
17-03-18 06:56:07.354 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:56:07.374 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:07.374 -07 000000437 INF: FPGA: Recv ZSGSRD 36282
17-03-18 06:56:07.384 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:56:07.384 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:07.384 -07 000000012 INF: FPGA: Recv ZSGSRD 36278
17-03-18 06:56:07.394 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:07.404 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:07.404 -07 000000591 INF: FPGA: Recv ZSGSRD 36281
17-03-18 06:56:07.414 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:56:07.414 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:07.414 -07 000000606 INF: FPGA: Recv ZSGSRD 36284
17-03-18 06:56:07.424 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:07.434 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:07.434 -07 000000576 INF: FPGA: Recv ZSGSRD 36284
17-03-18 06:56:07.444 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:56:07.444 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:07.444 -07 000000012 INF: FPGA: Recv ZPIEZORD 32364
17-03-18 06:56:07.454 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:07.454 -07 000000626 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.780 V. Piezo Error = -8.7 V.
17-03-18 06:56:07.454 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36282 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36282 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36278 (-172.5 uncal um), Max = 36290 (-172.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:56:07.454 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36282, posNoise = 8, negNoise = 4
17-03-18 06:56:07.454 -07 000000626 INF: Z Motor: After move to -0.173399, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:07.454 -07 000000626 INF: Z Motor: Settle wait time = 1469 ms, measure time = 154 ms (allowed 150 ms), total time = 1623 ms
17-03-18 06:56:07.454 -07 000000626 INF: Z Motor: Warning: Actual position measuring time = 154 ms, longer than max expected time of 150 ms
17-03-18 06:56:07.454 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 06:56:07.454 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:07.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:07.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:07.454 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:07.454 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:07.454 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:56:07.454 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:07.464 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:07.464 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:56:07.464 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:56:07.464 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:56:07.474 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:56:07.474 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 06:56:07.484 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:56:07.524 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:56:07.824 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:56:07.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:56:07.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:56:07.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 06:56:07.864 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:56:07.864 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 06:56:07.864 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 06:56:07.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 06:56:07.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:07.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:56:07.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:56:07.964 -07 000000462 INF: Autofocus start
17-03-18 06:56:07.964 -07 000000462 INF: MeasureProfile start
17-03-18 06:56:07.964 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:56:07.964 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:56:07.974 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:56:07.974 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:56:07.974 -07 000000462 INF: MeasureProfile done
17-03-18 06:56:07.974 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-18 06:56:07.974 -07 000000462 INF: Autofocus finished
17-03-18 06:56:08.174 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:56:08.174 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:56:08.174 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.173406616938506. ----------
17-03-18 06:56:08.174 -07 000000610 INF: Cycle	155	Tile	16	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:08.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36394, sync = True, waitForSettling = True)
17-03-18 06:56:08.184 -07 000000610 INF: Z Motor: Moving to -0.166601 mm, started at -0.173407 mm, distance = 6.81 um
17-03-18 06:56:08.184 -07 000000610 INF: FPGA: Xmit ZDACW 36394\n [Z Motor]
17-03-18 06:56:08.184 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:56:08.194 -07 000000610 INF: FPGA: 'ZDACW 36394' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:08.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:08.194 -07 000000479 INF: FPGA: Recv ZDACR 36394
17-03-18 06:56:08.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:08.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:08.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:08.354 -07 000000430 INF: FPGA: Recv ZSGSRD 35227
17-03-18 06:56:08.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:08.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:08.364 -07 000000462 INF: FPGA: Recv ZSGSRD 35223
17-03-18 06:56:08.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:08.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:08.374 -07 000000455 INF: FPGA: Recv ZSGSRD 35221
17-03-18 06:56:08.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:08.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:08.384 -07 000000479 INF: FPGA: Recv ZSGSRD 35223
17-03-18 06:56:08.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:08.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:08.394 -07 000000430 INF: FPGA: Recv ZSGSRD 35224
17-03-18 06:56:08.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:08.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:08.404 -07 000000479 INF: FPGA: Recv ZSGSRD 35224
17-03-18 06:56:08.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:08.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:08.414 -07 000000462 INF: FPGA: Recv ZSGSRD 35222
17-03-18 06:56:08.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:08.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:08.424 -07 000000479 INF: FPGA: Recv ZSGSRD 35227
17-03-18 06:56:08.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:08.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:08.434 -07 000000462 INF: FPGA: Recv ZSGSRD 35223
17-03-18 06:56:08.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:08.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:08.444 -07 000000455 INF: FPGA: Recv ZSGSRD 35228
17-03-18 06:56:08.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:08.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:08.454 -07 000000430 INF: FPGA: Recv ZPIEZORD 30957
17-03-18 06:56:08.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:08.464 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.553 V. Piezo Error = -9.4 V.
17-03-18 06:56:08.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35224 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35224 (-165.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35221 (-165.7 uncal um), Max = 35228 (-165.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:56:08.464 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35224, posNoise = 4, negNoise = 3
17-03-18 06:56:08.464 -07 000000610 INF: Z Motor: After move to -0.166601, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:08.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:56:08.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:08.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:08.474 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:08.474 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:08.474 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:08.474 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:08.474 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:08.474 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:08.474 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:56:08.474 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:08.474 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:08.474 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:08.484 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:56:08.484 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:56:08.484 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:08.484 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:08.494 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 06:56:08.494 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:56:08.494 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:56:08.494 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:56:08.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36570 150\n [Camera]
17-03-18 06:56:08.694 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:09.174 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:09.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:09.174 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:09.174 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:09.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:09.174 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:09.174 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:09.174 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:56:09.184 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:09.184 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:56:09.364 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36570 855
17-03-18 06:56:09.514 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1006
17-03-18 06:56:09.554 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:56:09.554 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:56:09.554 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:09.564 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:56:09.564 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:56:09.564 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:09.564 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:09.564 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:09.564 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 06:56:09.564 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:56:09.734 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:09.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:09.744 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:09.744 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:09.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:09.744 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:09.744 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:09.744 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:56:09.744 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:09.744 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:56:09.934 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:56:09.934 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:09.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36570 150' command took 2 ms to send, 1421 ms to get response, and 1431 ms overall
17-03-18 06:56:09.934 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.166965
17-03-18 06:56:09.934 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16696 mm
17-03-18 06:56:09.934 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:09.934 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:56:09.934 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 36473, sync = True, waitForSettling = False)
17-03-18 06:56:09.934 -07 000000455 INF: Z Motor: Moving to -0.166963 mm, started at -0.166610 mm, distance = -0.35 um
17-03-18 06:56:09.934 -07 000000455 INF: FPGA: Xmit ZDACW 36473\n [Z Motor]
17-03-18 06:56:09.934 -07 000000462 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 06:56:09.944 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:09.944 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:56:09.944 -07 000000455 INF: FPGA: 'ZDACW 36473' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:56:09.944 -07 000000479 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:56:09.954 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:56:09.954 -07 000000462 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:09.954 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:09.954 -07 000000479 INF: FPGA: Recv ZDACR 36473
17-03-18 06:56:09.954 -07 000000462 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:09.954 -07 000000462 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:56:09.964 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:56:09.964 -07 000000455 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 06:56:09.964 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:10.124 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:56:10.124 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:56:10.124 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:10.124 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:10.124 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:56:10.124 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:56:10.124 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:10.124 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:10.124 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:56:10.134 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:56:10.334 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 06:56:10.334 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 06:56:10.394 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:10.394 -07 000000447 INF: FPGA: Recv YRDPOS 149861
17-03-18 06:56:10.404 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:10.404 -07 000000462 INF: Y Motor: Encoder = 149861 = motor step 117078.9 = 73.1743 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:10.404 -07 000000462 INF: Y Motor: Position error before settling (table move) = -37 encoder counts (-0.018 mm)
17-03-18 06:56:10.404 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.211 mm/sec
17-03-18 06:56:11.354 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:11.354 -07 000000461 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:56:11.364 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:11.364 -07 000000462 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:11.394 -07 000000462 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:11.394 -07 000000462 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:56:11.394 -07 000000462 INF: Y Motor: Moved to 73.1748 after 1455 ms (table move)
17-03-18 06:56:11.394 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166963 mm (DAC = 36473)
17-03-18 06:56:11.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.394 -07 000000444 INF: FPGA: Recv ZSGSRD 35281
17-03-18 06:56:11.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:56:11.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.404 -07 000000480 INF: FPGA: Recv ZSGSRD 35277
17-03-18 06:56:11.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.414 -07 000000444 INF: FPGA: Recv ZSGSRD 35277
17-03-18 06:56:11.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.424 -07 000000461 INF: FPGA: Recv ZSGSRD 35284
17-03-18 06:56:11.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.434 -07 000000430 INF: FPGA: Recv ZSGSRD 35276
17-03-18 06:56:11.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.444 -07 000000480 INF: FPGA: Recv ZSGSRD 35280
17-03-18 06:56:11.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.454 -07 000000447 INF: FPGA: Recv ZSGSRD 35279
17-03-18 06:56:11.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.464 -07 000000461 INF: FPGA: Recv ZSGSRD 35280
17-03-18 06:56:11.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.474 -07 000000444 INF: FPGA: Recv ZSGSRD 35281
17-03-18 06:56:11.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.484 -07 000000462 INF: FPGA: Recv ZSGSRD 35280
17-03-18 06:56:11.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:11.494 -07 000000447 INF: FPGA: Recv ZPIEZORD 31003
17-03-18 06:56:11.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.504 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.565 V. Piezo Error = -9.4 V.
17-03-18 06:56:11.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35280 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35280 (-166.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35276 (-166.1 uncal um), Max = 35284 (-166.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:56:11.504 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35280, posNoise = 4, negNoise = 4
17-03-18 06:56:11.504 -07 000000610 INF: Z Motor: After move to -0.166963, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:11.504 -07 000000610 INF: Z Motor: Settle wait time = 1457 ms, measure time = 105 ms (allowed 150 ms), total time = 1562 ms
17-03-18 06:56:11.504 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:11.554 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 06:56:11.554 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:11.554 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.166969556372462. ----------
17-03-18 06:56:11.554 -07 000000610 INF: Cycle	155	Tile	17	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:11.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36297, sync = True, waitForSettling = True)
17-03-18 06:56:11.554 -07 000000610 INF: Z Motor: Moving to -0.166157 mm, started at -0.166970 mm, distance = 0.81 um
17-03-18 06:56:11.554 -07 000000610 INF: FPGA: Xmit ZDACW 36297\n [Z Motor]
17-03-18 06:56:11.554 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:56:11.564 -07 000000610 INF: FPGA: 'ZDACW 36297' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:56:11.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:11.564 -07 000000479 INF: FPGA: Recv ZDACR 36297
17-03-18 06:56:11.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:11.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.724 -07 000000455 INF: FPGA: Recv ZSGSRD 35157
17-03-18 06:56:11.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:11.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.734 -07 000000447 INF: FPGA: Recv ZSGSRD 35157
17-03-18 06:56:11.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.744 -07 000000479 INF: FPGA: Recv ZSGSRD 35149
17-03-18 06:56:11.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.754 -07 000000461 INF: FPGA: Recv ZSGSRD 35154
17-03-18 06:56:11.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.764 -07 000000444 INF: FPGA: Recv ZSGSRD 35156
17-03-18 06:56:11.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.774 -07 000000462 INF: FPGA: Recv ZSGSRD 35151
17-03-18 06:56:11.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.784 -07 000000430 INF: FPGA: Recv ZSGSRD 35153
17-03-18 06:56:11.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.794 -07 000000462 INF: FPGA: Recv ZSGSRD 35152
17-03-18 06:56:11.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.804 -07 000000430 INF: FPGA: Recv ZSGSRD 35155
17-03-18 06:56:11.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:11.824 -07 000000462 INF: FPGA: Recv ZSGSRD 35157
17-03-18 06:56:11.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:56:11.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:11.834 -07 000000447 INF: FPGA: Recv ZPIEZORD 30865
17-03-18 06:56:11.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:11.844 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.4 V.
17-03-18 06:56:11.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35154 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35154 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35149 (-165.3 uncal um), Max = 35157 (-165.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:56:11.844 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35154, posNoise = 3, negNoise = 5
17-03-18 06:56:11.844 -07 000000610 INF: Z Motor: After move to -0.166157, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:11.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-18 06:56:11.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:11.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:11.844 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:11.844 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:11.844 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:11.844 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:11.844 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:11.844 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:11.844 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:11.844 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:11.844 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:56:11.844 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:11.854 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:56:11.854 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:11.854 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:56:11.854 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:11.864 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:56:11.864 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:56:11.864 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 06:56:11.864 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:56:11.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36473 150\n [Camera]
17-03-18 06:56:11.904 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:56:11.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:56:12.064 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:12.134 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.024884,
17-03-18 06:56:12.534 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:12.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:12.534 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:12.534 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:12.534 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2603919736, 0x0, 391868352) start.
17-03-18 06:56:12.534 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:12.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:12.534 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:12.534 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:12.534 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2639342000, 0x0, 418435064) start.
17-03-18 06:56:12.724 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36473 855
17-03-18 06:56:12.874 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:56:12.914 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2639342000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:56:12.914 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:56:12.914 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:12.924 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2603919736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 06:56:12.924 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:56:12.924 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:12.924 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:56:12.924 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:56:12.924 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 06:56:12.934 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:56:13.104 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:13.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:13.104 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:13.104 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:13.104 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 06:56:13.104 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:13.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:13.104 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:13.104 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:13.104 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 06:56:13.294 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:56:13.294 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:13.294 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36473 150' command took 2 ms to send, 1426 ms to get response, and 1430 ms overall
17-03-18 06:56:13.294 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.166102
17-03-18 06:56:13.294 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16610 mm
17-03-18 06:56:13.294 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:13.424 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 36285, sync = True, waitForSettling = False)
17-03-18 06:56:13.424 -07 000000461 INF: Z Motor: Moving to -0.166102 mm, started at -0.166160 mm, distance = 0.06 um
17-03-18 06:56:13.424 -07 000000461 INF: FPGA: Xmit ZDACW 36285\n [Z Motor]
17-03-18 06:56:13.424 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:56:13.424 -07 000000447 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 06:56:13.434 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:13.484 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:56:13.484 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:56:13.484 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:13.494 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:13.494 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:56:13.494 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 06:56:13.494 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 06:56:13.494 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:13.494 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:13.504 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:56:13.504 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:56:13.504 -07 000000444 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:56:13.504 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 62 ms to get response, and 78 ms overall
17-03-18 06:56:13.504 -07 000000447 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:13.504 -07 000000447 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:13.504 -07 000000447 INF: Y Motor: Moving 1356 steps-37
17-03-18 06:56:13.504 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:13.504 -07 000000461 INF: FPGA: 'ZDACW 36285' command took 0 ms to send, 72 ms to get response, and 78 ms overall
17-03-18 06:56:13.514 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:13.514 -07 000000585 INF: FPGA: Recv ZDACR 36285
17-03-18 06:56:13.524 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:56:13.524 -07 000000461 INF: Z Motor: MoveAbsStepped took 97 ms (did NOT wait for settling yet))
17-03-18 06:56:13.884 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:56:13.884 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-18 06:56:13.924 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:13.924 -07 000000461 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:56:13.934 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:56:13.934 -07 000000447 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:13.934 -07 000000447 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 06:56:13.934 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.848 mm, average velocity = 2.243 mm/sec
17-03-18 06:56:14.884 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:14.884 -07 000000591 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:56:14.894 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:14.894 -07 000000447 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:14.914 -07 000000447 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:14.914 -07 000000447 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:56:14.914 -07 000000447 INF: Y Motor: Moved to 74.0068 after 1490 ms (table move)
17-03-18 06:56:14.914 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166102 mm (DAC = 36285)
17-03-18 06:56:14.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:14.924 -07 000000437 INF: FPGA: Recv ZSGSRD 35148
17-03-18 06:56:14.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:56:14.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:14.924 -07 000000626 INF: FPGA: Recv ZSGSRD 35143
17-03-18 06:56:14.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:14.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:14.934 -07 000000576 INF: FPGA: Recv ZSGSRD 35142
17-03-18 06:56:14.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:14.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:14.944 -07 000000437 INF: FPGA: Recv ZSGSRD 35151
17-03-18 06:56:14.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:14.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:14.954 -07 000000576 INF: FPGA: Recv ZSGSRD 35143
17-03-18 06:56:14.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:14.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:14.964 -07 000000626 INF: FPGA: Recv ZSGSRD 35152
17-03-18 06:56:14.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:14.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:14.974 -07 000000576 INF: FPGA: Recv ZSGSRD 35145
17-03-18 06:56:14.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:14.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:14.984 -07 000000626 INF: FPGA: Recv ZSGSRD 35139
17-03-18 06:56:14.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:14.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:14.994 -07 000000447 INF: FPGA: Recv ZSGSRD 35144
17-03-18 06:56:15.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:15.004 -07 000000626 INF: FPGA: Recv ZSGSRD 35138
17-03-18 06:56:15.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:15.014 -07 000000585 INF: FPGA: Recv ZPIEZORD 30899
17-03-18 06:56:15.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.024 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.537 V. Piezo Error = -9.4 V.
17-03-18 06:56:15.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35144 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35144 (-165.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35138 (-165.2 uncal um), Max = 35152 (-165.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:56:15.024 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35144, posNoise = 8, negNoise = 6
17-03-18 06:56:15.024 -07 000000610 INF: Z Motor: After move to -0.166102, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:15.024 -07 000000610 INF: Z Motor: Settle wait time = 1494 ms, measure time = 103 ms (allowed 150 ms), total time = 1597 ms
17-03-18 06:56:15.024 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:15.074 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1771 ms
17-03-18 06:56:15.074 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:15.074 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.166095863521182. ----------
17-03-18 06:56:15.074 -07 000000610 INF: Cycle	155	Tile	18	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:15.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36108, sync = True, waitForSettling = True)
17-03-18 06:56:15.074 -07 000000610 INF: Z Motor: Moving to -0.165292 mm, started at -0.166096 mm, distance = 0.80 um
17-03-18 06:56:15.074 -07 000000610 INF: FPGA: Xmit ZDACW 36108\n [Z Motor]
17-03-18 06:56:15.074 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:56:15.084 -07 000000610 INF: FPGA: 'ZDACW 36108' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:56:15.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:15.084 -07 000000606 INF: FPGA: Recv ZDACR 36108
17-03-18 06:56:15.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:15.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:15.244 -07 000000444 INF: FPGA: Recv ZSGSRD 35016
17-03-18 06:56:15.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:15.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:15.254 -07 000000606 INF: FPGA: Recv ZSGSRD 35024
17-03-18 06:56:15.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:15.264 -07 000000461 INF: FPGA: Recv ZSGSRD 35023
17-03-18 06:56:15.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:15.274 -07 000000626 INF: FPGA: Recv ZSGSRD 35021
17-03-18 06:56:15.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:15.284 -07 000000585 INF: FPGA: Recv ZSGSRD 35021
17-03-18 06:56:15.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:15.294 -07 000000626 INF: FPGA: Recv ZSGSRD 35020
17-03-18 06:56:15.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:15.304 -07 000000480 INF: FPGA: Recv ZSGSRD 35024
17-03-18 06:56:15.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:15.314 -07 000000626 INF: FPGA: Recv ZSGSRD 35016
17-03-18 06:56:15.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:15.324 -07 000000480 INF: FPGA: Recv ZSGSRD 35017
17-03-18 06:56:15.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:15.334 -07 000000626 INF: FPGA: Recv ZSGSRD 35021
17-03-18 06:56:15.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:15.344 -07 000000585 INF: FPGA: Recv ZPIEZORD 30714
17-03-18 06:56:15.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:15.354 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.510 V. Piezo Error = -9.5 V.
17-03-18 06:56:15.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35020 (-164.4 uncal um), Error = 0.9 uncal um, Median = 35021 (-164.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35016 (-164.4 uncal um), Max = 35024 (-164.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:56:15.354 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35020, posNoise = 4, negNoise = 4
17-03-18 06:56:15.354 -07 000000610 INF: Z Motor: After move to -0.165292, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:15.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:56:15.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:15.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:15.354 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:15.354 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:15.354 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:15.354 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:15.354 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:15.354 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:15.354 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:56:15.354 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:15.354 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:15.354 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:15.364 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:56:15.364 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:15.364 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:56:15.364 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:15.374 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:56:15.374 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:56:15.374 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:56:15.374 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:56:15.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36285 150\n [Camera]
17-03-18 06:56:15.574 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:16.054 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:16.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:16.054 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:16.054 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:16.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:16.054 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:16.054 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:16.054 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 06:56:16.054 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:16.064 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:56:16.244 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36285 855
17-03-18 06:56:16.394 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:56:16.434 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:56:16.434 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 06:56:16.434 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:16.434 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:56:16.434 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 06:56:16.434 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:16.434 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:16.434 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:56:16.434 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:16.444 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:56:16.614 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:16.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:16.624 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:16.624 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:16.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:16.624 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:16.624 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:16.624 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:56:16.624 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:16.624 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:56:16.814 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:56:16.814 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:16.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36285 150' command took 2 ms to send, 1423 ms to get response, and 1433 ms overall
17-03-18 06:56:16.814 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.165548
17-03-18 06:56:16.814 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16555 mm
17-03-18 06:56:16.814 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:16.814 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 36164, sync = True, waitForSettling = False)
17-03-18 06:56:16.814 -07 000000430 INF: Z Motor: Moving to -0.165548 mm, started at -0.165299 mm, distance = -0.25 um
17-03-18 06:56:16.824 -07 000000430 INF: FPGA: Xmit ZDACW 36164\n [Z Motor]
17-03-18 06:56:16.824 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:56:16.824 -07 000000444 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 06:56:16.824 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:56:16.834 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:16.834 -07 000000430 INF: FPGA: 'ZDACW 36164' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:16.834 -07 000000576 INF: FPGA: Recv YRDPOS 151566
17-03-18 06:56:16.844 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:56:16.844 -07 000000444 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:16.844 -07 000000444 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:16.844 -07 000000444 INF: Y Motor: Moving 1353 steps-32
17-03-18 06:56:16.844 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:16.854 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:16.854 -07 000000437 INF: FPGA: Recv ZDACR 36164
17-03-18 06:56:16.864 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:56:16.864 -07 000000430 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 06:56:16.904 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:56:16.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:56:17.004 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 06:56:17.004 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:56:17.004 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:17.004 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:56:17.004 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:56:17.004 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:17.004 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:17.014 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:17.014 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:56:17.014 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:56:17.214 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 06:56:17.224 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 380 ms overall
17-03-18 06:56:17.254 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:17.254 -07 000000480 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:56:17.264 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:56:17.264 -07 000000444 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:17.264 -07 000000444 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 06:56:17.264 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.846 mm, average velocity = 2.226 mm/sec
17-03-18 06:56:17.494 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.994908,
17-03-18 06:56:18.214 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:18.214 -07 000000606 INF: FPGA: Recv YRDPOS 153253
17-03-18 06:56:18.224 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:18.224 -07 000000444 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:18.244 -07 000000444 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:18.244 -07 000000444 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:56:18.244 -07 000000444 INF: Y Motor: Moved to 74.8306 after 1421 ms (table move)
17-03-18 06:56:18.244 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.165548 mm (DAC = 36164)
17-03-18 06:56:18.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.244 -07 000000480 INF: FPGA: Recv ZSGSRD 35063
17-03-18 06:56:18.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:56:18.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.254 -07 000000444 INF: FPGA: Recv ZSGSRD 35059
17-03-18 06:56:18.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.264 -07 000000480 INF: FPGA: Recv ZSGSRD 35064
17-03-18 06:56:18.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.274 -07 000000480 INF: FPGA: Recv ZSGSRD 35063
17-03-18 06:56:18.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.284 -07 000000444 INF: FPGA: Recv ZSGSRD 35064
17-03-18 06:56:18.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.294 -07 000000626 INF: FPGA: Recv ZSGSRD 35059
17-03-18 06:56:18.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.304 -07 000000626 INF: FPGA: Recv ZSGSRD 35060
17-03-18 06:56:18.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.314 -07 000000626 INF: FPGA: Recv ZSGSRD 35063
17-03-18 06:56:18.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.324 -07 000000626 INF: FPGA: Recv ZSGSRD 35057
17-03-18 06:56:18.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.334 -07 000000444 INF: FPGA: Recv ZSGSRD 35057
17-03-18 06:56:18.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:18.344 -07 000000626 INF: FPGA: Recv ZPIEZORD 30802
17-03-18 06:56:18.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.354 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.518 V. Piezo Error = -9.4 V.
17-03-18 06:56:18.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35061 (-164.7 uncal um), Error = 0.8 uncal um, Median = 35062 (-164.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35057 (-164.7 uncal um), Max = 35064 (-164.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:56:18.354 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35061, posNoise = 3, negNoise = 4
17-03-18 06:56:18.354 -07 000000610 INF: Z Motor: After move to -0.165548, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:18.354 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 107 ms (allowed 150 ms), total time = 1531 ms
17-03-18 06:56:18.354 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:18.404 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-18 06:56:18.404 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:18.404 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.165562653913416. ----------
17-03-18 06:56:18.404 -07 000000610 INF: Cycle	155	Tile	19	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:18.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35987, sync = True, waitForSettling = True)
17-03-18 06:56:18.404 -07 000000610 INF: Z Motor: Moving to -0.164738 mm, started at -0.165563 mm, distance = 0.82 um
17-03-18 06:56:18.404 -07 000000610 INF: FPGA: Xmit ZDACW 35987\n [Z Motor]
17-03-18 06:56:18.404 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:56:18.414 -07 000000610 INF: FPGA: 'ZDACW 35987' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:56:18.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:18.414 -07 000000462 INF: FPGA: Recv ZDACR 35987
17-03-18 06:56:18.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:18.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.574 -07 000000455 INF: FPGA: Recv ZSGSRD 34933
17-03-18 06:56:18.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.584 -07 000000626 INF: FPGA: Recv ZSGSRD 34931
17-03-18 06:56:18.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.594 -07 000000606 INF: FPGA: Recv ZSGSRD 34941
17-03-18 06:56:18.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.604 -07 000000455 INF: FPGA: Recv ZSGSRD 34929
17-03-18 06:56:18.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.614 -07 000000606 INF: FPGA: Recv ZSGSRD 34937
17-03-18 06:56:18.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.624 -07 000000455 INF: FPGA: Recv ZSGSRD 34938
17-03-18 06:56:18.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.634 -07 000000606 INF: FPGA: Recv ZSGSRD 34933
17-03-18 06:56:18.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.644 -07 000000455 INF: FPGA: Recv ZSGSRD 34940
17-03-18 06:56:18.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.654 -07 000000606 INF: FPGA: Recv ZSGSRD 34933
17-03-18 06:56:18.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:18.664 -07 000000444 INF: FPGA: Recv ZSGSRD 34935
17-03-18 06:56:18.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:18.674 -07 000000480 INF: FPGA: Recv ZPIEZORD 30623
17-03-18 06:56:18.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:18.684 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.491 V. Piezo Error = -9.5 V.
17-03-18 06:56:18.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34935 (-163.9 uncal um), Error = 0.8 uncal um, Median = 34934 (-163.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34929 (-163.9 uncal um), Max = 34941 (-163.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:56:18.684 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34935, posNoise = 6, negNoise = 6
17-03-18 06:56:18.684 -07 000000610 INF: Z Motor: After move to -0.164738, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:18.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:56:18.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:18.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:18.684 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:18.684 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:18.684 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:18.684 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:18.684 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:18.684 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:18.684 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:18.684 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:18.684 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:56:18.684 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:18.694 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:56:18.694 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:18.694 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:56:18.694 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:18.704 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:56:18.704 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:56:18.704 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:56:18.704 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:56:18.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36164 150\n [Camera]
17-03-18 06:56:18.904 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:19.374 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:19.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:19.374 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:19.374 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:19.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:19.384 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:19.384 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:19.384 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:56:19.384 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:19.384 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:56:19.564 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36164 855
17-03-18 06:56:19.714 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1006
17-03-18 06:56:19.754 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 06:56:19.754 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 06:56:19.754 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:19.754 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:56:19.754 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:56:19.754 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:19.754 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:19.754 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:56:19.764 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:19.764 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:56:19.944 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:19.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:19.944 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:19.944 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:19.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:19.944 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:19.944 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:19.954 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 06:56:19.954 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:19.954 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:56:20.134 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:56:20.134 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:20.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36164 150' command took 2 ms to send, 1424 ms to get response, and 1430 ms overall
17-03-18 06:56:20.324 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 06:56:20.324 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:56:20.324 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:20.324 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:56:20.324 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:56:20.324 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:20.334 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:20.334 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:20.334 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:56:20.334 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:56:20.334 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:56:20.374 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 06:56:20.374 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:56:20.414 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 06:56:20.414 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 06:56:20.414 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:56:20.424 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-18 06:56:20.424 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:56:20.424 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 06:56:20.924 -07 000000012 INF: FPGA: Recv EMIN
17-03-18 06:56:20.924 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-18 06:56:20.924 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 06:56:20.924 -07 000000606 INF: FPGA: Recv EMCUR 
17-03-18 06:56:20.934 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:56:20.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:56:20.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164753203183554. ------
17-03-18 06:56:20.934 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:56:20.934 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13920 mm
17-03-18 06:56:20.934 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:20.944 -07 000000479 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:56:20.944 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 30409, sync = True, waitForSettling = False)
17-03-18 06:56:20.944 -07 000000585 INF: Z Motor: Moving to -0.139203 mm, started at -0.164753 mm, distance = 25.55 um
17-03-18 06:56:20.944 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:56:20.944 -07 000000591 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 06:56:20.944 -07 000000585 INF: FPGA: Xmit ZDACW 30409\n [Z Motor]
17-03-18 06:56:20.944 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:56:20.944 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:56:20.954 -07 000000585 INF: FPGA: 'ZDACW 30409' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:56:20.954 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:20.954 -07 000000462 INF: FPGA: Recv ZDACR 30409
17-03-18 06:56:20.964 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:20.964 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:20.964 -07 000000585 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-18 06:56:20.964 -07 000000012 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:56:20.974 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:56:20.974 -07 000000591 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:20.974 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:56:20.974 -07 000000591 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 06:56:20.974 -07 000000591 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:56:20.984 -07 000000591 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:56:21.174 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:56:21.174 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 196 ms to get response, and 233 ms overall
17-03-18 06:56:21.904 -07 000000479 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:56:21.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:56:22.604 -07 000000455 INF: FPGA: Recv YMVTO 122702 23903
17-03-18 06:56:22.604 -07 000000591 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1633 ms overall
17-03-18 06:56:22.604 -07 000000591 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-18 06:56:22.604 -07 000000591 INF: Y Motor: To move from 74.831 to 59.913 (-14.918 mm) should take 23870 steps, but required 23903 steps (14.939 mm). Slippage = 0.021 mm (0.00%).
17-03-18 06:56:22.604 -07 000000591 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1633 ms, distance = 14.918 mm, average velocity = 9.135 mm/sec
17-03-18 06:56:22.854 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.011254,
17-03-18 06:56:25.464 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:25.464 -07 000000585 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:56:25.474 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:25.474 -07 000000591 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:25.514 -07 000000591 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:25.514 -07 000000591 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 06:56:25.514 -07 000000591 INF: Y Motor: Moved to 59.9102 after 4570 ms
17-03-18 06:56:25.514 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139203 mm (DAC = 30409)
17-03-18 06:56:25.514 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:25.524 -07 000000585 INF: FPGA: Recv ZSGSRD 30962
17-03-18 06:56:25.524 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:56:25.524 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:25.524 -07 000000585 INF: FPGA: Recv ZSGSRD 30963
17-03-18 06:56:25.534 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:56:25.534 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:25.534 -07 000000591 INF: FPGA: Recv ZSGSRD 30958
17-03-18 06:56:25.544 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:25.544 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:25.544 -07 000000591 INF: FPGA: Recv ZSGSRD 30960
17-03-18 06:56:25.554 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:25.554 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:25.554 -07 000000585 INF: FPGA: Recv ZSGSRD 30958
17-03-18 06:56:25.564 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:25.564 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:25.564 -07 000000591 INF: FPGA: Recv ZSGSRD 30963
17-03-18 06:56:25.574 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:25.574 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:25.574 -07 000000585 INF: FPGA: Recv ZSGSRD 30960
17-03-18 06:56:25.584 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:25.584 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:25.584 -07 000000591 INF: FPGA: Recv ZSGSRD 30954
17-03-18 06:56:25.594 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:25.594 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:25.594 -07 000000591 INF: FPGA: Recv ZSGSRD 30960
17-03-18 06:56:25.604 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:25.604 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:25.604 -07 000000461 INF: FPGA: Recv ZSGSRD 30958
17-03-18 06:56:25.614 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:25.614 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:25.614 -07 000000430 INF: FPGA: Recv ZPIEZORD 26405
17-03-18 06:56:25.624 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:25.624 -07 000000606 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -10.0 V.
17-03-18 06:56:25.624 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30960 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30960 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30954 (-138.4 uncal um), Max = 30963 (-138.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:56:25.624 -07 000000606 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30960, posNoise = 3, negNoise = 6
17-03-18 06:56:25.624 -07 000000606 INF: Z Motor: After move to -0.139203, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:25.624 -07 000000606 INF: Z Motor: Settle wait time = 4575 ms, measure time = 103 ms (allowed 150 ms), total time = 4678 ms
17-03-18 06:56:25.624 -07 000000606 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:25.674 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4731 ms
17-03-18 06:56:25.674 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:25.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:25.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:25.674 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:25.674 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:25.674 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:56:25.674 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:25.674 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:25.674 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:56:25.704 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 06:56:25.704 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:56:25.704 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:56:25.704 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:56:25.724 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 06:56:25.724 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 06:56:25.724 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:56:25.764 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:56:26.064 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:56:26.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:56:26.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:56:26.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-18 06:56:26.104 -07 000000447 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:56:26.104 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 06:56:26.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 06:56:26.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:56:26.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:26.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:56:26.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 06:56:26.204 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:56:26.204 -07 000000585 INF: Image SNR check: start
17-03-18 06:56:26.204 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:56:26.214 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:56:26.214 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:56:26.224 -07 000000585 INF: Image SNR check: pass  [peak (Max-Min)=109.45]
17-03-18 06:56:26.224 -07 000000585 INF: Autofocus start
17-03-18 06:56:26.224 -07 000000585 INF: MeasureProfile start
17-03-18 06:56:26.234 -07 000000585 INF: MeasureProfile done
17-03-18 06:56:26.234 -07 000000585 INF: X=48  Z correction [um]=0.2069503
17-03-18 06:56:26.234 -07 000000585 INF: Autofocus finished
17-03-18 06:56:26.414 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:56:26.414 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-18 06:56:26.424 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.139216959920054. ----------
17-03-18 06:56:26.424 -07 000000610 INF: Cycle	155	Tile	1	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:26.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28967, sync = True, waitForSettling = True)
17-03-18 06:56:26.424 -07 000000610 INF: Z Motor: Moving to -0.132602 mm, started at -0.139217 mm, distance = 6.61 um
17-03-18 06:56:26.424 -07 000000610 INF: FPGA: Xmit ZDACW 28967\n [Z Motor]
17-03-18 06:56:26.424 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:56:26.434 -07 000000610 INF: FPGA: 'ZDACW 28967' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:56:26.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:26.434 -07 000000437 INF: FPGA: Recv ZDACR 28967
17-03-18 06:56:26.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:26.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:26.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:26.594 -07 000000447 INF: FPGA: Recv ZSGSRD 29929
17-03-18 06:56:26.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:26.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:26.604 -07 000000444 INF: FPGA: Recv ZSGSRD 29933
17-03-18 06:56:26.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:26.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:26.614 -07 000000447 INF: FPGA: Recv ZSGSRD 29935
17-03-18 06:56:26.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:26.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:26.624 -07 000000461 INF: FPGA: Recv ZSGSRD 29924
17-03-18 06:56:26.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:26.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:26.634 -07 000000479 INF: FPGA: Recv ZSGSRD 29932
17-03-18 06:56:26.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:26.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:26.644 -07 000000606 INF: FPGA: Recv ZSGSRD 29932
17-03-18 06:56:26.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:26.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:26.654 -07 000000479 INF: FPGA: Recv ZSGSRD 29928
17-03-18 06:56:26.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:26.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:26.664 -07 000000585 INF: FPGA: Recv ZSGSRD 29936
17-03-18 06:56:26.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:26.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:26.674 -07 000000447 INF: FPGA: Recv ZSGSRD 29929
17-03-18 06:56:26.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:26.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:26.684 -07 000000585 INF: FPGA: Recv ZSGSRD 29931
17-03-18 06:56:26.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:26.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:26.694 -07 000000447 INF: FPGA: Recv ZPIEZORD 25343
17-03-18 06:56:26.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:26.704 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.420 V. Piezo Error = -10.1 V.
17-03-18 06:56:26.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29931 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29932 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29924 (-131.8 uncal um), Max = 29936 (-131.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:56:26.704 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29931, posNoise = 5, negNoise = 7
17-03-18 06:56:26.704 -07 000000610 INF: Z Motor: After move to -0.132602, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:26.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:56:26.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:26.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:26.704 -07 000000479 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:26.704 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:26.704 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:26.704 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:26.704 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:26.704 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:26.704 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:56:26.704 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:56:26.704 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:26.704 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:26.714 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:56:26.714 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:26.714 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:56:26.714 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:56:26.724 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 06:56:26.724 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:26.734 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:56:26.734 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:26.734 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:56:26.734 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 06:56:26.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 29144 150\n [Camera]
17-03-18 06:56:26.904 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:56:26.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:56:26.944 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:27.414 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:27.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:27.414 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:27.414 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:27.414 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:56:27.414 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:27.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:27.414 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:27.414 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:27.414 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) start.
17-03-18 06:56:27.604 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29144 855
17-03-18 06:56:27.754 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:56:27.794 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:56:27.794 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:56:27.794 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:27.794 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:56:27.794 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 06:56:27.794 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:27.794 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:56:27.794 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:56:27.804 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:56:27.804 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:56:27.984 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:27.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:27.984 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:28.094 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:28.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:28.094 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:28.104 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:28.104 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 06:56:28.104 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:28.104 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:56:28.174 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:56:28.174 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:28.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 29144 150' command took 2 ms to send, 1422 ms to get response, and 1431 ms overall
17-03-18 06:56:28.174 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133001
17-03-18 06:56:28.174 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13300 mm
17-03-18 06:56:28.174 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:28.174 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:56:28.174 -07 000000591 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 06:56:28.174 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:28.174 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29054, sync = True, waitForSettling = False)
17-03-18 06:56:28.174 -07 000000462 INF: Z Motor: Moving to -0.133001 mm, started at -0.132606 mm, distance = -0.39 um
17-03-18 06:56:28.184 -07 000000462 INF: FPGA: Xmit ZDACW 29054\n [Z Motor]
17-03-18 06:56:28.184 -07 000000626 INF: FPGA: Recv YRDPOS 122696
17-03-18 06:56:28.184 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:56:28.184 -07 000000591 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:28.184 -07 000000591 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:28.184 -07 000000591 INF: Y Motor: Moving 1332 steps1
17-03-18 06:56:28.184 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:56:28.194 -07 000000462 INF: FPGA: 'ZDACW 29054' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:56:28.194 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:28.194 -07 000000430 INF: FPGA: Recv ZDACR 29054
17-03-18 06:56:28.204 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:28.204 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:28.204 -07 000000462 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 06:56:28.224 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.003063,
17-03-18 06:56:28.484 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:56:28.484 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:56:28.484 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:28.484 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:28.484 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 06:56:28.484 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:56:28.484 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:28.494 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:28.494 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-18 06:56:28.494 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:56:28.574 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 06:56:28.574 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:56:28.624 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:28.624 -07 000000430 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:56:28.634 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:28.634 -07 000000591 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:28.634 -07 000000591 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:56:28.634 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.092 mm/sec
17-03-18 06:56:29.584 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:29.584 -07 000000430 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:56:29.594 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.594 -07 000000591 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:29.624 -07 000000591 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:29.624 -07 000000591 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:56:29.624 -07 000000591 INF: Y Motor: Moved to 60.7324 after 1449 ms (table move)
17-03-18 06:56:29.624 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133001 mm (DAC = 29054)
17-03-18 06:56:29.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.634 -07 000000462 INF: FPGA: Recv ZSGSRD 29988
17-03-18 06:56:29.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:56:29.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.634 -07 000000430 INF: FPGA: Recv ZSGSRD 29997
17-03-18 06:56:29.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:56:29.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.644 -07 000000430 INF: FPGA: Recv ZSGSRD 29991
17-03-18 06:56:29.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.654 -07 000000591 INF: FPGA: Recv ZSGSRD 29987
17-03-18 06:56:29.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.664 -07 000000462 INF: FPGA: Recv ZSGSRD 29992
17-03-18 06:56:29.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.674 -07 000000462 INF: FPGA: Recv ZSGSRD 29986
17-03-18 06:56:29.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.684 -07 000000591 INF: FPGA: Recv ZSGSRD 29995
17-03-18 06:56:29.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.694 -07 000000462 INF: FPGA: Recv ZSGSRD 30002
17-03-18 06:56:29.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.704 -07 000000480 INF: FPGA: Recv ZSGSRD 29992
17-03-18 06:56:29.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.714 -07 000000480 INF: FPGA: Recv ZSGSRD 29993
17-03-18 06:56:29.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:29.724 -07 000000480 INF: FPGA: Recv ZPIEZORD 25494
17-03-18 06:56:29.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.734 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.433 V. Piezo Error = -9.9 V.
17-03-18 06:56:29.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29992 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29992 (-132.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29986 (-132.2 uncal um), Max = 30002 (-132.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:56:29.734 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29992, posNoise = 10, negNoise = 6
17-03-18 06:56:29.734 -07 000000610 INF: Z Motor: After move to -0.133001, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:29.734 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 101 ms (allowed 150 ms), total time = 1552 ms
17-03-18 06:56:29.734 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:29.784 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 06:56:29.784 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:29.784 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.13299832256683. ----------
17-03-18 06:56:29.784 -07 000000610 INF: Cycle	155	Tile	2	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:29.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28877, sync = True, waitForSettling = True)
17-03-18 06:56:29.784 -07 000000610 INF: Z Motor: Moving to -0.132190 mm, started at -0.132998 mm, distance = 0.81 um
17-03-18 06:56:29.784 -07 000000610 INF: FPGA: Xmit ZDACW 28877\n [Z Motor]
17-03-18 06:56:29.784 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:56:29.794 -07 000000610 INF: FPGA: 'ZDACW 28877' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:56:29.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:29.794 -07 000000591 INF: FPGA: Recv ZDACR 28877
17-03-18 06:56:29.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:29.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.954 -07 000000461 INF: FPGA: Recv ZSGSRD 29869
17-03-18 06:56:29.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:29.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.964 -07 000000447 INF: FPGA: Recv ZSGSRD 29865
17-03-18 06:56:29.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.974 -07 000000462 INF: FPGA: Recv ZSGSRD 29864
17-03-18 06:56:29.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.984 -07 000000479 INF: FPGA: Recv ZSGSRD 29865
17-03-18 06:56:29.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:29.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:29.994 -07 000000430 INF: FPGA: Recv ZSGSRD 29866
17-03-18 06:56:30.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:30.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:30.004 -07 000000480 INF: FPGA: Recv ZSGSRD 29867
17-03-18 06:56:30.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:30.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:30.014 -07 000000462 INF: FPGA: Recv ZSGSRD 29867
17-03-18 06:56:30.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:30.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:30.024 -07 000000480 INF: FPGA: Recv ZSGSRD 29868
17-03-18 06:56:30.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:30.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:30.034 -07 000000462 INF: FPGA: Recv ZSGSRD 29868
17-03-18 06:56:30.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:30.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:30.044 -07 000000479 INF: FPGA: Recv ZSGSRD 29863
17-03-18 06:56:30.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:30.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:30.054 -07 000000480 INF: FPGA: Recv ZPIEZORD 25334
17-03-18 06:56:30.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:30.064 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -9.9 V.
17-03-18 06:56:30.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29866 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29866 (-131.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29863 (-131.4 uncal um), Max = 29869 (-131.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:56:30.064 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29866, posNoise = 3, negNoise = 3
17-03-18 06:56:30.064 -07 000000610 INF: Z Motor: After move to -0.132190, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:30.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:56:30.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:30.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:30.064 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:30.064 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:30.064 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:30.064 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:30.064 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:30.064 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:30.064 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:30.064 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:30.064 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:56:30.064 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:30.074 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:56:30.074 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:30.074 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:56:30.074 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:30.084 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:56:30.084 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:56:30.084 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:56:30.084 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:56:30.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 29054 150\n [Camera]
17-03-18 06:56:30.284 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:30.754 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:30.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:30.754 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:30.764 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:30.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:30.764 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:30.764 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:30.764 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:56:30.764 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:30.764 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:56:30.954 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29054 855
17-03-18 06:56:31.104 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:56:31.164 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 06:56:31.164 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:56:31.164 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:31.164 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:56:31.164 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:56:31.164 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:31.164 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:31.164 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:56:31.164 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:31.174 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:56:31.324 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:31.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:31.324 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:31.324 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:31.324 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2603919736, 0x0, 391868352) start.
17-03-18 06:56:31.334 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:31.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:31.444 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:31.454 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:31.454 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 06:56:31.524 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1425
17-03-18 06:56:31.524 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:31.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 29054 150' command took 2 ms to send, 1421 ms to get response, and 1432 ms overall
17-03-18 06:56:31.524 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133105
17-03-18 06:56:31.524 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13311 mm
17-03-18 06:56:31.524 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:31.524 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:56:31.524 -07 000000447 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 06:56:31.524 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 29077, sync = True, waitForSettling = False)
17-03-18 06:56:31.524 -07 000000585 INF: Z Motor: Moving to -0.133106 mm, started at -0.132189 mm, distance = -0.92 um
17-03-18 06:56:31.524 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:31.524 -07 000000479 INF: FPGA: Recv YRDPOS 124380
17-03-18 06:56:31.534 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:56:31.534 -07 000000447 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:31.534 -07 000000447 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:31.534 -07 000000447 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:56:31.534 -07 000000585 INF: FPGA: Xmit ZDACW 29077\n [Z Motor]
17-03-18 06:56:31.534 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:56:31.544 -07 000000585 INF: FPGA: 'ZDACW 29077' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:56:31.544 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:31.544 -07 000000626 INF: FPGA: Recv ZDACR 29077
17-03-18 06:56:31.554 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:31.554 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:31.554 -07 000000585 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 06:56:31.724 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2603919736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 06:56:31.724 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:56:31.724 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:31.724 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:31.724 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:56:31.844 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 06:56:31.844 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:56:31.844 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:31.844 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 06:56:31.854 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 06:56:31.904 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:56:31.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:56:31.924 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 06:56:31.924 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:56:31.974 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:31.984 -07 000000461 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:56:31.984 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:56:31.984 -07 000000447 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:31.984 -07 000000447 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 06:56:31.984 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 06:56:32.934 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:32.934 -07 000000479 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:56:32.944 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:32.944 -07 000000447 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:32.974 -07 000000447 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:32.974 -07 000000447 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:56:32.974 -07 000000447 INF: Y Motor: Moved to 61.5630 after 1447 ms (table move)
17-03-18 06:56:32.974 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133106 mm (DAC = 29077)
17-03-18 06:56:32.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:32.984 -07 000000455 INF: FPGA: Recv ZSGSRD 30002
17-03-18 06:56:32.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 06:56:32.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:32.984 -07 000000585 INF: FPGA: Recv ZSGSRD 30005
17-03-18 06:56:32.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:56:32.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:32.994 -07 000000585 INF: FPGA: Recv ZSGSRD 30009
17-03-18 06:56:33.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.004 -07 000000585 INF: FPGA: Recv ZSGSRD 30015
17-03-18 06:56:33.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.014 -07 000000585 INF: FPGA: Recv ZSGSRD 30009
17-03-18 06:56:33.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.024 -07 000000585 INF: FPGA: Recv ZSGSRD 30002
17-03-18 06:56:33.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.034 -07 000000585 INF: FPGA: Recv ZSGSRD 30012
17-03-18 06:56:33.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.044 -07 000000447 INF: FPGA: Recv ZSGSRD 30008
17-03-18 06:56:33.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.054 -07 000000447 INF: FPGA: Recv ZSGSRD 30013
17-03-18 06:56:33.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.064 -07 000000585 INF: FPGA: Recv ZSGSRD 30012
17-03-18 06:56:33.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:33.074 -07 000000447 INF: FPGA: Recv ZPIEZORD 25562
17-03-18 06:56:33.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.084 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -9.8 V.
17-03-18 06:56:33.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30009 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30009 (-132.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30002 (-132.3 uncal um), Max = 30015 (-132.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:56:33.084 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30009, posNoise = 6, negNoise = 7
17-03-18 06:56:33.084 -07 000000610 INF: Z Motor: After move to -0.133106, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:33.084 -07 000000610 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-18 06:56:33.084 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:33.134 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 06:56:33.134 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:33.134 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.13310753417324. ----------
17-03-18 06:56:33.134 -07 000000610 INF: Cycle	155	Tile	3	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:33.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28900, sync = True, waitForSettling = True)
17-03-18 06:56:33.134 -07 000000610 INF: Z Motor: Moving to -0.132296 mm, started at -0.133108 mm, distance = 0.81 um
17-03-18 06:56:33.134 -07 000000610 INF: FPGA: Xmit ZDACW 28900\n [Z Motor]
17-03-18 06:56:33.134 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:56:33.144 -07 000000610 INF: FPGA: 'ZDACW 28900' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:56:33.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:33.144 -07 000000585 INF: FPGA: Recv ZDACR 28900
17-03-18 06:56:33.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:33.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.304 -07 000000585 INF: FPGA: Recv ZSGSRD 29888
17-03-18 06:56:33.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:33.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.314 -07 000000447 INF: FPGA: Recv ZSGSRD 29886
17-03-18 06:56:33.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.324 -07 000000585 INF: FPGA: Recv ZSGSRD 29882
17-03-18 06:56:33.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.334 -07 000000447 INF: FPGA: Recv ZSGSRD 29886
17-03-18 06:56:33.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.344 -07 000000585 INF: FPGA: Recv ZSGSRD 29877
17-03-18 06:56:33.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.354 -07 000000447 INF: FPGA: Recv ZSGSRD 29884
17-03-18 06:56:33.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.364 -07 000000585 INF: FPGA: Recv ZSGSRD 29884
17-03-18 06:56:33.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.374 -07 000000585 INF: FPGA: Recv ZSGSRD 29889
17-03-18 06:56:33.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.384 -07 000000585 INF: FPGA: Recv ZSGSRD 29884
17-03-18 06:56:33.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:33.394 -07 000000455 INF: FPGA: Recv ZSGSRD 29882
17-03-18 06:56:33.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:33.404 -07 000000447 INF: FPGA: Recv ZPIEZORD 25377
17-03-18 06:56:33.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:33.414 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.9 V.
17-03-18 06:56:33.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29884 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29884 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29877 (-131.5 uncal um), Max = 29889 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:56:33.414 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29884, posNoise = 5, negNoise = 7
17-03-18 06:56:33.414 -07 000000610 INF: Z Motor: After move to -0.132296, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:33.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:56:33.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:33.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:33.414 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:33.414 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:33.414 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:33.414 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:33.414 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:33.414 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:33.414 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:56:33.414 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:33.414 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:33.414 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:33.424 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:56:33.424 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:33.424 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:56:33.424 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:33.434 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:56:33.434 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:56:33.434 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:56:33.434 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:56:33.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 29077 150\n [Camera]
17-03-18 06:56:33.634 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:33.864 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.993549,
17-03-18 06:56:34.104 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:34.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:34.114 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:34.114 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:34.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:34.114 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:34.114 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:34.114 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:56:34.114 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:34.114 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:56:34.304 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29077 855
17-03-18 06:56:34.454 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:56:34.484 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 06:56:34.484 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 06:56:34.484 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:34.484 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 06:56:34.484 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 06:56:34.484 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:34.494 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:34.494 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:34.494 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:56:34.504 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:56:34.684 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:34.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:34.684 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:34.684 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:34.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:34.684 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:34.684 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:34.684 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:56:34.684 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:34.684 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:56:34.864 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:56:34.874 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:34.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 29077 150' command took 2 ms to send, 1420 ms to get response, and 1430 ms overall
17-03-18 06:56:34.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:56:34.874 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.132304507655519. ------
17-03-18 06:56:34.874 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:56:34.874 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13864 mm
17-03-18 06:56:34.874 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:34.884 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:56:34.884 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:56:34.884 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:56:34.884 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 30287, sync = True, waitForSettling = False)
17-03-18 06:56:34.884 -07 000000585 INF: Z Motor: Moving to -0.138645 mm, started at -0.132305 mm, distance = -6.34 um
17-03-18 06:56:34.884 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 06:56:34.884 -07 000000606 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 06:56:34.894 -07 000000585 INF: FPGA: Xmit ZDACW 30287\n [Z Motor]
17-03-18 06:56:34.894 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:56:34.904 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:34.904 -07 000000585 INF: FPGA: 'ZDACW 30287' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:56:34.904 -07 000000437 INF: FPGA: Recv YRDPOS 126081
17-03-18 06:56:34.914 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:56:34.914 -07 000000606 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:34.914 -07 000000606 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:34.914 -07 000000606 INF: Y Motor: Moving 1343 steps-20
17-03-18 06:56:34.914 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:34.914 -07 000000626 INF: FPGA: Recv ZDACR 30287
17-03-18 06:56:34.924 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:56:34.924 -07 000000585 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 06:56:34.924 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:35.064 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:56:35.064 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 06:56:35.064 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:35.074 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:56:35.074 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:56:35.074 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:35.074 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:35.074 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:56:35.074 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:35.084 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:56:35.084 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:56:35.084 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:56:35.294 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 06:56:35.294 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 06:56:35.354 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:36.094 -07 000000430 INF: FPGA: Recv YRDPOS 127784
17-03-18 06:56:36.094 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 730 ms to get response, and 737 ms overall
17-03-18 06:56:36.094 -07 000000606 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:36.094 -07 000000606 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:56:36.094 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-18 06:56:36.904 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:56:36.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:56:37.044 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:37.044 -07 000000455 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:56:37.054 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:37.054 -07 000000606 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:37.084 -07 000000606 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:37.084 -07 000000606 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:56:37.084 -07 000000606 INF: Y Motor: Moved to 62.3950 after 2199 ms (table move)
17-03-18 06:56:37.084 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138645 mm (DAC = 30287)
17-03-18 06:56:37.084 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:37.084 -07 000000585 INF: FPGA: Recv ZSGSRD 30879
17-03-18 06:56:37.094 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:56:37.094 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:37.094 -07 000000585 INF: FPGA: Recv ZSGSRD 30866
17-03-18 06:56:37.104 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:37.104 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:37.104 -07 000000480 INF: FPGA: Recv ZSGSRD 30873
17-03-18 06:56:37.114 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:37.114 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:37.114 -07 000000447 INF: FPGA: Recv ZSGSRD 30865
17-03-18 06:56:37.124 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:37.124 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:37.124 -07 000000626 INF: FPGA: Recv ZSGSRD 30872
17-03-18 06:56:37.134 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:37.134 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:37.134 -07 000000626 INF: FPGA: Recv ZSGSRD 30875
17-03-18 06:56:37.144 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:37.144 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:37.144 -07 000000430 INF: FPGA: Recv ZSGSRD 30867
17-03-18 06:56:37.154 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:37.154 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:37.154 -07 000000461 INF: FPGA: Recv ZSGSRD 30872
17-03-18 06:56:37.164 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:37.164 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:37.164 -07 000000626 INF: FPGA: Recv ZSGSRD 30869
17-03-18 06:56:37.174 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:37.174 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:37.174 -07 000000461 INF: FPGA: Recv ZSGSRD 30874
17-03-18 06:56:37.184 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:37.184 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:37.184 -07 000000626 INF: FPGA: Recv ZPIEZORD 26680
17-03-18 06:56:37.194 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:37.194 -07 000000012 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.622 V. Piezo Error = -9.2 V.
17-03-18 06:56:37.194 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30871 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30872 (-137.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30865 (-137.8 uncal um), Max = 30879 (-137.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:56:37.194 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30871, posNoise = 8, negNoise = 6
17-03-18 06:56:37.194 -07 000000012 INF: Z Motor: After move to -0.138645, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:37.194 -07 000000012 INF: Z Motor: Settle wait time = 2203 ms, measure time = 105 ms (allowed 150 ms), total time = 2308 ms
17-03-18 06:56:37.194 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:37.244 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2361 ms
17-03-18 06:56:37.244 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:37.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:37.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:37.244 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:37.244 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:37.254 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:56:37.254 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:37.254 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:37.254 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:56:37.254 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:56:37.254 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:56:37.264 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:56:37.264 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:56:37.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:56:37.314 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:56:37.614 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:56:37.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:56:37.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:56:37.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) start.
17-03-18 06:56:37.654 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:56:37.654 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 06:56:37.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 06:56:37.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:56:37.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:37.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:56:37.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:56:37.754 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:56:37.754 -07 000000461 INF: Autofocus start
17-03-18 06:56:37.754 -07 000000461 INF: MeasureProfile start
17-03-18 06:56:37.764 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:56:37.764 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:56:37.764 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:56:37.774 -07 000000461 INF: MeasureProfile done
17-03-18 06:56:37.774 -07 000000461 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 06:56:37.774 -07 000000461 INF: Autofocus finished
17-03-18 06:56:37.964 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:56:37.964 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 06:56:37.964 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138645205039438. ----------
17-03-18 06:56:37.974 -07 000000610 INF: Cycle	155	Tile	4	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:37.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28782, sync = True, waitForSettling = True)
17-03-18 06:56:37.974 -07 000000610 INF: Z Motor: Moving to -0.131756 mm, started at -0.138645 mm, distance = 6.89 um
17-03-18 06:56:37.974 -07 000000610 INF: FPGA: Xmit ZDACW 28782\n [Z Motor]
17-03-18 06:56:37.974 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:56:37.984 -07 000000610 INF: FPGA: 'ZDACW 28782' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:56:37.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:37.984 -07 000000585 INF: FPGA: Recv ZDACR 28782
17-03-18 06:56:37.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:37.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:38.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:38.144 -07 000000461 INF: FPGA: Recv ZSGSRD 29798
17-03-18 06:56:38.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:38.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:38.154 -07 000000585 INF: FPGA: Recv ZSGSRD 29799
17-03-18 06:56:38.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:38.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:38.164 -07 000000012 INF: FPGA: Recv ZSGSRD 29797
17-03-18 06:56:38.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:38.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:38.174 -07 000000447 INF: FPGA: Recv ZSGSRD 29798
17-03-18 06:56:38.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:38.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:38.184 -07 000000606 INF: FPGA: Recv ZSGSRD 29797
17-03-18 06:56:38.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:38.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:38.194 -07 000000461 INF: FPGA: Recv ZSGSRD 29799
17-03-18 06:56:38.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:38.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:38.204 -07 000000447 INF: FPGA: Recv ZSGSRD 29801
17-03-18 06:56:38.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:38.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:38.214 -07 000000606 INF: FPGA: Recv ZSGSRD 29798
17-03-18 06:56:38.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:38.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:38.224 -07 000000437 INF: FPGA: Recv ZSGSRD 29798
17-03-18 06:56:38.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:38.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:38.234 -07 000000626 INF: FPGA: Recv ZSGSRD 29801
17-03-18 06:56:38.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:38.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:38.244 -07 000000447 INF: FPGA: Recv ZPIEZORD 25304
17-03-18 06:56:38.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:38.254 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.9 V.
17-03-18 06:56:38.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29799 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29798 (-131.0 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29797 (-131.0 uncal um), Max = 29801 (-131.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 06:56:38.254 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29799, posNoise = 2, negNoise = 2
17-03-18 06:56:38.254 -07 000000610 INF: Z Motor: After move to -0.131756, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:38.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:56:38.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:38.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:38.254 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:38.254 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:38.254 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:38.254 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:38.254 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:38.254 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:38.254 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:38.254 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:38.254 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:56:38.254 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:38.264 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:56:38.264 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:38.264 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:56:38.264 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:38.274 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:56:38.274 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:56:38.274 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:56:38.274 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:56:38.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28958 150\n [Camera]
17-03-18 06:56:38.474 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:38.944 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:38.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:38.944 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:38.944 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:38.944 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2639342000, 0x0, 391868352) start.
17-03-18 06:56:38.944 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:38.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:38.954 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:38.954 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:38.954 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:56:39.134 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28958 855
17-03-18 06:56:39.234 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.99219,
17-03-18 06:56:39.284 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:56:39.344 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2639342000, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 06:56:39.344 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 06:56:39.344 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:39.344 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:56:39.344 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:56:39.344 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:39.344 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:39.344 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:56:39.354 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:39.354 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:56:39.514 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:39.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:39.514 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:39.514 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:39.514 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:56:39.514 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:39.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:39.514 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:39.514 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:39.514 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 06:56:39.704 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:56:39.704 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:39.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28958 150' command took 2 ms to send, 1427 ms to get response, and 1433 ms overall
17-03-18 06:56:39.704 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.132306
17-03-18 06:56:39.704 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13231 mm
17-03-18 06:56:39.704 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:39.714 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 28902, sync = True, waitForSettling = False)
17-03-18 06:56:39.714 -07 000000585 INF: Z Motor: Moving to -0.132305 mm, started at -0.131758 mm, distance = -0.55 um
17-03-18 06:56:39.714 -07 000000585 INF: FPGA: Xmit ZDACW 28902\n [Z Motor]
17-03-18 06:56:39.714 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 06:56:39.714 -07 000000455 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 06:56:39.714 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:56:39.724 -07 000000585 INF: FPGA: 'ZDACW 28902' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:56:39.724 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:39.724 -07 000000447 INF: FPGA: Recv ZDACR 28902
17-03-18 06:56:39.734 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:39.734 -07 000000585 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-18 06:56:39.734 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:39.854 -07 000000012 INF: FPGA: Recv YRDPOS 127785
17-03-18 06:56:39.854 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 138 ms overall
17-03-18 06:56:39.854 -07 000000455 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:39.854 -07 000000455 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:39.854 -07 000000455 INF: Y Motor: Moving 1340 steps-17
17-03-18 06:56:39.854 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:39.914 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 06:56:39.914 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:56:39.914 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:39.914 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:56:39.914 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:56:39.914 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:39.924 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:39.924 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:56:39.924 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:56:39.924 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 06:56:40.234 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 06:56:40.234 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-18 06:56:40.284 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:40.284 -07 000000461 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:56:40.294 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:56:40.294 -07 000000455 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:40.294 -07 000000455 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 06:56:40.294 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.216 mm/sec
17-03-18 06:56:41.244 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:41.244 -07 000000430 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:56:41.254 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.254 -07 000000455 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:41.284 -07 000000455 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:41.284 -07 000000455 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:56:41.284 -07 000000455 INF: Y Motor: Moved to 63.2231 after 1570 ms (table move)
17-03-18 06:56:41.284 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132305 mm (DAC = 28902)
17-03-18 06:56:41.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.284 -07 000000012 INF: FPGA: Recv ZSGSRD 29894
17-03-18 06:56:41.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:56:41.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.294 -07 000000576 INF: FPGA: Recv ZSGSRD 29882
17-03-18 06:56:41.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.304 -07 000000437 INF: FPGA: Recv ZSGSRD 29878
17-03-18 06:56:41.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.314 -07 000000626 INF: FPGA: Recv ZSGSRD 29875
17-03-18 06:56:41.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.324 -07 000000585 INF: FPGA: Recv ZSGSRD 29889
17-03-18 06:56:41.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.334 -07 000000430 INF: FPGA: Recv ZSGSRD 29889
17-03-18 06:56:41.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.344 -07 000000591 INF: FPGA: Recv ZSGSRD 29892
17-03-18 06:56:41.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.354 -07 000000455 INF: FPGA: Recv ZSGSRD 29888
17-03-18 06:56:41.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.364 -07 000000444 INF: FPGA: Recv ZSGSRD 29884
17-03-18 06:56:41.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.374 -07 000000430 INF: FPGA: Recv ZSGSRD 29887
17-03-18 06:56:41.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:41.384 -07 000000461 INF: FPGA: Recv ZPIEZORD 25407
17-03-18 06:56:41.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.394 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.8 V.
17-03-18 06:56:41.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29886 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29888 (-131.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29875 (-131.5 uncal um), Max = 29894 (-131.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 06:56:41.394 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29886, posNoise = 8, negNoise = 11
17-03-18 06:56:41.394 -07 000000610 INF: Z Motor: After move to -0.132305, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:41.394 -07 000000610 INF: Z Motor: Settle wait time = 1573 ms, measure time = 105 ms (allowed 150 ms), total time = 1678 ms
17-03-18 06:56:41.394 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:41.444 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1730 ms
17-03-18 06:56:41.444 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:41.454 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.132317356079803. ----------
17-03-18 06:56:41.454 -07 000000610 INF: Cycle	155	Tile	5	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:41.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28725, sync = True, waitForSettling = True)
17-03-18 06:56:41.454 -07 000000610 INF: Z Motor: Moving to -0.131495 mm, started at -0.132317 mm, distance = 0.82 um
17-03-18 06:56:41.454 -07 000000610 INF: FPGA: Xmit ZDACW 28725\n [Z Motor]
17-03-18 06:56:41.464 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:56:41.464 -07 000000610 INF: FPGA: 'ZDACW 28725' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:56:41.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:41.464 -07 000000576 INF: FPGA: Recv ZDACR 28725
17-03-18 06:56:41.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:41.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.624 -07 000000461 INF: FPGA: Recv ZSGSRD 29760
17-03-18 06:56:41.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:41.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.634 -07 000000455 INF: FPGA: Recv ZSGSRD 29751
17-03-18 06:56:41.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.644 -07 000000479 INF: FPGA: Recv ZSGSRD 29755
17-03-18 06:56:41.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:56:41.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.654 -07 000000455 INF: FPGA: Recv ZSGSRD 29759
17-03-18 06:56:41.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.664 -07 000000430 INF: FPGA: Recv ZSGSRD 29763
17-03-18 06:56:41.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.674 -07 000000585 INF: FPGA: Recv ZSGSRD 29754
17-03-18 06:56:41.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.684 -07 000000576 INF: FPGA: Recv ZSGSRD 29758
17-03-18 06:56:41.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.694 -07 000000437 INF: FPGA: Recv ZSGSRD 29760
17-03-18 06:56:41.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.704 -07 000000447 INF: FPGA: Recv ZSGSRD 29749
17-03-18 06:56:41.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:41.714 -07 000000461 INF: FPGA: Recv ZSGSRD 29758
17-03-18 06:56:41.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:41.724 -07 000000591 INF: FPGA: Recv ZPIEZORD 25254
17-03-18 06:56:41.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:41.734 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.383 V. Piezo Error = -9.9 V.
17-03-18 06:56:41.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29757 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29758 (-130.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29749 (-130.7 uncal um), Max = 29763 (-130.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:56:41.734 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29757, posNoise = 6, negNoise = 8
17-03-18 06:56:41.734 -07 000000610 INF: Z Motor: After move to -0.131495, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:41.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 06:56:41.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:41.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:41.734 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:41.734 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:41.734 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:41.734 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:41.734 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:41.734 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:41.734 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:41.734 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:41.734 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:56:41.734 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:41.734 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:56:41.744 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:41.744 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:56:41.744 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:41.754 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 06:56:41.754 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:56:41.754 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 06:56:41.754 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 06:56:41.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28902 150\n [Camera]
17-03-18 06:56:41.904 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:56:41.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:56:41.954 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:42.424 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:42.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:42.424 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:42.424 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:42.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:42.424 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:42.434 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:42.434 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 06:56:42.434 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:42.434 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:56:42.614 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28902 855
17-03-18 06:56:42.764 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:56:42.814 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:56:42.814 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:56:42.814 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:42.814 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:56:42.814 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:56:42.814 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:42.824 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:42.824 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:56:42.824 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:42.824 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:56:42.994 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:42.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:42.994 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:42.994 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:42.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:42.994 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:42.994 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:42.994 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:56:43.004 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:43.004 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:56:43.184 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:56:43.184 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:43.184 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28902 150' command took 2 ms to send, 1425 ms to get response, and 1430 ms overall
17-03-18 06:56:43.184 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.131934
17-03-18 06:56:43.184 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13193 mm
17-03-18 06:56:43.184 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:43.194 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 28821, sync = True, waitForSettling = False)
17-03-18 06:56:43.194 -07 000000606 INF: Z Motor: Moving to -0.131934 mm, started at -0.131489 mm, distance = -0.45 um
17-03-18 06:56:43.194 -07 000000606 INF: FPGA: Xmit ZDACW 28821\n [Z Motor]
17-03-18 06:56:43.194 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 06:56:43.194 -07 000000447 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 06:56:43.194 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:56:43.204 -07 000000606 INF: FPGA: 'ZDACW 28821' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:56:43.204 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:43.204 -07 000000576 INF: FPGA: Recv ZDACR 28821
17-03-18 06:56:43.214 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:43.214 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:43.214 -07 000000606 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-18 06:56:43.214 -07 000000576 INF: FPGA: Recv YRDPOS 129481
17-03-18 06:56:43.224 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 06:56:43.224 -07 000000447 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:43.224 -07 000000447 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:43.224 -07 000000447 INF: Y Motor: Moving 1343 steps-19
17-03-18 06:56:43.224 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:43.394 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 06:56:43.394 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:56:43.394 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:43.394 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:56:43.394 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:56:43.394 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:43.394 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:56:43.394 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:43.394 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:56:43.404 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 06:56:43.594 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 06:56:43.594 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 06:56:43.654 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:43.654 -07 000000479 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:56:43.664 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:56:43.664 -07 000000447 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:43.664 -07 000000447 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 06:56:43.664 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.221 mm/sec
17-03-18 06:56:44.604 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.994908,
17-03-18 06:56:44.614 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:44.614 -07 000000461 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:56:44.624 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:44.624 -07 000000447 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:44.654 -07 000000447 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:44.654 -07 000000447 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:56:44.654 -07 000000447 INF: Y Motor: Moved to 64.0562 after 1459 ms (table move)
17-03-18 06:56:44.654 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131934 mm (DAC = 28821)
17-03-18 06:56:44.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:44.664 -07 000000479 INF: FPGA: Recv ZSGSRD 29828
17-03-18 06:56:44.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:56:44.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:44.674 -07 000000585 INF: FPGA: Recv ZSGSRD 29823
17-03-18 06:56:44.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:44.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:44.684 -07 000000444 INF: FPGA: Recv ZSGSRD 29827
17-03-18 06:56:44.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:44.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:44.694 -07 000000585 INF: FPGA: Recv ZSGSRD 29827
17-03-18 06:56:44.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:44.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:44.704 -07 000000444 INF: FPGA: Recv ZSGSRD 29827
17-03-18 06:56:44.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:44.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:44.714 -07 000000455 INF: FPGA: Recv ZSGSRD 29838
17-03-18 06:56:44.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:44.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:44.724 -07 000000479 INF: FPGA: Recv ZSGSRD 29831
17-03-18 06:56:44.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:44.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:44.734 -07 000000585 INF: FPGA: Recv ZSGSRD 29828
17-03-18 06:56:44.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:44.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:44.744 -07 000000606 INF: FPGA: Recv ZSGSRD 29827
17-03-18 06:56:44.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:44.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:44.754 -07 000000447 INF: FPGA: Recv ZSGSRD 29826
17-03-18 06:56:44.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:44.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:44.764 -07 000000479 INF: FPGA: Recv ZPIEZORD 25356
17-03-18 06:56:44.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:44.774 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.8 V.
17-03-18 06:56:44.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29828 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29827 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29823 (-131.1 uncal um), Max = 29838 (-131.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:56:44.774 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29828, posNoise = 10, negNoise = 5
17-03-18 06:56:44.774 -07 000000610 INF: Z Motor: After move to -0.131934, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:44.774 -07 000000610 INF: Z Motor: Settle wait time = 1462 ms, measure time = 115 ms (allowed 150 ms), total time = 1577 ms
17-03-18 06:56:44.774 -07 000000610 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:44.814 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 06:56:44.814 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:44.814 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.131944751775581. ----------
17-03-18 06:56:44.814 -07 000000610 INF: Cycle	155	Tile	6	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:44.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28644, sync = True, waitForSettling = True)
17-03-18 06:56:44.814 -07 000000610 INF: Z Motor: Moving to -0.131124 mm, started at -0.131945 mm, distance = 0.82 um
17-03-18 06:56:44.814 -07 000000610 INF: FPGA: Xmit ZDACW 28644\n [Z Motor]
17-03-18 06:56:44.824 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:56:44.824 -07 000000610 INF: FPGA: 'ZDACW 28644' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 06:56:44.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:44.824 -07 000000479 INF: FPGA: Recv ZDACR 28644
17-03-18 06:56:44.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:56:44.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:44.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:44.984 -07 000000606 INF: FPGA: Recv ZSGSRD 29695
17-03-18 06:56:44.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:44.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:44.994 -07 000000444 INF: FPGA: Recv ZSGSRD 29707
17-03-18 06:56:45.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:45.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:45.004 -07 000000455 INF: FPGA: Recv ZSGSRD 29700
17-03-18 06:56:45.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:45.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:45.014 -07 000000576 INF: FPGA: Recv ZSGSRD 29698
17-03-18 06:56:45.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:45.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:45.024 -07 000000461 INF: FPGA: Recv ZSGSRD 29703
17-03-18 06:56:45.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:45.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:45.034 -07 000000444 INF: FPGA: Recv ZSGSRD 29702
17-03-18 06:56:45.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:45.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:45.044 -07 000000606 INF: FPGA: Recv ZSGSRD 29706
17-03-18 06:56:45.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:45.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:45.054 -07 000000576 INF: FPGA: Recv ZSGSRD 29704
17-03-18 06:56:45.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:45.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:45.064 -07 000000585 INF: FPGA: Recv ZSGSRD 29700
17-03-18 06:56:45.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:45.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:45.074 -07 000000444 INF: FPGA: Recv ZSGSRD 29701
17-03-18 06:56:45.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:45.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:45.084 -07 000000606 INF: FPGA: Recv ZPIEZORD 25198
17-03-18 06:56:45.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:45.094 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.9 V.
17-03-18 06:56:45.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29702 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29702 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29695 (-130.3 uncal um), Max = 29707 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:56:45.094 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29702, posNoise = 5, negNoise = 7
17-03-18 06:56:45.094 -07 000000610 INF: Z Motor: After move to -0.131124, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:45.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:56:45.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:45.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:45.094 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:45.094 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:45.094 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:45.094 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:45.094 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:45.094 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:45.094 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:45.094 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:45.094 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:56:45.094 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:45.104 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:56:45.104 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:45.104 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:56:45.104 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:45.114 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:56:45.114 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 06:56:45.114 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:56:45.114 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:56:45.114 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28821 150\n [Camera]
17-03-18 06:56:45.314 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:45.784 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:45.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:45.784 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:45.794 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:45.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:45.794 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:45.794 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:45.794 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:56:45.794 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:45.794 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:56:45.984 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28821 855
17-03-18 06:56:46.134 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:56:46.174 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:56:46.174 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:56:46.174 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:46.174 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:56:46.174 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:56:46.174 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:46.174 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:56:46.174 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:46.174 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:56:46.184 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:56:46.354 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:46.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:46.354 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:46.354 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:46.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:46.364 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:46.364 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:46.364 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 06:56:46.364 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:46.364 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:56:46.544 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:56:46.544 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:46.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28821 150' command took 2 ms to send, 1428 ms to get response, and 1434 ms overall
17-03-18 06:56:46.554 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.131773
17-03-18 06:56:46.554 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13177 mm
17-03-18 06:56:46.554 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:46.554 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 06:56:46.554 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 28786, sync = True, waitForSettling = False)
17-03-18 06:56:46.554 -07 000000462 INF: Z Motor: Moving to -0.131774 mm, started at -0.131135 mm, distance = -0.64 um
17-03-18 06:56:46.554 -07 000000462 INF: FPGA: Xmit ZDACW 28786\n [Z Motor]
17-03-18 06:56:46.554 -07 000000585 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 06:56:46.554 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:56:46.564 -07 000000462 INF: FPGA: 'ZDACW 28786' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:56:46.564 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:46.564 -07 000000447 INF: FPGA: Recv YRDPOS 131187
17-03-18 06:56:46.574 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:56:46.574 -07 000000585 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:46.574 -07 000000585 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:46.574 -07 000000585 INF: Y Motor: Moving 1338 steps-13
17-03-18 06:56:46.574 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:46.574 -07 000000455 INF: FPGA: Recv ZDACR 28786
17-03-18 06:56:46.584 -07 000000462 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:56:46.584 -07 000000462 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 06:56:46.584 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:46.734 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:56:46.734 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:56:46.734 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:46.744 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:56:46.744 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 06:56:46.744 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:46.744 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:46.744 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:46.744 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:56:46.754 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:56:46.904 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:56:46.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:56:46.954 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:56:46.954 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 06:56:47.014 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:47.014 -07 000000576 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:56:47.024 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:56:47.024 -07 000000585 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:47.024 -07 000000585 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:56:47.024 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.836 mm, average velocity = 2.167 mm/sec
17-03-18 06:56:47.974 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:47.974 -07 000000444 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:56:47.984 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:47.984 -07 000000585 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:48.014 -07 000000585 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:48.014 -07 000000585 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:56:48.014 -07 000000585 INF: Y Motor: Moved to 64.8784 after 1464 ms (table move)
17-03-18 06:56:48.024 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131774 mm (DAC = 28786)
17-03-18 06:56:48.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.024 -07 000000585 INF: FPGA: Recv ZSGSRD 29802
17-03-18 06:56:48.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:56:48.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.034 -07 000000585 INF: FPGA: Recv ZSGSRD 29801
17-03-18 06:56:48.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.044 -07 000000585 INF: FPGA: Recv ZSGSRD 29797
17-03-18 06:56:48.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.054 -07 000000585 INF: FPGA: Recv ZSGSRD 29799
17-03-18 06:56:48.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.064 -07 000000461 INF: FPGA: Recv ZSGSRD 29800
17-03-18 06:56:48.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.074 -07 000000461 INF: FPGA: Recv ZSGSRD 29806
17-03-18 06:56:48.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.084 -07 000000606 INF: FPGA: Recv ZSGSRD 29794
17-03-18 06:56:48.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.094 -07 000000461 INF: FPGA: Recv ZSGSRD 29803
17-03-18 06:56:48.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.104 -07 000000606 INF: FPGA: Recv ZSGSRD 29807
17-03-18 06:56:48.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.114 -07 000000606 INF: FPGA: Recv ZSGSRD 29803
17-03-18 06:56:48.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:48.124 -07 000000447 INF: FPGA: Recv ZPIEZORD 25318
17-03-18 06:56:48.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.134 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.8 V.
17-03-18 06:56:48.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29801 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29802 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29794 (-130.9 uncal um), Max = 29807 (-131.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:56:48.134 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29801, posNoise = 6, negNoise = 7
17-03-18 06:56:48.134 -07 000000610 INF: Z Motor: After move to -0.131774, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:48.134 -07 000000610 INF: Z Motor: Settle wait time = 1467 ms, measure time = 109 ms (allowed 150 ms), total time = 1576 ms
17-03-18 06:56:48.134 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:48.184 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 06:56:48.184 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:48.184 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.131771298047753. ----------
17-03-18 06:56:48.184 -07 000000610 INF: Cycle	155	Tile	7	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:48.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28609, sync = True, waitForSettling = True)
17-03-18 06:56:48.184 -07 000000610 INF: Z Motor: Moving to -0.130964 mm, started at -0.131771 mm, distance = 0.81 um
17-03-18 06:56:48.184 -07 000000610 INF: FPGA: Xmit ZDACW 28609\n [Z Motor]
17-03-18 06:56:48.184 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:56:48.194 -07 000000610 INF: FPGA: 'ZDACW 28609' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:56:48.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:48.194 -07 000000576 INF: FPGA: Recv ZDACR 28609
17-03-18 06:56:48.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:48.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.354 -07 000000462 INF: FPGA: Recv ZSGSRD 29676
17-03-18 06:56:48.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:48.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.364 -07 000000461 INF: FPGA: Recv ZSGSRD 29677
17-03-18 06:56:48.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.374 -07 000000462 INF: FPGA: Recv ZSGSRD 29670
17-03-18 06:56:48.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.384 -07 000000461 INF: FPGA: Recv ZSGSRD 29677
17-03-18 06:56:48.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.394 -07 000000479 INF: FPGA: Recv ZSGSRD 29678
17-03-18 06:56:48.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.404 -07 000000455 INF: FPGA: Recv ZSGSRD 29674
17-03-18 06:56:48.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.414 -07 000000462 INF: FPGA: Recv ZSGSRD 29678
17-03-18 06:56:48.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.424 -07 000000444 INF: FPGA: Recv ZSGSRD 29680
17-03-18 06:56:48.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.434 -07 000000455 INF: FPGA: Recv ZSGSRD 29677
17-03-18 06:56:48.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:48.444 -07 000000461 INF: FPGA: Recv ZSGSRD 29671
17-03-18 06:56:48.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:48.454 -07 000000479 INF: FPGA: Recv ZPIEZORD 25147
17-03-18 06:56:48.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:48.464 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -9.9 V.
17-03-18 06:56:48.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29676 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29677 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29670 (-130.1 uncal um), Max = 29680 (-130.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:56:48.464 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29676, posNoise = 4, negNoise = 6
17-03-18 06:56:48.464 -07 000000610 INF: Z Motor: After move to -0.130964, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:48.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:56:48.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:48.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:48.464 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:48.464 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:48.464 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:48.464 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:48.464 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:48.464 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:48.464 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:56:48.464 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:48.464 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:56:48.464 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:48.474 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:56:48.474 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:48.474 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:56:48.474 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:48.484 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:56:48.484 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:56:48.484 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:56:48.484 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:56:48.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28786 150\n [Camera]
17-03-18 06:56:48.684 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:49.154 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:49.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:49.164 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:49.164 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:49.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:49.164 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:49.164 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:49.164 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:56:49.164 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:49.164 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:56:49.354 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28786 855
17-03-18 06:56:49.504 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:56:49.544 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:56:49.544 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:56:49.544 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:49.544 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:56:49.544 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:56:49.544 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:49.544 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:49.544 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:49.544 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:56:49.554 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:56:49.724 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:49.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:49.724 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:49.734 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:49.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:49.734 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:49.734 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:49.734 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) start.
17-03-18 06:56:49.734 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:49.734 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:56:49.914 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-18 06:56:49.914 -07 000000479 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:49.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28786 150' command took 2 ms to send, 1419 ms to get response, and 1430 ms overall
17-03-18 06:56:49.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:56:49.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.130968271530033. ------
17-03-18 06:56:49.924 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:56:49.924 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13766 mm
17-03-18 06:56:49.924 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:49.924 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 06:56:49.924 -07 000000461 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 06:56:49.924 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:56:49.924 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 30072, sync = True, waitForSettling = False)
17-03-18 06:56:49.924 -07 000000479 INF: Z Motor: Moving to -0.137661 mm, started at -0.130968 mm, distance = -6.69 um
17-03-18 06:56:49.934 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:56:49.934 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:49.934 -07 000000576 INF: FPGA: Recv YRDPOS 132871
17-03-18 06:56:49.944 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:56:49.944 -07 000000479 INF: FPGA: Xmit ZDACW 30072\n [Z Motor]
17-03-18 06:56:49.944 -07 000000461 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:49.944 -07 000000461 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:49.944 -07 000000461 INF: Y Motor: Moving 1351 steps-29
17-03-18 06:56:49.944 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:56:49.954 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:56:49.954 -07 000000479 INF: FPGA: 'ZDACW 30072' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:56:49.964 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:49.974 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:49.974 -07 000000576 INF: FPGA: Recv ZDACR 30072
17-03-18 06:56:49.984 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:56:49.984 -07 000000479 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 06:56:50.004 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.020806,
17-03-18 06:56:50.114 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:56:50.114 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 06:56:50.114 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:50.114 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:56:50.114 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:56:50.114 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:50.124 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:50.124 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:56:50.124 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:56:50.124 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:56:50.154 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:56:50.154 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:56:50.334 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 06:56:50.334 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:56:50.394 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:50.394 -07 000000444 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:56:50.404 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:56:50.404 -07 000000461 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:50.404 -07 000000461 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 06:56:50.404 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 06:56:51.354 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:51.354 -07 000000437 INF: FPGA: Recv YRDPOS 134581
17-03-18 06:56:51.364 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:51.364 -07 000000461 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:51.394 -07 000000461 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:51.394 -07 000000461 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:56:51.394 -07 000000461 INF: Y Motor: Moved to 65.7134 after 1471 ms (table move)
17-03-18 06:56:51.404 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137661 mm (DAC = 30072)
17-03-18 06:56:51.404 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:51.404 -07 000000461 INF: FPGA: Recv ZSGSRD 30710
17-03-18 06:56:51.414 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:56:51.414 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:51.414 -07 000000479 INF: FPGA: Recv ZSGSRD 30718
17-03-18 06:56:51.424 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:51.424 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:51.424 -07 000000461 INF: FPGA: Recv ZSGSRD 30720
17-03-18 06:56:51.434 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:51.434 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:51.434 -07 000000437 INF: FPGA: Recv ZSGSRD 30718
17-03-18 06:56:51.444 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:51.444 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:51.444 -07 000000437 INF: FPGA: Recv ZSGSRD 30714
17-03-18 06:56:51.454 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:51.454 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:51.454 -07 000000437 INF: FPGA: Recv ZSGSRD 30724
17-03-18 06:56:51.464 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:51.464 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:51.464 -07 000000437 INF: FPGA: Recv ZSGSRD 30728
17-03-18 06:56:51.474 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:51.474 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:51.474 -07 000000444 INF: FPGA: Recv ZSGSRD 30721
17-03-18 06:56:51.484 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:51.484 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:51.484 -07 000000444 INF: FPGA: Recv ZSGSRD 30718
17-03-18 06:56:51.494 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:51.494 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:51.494 -07 000000444 INF: FPGA: Recv ZSGSRD 30717
17-03-18 06:56:51.504 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:51.504 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:51.504 -07 000000444 INF: FPGA: Recv ZPIEZORD 26506
17-03-18 06:56:51.514 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:51.514 -07 000000462 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.589 V. Piezo Error = -9.3 V.
17-03-18 06:56:51.514 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30719 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30718 (-136.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30710 (-136.8 uncal um), Max = 30728 (-136.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:56:51.514 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30719, posNoise = 9, negNoise = 9
17-03-18 06:56:51.514 -07 000000462 INF: Z Motor: After move to -0.137661, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:51.514 -07 000000462 INF: Z Motor: Settle wait time = 1474 ms, measure time = 107 ms (allowed 150 ms), total time = 1581 ms
17-03-18 06:56:51.514 -07 000000462 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:51.564 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 06:56:51.564 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:51.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:51.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:51.564 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:51.564 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:51.564 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:56:51.564 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:51.564 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:56:51.564 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:56:51.574 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:56:51.574 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:56:51.574 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 06:56:51.574 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 06:56:51.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:56:51.624 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:56:51.904 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:56:51.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:56:51.924 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:56:51.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:56:51.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:56:51.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 06:56:51.964 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:56:51.964 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 06:56:51.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 06:56:52.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 06:56:52.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:52.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 06:56:52.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 06:56:52.064 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:56:52.064 -07 000000606 INF: Autofocus start
17-03-18 06:56:52.064 -07 000000606 INF: MeasureProfile start
17-03-18 06:56:52.064 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:56:52.074 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:56:52.074 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:56:52.084 -07 000000606 INF: MeasureProfile done
17-03-18 06:56:52.084 -07 000000606 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:56:52.084 -07 000000606 INF: Autofocus finished
17-03-18 06:56:52.274 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:56:52.274 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:56:52.274 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.13766872479389. ----------
17-03-18 06:56:52.274 -07 000000610 INF: Cycle	155	Tile	8	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:52.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28596, sync = True, waitForSettling = True)
17-03-18 06:56:52.284 -07 000000610 INF: Z Motor: Moving to -0.130904 mm, started at -0.137669 mm, distance = 6.76 um
17-03-18 06:56:52.284 -07 000000610 INF: FPGA: Xmit ZDACW 28596\n [Z Motor]
17-03-18 06:56:52.284 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 06:56:52.294 -07 000000610 INF: FPGA: 'ZDACW 28596' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:56:52.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:52.294 -07 000000606 INF: FPGA: Recv ZDACR 28596
17-03-18 06:56:52.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:52.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:52.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:52.454 -07 000000606 INF: FPGA: Recv ZSGSRD 29667
17-03-18 06:56:52.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:52.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:52.464 -07 000000591 INF: FPGA: Recv ZSGSRD 29663
17-03-18 06:56:52.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:52.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:52.474 -07 000000437 INF: FPGA: Recv ZSGSRD 29667
17-03-18 06:56:52.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:52.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:52.484 -07 000000430 INF: FPGA: Recv ZSGSRD 29664
17-03-18 06:56:52.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:52.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:52.494 -07 000000591 INF: FPGA: Recv ZSGSRD 29667
17-03-18 06:56:52.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:52.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:52.504 -07 000000430 INF: FPGA: Recv ZSGSRD 29669
17-03-18 06:56:52.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:52.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:52.514 -07 000000606 INF: FPGA: Recv ZSGSRD 29673
17-03-18 06:56:52.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:52.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:52.524 -07 000000437 INF: FPGA: Recv ZSGSRD 29668
17-03-18 06:56:52.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:52.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:52.534 -07 000000606 INF: FPGA: Recv ZSGSRD 29666
17-03-18 06:56:52.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:52.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:52.544 -07 000000437 INF: FPGA: Recv ZSGSRD 29663
17-03-18 06:56:52.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:52.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:52.554 -07 000000591 INF: FPGA: Recv ZPIEZORD 25121
17-03-18 06:56:52.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:52.564 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -10.0 V.
17-03-18 06:56:52.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29667 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29667 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29663 (-130.1 uncal um), Max = 29673 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:56:52.564 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29667, posNoise = 6, negNoise = 4
17-03-18 06:56:52.564 -07 000000610 INF: Z Motor: After move to -0.130904, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:52.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 06:56:52.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:52.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:52.564 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:52.564 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:52.564 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:52.564 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:52.564 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:52.564 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:52.564 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 06:56:52.564 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:52.564 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:56:52.564 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:52.574 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:56:52.574 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:52.574 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:56:52.574 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:52.584 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:56:52.584 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:56:52.584 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:56:52.584 -07 000000479 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:56:52.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28773 150\n [Camera]
17-03-18 06:56:52.784 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:53.254 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:53.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:53.254 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:53.254 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:53.254 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2639342000, 0x0, 391868352) start.
17-03-18 06:56:53.254 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:53.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:53.254 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:53.254 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:53.254 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 06:56:53.444 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28773 855
17-03-18 06:56:53.594 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:56:53.634 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 06:56:53.634 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:56:53.634 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:53.634 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2639342000, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:56:53.634 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:56:53.634 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:53.644 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:56:53.644 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:56:53.644 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:56:53.644 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 06:56:53.954 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:53.954 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:53.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:53.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:53.954 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:53.954 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:53.964 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:53.964 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:56:53.964 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:53.964 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 06:56:54.014 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-18 06:56:54.014 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:54.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28773 150' command took 2 ms to send, 1423 ms to get response, and 1430 ms overall
17-03-18 06:56:54.014 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131199
17-03-18 06:56:54.014 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13120 mm
17-03-18 06:56:54.014 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:54.014 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 06:56:54.014 -07 000000437 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 06:56:54.014 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:54.014 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 28660, sync = True, waitForSettling = False)
17-03-18 06:56:54.014 -07 000000430 INF: Z Motor: Moving to -0.131197 mm, started at -0.130910 mm, distance = -0.29 um
17-03-18 06:56:54.024 -07 000000430 INF: FPGA: Xmit ZDACW 28660\n [Z Motor]
17-03-18 06:56:54.024 -07 000000606 INF: FPGA: Recv YRDPOS 134582
17-03-18 06:56:54.024 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 06:56:54.024 -07 000000437 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:54.024 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:56:54.034 -07 000000430 INF: FPGA: 'ZDACW 28660' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:54.034 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:54.034 -07 000000437 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:54.034 -07 000000437 INF: Y Motor: Moving 1342 steps-19
17-03-18 06:56:54.034 -07 000000591 INF: FPGA: Recv ZDACR 28660
17-03-18 06:56:54.044 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:54.044 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:54.044 -07 000000430 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 06:56:54.344 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:56:54.344 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:56:54.344 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:54.344 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 06:56:54.344 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:56:54.344 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:54.344 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:54.354 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:54.354 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:56:54.354 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:56:54.424 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 06:56:54.424 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 387 ms overall
17-03-18 06:56:54.474 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:54.474 -07 000000461 INF: FPGA: Recv YRDPOS 136270
17-03-18 06:56:54.484 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:56:54.484 -07 000000437 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:54.484 -07 000000437 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:56:54.484 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.169 mm/sec
17-03-18 06:56:55.364 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.016692,
17-03-18 06:56:55.434 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:55.434 -07 000000430 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:56:55.444 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:55.444 -07 000000437 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:55.474 -07 000000437 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:55.474 -07 000000437 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:56:55.474 -07 000000437 INF: Y Motor: Moved to 66.5386 after 1456 ms (table move)
17-03-18 06:56:55.474 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131197 mm (DAC = 28660)
17-03-18 06:56:55.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.484 -07 000000479 INF: FPGA: Recv ZSGSRD 29713
17-03-18 06:56:55.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:56:55.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.484 -07 000000430 INF: FPGA: Recv ZSGSRD 29713
17-03-18 06:56:55.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:56:55.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.494 -07 000000591 INF: FPGA: Recv ZSGSRD 29713
17-03-18 06:56:55.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.504 -07 000000606 INF: FPGA: Recv ZSGSRD 29710
17-03-18 06:56:55.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.514 -07 000000430 INF: FPGA: Recv ZSGSRD 29711
17-03-18 06:56:55.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.524 -07 000000461 INF: FPGA: Recv ZSGSRD 29705
17-03-18 06:56:55.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.534 -07 000000591 INF: FPGA: Recv ZSGSRD 29709
17-03-18 06:56:55.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.544 -07 000000461 INF: FPGA: Recv ZSGSRD 29716
17-03-18 06:56:55.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.554 -07 000000430 INF: FPGA: Recv ZSGSRD 29706
17-03-18 06:56:55.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.564 -07 000000437 INF: FPGA: Recv ZSGSRD 29711
17-03-18 06:56:55.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:55.574 -07 000000591 INF: FPGA: Recv ZPIEZORD 25216
17-03-18 06:56:55.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.584 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -9.9 V.
17-03-18 06:56:55.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29711 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29711 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29705 (-130.4 uncal um), Max = 29716 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:56:55.584 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29711, posNoise = 5, negNoise = 6
17-03-18 06:56:55.584 -07 000000610 INF: Z Motor: After move to -0.131197, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:55.584 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 103 ms (allowed 150 ms), total time = 1561 ms
17-03-18 06:56:55.584 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:55.634 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 06:56:55.634 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:55.634 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.131193118954995. ----------
17-03-18 06:56:55.634 -07 000000610 INF: Cycle	155	Tile	9	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:55.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28484, sync = True, waitForSettling = True)
17-03-18 06:56:55.634 -07 000000610 INF: Z Motor: Moving to -0.130391 mm, started at -0.131193 mm, distance = 0.80 um
17-03-18 06:56:55.634 -07 000000610 INF: FPGA: Xmit ZDACW 28484\n [Z Motor]
17-03-18 06:56:55.634 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:56:55.644 -07 000000610 INF: FPGA: 'ZDACW 28484' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:56:55.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:55.644 -07 000000591 INF: FPGA: Recv ZDACR 28484
17-03-18 06:56:55.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:55.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.804 -07 000000606 INF: FPGA: Recv ZSGSRD 29585
17-03-18 06:56:55.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:55.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.814 -07 000000437 INF: FPGA: Recv ZSGSRD 29585
17-03-18 06:56:55.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.824 -07 000000479 INF: FPGA: Recv ZSGSRD 29588
17-03-18 06:56:55.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.834 -07 000000606 INF: FPGA: Recv ZSGSRD 29590
17-03-18 06:56:55.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.844 -07 000000437 INF: FPGA: Recv ZSGSRD 29583
17-03-18 06:56:55.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.854 -07 000000479 INF: FPGA: Recv ZSGSRD 29590
17-03-18 06:56:55.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.864 -07 000000437 INF: FPGA: Recv ZSGSRD 29586
17-03-18 06:56:55.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.874 -07 000000461 INF: FPGA: Recv ZSGSRD 29584
17-03-18 06:56:55.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.884 -07 000000606 INF: FPGA: Recv ZSGSRD 29583
17-03-18 06:56:55.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:55.894 -07 000000461 INF: FPGA: Recv ZSGSRD 29589
17-03-18 06:56:55.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:55.904 -07 000000606 INF: FPGA: Recv ZPIEZORD 25054
17-03-18 06:56:55.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:55.914 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -9.9 V.
17-03-18 06:56:55.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29586 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29586 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29583 (-129.6 uncal um), Max = 29590 (-129.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:56:55.914 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29586, posNoise = 4, negNoise = 3
17-03-18 06:56:55.914 -07 000000610 INF: Z Motor: After move to -0.130391, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:55.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:56:55.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:55.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:55.914 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:55.914 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:55.914 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:55.914 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:55.914 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:55.914 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:56:55.914 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:55.914 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:55.914 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:55.914 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:55.924 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:56:55.924 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:55.924 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:56:55.924 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:55.934 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:56:55.934 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:56:55.934 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:56:55.934 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 06:56:55.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28660 150\n [Camera]
17-03-18 06:56:56.134 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:56.614 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:56.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:56.614 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:56.614 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:56.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:56.614 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:56.614 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:56.614 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:56:56.614 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:56.614 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2432798312, 0x0, 391868352) start.
17-03-18 06:56:56.804 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28660 855
17-03-18 06:56:56.904 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:56:56.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:56:56.954 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:56:56.984 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2432798312, 0x0, 391868352) end. Duration was 371 ms.
17-03-18 06:56:56.984 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 06:56:56.984 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:56.994 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:56:56.994 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:56:56.994 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:56.994 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:56.994 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:56:56.994 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:56:57.004 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:56:57.174 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:56:57.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:56:57.184 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:57.184 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:56:57.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:56:57.184 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:57.184 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:57.184 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 06:56:57.184 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:57.184 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:56:57.374 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:56:57.374 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:56:57.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28660 150' command took 2 ms to send, 1420 ms to get response, and 1430 ms overall
17-03-18 06:56:57.374 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131267
17-03-18 06:56:57.374 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13127 mm
17-03-18 06:56:57.374 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:56:57.374 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 06:56:57.374 -07 000000437 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 06:56:57.374 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:57.374 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 28675, sync = True, waitForSettling = False)
17-03-18 06:56:57.374 -07 000000461 INF: Z Motor: Moving to -0.131266 mm, started at -0.130390 mm, distance = -0.88 um
17-03-18 06:56:57.374 -07 000000585 INF: FPGA: Recv YRDPOS 136271
17-03-18 06:56:57.384 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:56:57.384 -07 000000437 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:57.384 -07 000000437 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:56:57.384 -07 000000437 INF: Y Motor: Moving 1350 steps-30
17-03-18 06:56:57.384 -07 000000461 INF: FPGA: Xmit ZDACW 28675\n [Z Motor]
17-03-18 06:56:57.384 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 06:56:57.394 -07 000000461 INF: FPGA: 'ZDACW 28675' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:56:57.394 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:57.394 -07 000000606 INF: FPGA: Recv ZDACR 28675
17-03-18 06:56:57.404 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:57.404 -07 000000461 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 06:56:57.404 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:56:57.564 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 06:56:57.564 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 06:56:57.564 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:57.564 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 06:56:57.564 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 06:56:57.564 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:56:57.564 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:56:57.564 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:56:57.574 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:56:57.574 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 06:56:57.774 -07 000000479 INF: FPGA: Recv YMVTILE
17-03-18 06:56:57.774 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 06:56:57.834 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:57.834 -07 000000479 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:56:57.844 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:56:57.844 -07 000000437 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:57.844 -07 000000437 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 06:56:57.844 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 06:56:58.794 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:56:58.794 -07 000000606 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:56:58.804 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:58.804 -07 000000437 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:56:58.834 -07 000000437 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:56:58.834 -07 000000437 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:56:58.834 -07 000000437 INF: Y Motor: Moved to 67.3711 after 1457 ms (table move)
17-03-18 06:56:58.834 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131266 mm (DAC = 28675)
17-03-18 06:56:58.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:58.834 -07 000000591 INF: FPGA: Recv ZSGSRD 29721
17-03-18 06:56:58.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:56:58.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:58.844 -07 000000606 INF: FPGA: Recv ZSGSRD 29719
17-03-18 06:56:58.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:58.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:58.854 -07 000000591 INF: FPGA: Recv ZSGSRD 29716
17-03-18 06:56:58.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:58.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:58.864 -07 000000447 INF: FPGA: Recv ZSGSRD 29723
17-03-18 06:56:58.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:58.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:58.874 -07 000000591 INF: FPGA: Recv ZSGSRD 29719
17-03-18 06:56:58.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:58.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:58.884 -07 000000430 INF: FPGA: Recv ZSGSRD 29722
17-03-18 06:56:58.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:58.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:58.894 -07 000000480 INF: FPGA: Recv ZSGSRD 29732
17-03-18 06:56:58.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:58.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:58.904 -07 000000479 INF: FPGA: Recv ZSGSRD 29725
17-03-18 06:56:58.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:56:58.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:58.914 -07 000000606 INF: FPGA: Recv ZSGSRD 29720
17-03-18 06:56:58.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:58.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:58.924 -07 000000479 INF: FPGA: Recv ZSGSRD 29723
17-03-18 06:56:58.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:58.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:58.934 -07 000000585 INF: FPGA: Recv ZPIEZORD 25277
17-03-18 06:56:58.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:58.944 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.8 V.
17-03-18 06:56:58.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29722 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29722 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29716 (-130.4 uncal um), Max = 29732 (-130.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:56:58.944 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29722, posNoise = 10, negNoise = 6
17-03-18 06:56:58.944 -07 000000610 INF: Z Motor: After move to -0.131266, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:58.944 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 106 ms (allowed 150 ms), total time = 1564 ms
17-03-18 06:56:58.944 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 06:56:58.994 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 06:56:58.994 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:56:58.994 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.131263785288554. ----------
17-03-18 06:56:58.994 -07 000000610 INF: Cycle	155	Tile	10	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:56:58.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28498, sync = True, waitForSettling = True)
17-03-18 06:56:58.994 -07 000000610 INF: Z Motor: Moving to -0.130455 mm, started at -0.131264 mm, distance = 0.81 um
17-03-18 06:56:58.994 -07 000000610 INF: FPGA: Xmit ZDACW 28498\n [Z Motor]
17-03-18 06:56:58.994 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 06:56:59.004 -07 000000610 INF: FPGA: 'ZDACW 28498' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:56:59.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:56:59.004 -07 000000585 INF: FPGA: Recv ZDACR 28498
17-03-18 06:56:59.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:59.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:56:59.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:59.164 -07 000000606 INF: FPGA: Recv ZSGSRD 29598
17-03-18 06:56:59.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:56:59.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:59.174 -07 000000585 INF: FPGA: Recv ZSGSRD 29597
17-03-18 06:56:59.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:59.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:59.184 -07 000000591 INF: FPGA: Recv ZSGSRD 29599
17-03-18 06:56:59.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:59.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:59.194 -07 000000585 INF: FPGA: Recv ZSGSRD 29592
17-03-18 06:56:59.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:59.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:59.204 -07 000000606 INF: FPGA: Recv ZSGSRD 29595
17-03-18 06:56:59.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:59.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:59.214 -07 000000585 INF: FPGA: Recv ZSGSRD 29603
17-03-18 06:56:59.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:59.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:59.224 -07 000000591 INF: FPGA: Recv ZSGSRD 29600
17-03-18 06:56:59.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:59.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:59.234 -07 000000606 INF: FPGA: Recv ZSGSRD 29600
17-03-18 06:56:59.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:59.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:59.244 -07 000000479 INF: FPGA: Recv ZSGSRD 29596
17-03-18 06:56:59.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:59.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:56:59.254 -07 000000479 INF: FPGA: Recv ZSGSRD 29594
17-03-18 06:56:59.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:59.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:56:59.264 -07 000000479 INF: FPGA: Recv ZPIEZORD 25096
17-03-18 06:56:59.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:56:59.274 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -9.9 V.
17-03-18 06:56:59.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29597 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29598 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29592 (-129.6 uncal um), Max = 29603 (-129.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:56:59.274 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29597, posNoise = 6, negNoise = 5
17-03-18 06:56:59.274 -07 000000610 INF: Z Motor: After move to -0.130455, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:56:59.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 06:56:59.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:56:59.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:56:59.274 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:56:59.274 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:56:59.274 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:56:59.274 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:56:59.274 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:56:59.274 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:56:59.274 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:56:59.274 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:56:59.274 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:56:59.274 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:56:59.284 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:56:59.284 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:56:59.284 -07 000000479 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:56:59.284 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:56:59.294 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:56:59.294 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:56:59.294 -07 000000479 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:56:59.294 -07 000000479 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:56:59.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28675 150\n [Camera]
17-03-18 06:56:59.494 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:56:59.964 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:56:59.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:56:59.974 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:56:59.974 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:56:59.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:56:59.974 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:56:59.974 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:56:59.974 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:56:59.974 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:56:59.974 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2432798312, 0x0, 391868352) start.
17-03-18 06:57:00.164 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28675 855
17-03-18 06:57:00.314 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:57:00.344 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2432798312, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:57:00.344 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 06:57:00.344 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:00.344 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 06:57:00.344 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 06:57:00.354 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:00.354 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:00.354 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:57:00.354 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:00.364 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:57:00.534 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:57:00.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:57:00.534 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:00.544 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:00.544 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2603919736, 0x0, 391868352) start.
17-03-18 06:57:00.544 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:57:00.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:57:00.544 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:00.544 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:00.544 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2639342000, 0x0, 418435064) start.
17-03-18 06:57:00.724 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-18 06:57:00.734 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.977204,
17-03-18 06:57:00.734 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:57:00.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28675 150' command took 2 ms to send, 1420 ms to get response, and 1430 ms overall
17-03-18 06:57:00.734 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.130799
17-03-18 06:57:00.734 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13080 mm
17-03-18 06:57:00.734 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:57:00.734 -07 000000479 INF: Z Motor: Entering MoveAbsStepped (DAC = 28573, sync = True, waitForSettling = False)
17-03-18 06:57:00.734 -07 000000479 INF: Z Motor: Moving to -0.130799 mm, started at -0.130461 mm, distance = -0.34 um
17-03-18 06:57:00.734 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 06:57:00.734 -07 000000462 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 06:57:00.764 -07 000000479 INF: FPGA: Xmit ZDACW 28573\n [Z Motor]
17-03-18 06:57:00.764 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:57:00.774 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:00.774 -07 000000479 INF: FPGA: 'ZDACW 28573' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 06:57:00.774 -07 000000626 INF: FPGA: Recv YRDPOS 137976
17-03-18 06:57:00.784 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 40 ms overall
17-03-18 06:57:00.784 -07 000000462 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:00.784 -07 000000462 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:57:00.784 -07 000000462 INF: Y Motor: Moving 1346 steps-24
17-03-18 06:57:00.794 -07 000000479 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:00.794 -07 000000447 INF: FPGA: Recv ZDACR 28573
17-03-18 06:57:00.804 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:57:00.804 -07 000000479 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:57:00.804 -07 000000479 INF: Z Motor: MoveAbsStepped took 62 ms (did NOT wait for settling yet))
17-03-18 06:57:00.924 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2603919736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 06:57:00.924 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:57:00.924 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:00.924 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2639342000, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 06:57:00.924 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 06:57:00.924 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:00.934 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:00.934 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:57:00.934 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:00.944 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 06:57:01.174 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 06:57:01.174 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 06:57:01.234 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:01.234 -07 000000591 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:57:01.244 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:57:01.244 -07 000000462 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:01.244 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 06:57:01.244 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.120 mm/sec
17-03-18 06:57:01.904 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:57:01.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:57:02.194 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:02.194 -07 000000444 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:57:02.204 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:02.204 -07 000000462 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:02.234 -07 000000462 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:57:02.234 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:57:02.234 -07 000000462 INF: Y Motor: Moved to 68.2041 after 1494 ms (table move)
17-03-18 06:57:02.234 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130799 mm (DAC = 28573)
17-03-18 06:57:02.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.234 -07 000000585 INF: FPGA: Recv ZSGSRD 29658
17-03-18 06:57:02.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:57:02.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.244 -07 000000462 INF: FPGA: Recv ZSGSRD 29655
17-03-18 06:57:02.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.254 -07 000000585 INF: FPGA: Recv ZSGSRD 29646
17-03-18 06:57:02.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.264 -07 000000462 INF: FPGA: Recv ZSGSRD 29641
17-03-18 06:57:02.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.274 -07 000000585 INF: FPGA: Recv ZSGSRD 29646
17-03-18 06:57:02.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.284 -07 000000462 INF: FPGA: Recv ZSGSRD 29651
17-03-18 06:57:02.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.294 -07 000000479 INF: FPGA: Recv ZSGSRD 29653
17-03-18 06:57:02.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.304 -07 000000591 INF: FPGA: Recv ZSGSRD 29652
17-03-18 06:57:02.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.314 -07 000000585 INF: FPGA: Recv ZSGSRD 29656
17-03-18 06:57:02.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.324 -07 000000012 INF: FPGA: Recv ZSGSRD 29654
17-03-18 06:57:02.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:02.334 -07 000000585 INF: FPGA: Recv ZPIEZORD 25194
17-03-18 06:57:02.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.344 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.360 V. Piezo Error = -9.8 V.
17-03-18 06:57:02.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29651 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29652 (-130.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29641 (-130.0 uncal um), Max = 29658 (-130.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:57:02.344 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29651, posNoise = 7, negNoise = 10
17-03-18 06:57:02.344 -07 000000610 INF: Z Motor: After move to -0.130799, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:02.344 -07 000000610 INF: Z Motor: Settle wait time = 1498 ms, measure time = 104 ms (allowed 150 ms), total time = 1602 ms
17-03-18 06:57:02.344 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:57:02.394 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1656 ms
17-03-18 06:57:02.394 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:57:02.394 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.130807666226489. ----------
17-03-18 06:57:02.394 -07 000000610 INF: Cycle	155	Tile	11	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:57:02.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28396, sync = True, waitForSettling = True)
17-03-18 06:57:02.394 -07 000000610 INF: Z Motor: Moving to -0.129989 mm, started at -0.130808 mm, distance = 0.82 um
17-03-18 06:57:02.394 -07 000000610 INF: FPGA: Xmit ZDACW 28396\n [Z Motor]
17-03-18 06:57:02.394 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:57:02.404 -07 000000610 INF: FPGA: 'ZDACW 28396' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:57:02.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:02.404 -07 000000444 INF: FPGA: Recv ZDACR 28396
17-03-18 06:57:02.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:57:02.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.564 -07 000000444 INF: FPGA: Recv ZSGSRD 29528
17-03-18 06:57:02.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:02.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.574 -07 000000444 INF: FPGA: Recv ZSGSRD 29523
17-03-18 06:57:02.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.584 -07 000000591 INF: FPGA: Recv ZSGSRD 29524
17-03-18 06:57:02.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.594 -07 000000444 INF: FPGA: Recv ZSGSRD 29517
17-03-18 06:57:02.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.604 -07 000000591 INF: FPGA: Recv ZSGSRD 29524
17-03-18 06:57:02.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.614 -07 000000444 INF: FPGA: Recv ZSGSRD 29529
17-03-18 06:57:02.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.624 -07 000000591 INF: FPGA: Recv ZSGSRD 29521
17-03-18 06:57:02.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.634 -07 000000444 INF: FPGA: Recv ZSGSRD 29523
17-03-18 06:57:02.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.644 -07 000000444 INF: FPGA: Recv ZSGSRD 29528
17-03-18 06:57:02.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:02.654 -07 000000444 INF: FPGA: Recv ZSGSRD 29526
17-03-18 06:57:02.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:02.664 -07 000000444 INF: FPGA: Recv ZPIEZORD 25014
17-03-18 06:57:02.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:02.674 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -9.9 V.
17-03-18 06:57:02.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29524 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29524 (-129.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29517 (-129.2 uncal um), Max = 29529 (-129.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:57:02.674 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29524, posNoise = 5, negNoise = 7
17-03-18 06:57:02.674 -07 000000610 INF: Z Motor: After move to -0.129989, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:02.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 06:57:02.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:57:02.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:57:02.674 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:57:02.674 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:57:02.674 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:57:02.674 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:57:02.674 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:57:02.674 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:57:02.674 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:57:02.674 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:57:02.674 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:57:02.674 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:57:02.684 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:57:02.684 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:57:02.684 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:57:02.684 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:57:02.694 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:57:02.694 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:57:02.694 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:57:02.694 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:57:02.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28573 150\n [Camera]
17-03-18 06:57:02.904 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:57:03.374 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:57:03.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:57:03.374 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:03.374 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:03.374 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:57:03.374 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:57:03.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:57:03.374 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:03.504 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:03.504 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 06:57:03.754 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 06:57:03.754 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:57:03.754 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:03.754 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:03.754 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 06:57:03.764 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28573 855
17-03-18 06:57:03.764 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:57:03.874 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 06:57:03.874 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 06:57:03.874 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:03.874 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:03.884 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-18 06:57:03.934 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:57:03.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:57:03.944 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:03.944 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:57:03.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:57:03.944 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:03.944 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:03.944 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:57:03.944 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:03.944 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-18 06:57:04.134 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-18 06:57:04.134 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:57:04.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28573 150' command took 2 ms to send, 1421 ms to get response, and 1430 ms overall
17-03-18 06:57:04.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:57:04.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.129991791284486. ------
17-03-18 06:57:04.134 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:57:04.134 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13652 mm
17-03-18 06:57:04.134 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:57:04.144 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:57:04.144 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:57:04.144 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:57:04.144 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 06:57:04.144 -07 000000447 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 06:57:04.144 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29824, sync = True, waitForSettling = False)
17-03-18 06:57:04.144 -07 000000462 INF: Z Motor: Moving to -0.136526 mm, started at -0.129992 mm, distance = -6.53 um
17-03-18 06:57:04.154 -07 000000462 INF: FPGA: Xmit ZDACW 29824\n [Z Motor]
17-03-18 06:57:04.154 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:57:04.164 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:04.164 -07 000000462 INF: FPGA: 'ZDACW 29824' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 06:57:04.164 -07 000000480 INF: FPGA: Recv YRDPOS 139682
17-03-18 06:57:04.174 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 06:57:04.174 -07 000000447 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:04.174 -07 000000447 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:57:04.174 -07 000000447 INF: Y Motor: Moving 1342 steps-17
17-03-18 06:57:04.174 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:04.174 -07 000000626 INF: FPGA: Recv ZDACR 29824
17-03-18 06:57:04.184 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:57:04.184 -07 000000462 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 06:57:04.184 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:57:04.324 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:57:04.324 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:57:04.324 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:04.334 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 06:57:04.334 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:57:04.334 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:04.334 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 06:57:04.334 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:57:04.334 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:57:04.344 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:57:04.344 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 06:57:04.344 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 06:57:04.554 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 06:57:04.554 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 06:57:04.614 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:04.614 -07 000000480 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:57:04.624 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:57:04.624 -07 000000447 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:04.624 -07 000000447 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 06:57:04.624 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.161 mm/sec
17-03-18 06:57:05.574 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:05.574 -07 000000626 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:57:05.584 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:05.584 -07 000000447 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:05.614 -07 000000447 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:57:05.614 -07 000000447 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:57:05.614 -07 000000447 INF: Y Motor: Moved to 69.0264 after 1470 ms (table move)
17-03-18 06:57:05.614 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136526 mm (DAC = 29824)
17-03-18 06:57:05.614 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:05.614 -07 000000462 INF: FPGA: Recv ZSGSRD 30545
17-03-18 06:57:05.624 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:57:05.624 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:05.624 -07 000000626 INF: FPGA: Recv ZSGSRD 30537
17-03-18 06:57:05.634 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:05.634 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:05.634 -07 000000447 INF: FPGA: Recv ZSGSRD 30541
17-03-18 06:57:05.644 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:05.644 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:05.644 -07 000000461 INF: FPGA: Recv ZSGSRD 30534
17-03-18 06:57:05.654 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:05.654 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:05.654 -07 000000444 INF: FPGA: Recv ZSGSRD 30541
17-03-18 06:57:05.664 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:05.664 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:05.664 -07 000000461 INF: FPGA: Recv ZSGSRD 30546
17-03-18 06:57:05.674 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:05.674 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:05.674 -07 000000462 INF: FPGA: Recv ZSGSRD 30543
17-03-18 06:57:05.684 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:05.684 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:05.684 -07 000000447 INF: FPGA: Recv ZSGSRD 30549
17-03-18 06:57:05.694 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:05.694 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:05.694 -07 000000462 INF: FPGA: Recv ZSGSRD 30544
17-03-18 06:57:05.704 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:05.704 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:05.704 -07 000000591 INF: FPGA: Recv ZSGSRD 30541
17-03-18 06:57:05.714 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:05.714 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:05.714 -07 000000444 INF: FPGA: Recv ZPIEZORD 26370
17-03-18 06:57:05.724 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:05.724 -07 000000430 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.551 V. Piezo Error = -9.2 V.
17-03-18 06:57:05.724 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30542 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30542 (-135.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30534 (-135.7 uncal um), Max = 30549 (-135.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:57:05.724 -07 000000430 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30542, posNoise = 7, negNoise = 8
17-03-18 06:57:05.724 -07 000000430 INF: Z Motor: After move to -0.136526, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:05.724 -07 000000430 INF: Z Motor: Settle wait time = 1474 ms, measure time = 105 ms (allowed 150 ms), total time = 1579 ms
17-03-18 06:57:05.724 -07 000000430 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:57:05.774 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 06:57:05.774 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:57:05.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:57:05.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:57:05.774 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:57:05.774 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:57:05.774 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:57:05.774 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:57:05.774 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:57:05.774 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:57:05.784 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 06:57:05.784 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:57:05.794 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 06:57:05.794 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 06:57:05.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:57:05.844 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:57:07.144 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:57:07.144 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:57:07.144 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 06:57:07.144 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:57:07.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:57:07.144 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.974486,
17-03-18 06:57:07.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:57:07.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 1341 ms to get response, and 1344 ms overall
17-03-18 06:57:07.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-18 06:57:07.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 06:57:07.254 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:07.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:57:07.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 06:57:07.264 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:57:07.344 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:57:07.344 -07 000000591 INF: Autofocus start
17-03-18 06:57:07.344 -07 000000591 INF: MeasureProfile start
17-03-18 06:57:07.344 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:57:07.354 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:57:07.354 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:57:07.364 -07 000000591 INF: MeasureProfile done
17-03-18 06:57:07.364 -07 000000591 INF: X=-64  Z correction [um]=-0.3149434
17-03-18 06:57:07.364 -07 000000591 INF: Autofocus finished
17-03-18 06:57:07.554 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:57:07.554 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 06:57:07.554 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136531639244798. ----------
17-03-18 06:57:07.554 -07 000000610 INF: Cycle	155	Tile	12	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:57:07.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28268, sync = True, waitForSettling = True)
17-03-18 06:57:07.564 -07 000000610 INF: Z Motor: Moving to -0.129403 mm, started at -0.136532 mm, distance = 7.13 um
17-03-18 06:57:07.564 -07 000000610 INF: FPGA: Xmit ZDACW 28268\n [Z Motor]
17-03-18 06:57:07.564 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:57:07.574 -07 000000610 INF: FPGA: 'ZDACW 28268' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:57:07.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:07.574 -07 000000626 INF: FPGA: Recv ZDACR 28268
17-03-18 06:57:07.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:07.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:57:07.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:07.734 -07 000000626 INF: FPGA: Recv ZSGSRD 29432
17-03-18 06:57:07.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:07.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:07.744 -07 000000444 INF: FPGA: Recv ZSGSRD 29432
17-03-18 06:57:07.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:07.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:07.754 -07 000000626 INF: FPGA: Recv ZSGSRD 29429
17-03-18 06:57:07.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:07.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:07.764 -07 000000430 INF: FPGA: Recv ZSGSRD 29434
17-03-18 06:57:07.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:07.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:07.774 -07 000000430 INF: FPGA: Recv ZSGSRD 29432
17-03-18 06:57:07.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:07.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:07.784 -07 000000444 INF: FPGA: Recv ZSGSRD 29436
17-03-18 06:57:07.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:07.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:07.794 -07 000000462 INF: FPGA: Recv ZSGSRD 29428
17-03-18 06:57:07.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:07.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:07.804 -07 000000444 INF: FPGA: Recv ZSGSRD 29432
17-03-18 06:57:07.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:07.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:07.814 -07 000000626 INF: FPGA: Recv ZSGSRD 29434
17-03-18 06:57:07.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:07.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:07.824 -07 000000444 INF: FPGA: Recv ZSGSRD 29437
17-03-18 06:57:07.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:07.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:07.834 -07 000000462 INF: FPGA: Recv ZPIEZORD 24953
17-03-18 06:57:07.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:07.844 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.313 V. Piezo Error = -9.8 V.
17-03-18 06:57:07.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29433 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29432 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29428 (-128.6 uncal um), Max = 29437 (-128.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:57:07.844 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29433, posNoise = 4, negNoise = 5
17-03-18 06:57:07.844 -07 000000610 INF: Z Motor: After move to -0.129403, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:07.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 06:57:07.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:57:07.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:57:07.844 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:57:07.854 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:57:07.854 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:57:07.854 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:57:07.854 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:57:07.854 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:57:07.854 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-18 06:57:07.854 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:57:07.854 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 06:57:07.854 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:57:07.854 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:57:07.854 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:57:07.854 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:57:07.864 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:57:07.874 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:57:07.874 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 25 ms.
17-03-18 06:57:07.874 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:57:07.874 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 26 ms.
17-03-18 06:57:07.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28444 150\n [Camera]
17-03-18 06:57:08.074 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:57:08.544 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:57:08.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:57:08.544 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:08.544 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:08.544 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:57:08.554 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:57:08.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:57:08.554 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:08.554 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:08.554 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) start.
17-03-18 06:57:08.744 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28444 855
17-03-18 06:57:08.894 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1006
17-03-18 06:57:08.944 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:57:08.944 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:57:08.944 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:08.954 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:57:08.954 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:57:08.954 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:08.954 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:08.954 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:57:08.954 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:08.964 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:57:09.114 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:57:09.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:57:09.114 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:09.224 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:57:09.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:57:09.234 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:09.234 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:09.234 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2639342000, 0x0, 391868352) start.
17-03-18 06:57:09.234 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:09.234 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 06:57:09.304 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:57:09.304 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:57:09.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28444 150' command took 2 ms to send, 1419 ms to get response, and 1431 ms overall
17-03-18 06:57:09.314 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.129872
17-03-18 06:57:09.314 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.12987 mm
17-03-18 06:57:09.314 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:57:09.314 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 06:57:09.314 -07 000000455 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-18 06:57:09.314 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:09.314 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 28371, sync = True, waitForSettling = False)
17-03-18 06:57:09.314 -07 000000591 INF: Z Motor: Moving to -0.129874 mm, started at -0.129407 mm, distance = -0.47 um
17-03-18 06:57:09.314 -07 000000012 INF: FPGA: Recv YRDPOS 141366
17-03-18 06:57:09.324 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:57:09.324 -07 000000455 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:09.324 -07 000000455 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:57:09.324 -07 000000455 INF: Y Motor: Moving 1354 steps-33
17-03-18 06:57:09.324 -07 000000591 INF: FPGA: Xmit ZDACW 28371\n [Z Motor]
17-03-18 06:57:09.324 -07 000000479 INF: FPGA: Recv ZDACW
17-03-18 06:57:09.334 -07 000000591 INF: FPGA: 'ZDACW 28371' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:57:09.334 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:09.334 -07 000000444 INF: FPGA: Recv ZDACR 28371
17-03-18 06:57:09.344 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:09.344 -07 000000591 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 06:57:09.344 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:57:09.634 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 06:57:09.634 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:57:09.634 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:09.634 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2639342000, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 06:57:09.634 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:57:09.634 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:09.634 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:09.634 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:09.634 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 06:57:09.644 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 06:57:09.714 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:57:09.714 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 06:57:09.764 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:09.774 -07 000000626 INF: FPGA: Recv YRDPOS 143078
17-03-18 06:57:09.774 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:57:09.774 -07 000000455 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:09.774 -07 000000455 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:57:09.774 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-18 06:57:10.724 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:10.724 -07 000000606 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:57:10.734 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:10.734 -07 000000455 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:10.764 -07 000000455 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:57:10.764 -07 000000455 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:57:10.764 -07 000000455 INF: Y Motor: Moved to 69.8628 after 1450 ms (table move)
17-03-18 06:57:10.764 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129874 mm (DAC = 28371)
17-03-18 06:57:10.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:10.764 -07 000000455 INF: FPGA: Recv ZSGSRD 29512
17-03-18 06:57:10.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:57:10.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:10.774 -07 000000455 INF: FPGA: Recv ZSGSRD 29506
17-03-18 06:57:10.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:10.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:10.784 -07 000000462 INF: FPGA: Recv ZSGSRD 29512
17-03-18 06:57:10.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:10.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:10.794 -07 000000444 INF: FPGA: Recv ZSGSRD 29496
17-03-18 06:57:10.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:10.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:10.804 -07 000000012 INF: FPGA: Recv ZSGSRD 29502
17-03-18 06:57:10.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:10.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:10.814 -07 000000462 INF: FPGA: Recv ZSGSRD 29508
17-03-18 06:57:10.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:10.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:10.824 -07 000000462 INF: FPGA: Recv ZSGSRD 29507
17-03-18 06:57:10.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:10.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:10.834 -07 000000462 INF: FPGA: Recv ZSGSRD 29506
17-03-18 06:57:10.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:10.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:10.844 -07 000000462 INF: FPGA: Recv ZSGSRD 29506
17-03-18 06:57:10.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:10.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:10.854 -07 000000626 INF: FPGA: Recv ZSGSRD 29510
17-03-18 06:57:10.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:10.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:10.864 -07 000000444 INF: FPGA: Recv ZPIEZORD 25080
17-03-18 06:57:10.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:10.874 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.329 V. Piezo Error = -9.7 V.
17-03-18 06:57:10.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29506 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29506 (-129.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29496 (-129.0 uncal um), Max = 29512 (-129.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 06:57:10.874 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29506, posNoise = 6, negNoise = 10
17-03-18 06:57:10.874 -07 000000610 INF: Z Motor: After move to -0.129874, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:10.874 -07 000000610 INF: Z Motor: Settle wait time = 1452 ms, measure time = 104 ms (allowed 150 ms), total time = 1556 ms
17-03-18 06:57:10.874 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 06:57:10.924 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 06:57:10.924 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:57:10.924 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.129876155465934. ----------
17-03-18 06:57:10.924 -07 000000610 INF: Cycle	155	Tile	13	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:57:10.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28194, sync = True, waitForSettling = True)
17-03-18 06:57:10.924 -07 000000610 INF: Z Motor: Moving to -0.129064 mm, started at -0.129876 mm, distance = 0.81 um
17-03-18 06:57:10.924 -07 000000610 INF: FPGA: Xmit ZDACW 28194\n [Z Motor]
17-03-18 06:57:10.934 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:57:10.934 -07 000000610 INF: FPGA: 'ZDACW 28194' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:57:10.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:10.934 -07 000000462 INF: FPGA: Recv ZDACR 28194
17-03-18 06:57:10.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:10.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:57:11.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:11.094 -07 000000462 INF: FPGA: Recv ZSGSRD 29379
17-03-18 06:57:11.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:11.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:11.104 -07 000000462 INF: FPGA: Recv ZSGSRD 29380
17-03-18 06:57:11.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:11.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:11.114 -07 000000462 INF: FPGA: Recv ZSGSRD 29377
17-03-18 06:57:11.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:11.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:11.124 -07 000000462 INF: FPGA: Recv ZSGSRD 29379
17-03-18 06:57:11.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:11.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:11.134 -07 000000585 INF: FPGA: Recv ZSGSRD 29382
17-03-18 06:57:11.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:11.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:11.144 -07 000000585 INF: FPGA: Recv ZSGSRD 29383
17-03-18 06:57:11.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:11.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:11.154 -07 000000585 INF: FPGA: Recv ZSGSRD 29378
17-03-18 06:57:11.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:11.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:11.164 -07 000000585 INF: FPGA: Recv ZSGSRD 29380
17-03-18 06:57:11.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:11.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:11.174 -07 000000606 INF: FPGA: Recv ZSGSRD 29385
17-03-18 06:57:11.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:11.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:11.184 -07 000000012 INF: FPGA: Recv ZSGSRD 29379
17-03-18 06:57:11.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:11.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:11.194 -07 000000606 INF: FPGA: Recv ZPIEZORD 24870
17-03-18 06:57:11.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:11.204 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.302 V. Piezo Error = -9.9 V.
17-03-18 06:57:11.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29380 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29380 (-128.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29377 (-128.3 uncal um), Max = 29385 (-128.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:57:11.204 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29380, posNoise = 5, negNoise = 3
17-03-18 06:57:11.204 -07 000000610 INF: Z Motor: After move to -0.129064, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:11.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:57:11.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:57:11.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:57:11.204 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:57:11.204 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:57:11.204 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:57:11.204 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:57:11.204 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:57:11.204 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:57:11.204 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:57:11.204 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:57:11.214 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:57:11.214 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:57:11.214 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:57:11.214 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:57:11.214 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:57:11.214 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:57:11.224 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:57:11.224 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:57:11.224 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:57:11.224 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:57:11.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28371 150\n [Camera]
17-03-18 06:57:11.424 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:57:11.894 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:57:11.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:57:11.894 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:11.894 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:57:11.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:57:11.904 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:11.904 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:11.904 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:57:11.904 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:57:11.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:57:11.914 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:11.914 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) start.
17-03-18 06:57:12.094 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28371 855
17-03-18 06:57:12.234 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:57:12.284 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:57:12.284 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:57:12.284 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:12.284 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:12.284 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 06:57:12.284 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:57:12.284 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:57:12.284 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:12.294 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:12.304 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 06:57:12.464 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:57:12.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:57:12.464 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:12.464 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:57:12.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:57:12.464 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:12.464 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:12.464 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 06:57:12.464 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:12.464 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:57:12.504 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.979922,
17-03-18 06:57:12.654 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:57:12.654 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:57:12.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28371 150' command took 2 ms to send, 1426 ms to get response, and 1433 ms overall
17-03-18 06:57:12.654 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.129496
17-03-18 06:57:12.654 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.12950 mm
17-03-18 06:57:12.654 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:57:12.784 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 06:57:12.784 -07 000000480 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 06:57:12.784 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:12.784 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 28288, sync = True, waitForSettling = False)
17-03-18 06:57:12.784 -07 000000447 INF: Z Motor: Moving to -0.129494 mm, started at -0.129067 mm, distance = -0.43 um
17-03-18 06:57:12.794 -07 000000447 INF: FPGA: Xmit ZDACW 28288\n [Z Motor]
17-03-18 06:57:12.794 -07 000000576 INF: FPGA: Recv YRDPOS 143079
17-03-18 06:57:12.794 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:57:12.794 -07 000000480 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:12.794 -07 000000480 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:57:12.794 -07 000000480 INF: Y Motor: Moving 1344 steps-21
17-03-18 06:57:12.794 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:57:12.804 -07 000000447 INF: FPGA: 'ZDACW 28288' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:57:12.804 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:57:12.824 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:12.824 -07 000000576 INF: FPGA: Recv ZDACR 28288
17-03-18 06:57:12.834 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:57:12.834 -07 000000447 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 06:57:12.864 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 06:57:12.864 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 06:57:12.864 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:12.864 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 06:57:12.864 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 06:57:12.864 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:12.864 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:12.864 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 06:57:12.874 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:12.874 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 06:57:13.174 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 06:57:13.174 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 06:57:13.234 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:13.234 -07 000000462 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:57:13.244 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:57:13.244 -07 000000480 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:13.244 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:57:13.244 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.176 mm/sec
17-03-18 06:57:14.194 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:14.194 -07 000000606 INF: FPGA: Recv YRDPOS 144768
17-03-18 06:57:14.204 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.204 -07 000000480 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:14.234 -07 000000480 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:57:14.234 -07 000000480 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:57:14.234 -07 000000480 INF: Y Motor: Moved to 70.6875 after 1445 ms (table move)
17-03-18 06:57:14.234 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129494 mm (DAC = 28288)
17-03-18 06:57:14.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.234 -07 000000462 INF: FPGA: Recv ZSGSRD 29449
17-03-18 06:57:14.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:57:14.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.244 -07 000000462 INF: FPGA: Recv ZSGSRD 29447
17-03-18 06:57:14.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.254 -07 000000480 INF: FPGA: Recv ZSGSRD 29441
17-03-18 06:57:14.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.264 -07 000000462 INF: FPGA: Recv ZSGSRD 29439
17-03-18 06:57:14.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.274 -07 000000462 INF: FPGA: Recv ZSGSRD 29443
17-03-18 06:57:14.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.284 -07 000000462 INF: FPGA: Recv ZSGSRD 29450
17-03-18 06:57:14.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.294 -07 000000461 INF: FPGA: Recv ZSGSRD 29444
17-03-18 06:57:14.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.304 -07 000000461 INF: FPGA: Recv ZSGSRD 29456
17-03-18 06:57:14.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.314 -07 000000626 INF: FPGA: Recv ZSGSRD 29448
17-03-18 06:57:14.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.324 -07 000000461 INF: FPGA: Recv ZSGSRD 29452
17-03-18 06:57:14.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:14.334 -07 000000626 INF: FPGA: Recv ZPIEZORD 25023
17-03-18 06:57:14.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.344 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.316 V. Piezo Error = -9.7 V.
17-03-18 06:57:14.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29447 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29448 (-128.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29439 (-128.7 uncal um), Max = 29456 (-128.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:57:14.344 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29447, posNoise = 9, negNoise = 8
17-03-18 06:57:14.344 -07 000000610 INF: Z Motor: After move to -0.129494, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:14.344 -07 000000610 INF: Z Motor: Settle wait time = 1447 ms, measure time = 105 ms (allowed 150 ms), total time = 1552 ms
17-03-18 06:57:14.344 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 06:57:14.394 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1731 ms
17-03-18 06:57:14.394 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:57:14.394 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.12949712694957. ----------
17-03-18 06:57:14.394 -07 000000610 INF: Cycle	155	Tile	14	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:57:14.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28112, sync = True, waitForSettling = True)
17-03-18 06:57:14.394 -07 000000610 INF: Z Motor: Moving to -0.128688 mm, started at -0.129497 mm, distance = 0.81 um
17-03-18 06:57:14.394 -07 000000610 INF: FPGA: Xmit ZDACW 28112\n [Z Motor]
17-03-18 06:57:14.394 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 06:57:14.404 -07 000000610 INF: FPGA: 'ZDACW 28112' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:57:14.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:14.404 -07 000000591 INF: FPGA: Recv ZDACR 28112
17-03-18 06:57:14.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:57:14.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.564 -07 000000606 INF: FPGA: Recv ZSGSRD 29317
17-03-18 06:57:14.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.574 -07 000000591 INF: FPGA: Recv ZSGSRD 29330
17-03-18 06:57:14.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.584 -07 000000606 INF: FPGA: Recv ZSGSRD 29318
17-03-18 06:57:14.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.594 -07 000000591 INF: FPGA: Recv ZSGSRD 29321
17-03-18 06:57:14.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.604 -07 000000480 INF: FPGA: Recv ZSGSRD 29324
17-03-18 06:57:14.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.614 -07 000000480 INF: FPGA: Recv ZSGSRD 29323
17-03-18 06:57:14.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.624 -07 000000480 INF: FPGA: Recv ZSGSRD 29324
17-03-18 06:57:14.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.634 -07 000000447 INF: FPGA: Recv ZSGSRD 29318
17-03-18 06:57:14.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.644 -07 000000447 INF: FPGA: Recv ZSGSRD 29328
17-03-18 06:57:14.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:14.654 -07 000000480 INF: FPGA: Recv ZSGSRD 29327
17-03-18 06:57:14.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:14.664 -07 000000480 INF: FPGA: Recv ZPIEZORD 24822
17-03-18 06:57:14.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:14.674 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -9.9 V.
17-03-18 06:57:14.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29323 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29324 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29317 (-127.9 uncal um), Max = 29330 (-128.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:57:14.674 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29323, posNoise = 7, negNoise = 6
17-03-18 06:57:14.674 -07 000000610 INF: Z Motor: After move to -0.128688, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:14.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 06:57:14.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:57:14.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:57:14.674 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:57:14.674 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:57:14.674 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:57:14.674 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:57:14.674 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:57:14.674 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:57:14.674 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:57:14.674 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:57:14.674 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:57:14.674 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:57:14.684 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:57:14.684 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:57:14.684 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:57:14.684 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:57:14.694 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 06:57:14.694 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:57:14.694 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 06:57:14.694 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 06:57:14.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28288 150\n [Camera]
17-03-18 06:57:14.894 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:57:15.364 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:57:15.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:57:15.364 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:15.374 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:57:15.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:57:15.374 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:15.374 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:15.374 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-18 06:57:15.374 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:15.374 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:57:15.744 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 06:57:15.744 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 06:57:15.744 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:15.754 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:57:15.754 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 06:57:15.754 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:15.754 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:15.754 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 06:57:15.754 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:15.764 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 06:57:15.764 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28288 855
17-03-18 06:57:15.764 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:57:15.934 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:57:15.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:57:15.934 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:57:15.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:57:15.944 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:15.944 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:15.944 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:15.944 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) start.
17-03-18 06:57:15.944 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:15.944 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:57:16.324 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2603919736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:57:16.324 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:57:16.324 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:16.324 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 06:57:16.324 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 06:57:16.324 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:16.324 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:16.324 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:16.324 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 06:57:16.334 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 06:57:16.334 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:57:16.334 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:57:16.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28288 150' command took 2 ms to send, 1628 ms to get response, and 1640 ms overall
17-03-18 06:57:16.344 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129327
17-03-18 06:57:16.344 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12933 mm
17-03-18 06:57:16.344 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:57:16.344 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 06:57:16.344 -07 000000447 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 06:57:16.344 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:16.344 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 28251, sync = True, waitForSettling = False)
17-03-18 06:57:16.344 -07 000000480 INF: Z Motor: Moving to -0.129325 mm, started at -0.128701 mm, distance = -0.62 um
17-03-18 06:57:16.354 -07 000000480 INF: FPGA: Xmit ZDACW 28251\n [Z Motor]
17-03-18 06:57:17.314 -07 000000455 INF: FPGA: Recv YRDPOS 144769
17-03-18 06:57:17.314 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 06:57:17.314 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:57:17.314 -07 000000480 INF: FPGA: 'ZDACW 28251' command took 0 ms to send, 951 ms to get response, and 966 ms overall
17-03-18 06:57:17.314 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:17.314 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 961 ms to get response, and 966 ms overall
17-03-18 06:57:17.314 -07 000000447 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:17.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:57:17.314 -07 000000444 INF: FPGA: Recv ZDACR 28251
17-03-18 06:57:17.314 -07 000000447 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:57:17.314 -07 000000447 INF: Y Motor: Moving 1351 steps-31
17-03-18 06:57:17.324 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:57:17.324 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:57:17.324 -07 000000480 INF: Z Motor: MoveAbsStepped took 975 ms (did NOT wait for settling yet))
17-03-18 06:57:17.694 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 06:57:17.694 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-18 06:57:17.754 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:17.754 -07 000000455 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:57:17.764 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:17.764 -07 000000447 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:17.764 -07 000000447 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 06:57:17.764 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.845 mm, average velocity = 2.224 mm/sec
17-03-18 06:57:17.874 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.007176,
17-03-18 06:57:18.714 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:18.714 -07 000000430 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:57:18.724 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:18.724 -07 000000447 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:18.754 -07 000000447 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:57:18.754 -07 000000447 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:57:18.754 -07 000000447 INF: Y Motor: Moved to 71.5181 after 2410 ms (table move)
17-03-18 06:57:18.754 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129325 mm (DAC = 28251)
17-03-18 06:57:18.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:18.764 -07 000000585 INF: FPGA: Recv ZSGSRD 29416
17-03-18 06:57:18.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:57:18.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:18.764 -07 000000585 INF: FPGA: Recv ZSGSRD 29431
17-03-18 06:57:18.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:57:18.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:18.774 -07 000000626 INF: FPGA: Recv ZSGSRD 29423
17-03-18 06:57:18.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:18.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:18.784 -07 000000462 INF: FPGA: Recv ZSGSRD 29420
17-03-18 06:57:18.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:18.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:18.794 -07 000000626 INF: FPGA: Recv ZSGSRD 29420
17-03-18 06:57:18.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:18.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:18.804 -07 000000447 INF: FPGA: Recv ZSGSRD 29413
17-03-18 06:57:18.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:18.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:18.814 -07 000000479 INF: FPGA: Recv ZSGSRD 29422
17-03-18 06:57:18.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:18.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:18.824 -07 000000447 INF: FPGA: Recv ZSGSRD 29420
17-03-18 06:57:18.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:18.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:18.834 -07 000000479 INF: FPGA: Recv ZSGSRD 29424
17-03-18 06:57:18.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:18.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:18.844 -07 000000480 INF: FPGA: Recv ZSGSRD 29430
17-03-18 06:57:18.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:18.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:18.854 -07 000000576 INF: FPGA: Recv ZPIEZORD 24958
17-03-18 06:57:18.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:18.864 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.8 V.
17-03-18 06:57:18.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29422 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29421 (-128.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29413 (-128.5 uncal um), Max = 29431 (-128.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 06:57:18.864 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29422, posNoise = 9, negNoise = 9
17-03-18 06:57:18.864 -07 000000610 INF: Z Motor: After move to -0.129325, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:18.864 -07 000000610 INF: Z Motor: Settle wait time = 2412 ms, measure time = 103 ms (allowed 150 ms), total time = 2515 ms
17-03-18 06:57:18.864 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:57:18.914 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2567 ms
17-03-18 06:57:18.914 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:57:18.914 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.129336521646026. ----------
17-03-18 06:57:18.914 -07 000000610 INF: Cycle	155	Tile	15	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:57:18.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28075, sync = True, waitForSettling = True)
17-03-18 06:57:18.914 -07 000000610 INF: Z Motor: Moving to -0.128519 mm, started at -0.129337 mm, distance = 0.82 um
17-03-18 06:57:18.914 -07 000000610 INF: FPGA: Xmit ZDACW 28075\n [Z Motor]
17-03-18 06:57:18.914 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 06:57:18.924 -07 000000610 INF: FPGA: 'ZDACW 28075' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:57:18.924 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:18.924 -07 000000480 INF: FPGA: Recv ZDACR 28075
17-03-18 06:57:18.934 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:18.934 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:57:19.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:19.084 -07 000000430 INF: FPGA: Recv ZSGSRD 29297
17-03-18 06:57:19.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:19.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:19.094 -07 000000437 INF: FPGA: Recv ZSGSRD 29299
17-03-18 06:57:19.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:19.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:19.104 -07 000000444 INF: FPGA: Recv ZSGSRD 29301
17-03-18 06:57:19.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:19.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:19.114 -07 000000012 INF: FPGA: Recv ZSGSRD 29298
17-03-18 06:57:19.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:19.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:19.124 -07 000000012 INF: FPGA: Recv ZSGSRD 29300
17-03-18 06:57:19.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:19.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:19.134 -07 000000012 INF: FPGA: Recv ZSGSRD 29290
17-03-18 06:57:19.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:19.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:19.144 -07 000000012 INF: FPGA: Recv ZSGSRD 29290
17-03-18 06:57:19.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:19.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:19.154 -07 000000012 INF: FPGA: Recv ZSGSRD 29290
17-03-18 06:57:19.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:19.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:19.164 -07 000000012 INF: FPGA: Recv ZSGSRD 29302
17-03-18 06:57:19.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:19.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:19.174 -07 000000012 INF: FPGA: Recv ZSGSRD 29304
17-03-18 06:57:19.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:19.184 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:19.184 -07 000000012 INF: FPGA: Recv ZPIEZORD 24784
17-03-18 06:57:19.194 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:19.194 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -9.9 V.
17-03-18 06:57:19.194 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29297 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29298 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29290 (-127.7 uncal um), Max = 29304 (-127.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:57:19.194 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29297, posNoise = 7, negNoise = 7
17-03-18 06:57:19.194 -07 000000610 INF: Z Motor: After move to -0.128519, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:19.194 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:57:19.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:57:19.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:57:19.194 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:57:19.194 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:57:19.194 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:57:19.194 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:57:19.194 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:57:19.194 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:57:19.194 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:57:19.194 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:57:19.204 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 06:57:19.204 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:57:19.204 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:57:19.204 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:57:19.204 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:57:19.204 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:57:19.214 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 06:57:19.214 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:57:19.214 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 06:57:19.214 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 06:57:19.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28251 150\n [Camera]
17-03-18 06:57:19.414 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:57:19.884 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:57:19.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:57:19.884 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:19.884 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:19.884 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2639342000, 0x0, 391868352) start.
17-03-18 06:57:19.884 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:57:19.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:57:19.884 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:19.884 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:19.884 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 06:57:20.264 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2639342000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 06:57:20.264 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 06:57:20.264 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:20.264 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 06:57:20.264 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 06:57:20.264 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:20.274 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:20.274 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 06:57:20.274 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:20.274 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:57:20.284 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28251 855
17-03-18 06:57:20.284 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:57:20.454 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:57:20.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:57:20.454 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:20.454 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:20.454 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 06:57:20.454 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:57:20.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:57:20.454 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:20.454 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:20.454 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 06:57:20.854 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 06:57:20.864 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 06:57:20.864 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:20.864 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 06:57:20.864 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 06:57:20.864 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:20.864 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:20.864 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 06:57:20.864 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:20.874 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 06:57:20.874 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:57:20.874 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:57:20.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28251 150' command took 2 ms to send, 1657 ms to get response, and 1663 ms overall
17-03-18 06:57:20.874 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 06:57:20.884 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.128533495128306. ------
17-03-18 06:57:20.884 -07 000000479 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:57:20.884 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13487 mm
17-03-18 06:57:20.884 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:57:20.884 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 06:57:20.884 -07 000000447 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 06:57:20.884 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:57:20.884 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29462, sync = True, waitForSettling = False)
17-03-18 06:57:20.884 -07 000000591 INF: Z Motor: Moving to -0.134868 mm, started at -0.128533 mm, distance = -6.33 um
17-03-18 06:57:20.894 -07 000000479 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:57:20.894 -07 000000591 INF: FPGA: Xmit ZDACW 29462\n [Z Motor]
17-03-18 06:57:20.894 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 06:57:20.904 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:20.904 -07 000000591 INF: FPGA: 'ZDACW 29462' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 06:57:20.904 -07 000000585 INF: FPGA: Recv YRDPOS 146469
17-03-18 06:57:20.914 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 06:57:20.914 -07 000000447 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:20.914 -07 000000447 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:57:20.914 -07 000000447 INF: Y Motor: Moving 1351 steps-30
17-03-18 06:57:20.914 -07 000000479 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:57:20.924 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:20.924 -07 000000585 INF: FPGA: Recv ZDACR 29462
17-03-18 06:57:20.934 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:57:20.934 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:57:20.934 -07 000000591 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 06:57:21.114 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:57:21.114 -07 000000479 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 06:57:21.304 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 06:57:21.304 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 06:57:21.364 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:21.364 -07 000000585 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:57:21.374 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:57:21.374 -07 000000447 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:21.374 -07 000000447 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 06:57:21.374 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.122 mm/sec
17-03-18 06:57:21.904 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:57:21.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:57:22.324 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:22.324 -07 000000585 INF: FPGA: Recv YRDPOS 148170
17-03-18 06:57:22.334 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:22.334 -07 000000447 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:22.364 -07 000000447 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:57:22.364 -07 000000447 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:57:22.364 -07 000000447 INF: Y Motor: Moved to 72.3486 after 1477 ms (table move)
17-03-18 06:57:22.364 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134868 mm (DAC = 29462)
17-03-18 06:57:22.364 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:22.374 -07 000000626 INF: FPGA: Recv ZSGSRD 30283
17-03-18 06:57:22.374 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:57:22.374 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:22.374 -07 000000626 INF: FPGA: Recv ZSGSRD 30293
17-03-18 06:57:22.384 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:57:22.384 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:22.384 -07 000000576 INF: FPGA: Recv ZSGSRD 30278
17-03-18 06:57:22.394 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:22.394 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:22.394 -07 000000012 INF: FPGA: Recv ZSGSRD 30276
17-03-18 06:57:22.404 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:22.404 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:22.404 -07 000000479 INF: FPGA: Recv ZSGSRD 30282
17-03-18 06:57:22.414 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:22.414 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:22.414 -07 000000461 INF: FPGA: Recv ZSGSRD 30284
17-03-18 06:57:22.424 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:22.424 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:22.424 -07 000000437 INF: FPGA: Recv ZSGSRD 30284
17-03-18 06:57:22.434 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:22.434 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:22.434 -07 000000437 INF: FPGA: Recv ZSGSRD 30281
17-03-18 06:57:22.444 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:22.444 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:22.444 -07 000000437 INF: FPGA: Recv ZSGSRD 30289
17-03-18 06:57:22.454 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:22.454 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:22.454 -07 000000626 INF: FPGA: Recv ZSGSRD 30283
17-03-18 06:57:22.464 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:22.464 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:22.464 -07 000000626 INF: FPGA: Recv ZPIEZORD 26117
17-03-18 06:57:22.474 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:22.474 -07 000000455 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.496 V. Piezo Error = -9.2 V.
17-03-18 06:57:22.474 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30283 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30283 (-134.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30276 (-134.0 uncal um), Max = 30293 (-134.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 06:57:22.474 -07 000000455 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30283, posNoise = 10, negNoise = 7
17-03-18 06:57:22.474 -07 000000455 INF: Z Motor: After move to -0.134868, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:22.474 -07 000000455 INF: Z Motor: Settle wait time = 1481 ms, measure time = 102 ms (allowed 150 ms), total time = 1583 ms
17-03-18 06:57:22.474 -07 000000455 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:57:22.524 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 06:57:22.524 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:57:22.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:57:22.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:57:22.524 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:57:22.524 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:57:22.524 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:57:22.524 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:57:22.524 -07 000000479 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 06:57:22.524 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:57:22.534 -07 000000479 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 06:57:22.534 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:57:22.534 -07 000000479 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 06:57:22.534 -07 000000479 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 06:57:22.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:57:22.584 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:57:22.884 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:57:22.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:57:22.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:57:22.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) start.
17-03-18 06:57:22.924 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:57:22.924 -07 000000585 INF: FPGA: Recv CAMSNAP
17-03-18 06:57:22.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 06:57:23.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 06:57:23.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:23.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:57:23.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 06:57:23.124 -07 000000437 INF: Autofocus start
17-03-18 06:57:23.124 -07 000000437 INF: MeasureProfile start
17-03-18 06:57:23.124 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:57:23.124 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:57:23.134 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:57:23.134 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:57:23.134 -07 000000437 INF: MeasureProfile done
17-03-18 06:57:23.134 -07 000000437 INF: X=16  Z correction [um]=0.0530179
17-03-18 06:57:23.134 -07 000000437 INF: Autofocus finished
17-03-18 06:57:23.244 -07 000000479 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 3.999021,
17-03-18 06:57:23.814 -07 000000447 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:57:23.814 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 670 ms to get response, and 680 ms overall
17-03-18 06:57:23.814 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.134867768300082. ----------
17-03-18 06:57:23.814 -07 000000610 INF: Cycle	155	Tile	16	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:57:23.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27986, sync = True, waitForSettling = True)
17-03-18 06:57:23.814 -07 000000610 INF: Z Motor: Moving to -0.128112 mm, started at -0.134868 mm, distance = 6.76 um
17-03-18 06:57:23.834 -07 000000610 INF: FPGA: Xmit ZDACW 27986\n [Z Motor]
17-03-18 06:57:23.834 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:57:23.844 -07 000000610 INF: FPGA: 'ZDACW 27986' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 06:57:23.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:23.854 -07 000000437 INF: FPGA: Recv ZDACR 27986
17-03-18 06:57:23.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:57:23.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:57:24.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:24.014 -07 000000447 INF: FPGA: Recv ZSGSRD 29230
17-03-18 06:57:24.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:24.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:24.024 -07 000000626 INF: FPGA: Recv ZSGSRD 29233
17-03-18 06:57:24.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:24.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:24.034 -07 000000447 INF: FPGA: Recv ZSGSRD 29232
17-03-18 06:57:24.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:24.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:24.044 -07 000000585 INF: FPGA: Recv ZSGSRD 29228
17-03-18 06:57:24.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:24.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:24.054 -07 000000479 INF: FPGA: Recv ZSGSRD 29237
17-03-18 06:57:24.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:24.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:24.064 -07 000000585 INF: FPGA: Recv ZSGSRD 29230
17-03-18 06:57:24.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:24.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:24.074 -07 000000606 INF: FPGA: Recv ZSGSRD 29231
17-03-18 06:57:24.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:24.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:24.084 -07 000000606 INF: FPGA: Recv ZSGSRD 29237
17-03-18 06:57:24.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:24.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:24.094 -07 000000576 INF: FPGA: Recv ZSGSRD 29228
17-03-18 06:57:24.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:24.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:24.104 -07 000000585 INF: FPGA: Recv ZSGSRD 29235
17-03-18 06:57:24.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:57:24.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:24.114 -07 000000437 INF: FPGA: Recv ZPIEZORD 24682
17-03-18 06:57:24.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:24.124 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -10.0 V.
17-03-18 06:57:24.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29232 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29232 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29228 (-127.3 uncal um), Max = 29237 (-127.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 06:57:24.124 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29232, posNoise = 5, negNoise = 4
17-03-18 06:57:24.124 -07 000000610 INF: Z Motor: After move to -0.128112, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:24.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 302 ms)
17-03-18 06:57:24.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:57:24.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:57:24.124 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:57:24.124 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:57:24.124 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:57:24.124 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:57:24.124 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:57:24.124 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:57:24.124 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:57:24.124 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:57:24.124 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:57:24.124 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:57:24.134 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:57:24.134 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:57:24.134 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:57:24.134 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:57:24.144 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:57:24.144 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:57:24.144 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:57:24.144 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:57:24.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28163 150\n [Camera]
17-03-18 06:57:24.344 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:57:24.814 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:57:24.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:57:24.824 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:24.824 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:24.824 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 06:57:24.824 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:57:24.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:57:24.824 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:24.824 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:24.824 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 06:57:25.014 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28163 855
17-03-18 06:57:25.164 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:57:25.224 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:57:25.224 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:57:25.224 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:25.224 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:25.224 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 06:57:25.224 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 06:57:25.224 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 06:57:25.224 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:25.224 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:25.234 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 06:57:25.384 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:57:25.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:57:25.384 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:25.384 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:25.384 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 06:57:25.394 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:57:25.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:57:25.394 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:25.394 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:25.394 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 06:57:25.574 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:57:25.584 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:57:25.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28163 150' command took 2 ms to send, 1420 ms to get response, and 1431 ms overall
17-03-18 06:57:25.584 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.128542
17-03-18 06:57:25.584 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12854 mm
17-03-18 06:57:25.584 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:57:25.704 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 28080, sync = True, waitForSettling = False)
17-03-18 06:57:25.704 -07 000000447 INF: Z Motor: Moving to -0.128542 mm, started at -0.128116 mm, distance = -0.43 um
17-03-18 06:57:25.704 -07 000000447 INF: FPGA: Xmit ZDACW 28080\n [Z Motor]
17-03-18 06:57:25.704 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 06:57:25.704 -07 000000626 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 06:57:25.704 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:57:25.714 -07 000000447 INF: FPGA: 'ZDACW 28080' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:57:25.714 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:25.714 -07 000000591 INF: FPGA: Recv YRDPOS 148171
17-03-18 06:57:25.724 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 06:57:25.724 -07 000000626 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:25.724 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:25.724 -07 000000462 INF: FPGA: Recv ZDACR 28080
17-03-18 06:57:25.724 -07 000000626 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:57:25.724 -07 000000626 INF: Y Motor: Moving 1350 steps-29
17-03-18 06:57:25.734 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:57:25.734 -07 000000447 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 06:57:25.734 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:57:25.784 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 06:57:25.784 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 06:57:25.784 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:25.784 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 06:57:25.784 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 06:57:25.794 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:25.794 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:25.794 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 06:57:25.794 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 06:57:25.804 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 06:57:26.104 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 06:57:26.104 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 383 ms overall
17-03-18 06:57:26.164 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:26.164 -07 000000447 INF: FPGA: Recv YRDPOS 149862
17-03-18 06:57:26.174 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:57:26.174 -07 000000626 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:26.174 -07 000000626 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-18 06:57:26.174 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.204 mm/sec
17-03-18 06:57:26.904 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:57:26.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:57:27.124 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:27.124 -07 000000462 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:57:27.134 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:27.134 -07 000000626 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:27.164 -07 000000626 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:57:27.164 -07 000000626 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:57:27.164 -07 000000626 INF: Y Motor: Moved to 73.1753 after 1460 ms (table move)
17-03-18 06:57:27.164 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128542 mm (DAC = 28080)
17-03-18 06:57:27.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.174 -07 000000606 INF: FPGA: Recv ZSGSRD 29297
17-03-18 06:57:27.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:57:27.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.174 -07 000000576 INF: FPGA: Recv ZSGSRD 29300
17-03-18 06:57:27.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.184 -07 000000576 INF: FPGA: Recv ZSGSRD 29298
17-03-18 06:57:27.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.194 -07 000000576 INF: FPGA: Recv ZSGSRD 29299
17-03-18 06:57:27.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.204 -07 000000576 INF: FPGA: Recv ZSGSRD 29293
17-03-18 06:57:27.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.214 -07 000000576 INF: FPGA: Recv ZSGSRD 29297
17-03-18 06:57:27.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.224 -07 000000576 INF: FPGA: Recv ZSGSRD 29302
17-03-18 06:57:27.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.234 -07 000000576 INF: FPGA: Recv ZSGSRD 29294
17-03-18 06:57:27.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.244 -07 000000576 INF: FPGA: Recv ZSGSRD 29304
17-03-18 06:57:27.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.254 -07 000000447 INF: FPGA: Recv ZSGSRD 29301
17-03-18 06:57:27.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:27.264 -07 000000447 INF: FPGA: Recv ZPIEZORD 24827
17-03-18 06:57:27.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.274 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.285 V. Piezo Error = -9.8 V.
17-03-18 06:57:27.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29298 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29298 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29293 (-127.7 uncal um), Max = 29304 (-127.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:57:27.274 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29298, posNoise = 6, negNoise = 5
17-03-18 06:57:27.274 -07 000000610 INF: Z Motor: After move to -0.128542, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:27.274 -07 000000610 INF: Z Motor: Settle wait time = 1463 ms, measure time = 103 ms (allowed 150 ms), total time = 1566 ms
17-03-18 06:57:27.274 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:57:27.324 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1737 ms
17-03-18 06:57:27.324 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:57:27.334 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.128539919340448. ----------
17-03-18 06:57:27.334 -07 000000610 INF: Cycle	155	Tile	17	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:57:27.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27903, sync = True, waitForSettling = True)
17-03-18 06:57:27.334 -07 000000610 INF: Z Motor: Moving to -0.127732 mm, started at -0.128540 mm, distance = 0.81 um
17-03-18 06:57:27.344 -07 000000610 INF: FPGA: Xmit ZDACW 27903\n [Z Motor]
17-03-18 06:57:27.344 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:57:27.354 -07 000000610 INF: FPGA: 'ZDACW 27903' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:27.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:27.354 -07 000000480 INF: FPGA: Recv ZDACR 27903
17-03-18 06:57:27.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:57:27.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.514 -07 000000576 INF: FPGA: Recv ZSGSRD 29175
17-03-18 06:57:27.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:27.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.524 -07 000000576 INF: FPGA: Recv ZSGSRD 29172
17-03-18 06:57:27.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.534 -07 000000576 INF: FPGA: Recv ZSGSRD 29177
17-03-18 06:57:27.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.544 -07 000000626 INF: FPGA: Recv ZSGSRD 29177
17-03-18 06:57:27.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:27.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.554 -07 000000585 INF: FPGA: Recv ZSGSRD 29165
17-03-18 06:57:27.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.564 -07 000000585 INF: FPGA: Recv ZSGSRD 29178
17-03-18 06:57:27.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.574 -07 000000585 INF: FPGA: Recv ZSGSRD 29173
17-03-18 06:57:27.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.584 -07 000000585 INF: FPGA: Recv ZSGSRD 29174
17-03-18 06:57:27.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.594 -07 000000585 INF: FPGA: Recv ZSGSRD 29170
17-03-18 06:57:27.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:27.604 -07 000000479 INF: FPGA: Recv ZSGSRD 29170
17-03-18 06:57:27.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:27.614 -07 000000606 INF: FPGA: Recv ZPIEZORD 24647
17-03-18 06:57:27.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:27.624 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.258 V. Piezo Error = -9.9 V.
17-03-18 06:57:27.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29173 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29174 (-127.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29165 (-126.9 uncal um), Max = 29178 (-127.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:57:27.624 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29173, posNoise = 5, negNoise = 8
17-03-18 06:57:27.624 -07 000000610 INF: Z Motor: After move to -0.127732, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:27.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 06:57:27.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:57:27.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:57:27.624 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:57:27.624 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:57:27.624 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:57:27.634 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:57:27.634 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:57:27.634 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:57:27.634 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:57:27.634 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:57:27.634 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:57:27.634 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:57:27.634 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:57:27.634 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:57:27.634 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 06:57:27.634 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:57:27.654 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:57:27.654 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:57:27.654 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:57:27.654 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:57:27.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28080 150\n [Camera]
17-03-18 06:57:27.854 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:57:28.324 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:57:28.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:57:28.324 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:28.324 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:57:28.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:57:28.334 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:28.334 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:28.334 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 06:57:28.334 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:28.334 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 06:57:28.514 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28080 855
17-03-18 06:57:28.664 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:57:28.724 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 06:57:28.724 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:57:28.724 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:57:28.724 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:28.724 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 06:57:28.724 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:28.734 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:28.734 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:57:28.734 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:28.734 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 06:57:28.894 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1233
17-03-18 06:57:28.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1233
17-03-18 06:57:28.894 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:28.904 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1233
17-03-18 06:57:28.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1233
17-03-18 06:57:28.904 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:28.904 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:28.904 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:57:28.904 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:28.904 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:57:29.084 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:57:29.084 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:57:29.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28080 150' command took 2 ms to send, 1427 ms to get response, and 1431 ms overall
17-03-18 06:57:29.084 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.127742
17-03-18 06:57:29.084 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12774 mm
17-03-18 06:57:29.084 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:57:29.094 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 27905, sync = True, waitForSettling = False)
17-03-18 06:57:29.094 -07 000000626 INF: Z Motor: Moving to -0.127741 mm, started at -0.127737 mm, distance = 0.00 um
17-03-18 06:57:29.094 -07 000000626 INF: FPGA: Xmit ZDACW 27905\n [Z Motor]
17-03-18 06:57:29.094 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 06:57:29.094 -07 000000447 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 06:57:29.094 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 06:57:29.104 -07 000000626 INF: FPGA: 'ZDACW 27905' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:57:29.104 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:29.104 -07 000000437 INF: FPGA: Recv YRDPOS 149863
17-03-18 06:57:29.114 -07 000000447 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 06:57:29.114 -07 000000447 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:29.114 -07 000000447 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:57:29.114 -07 000000447 INF: Y Motor: Moving 1356 steps-36
17-03-18 06:57:29.114 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:29.114 -07 000000012 INF: FPGA: Recv ZDACR 27905
17-03-18 06:57:29.124 -07 000000626 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:57:29.124 -07 000000626 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 06:57:29.124 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:57:29.144 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.019446,
17-03-18 06:57:29.284 -07 000000479 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:57:29.284 -07 000000479 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:57:29.284 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:29.294 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 06:57:29.294 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:57:29.294 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:29.294 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:29.294 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:57:29.294 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 06:57:29.294 -07 000000479 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:57:29.494 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:57:29.494 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:57:29.544 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:29.544 -07 000000585 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:57:29.554 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:29.554 -07 000000447 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:29.554 -07 000000447 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 06:57:29.554 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.847 mm, average velocity = 2.189 mm/sec
17-03-18 06:57:30.504 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:30.504 -07 000000606 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:57:30.514 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:57:30.514 -07 000000447 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:30.534 -07 000000447 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:57:30.534 -07 000000447 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:57:30.534 -07 000000447 INF: Y Motor: Moved to 74.0073 after 1442 ms (table move)
17-03-18 06:57:30.534 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.127741 mm (DAC = 27905)
17-03-18 06:57:30.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.544 -07 000000585 INF: FPGA: Recv ZSGSRD 29169
17-03-18 06:57:30.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:57:30.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.544 -07 000000606 INF: FPGA: Recv ZSGSRD 29182
17-03-18 06:57:30.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:57:30.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.554 -07 000000591 INF: FPGA: Recv ZSGSRD 29171
17-03-18 06:57:30.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.564 -07 000000576 INF: FPGA: Recv ZSGSRD 29176
17-03-18 06:57:30.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.574 -07 000000480 INF: FPGA: Recv ZSGSRD 29178
17-03-18 06:57:30.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.584 -07 000000606 INF: FPGA: Recv ZSGSRD 29169
17-03-18 06:57:30.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.594 -07 000000437 INF: FPGA: Recv ZSGSRD 29174
17-03-18 06:57:30.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.604 -07 000000626 INF: FPGA: Recv ZSGSRD 29178
17-03-18 06:57:30.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.614 -07 000000585 INF: FPGA: Recv ZSGSRD 29177
17-03-18 06:57:30.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.624 -07 000000606 INF: FPGA: Recv ZSGSRD 29179
17-03-18 06:57:30.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:30.634 -07 000000576 INF: FPGA: Recv ZPIEZORD 24626
17-03-18 06:57:30.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.644 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.258 V. Piezo Error = -10.0 V.
17-03-18 06:57:30.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29175 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29176 (-127.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29169 (-126.9 uncal um), Max = 29182 (-127.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:57:30.644 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29175, posNoise = 7, negNoise = 6
17-03-18 06:57:30.644 -07 000000610 INF: Z Motor: After move to -0.127741, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:30.644 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 103 ms (allowed 150 ms), total time = 1548 ms
17-03-18 06:57:30.644 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 06:57:30.694 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 06:57:30.694 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:57:30.694 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.127749741247011. ----------
17-03-18 06:57:30.694 -07 000000610 INF: Cycle	155	Tile	18	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:57:30.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27728, sync = True, waitForSettling = True)
17-03-18 06:57:30.694 -07 000000610 INF: Z Motor: Moving to -0.126931 mm, started at -0.127750 mm, distance = 0.82 um
17-03-18 06:57:30.694 -07 000000610 INF: FPGA: Xmit ZDACW 27728\n [Z Motor]
17-03-18 06:57:30.694 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:57:30.704 -07 000000610 INF: FPGA: 'ZDACW 27728' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:57:30.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:30.704 -07 000000585 INF: FPGA: Recv ZDACR 27728
17-03-18 06:57:30.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:57:30.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.864 -07 000000576 INF: FPGA: Recv ZSGSRD 29050
17-03-18 06:57:30.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.874 -07 000000606 INF: FPGA: Recv ZSGSRD 29053
17-03-18 06:57:30.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.884 -07 000000591 INF: FPGA: Recv ZSGSRD 29044
17-03-18 06:57:30.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.894 -07 000000437 INF: FPGA: Recv ZSGSRD 29048
17-03-18 06:57:30.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.904 -07 000000480 INF: FPGA: Recv ZSGSRD 29047
17-03-18 06:57:30.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.914 -07 000000012 INF: FPGA: Recv ZSGSRD 29051
17-03-18 06:57:30.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.924 -07 000000447 INF: FPGA: Recv ZSGSRD 29052
17-03-18 06:57:30.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.934 -07 000000437 INF: FPGA: Recv ZSGSRD 29044
17-03-18 06:57:30.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.944 -07 000000480 INF: FPGA: Recv ZSGSRD 29051
17-03-18 06:57:30.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:30.954 -07 000000585 INF: FPGA: Recv ZSGSRD 29049
17-03-18 06:57:30.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:30.964 -07 000000012 INF: FPGA: Recv ZPIEZORD 24499
17-03-18 06:57:30.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:30.974 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.231 V. Piezo Error = -10.0 V.
17-03-18 06:57:30.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29049 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29050 (-126.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29044 (-126.1 uncal um), Max = 29053 (-126.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 06:57:30.974 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29049, posNoise = 4, negNoise = 5
17-03-18 06:57:30.974 -07 000000610 INF: Z Motor: After move to -0.126931, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:30.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:57:30.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:57:30.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:57:30.974 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:57:30.974 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:57:30.974 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:57:30.974 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:57:30.974 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:57:30.974 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:57:30.974 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:57:30.974 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:57:30.974 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:57:30.974 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:57:30.974 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:57:30.974 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:57:30.974 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 06:57:30.974 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:57:30.984 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 06:57:30.984 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 06:57:30.984 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 06:57:30.984 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 06:57:30.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 27905 150\n [Camera]
17-03-18 06:57:31.194 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:57:31.664 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:57:31.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:57:31.664 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:57:31.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:57:31.664 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:31.664 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:31.814 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:31.814 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:57:31.814 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:31.814 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 06:57:31.854 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27905 855
17-03-18 06:57:31.904 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:57:31.904 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 154. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:57:32.004 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:57:32.194 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 06:57:32.194 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:57:32.194 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:32.194 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 06:57:32.194 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 06:57:32.194 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:32.204 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:57:32.204 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 535 ms.
17-03-18 06:57:32.204 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:32.204 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 541 ms.
17-03-18 06:57:32.234 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:57:32.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:57:32.234 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:32.234 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:32.234 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 06:57:32.234 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:57:32.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:57:32.234 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:32.244 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:32.244 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 06:57:32.424 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-18 06:57:32.424 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:57:32.424 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 27905 150' command took 2 ms to send, 1422 ms to get response, and 1431 ms overall
17-03-18 06:57:32.424 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.127308
17-03-18 06:57:32.424 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12731 mm
17-03-18 06:57:32.424 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:57:32.424 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 06:57:32.424 -07 000000480 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 06:57:32.424 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:32.424 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 27810, sync = True, waitForSettling = False)
17-03-18 06:57:32.424 -07 000000447 INF: Z Motor: Moving to -0.127306 mm, started at -0.126940 mm, distance = -0.37 um
17-03-18 06:57:32.434 -07 000000606 INF: FPGA: Recv YRDPOS 151567
17-03-18 06:57:32.434 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:57:32.434 -07 000000447 INF: FPGA: Xmit ZDACW 27810\n [Z Motor]
17-03-18 06:57:32.434 -07 000000480 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:32.434 -07 000000480 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:57:32.434 -07 000000480 INF: Y Motor: Moving 1352 steps-31
17-03-18 06:57:32.434 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 06:57:32.444 -07 000000447 INF: FPGA: 'ZDACW 27810' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 06:57:32.444 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:32.444 -07 000000461 INF: FPGA: Recv ZDACR 27810
17-03-18 06:57:32.454 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:57:32.454 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:32.454 -07 000000447 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 06:57:32.614 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 06:57:32.614 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 06:57:32.614 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:32.614 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 06:57:32.614 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 06:57:32.614 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:32.614 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:32.614 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 06:57:32.614 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:32.624 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 06:57:32.824 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 06:57:32.824 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 06:57:32.864 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:32.864 -07 000000585 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:57:32.874 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:57:32.874 -07 000000480 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:32.874 -07 000000480 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 06:57:32.874 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-18 06:57:33.824 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:33.824 -07 000000012 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:57:33.834 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:33.834 -07 000000480 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:33.854 -07 000000480 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:57:33.854 -07 000000480 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:57:33.854 -07 000000480 INF: Y Motor: Moved to 74.8311 after 1423 ms (table move)
17-03-18 06:57:33.854 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.127306 mm (DAC = 27810)
17-03-18 06:57:33.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:33.854 -07 000000430 INF: FPGA: Recv ZSGSRD 29110
17-03-18 06:57:33.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:57:33.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:33.864 -07 000000012 INF: FPGA: Recv ZSGSRD 29106
17-03-18 06:57:33.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:33.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:33.874 -07 000000585 INF: FPGA: Recv ZSGSRD 29104
17-03-18 06:57:33.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:33.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:33.884 -07 000000437 INF: FPGA: Recv ZSGSRD 29110
17-03-18 06:57:33.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:33.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:33.894 -07 000000626 INF: FPGA: Recv ZSGSRD 29099
17-03-18 06:57:33.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:33.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:33.904 -07 000000430 INF: FPGA: Recv ZSGSRD 29102
17-03-18 06:57:33.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:33.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:33.914 -07 000000606 INF: FPGA: Recv ZSGSRD 29114
17-03-18 06:57:33.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:33.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:33.924 -07 000000461 INF: FPGA: Recv ZSGSRD 29106
17-03-18 06:57:33.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:33.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:33.934 -07 000000626 INF: FPGA: Recv ZSGSRD 29106
17-03-18 06:57:33.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:33.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:33.944 -07 000000012 INF: FPGA: Recv ZSGSRD 29110
17-03-18 06:57:33.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:33.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:33.954 -07 000000479 INF: FPGA: Recv ZPIEZORD 24595
17-03-18 06:57:33.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:33.964 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.244 V. Piezo Error = -9.9 V.
17-03-18 06:57:33.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29107 (-126.5 uncal um), Error = 0.8 uncal um, Median = 29106 (-126.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29099 (-126.5 uncal um), Max = 29114 (-126.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:57:33.964 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29107, posNoise = 7, negNoise = 8
17-03-18 06:57:33.964 -07 000000610 INF: Z Motor: After move to -0.127306, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:33.964 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 108 ms (allowed 150 ms), total time = 1533 ms
17-03-18 06:57:33.964 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 06:57:34.014 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-18 06:57:34.014 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:57:34.014 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.127312894821371. ----------
17-03-18 06:57:34.014 -07 000000610 INF: Cycle	155	Tile	19	Exposure Settings		A	470	G	226	T	226	C	470
17-03-18 06:57:34.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27634, sync = True, waitForSettling = True)
17-03-18 06:57:34.014 -07 000000610 INF: Z Motor: Moving to -0.126500 mm, started at -0.127313 mm, distance = 0.81 um
17-03-18 06:57:34.014 -07 000000610 INF: FPGA: Xmit ZDACW 27634\n [Z Motor]
17-03-18 06:57:34.014 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 06:57:34.024 -07 000000610 INF: FPGA: 'ZDACW 27634' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:57:34.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:57:34.024 -07 000000444 INF: FPGA: Recv ZDACR 27634
17-03-18 06:57:34.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:34.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:57:34.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:34.194 -07 000000437 INF: FPGA: Recv ZSGSRD 28978
17-03-18 06:57:34.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 06:57:34.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:34.204 -07 000000606 INF: FPGA: Recv ZSGSRD 28981
17-03-18 06:57:34.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:34.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:34.214 -07 000000455 INF: FPGA: Recv ZSGSRD 28977
17-03-18 06:57:34.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:34.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:34.224 -07 000000591 INF: FPGA: Recv ZSGSRD 28983
17-03-18 06:57:34.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:34.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:34.234 -07 000000437 INF: FPGA: Recv ZSGSRD 28981
17-03-18 06:57:34.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:34.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:34.244 -07 000000606 INF: FPGA: Recv ZSGSRD 28987
17-03-18 06:57:34.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:34.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:34.254 -07 000000455 INF: FPGA: Recv ZSGSRD 28981
17-03-18 06:57:34.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:34.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:34.264 -07 000000576 INF: FPGA: Recv ZSGSRD 28973
17-03-18 06:57:34.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:34.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:34.274 -07 000000437 INF: FPGA: Recv ZSGSRD 28984
17-03-18 06:57:34.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:34.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:57:34.284 -07 000000430 INF: FPGA: Recv ZSGSRD 28982
17-03-18 06:57:34.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:34.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:57:34.294 -07 000000626 INF: FPGA: Recv ZPIEZORD 24430
17-03-18 06:57:34.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:34.304 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.217 V. Piezo Error = -10.0 V.
17-03-18 06:57:34.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28981 (-125.7 uncal um), Error = 0.8 uncal um, Median = 28981 (-125.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 28973 (-125.7 uncal um), Max = 28987 (-125.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 06:57:34.304 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28981, posNoise = 6, negNoise = 8
17-03-18 06:57:34.304 -07 000000610 INF: Z Motor: After move to -0.126500, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:57:34.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-18 06:57:34.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:57:34.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:57:34.304 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:57:34.304 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:57:34.304 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:57:34.304 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:57:34.304 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:57:34.304 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:57:34.304 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:57:34.304 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:57:34.304 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:57:34.304 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:57:34.314 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:57:34.314 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:57:34.314 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:57:34.314 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:57:34.324 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 06:57:34.324 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:57:34.324 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:57:34.324 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 06:57:34.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 27810 150\n [Camera]
17-03-18 06:57:34.504 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.011254,
17-03-18 06:57:34.534 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:57:35.004 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-18 06:57:35.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-18 06:57:35.004 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:35.004 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-18 06:57:35.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-18 06:57:35.004 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:35.004 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:35.014 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 06:57:35.014 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:35.014 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:57:35.194 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27810 855
17-03-18 06:57:35.344 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-18 06:57:35.384 -07 000000479 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 06:57:35.384 -07 000000479 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 06:57:35.384 -07 000000479 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:35.384 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 06:57:35.384 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 06:57:35.384 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:35.394 -07 000000479 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:35.394 -07 000000479 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 06:57:35.394 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:57:35.394 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 06:57:35.574 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-18 06:57:35.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-18 06:57:35.574 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:57:35.574 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-18 06:57:35.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-18 06:57:35.574 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:57:35.684 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:57:35.684 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 06:57:35.694 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:57:35.694 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 06:57:35.764 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-18 06:57:35.764 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:57:35.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 27810 150' command took 2 ms to send, 1422 ms to get response, and 1432 ms overall
17-03-18 06:57:36.074 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 06:57:36.074 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 06:57:36.074 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:36.074 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 06:57:36.074 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 06:57:36.074 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:57:36.074 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:57:36.074 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 06:57:36.074 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-18 06:57:36.074 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 06:57:36.084 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-18 06:57:36.114 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-18 06:57:36.114 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 06:57:36.164 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 06:57:36.174 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 06:57:36.174 -07 000000610 INF: Imaging Cycle 155: ScanTilesCommand Cycle 155 time end. Duration was 151346 ms.
17-03-18 06:57:36.174 -07 000000610 INF: =================== Cycle #155 ===================
17-03-18 06:57:36.174 -07 000000610 INF: ===================  ===================
17-03-18 06:57:36.174 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:57:36.184 -07 000000461 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 06:57:36.184 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:57:36.184 -07 000000576 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 06:57:36.184 -07 000000576 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 155, FrontChillerTemperature: 4.011254, FrontChillerHeatSinkTemperature: 0.432222, AmbientTemperature: 18.74474, FlowCellCompartmentTemperature: 21.99836, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.60099, GreenLEDSensorTemperature: 25.23361, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 06:57:36.304 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.