17-03-18 06:57:36.354 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:57:36.354 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 06:57:36.354 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 06:57:36.354 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:36.364 -07 000000606 INF: FPGA: Recv YRDPOS 153254
17-03-18 06:57:36.364 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 06:57:36.364 -07 000000610 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:36.364 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 06:57:36.364 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 06:57:36.364 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 06:57:36.474 -07 000000585 INF: FPGA: Recv YMVTO 154378 873
17-03-18 06:57:36.474 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-18 06:57:36.474 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 06:57:36.474 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 879 steps, but required 873 steps (0.546 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 06:57:36.474 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.550 mm, average velocity = 4.737 mm/sec
17-03-18 06:57:36.904 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:57:36.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:57:39.474 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:57:39.474 -07 000000480 INF: FPGA: Recv YRDPOS 154379
17-03-18 06:57:39.484 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:39.484 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:57:39.514 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:57:39.514 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 06:57:39.514 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3157 ms
17-03-18 06:57:39.524 -07 000000610 INF: =================== Cycle #156, Flow Cell Temp 60° ===================
17-03-18 06:57:39.524 -07 000000610 INF: =================== Cycle #156, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 06:57:39.524 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 06:57:39.524 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:57:39.534 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:57:39.534 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:57:39.534 -07 000000430 INF: FPGA: Recv TEC2EN 
17-03-18 06:57:39.544 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:57:39.544 -07 000000610 INF: =================== Cycle #156, Flow Cell Temp 60° ===================
17-03-18 06:57:39.544 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:57:39.544 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:57:39.544 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:57:39.574 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:57:39.574 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 06:57:39.574 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:57:39.874 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:57:39.874 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.974486,
17-03-18 06:57:39.894 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:57:39.894 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:57:39.944 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:57:39.964 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:57:39.964 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:57:40.064 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:57:40.064 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:57:40.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:57:40.164 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:57:40.164 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:57:40.164 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:57:40.294 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:57:40.334 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:57:41.904 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:57:41.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2031, R2=2115, Total=4146. Warn if over 250 bubbles per interval.
17-03-18 06:57:43.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:57:43.494 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:57:43.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:57:43.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:57:44.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:57:44.394 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:57:44.394 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:57:44.394 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:57:44.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:57:44.554 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:57:44.554 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:57:44.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:57:44.714 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:57:44.714 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:57:44.714 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:57:44.844 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:57:44.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:57:45.254 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.99219,
17-03-18 06:57:45.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:57:45.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:57:45.334 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:57:45.334 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:57:46.554 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:57:46.554 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 06:57:46.554 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:57:46.574 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:57:46.574 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 06:57:46.574 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 06:57:46.704 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:57:46.724 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 06:57:46.724 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 06:57:46.774 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:57:46.794 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:57:46.794 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:57:46.894 -07 000000610 INF: =================== Cycle #156, Pumping Reagent CMS (4) ===================
17-03-18 06:57:46.894 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:57:46.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:57:46.904 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 06:57:46.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2033, R2=2117, Total=4150. Warn if over 250 bubbles per interval.
17-03-18 06:57:46.924 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:57:46.924 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:57:46.924 -07 000000610 INF: =================== Cycle #156, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 06:57:47.054 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:57:47.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:57:48.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:57:48.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:57:48.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:57:49.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:57:49.014 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:57:49.014 -07 000000610 INF: =================== Cycle #156, Pumping Reagent CMS (4) ===================
17-03-18 06:57:49.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:57:49.174 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:57:49.174 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:57:49.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:57:49.334 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:57:49.334 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:57:49.334 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:57:49.464 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:57:49.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:57:49.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:57:49.954 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:57:49.954 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:57:49.954 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:57:50.614 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.02213,
17-03-18 06:57:51.174 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:57:51.174 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:57:51.174 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:57:51.194 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 06:57:51.194 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 06:57:51.194 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 06:57:51.344 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:57:51.364 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 06:57:51.364 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 06:57:51.414 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:57:51.434 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:57:51.434 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:57:51.534 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:57:51.534 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:57:51.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:57:51.564 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:57:51.564 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:57:51.564 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:57:51.694 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:57:51.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:57:51.914 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 06:57:51.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2034, R2=2117, Total=4151. Warn if over 250 bubbles per interval.
17-03-18 06:57:52.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:57:52.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:57:52.634 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:57:52.634 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:57:52.764 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:57:52.794 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:57:52.794 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:57:52.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:57:52.954 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:57:52.954 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:57:52.954 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:57:53.084 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:57:53.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:57:53.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:57:53.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:57:53.574 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 06:57:53.574 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:57:53.574 -07 000000437 INF: WaitCommand(10000) start
17-03-18 06:57:53.574 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:57:53.574 -07 000000576 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:57:54.794 -07 000000576 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:57:54.794 -07 000000576 INF: LanePump: Xmit /1?\r
17-03-18 06:57:54.824 -07 000000576 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:57:54.824 -07 000000576 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:57:54.954 -07 000000576 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:57:54.994 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:57:55.984 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.004458,
17-03-18 06:57:56.524 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-18 06:57:56.554 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:57:56.914 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-18 06:57:56.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2037, R2=2119, Total=4156. Warn if over 250 bubbles per interval.
17-03-18 06:57:56.974 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-18 06:57:57.004 -07 000000576 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:57:57.004 -07 000000576 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:57:57.004 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:57:57.004 -07 000000576 INF: ===================  ===================
17-03-18 06:58:01.354 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.011254,
17-03-18 06:58:01.914 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-18 06:58:01.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2037, R2=2121, Total=4158. Warn if over 250 bubbles per interval.
17-03-18 06:58:03.584 -07 000000437 INF: WaitCommand(10000) end
17-03-18 06:58:03.584 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:58:03.584 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 06:58:03.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:58:03.624 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:58:03.624 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:58:03.624 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:58:03.754 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 06:58:03.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:58:06.724 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.012614,
17-03-18 06:58:06.914 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:58:06.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2037, R2=2122, Total=4159. Warn if over 250 bubbles per interval.
17-03-18 06:58:09.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:09.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:58:10.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:10.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:58:10.824 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:10.854 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:58:11.274 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:11.304 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:58:11.724 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:11.754 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:58:11.754 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 06:58:11.754 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:58:11.884 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:58:11.914 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:58:11.914 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:58:11.914 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-18 06:58:11.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2122, Total=4161. Warn if over 250 bubbles per interval.
17-03-18 06:58:12.044 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:58:12.074 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:58:12.074 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:58:12.074 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:58:12.094 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.989471,
17-03-18 06:58:12.204 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:58:12.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:58:12.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:12.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:58:12.694 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:58:12.694 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:58:13.914 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:58:13.914 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 06:58:13.914 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:58:13.934 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:58:13.934 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 06:58:13.934 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 06:58:14.144 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:58:14.164 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 06:58:14.164 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 06:58:14.214 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:58:14.234 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:58:14.234 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:58:14.334 -07 000000610 INF: =================== Cycle #156, Pumping Reagent IMT (1) ===================
17-03-18 06:58:14.334 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:58:14.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:58:14.374 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 06:58:14.374 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 06:58:14.374 -07 000000610 INF: =================== Cycle #156, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 06:58:14.504 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:58:14.544 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:58:15.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:16.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:58:16.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:16.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:58:16.464 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:58:16.464 -07 000000610 INF: =================== Cycle #156, Pumping Reagent IMT (1) ===================
17-03-18 06:58:16.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:58:16.624 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:58:16.624 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:58:16.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:58:16.784 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:58:16.784 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:58:16.784 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:58:16.914 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:58:16.914 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-18 06:58:16.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:58:16.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:58:17.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:17.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:58:17.404 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:58:17.404 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:58:17.464 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.983999,
17-03-18 06:58:18.624 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:58:18.624 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:58:18.624 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:58:18.644 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 06:58:18.644 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 06:58:18.644 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:58:18.874 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:58:18.894 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 06:58:18.894 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 06:58:18.944 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:58:18.964 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:58:18.964 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:58:19.064 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:58:19.064 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:58:19.064 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:58:19.094 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 06:58:19.094 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 06:58:19.094 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:58:19.224 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:58:19.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:58:20.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:20.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:58:20.164 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:58:20.164 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:58:20.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:58:20.324 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:58:20.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:58:20.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:58:20.484 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:58:20.484 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:58:20.484 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:58:20.614 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:58:20.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:58:21.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:21.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:58:21.104 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:58:21.104 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:58:21.104 -07 000000610 INF: =================== Cycle #156, Flow Cell Temp 65° ===================
17-03-18 06:58:21.104 -07 000000610 INF: =================== Cycle #156, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 06:58:21.104 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 06:58:21.114 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:58:21.114 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:58:21.114 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:58:21.114 -07 000000437 INF: FPGA: Recv TEC2EN 
17-03-18 06:58:21.124 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:58:21.124 -07 000000610 INF: =================== Cycle #156, Flow Cell Temp 65° ===================
17-03-18 06:58:21.124 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:58:21.124 -07 000000610 INF: WaitCommand(30000) start
17-03-18 06:58:21.914 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:58:21.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:58:22.834 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.99219,
17-03-18 06:58:26.914 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:58:26.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:58:28.204 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.994908,
17-03-18 06:58:31.914 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:58:31.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:58:33.574 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.996267,
17-03-18 06:58:36.914 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:58:36.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:58:38.944 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.999021,
17-03-18 06:58:41.914 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:58:41.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:58:44.314 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.014009,
17-03-18 06:58:46.914 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:58:46.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:58:49.684 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.001704,
17-03-18 06:58:51.134 -07 000000610 INF: WaitCommand(30000) end
17-03-18 06:58:51.134 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:58:51.134 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 06:58:51.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:58:51.264 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 06:58:51.264 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 06:58:51.264 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:58:51.394 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 06:58:51.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:58:51.914 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:58:51.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:58:51.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:52.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:58:52.004 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-18 06:58:52.004 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:58:52.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:58:52.164 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:58:52.164 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:58:52.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:58:52.324 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:58:52.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:58:52.324 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:58:52.454 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:58:52.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:58:52.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:52.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:58:52.944 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:58:52.944 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:58:52.944 -07 000000606 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:58:52.944 -07 000000480 INF: WaitCommand(30000) start
17-03-18 06:58:52.944 -07 000000606 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:58:54.164 -07 000000606 INF: AsyncDelayTimer waited 1215ms
17-03-18 06:58:54.164 -07 000000606 INF: LanePump: Xmit /1?\r
17-03-18 06:58:54.194 -07 000000606 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 06:58:54.194 -07 000000606 INF: LanePump: Current Position of Pump is: 1920
17-03-18 06:58:54.324 -07 000000606 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:58:54.364 -07 000000606 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:58:55.054 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.996267,
17-03-18 06:58:56.704 -07 000000606 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:56.734 -07 000000606 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:58:56.914 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:58:56.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:58:57.154 -07 000000606 INF: LanePump: Xmit /1Q\r
17-03-18 06:58:57.184 -07 000000606 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:58:57.184 -07 000000606 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 06:58:57.184 -07 000000606 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:58:57.184 -07 000000606 INF: ===================  ===================
17-03-18 06:59:00.424 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.975845,
17-03-18 06:59:01.914 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:59:01.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:59:05.794 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.985358,
17-03-18 06:59:06.914 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:59:06.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:59:11.174 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.988112,
17-03-18 06:59:11.914 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:59:11.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:59:16.534 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.020806,
17-03-18 06:59:16.914 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:59:16.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:59:21.904 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.011254,
17-03-18 06:59:21.914 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:59:21.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2039, R2=2124, Total=4163. Warn if over 250 bubbles per interval.
17-03-18 06:59:22.954 -07 000000480 INF: WaitCommand(30000) end
17-03-18 06:59:22.954 -07 000000610 INF: =================== Cycle #156, Flow Cell Temp 22° ===================
17-03-18 06:59:22.954 -07 000000610 INF: =================== Cycle #156, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 06:59:22.954 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 06:59:22.964 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-18 06:59:22.964 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 06:59:22.964 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 06:59:22.964 -07 000000576 INF: FPGA: Recv TEC2EN 
17-03-18 06:59:22.974 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:59:22.974 -07 000000610 INF: =================== Cycle #156, Flow Cell Temp 22° ===================
17-03-18 06:59:22.974 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:59:22.974 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:59:22.974 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 06:59:22.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:59:23.004 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 06:59:23.004 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 06:59:23.004 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:59:23.134 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 06:59:23.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:59:26.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:59:26.334 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:59:26.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:59:26.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:59:26.914 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 6
17-03-18 06:59:26.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=6, R2=6, Total=12. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2045, R2=2130, Total=4175. Warn if over 250 bubbles per interval.
17-03-18 06:59:27.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:59:27.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:59:27.234 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 06:59:27.234 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:59:27.274 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.014009,
17-03-18 06:59:27.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:59:27.394 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:59:27.394 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:59:27.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:59:27.554 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:59:27.554 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:59:27.554 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:59:27.684 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:59:27.714 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:59:28.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:59:28.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:59:28.174 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:59:28.174 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:59:29.394 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:59:29.394 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 06:59:29.394 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:59:29.414 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:59:29.414 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 06:59:29.414 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 06:59:29.564 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:59:29.584 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:59:29.584 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:59:29.634 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:59:29.654 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:59:29.654 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:59:29.754 -07 000000610 INF: =================== Cycle #156, Pumping Reagent USM (2) ===================
17-03-18 06:59:29.754 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 06:59:29.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:59:29.784 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 06:59:29.784 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 06:59:29.784 -07 000000610 INF: =================== Cycle #156, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 06:59:29.914 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 06:59:29.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:59:31.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:59:31.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:59:31.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:59:31.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:59:31.874 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 06:59:31.874 -07 000000610 INF: =================== Cycle #156, Pumping Reagent USM (2) ===================
17-03-18 06:59:31.914 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 06:59:31.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2046, R2=2130, Total=4176. Warn if over 250 bubbles per interval.
17-03-18 06:59:32.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:59:32.034 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:59:32.034 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:59:32.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:59:32.194 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:59:32.194 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:59:32.194 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:59:32.324 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:59:32.354 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:59:32.644 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.999021,
17-03-18 06:59:32.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:59:32.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:59:32.814 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:59:32.814 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:59:34.034 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 06:59:34.034 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 06:59:34.034 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:59:34.054 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 06:59:34.054 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 06:59:34.054 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 06:59:34.204 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:59:34.224 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 06:59:34.224 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 06:59:34.274 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:59:34.294 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:59:34.294 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 06:59:34.394 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:59:34.394 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 06:59:34.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:59:34.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 06:59:34.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 06:59:34.424 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 06:59:34.554 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 06:59:34.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:59:35.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:59:35.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:59:35.494 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 06:59:35.494 -07 000000610 INF: =================== Cycle #156, Pumping Reagent PR2 (3) ===================
17-03-18 06:59:35.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:59:35.654 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:59:35.654 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:59:35.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 06:59:35.814 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:59:35.814 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:59:35.814 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 06:59:35.944 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 06:59:35.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:59:36.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 06:59:36.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:59:36.434 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 06:59:36.434 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 06:59:36.434 -07 000000461 INF: WaitCommand(10000) start
17-03-18 06:59:36.434 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:59:36.434 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 06:59:36.914 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-18 06:59:36.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2131, Total=4179. Warn if over 250 bubbles per interval.
17-03-18 06:59:37.654 -07 000000480 INF: AsyncDelayTimer waited 1216ms
17-03-18 06:59:37.654 -07 000000480 INF: LanePump: Xmit /1?\r
17-03-18 06:59:37.684 -07 000000480 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 06:59:37.684 -07 000000480 INF: LanePump: Current Position of Pump is: 1110
17-03-18 06:59:37.814 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 06:59:37.854 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:59:38.014 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.011254,
17-03-18 06:59:39.384 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-18 06:59:39.414 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 06:59:39.834 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-18 06:59:39.864 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 06:59:39.864 -07 000000480 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 06:59:39.864 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 06:59:39.864 -07 000000480 INF: ===================  ===================
17-03-18 06:59:41.914 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:59:41.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2131, Total=4179. Warn if over 250 bubbles per interval.
17-03-18 06:59:43.384 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.990831,
17-03-18 06:59:46.444 -07 000000461 INF: WaitCommand(10000) end
17-03-18 06:59:46.444 -07 000000610 INF: =================== Cycle #156, Imaging ===================
17-03-18 06:59:46.444 -07 000000610 INF: Imaging Cycle 156: ScanTilesCommand Cycle 156 time start.
17-03-18 06:59:46.444 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 06:59:46.444 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:59:46.474 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 06:59:46.474 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 06:59:46.474 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 06:59:46.774 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 06:59:46.794 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 06:59:46.794 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 06:59:46.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 06:59:46.864 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 06:59:46.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:59:46.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:59:46.864 -07 000000461 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 06:59:46.864 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:59:46.864 -07 000000461 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 06:59:46.864 -07 000000501 INF: FPGA: Recv EXLED1ON 
17-03-18 06:59:46.874 -07 000000461 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:59:46.874 -07 000000461 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 06:59:46.874 -07 000000501 INF: FPGA: Recv EXLED1ADCR 23229
17-03-18 06:59:46.884 -07 000000461 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:46.884 -07 000000461 INF: RedLED: Using Red data: Photodiode ADC 23229 --> 7.5 mW (old method), or 205.9 mW (new method). Difference = 198.4 mW
17-03-18 06:59:46.884 -07 000000461 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 06:59:46.884 -07 000000611 INF: FPGA: Recv EXLED1OFF 
17-03-18 06:59:46.894 -07 000000461 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:46.894 -07 000000461 INF: RedLED: LED was on for 20 ms
17-03-18 06:59:46.894 -07 000000461 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 06:59:46.894 -07 000000461 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 06:59:46.894 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:59:46.894 -07 000000461 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 06:59:46.894 -07 000000501 INF: FPGA: Recv EXLED2ON 
17-03-18 06:59:46.904 -07 000000461 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:59:46.904 -07 000000461 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 06:59:46.904 -07 000000501 INF: FPGA: Recv EXLED1ADCR 2102
17-03-18 06:59:46.914 -07 000000461 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:46.914 -07 000000461 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-18 06:59:46.914 -07 000000461 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 06:59:46.914 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:59:46.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2132, Total=4180. Warn if over 250 bubbles per interval.
17-03-18 06:59:46.914 -07 000000611 INF: FPGA: Recv EXLED2OFF 
17-03-18 06:59:46.924 -07 000000461 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:46.924 -07 000000461 INF: GreenLED: LED was on for 19 ms
17-03-18 06:59:46.924 -07 000000461 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 06:59:46.924 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 06:59:46.924 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-18 06:59:46.934 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 06:59:46.934 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 06:59:47.434 -07 000000501 INF: FPGA: Recv EMOUT
17-03-18 06:59:47.434 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 503 ms overall
17-03-18 06:59:47.434 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 06:59:47.434 -07 000000461 INF: FPGA: Recv EMCUR 
17-03-18 06:59:47.444 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 06:59:47.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:59:47.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.126503444091509. ------
17-03-18 06:59:47.444 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:59:47.444 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17842 mm
17-03-18 06:59:47.444 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:59:47.454 -07 000000585 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:59:47.454 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38976, sync = True, waitForSettling = False)
17-03-18 06:59:47.454 -07 000000501 INF: Z Motor: Moving to -0.178421 mm, started at -0.126503 mm, distance = -51.92 um
17-03-18 06:59:47.454 -07 000000501 INF: FPGA: Xmit ZDACW 38976\n [Z Motor]
17-03-18 06:59:47.454 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 06:59:47.454 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 06:59:47.454 -07 000000480 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-18 06:59:47.454 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:59:47.464 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:59:47.464 -07 000000501 INF: FPGA: 'ZDACW 38976' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:47.464 -07 000000585 INF: FPGA: Recv YRDPOS 154379
17-03-18 06:59:47.474 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 06:59:47.474 -07 000000611 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:59:47.474 -07 000000480 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:59:47.474 -07 000000480 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 06:59:47.474 -07 000000480 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 06:59:47.484 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:59:47.484 -07 000000585 INF: FPGA: Recv ZDACR 38976
17-03-18 06:59:47.494 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:59:47.494 -07 000000480 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 06:59:47.494 -07 000000501 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 06:59:47.674 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:59:47.674 -07 000000611 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 06:59:48.754 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.990831,
17-03-18 06:59:49.174 -07 000000606 INF: FPGA: Recv YMVTO 122701 24778
17-03-18 06:59:49.174 -07 000000480 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-18 06:59:49.174 -07 000000480 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 06:59:49.174 -07 000000480 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24778 steps (15.486 mm). Slippage = 0.019 mm (0.00%).
17-03-18 06:59:49.174 -07 000000480 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.468 mm, average velocity = 9.067 mm/sec
17-03-18 06:59:51.914 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 06:59:51.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 06:59:52.024 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:59:52.024 -07 000000576 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:59:52.034 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:52.034 -07 000000480 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:59:52.064 -07 000000480 INF: Y Motor: After move to 59.912609, error = -0.003429, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:59:52.064 -07 000000480 INF: Y Motor: Position error after settling = -7 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 06:59:52.064 -07 000000480 INF: Y Motor: Moved to 59.9092 after 4612 ms
17-03-18 06:59:52.064 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178421 mm (DAC = 38976)
17-03-18 06:59:52.064 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:52.074 -07 000000576 INF: FPGA: Recv ZSGSRD 37068
17-03-18 06:59:52.074 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 06:59:52.074 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:52.074 -07 000000012 INF: FPGA: Recv ZSGSRD 37067
17-03-18 06:59:52.084 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:59:52.084 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:52.084 -07 000000606 INF: FPGA: Recv ZSGSRD 37064
17-03-18 06:59:52.094 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:52.094 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:52.094 -07 000000012 INF: FPGA: Recv ZSGSRD 37063
17-03-18 06:59:52.104 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:52.104 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:52.104 -07 000000437 INF: FPGA: Recv ZSGSRD 37062
17-03-18 06:59:52.114 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:52.114 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:52.114 -07 000000501 INF: FPGA: Recv ZSGSRD 37064
17-03-18 06:59:52.124 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:52.124 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:52.124 -07 000000606 INF: FPGA: Recv ZSGSRD 37064
17-03-18 06:59:52.134 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:52.134 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:52.134 -07 000000585 INF: FPGA: Recv ZSGSRD 37066
17-03-18 06:59:52.144 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:52.144 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:52.144 -07 000000480 INF: FPGA: Recv ZSGSRD 37066
17-03-18 06:59:52.154 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:52.154 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:52.154 -07 000000437 INF: FPGA: Recv ZSGSRD 37065
17-03-18 06:59:52.164 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:52.164 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:59:52.164 -07 000000606 INF: FPGA: Recv ZPIEZORD 33320
17-03-18 06:59:52.174 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:52.174 -07 000000461 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -8.3 V.
17-03-18 06:59:52.174 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37065 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37064 (-177.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 37062 (-177.5 uncal um), Max = 37068 (-177.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:59:52.174 -07 000000461 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37065, posNoise = 3, negNoise = 3
17-03-18 06:59:52.174 -07 000000461 INF: Z Motor: After move to -0.178421, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:59:52.174 -07 000000461 INF: Z Motor: Settle wait time = 4618 ms, measure time = 102 ms (allowed 150 ms), total time = 4720 ms
17-03-18 06:59:52.174 -07 000000461 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:59:52.224 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4772 ms
17-03-18 06:59:52.224 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:59:52.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:59:52.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:59:52.224 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:59:52.224 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:59:52.224 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 06:59:52.224 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:59:52.224 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:59:52.224 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 06:59:52.254 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-18 06:59:52.254 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 06:59:52.254 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 06:59:52.254 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 06:59:52.274 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 06:59:52.274 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 06:59:52.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 06:59:52.314 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 06:59:52.614 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 06:59:52.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 06:59:52.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 06:59:52.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611189720, 0x0, 559484976) start.
17-03-18 06:59:52.654 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 06:59:52.654 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 06:59:52.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 06:59:52.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611189720, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 06:59:52.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:59:52.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 06:59:52.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 06:59:52.854 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:59:53.464 -07 000000576 INF: Image SNR check: start
17-03-18 06:59:53.474 -07 000000576 INF: Image SNR check: pass  [peak (Max-Min)=123.36]
17-03-18 06:59:53.474 -07 000000576 INF: Autofocus start
17-03-18 06:59:53.474 -07 000000576 INF: MeasureProfile start
17-03-18 06:59:53.484 -07 000000576 INF: MeasureProfile done
17-03-18 06:59:53.484 -07 000000576 INF: X=32  Z correction [um]=0.09220707
17-03-18 06:59:53.484 -07 000000576 INF: Autofocus finished
17-03-18 06:59:53.484 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:59:53.484 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 627 ms to get response, and 632 ms overall
17-03-18 06:59:53.484 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 06:59:53.694 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 06:59:53.694 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-18 06:59:53.694 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9091796875, Z-position -0.178436775045505. ----------
17-03-18 06:59:53.694 -07 000000610 INF: Cycle	156	Tile	1	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 06:59:53.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37509, sync = True, waitForSettling = True)
17-03-18 06:59:53.704 -07 000000610 INF: Z Motor: Moving to -0.171705 mm, started at -0.178437 mm, distance = 6.73 um
17-03-18 06:59:53.704 -07 000000610 INF: FPGA: Xmit ZDACW 37509\n [Z Motor]
17-03-18 06:59:53.704 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 06:59:53.714 -07 000000610 INF: FPGA: 'ZDACW 37509' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:53.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:59:53.714 -07 000000576 INF: FPGA: Recv ZDACR 37509
17-03-18 06:59:53.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:53.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:59:53.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:53.874 -07 000000437 INF: FPGA: Recv ZSGSRD 36014
17-03-18 06:59:53.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:59:53.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:53.884 -07 000000576 INF: FPGA: Recv ZSGSRD 36018
17-03-18 06:59:53.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:53.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:53.894 -07 000000437 INF: FPGA: Recv ZSGSRD 36015
17-03-18 06:59:53.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:53.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:53.904 -07 000000437 INF: FPGA: Recv ZSGSRD 36017
17-03-18 06:59:53.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:53.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:53.914 -07 000000576 INF: FPGA: Recv ZSGSRD 36019
17-03-18 06:59:53.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:53.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:53.924 -07 000000576 INF: FPGA: Recv ZSGSRD 36014
17-03-18 06:59:53.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:53.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:53.934 -07 000000437 INF: FPGA: Recv ZSGSRD 36015
17-03-18 06:59:53.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:53.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:53.944 -07 000000437 INF: FPGA: Recv ZSGSRD 36022
17-03-18 06:59:53.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:53.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:53.954 -07 000000437 INF: FPGA: Recv ZSGSRD 36014
17-03-18 06:59:53.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:53.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:53.964 -07 000000576 INF: FPGA: Recv ZSGSRD 36023
17-03-18 06:59:53.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:53.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:59:53.974 -07 000000437 INF: FPGA: Recv ZPIEZORD 31911
17-03-18 06:59:53.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:53.984 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -9.1 V.
17-03-18 06:59:53.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36017 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36016 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36014 (-170.8 uncal um), Max = 36023 (-170.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 06:59:53.984 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36017, posNoise = 6, negNoise = 3
17-03-18 06:59:53.984 -07 000000610 INF: Z Motor: After move to -0.171705, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:59:53.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-18 06:59:53.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:59:53.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:59:53.984 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:59:53.984 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:59:53.984 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:59:53.984 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:59:53.984 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:59:53.984 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:59:53.984 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 06:59:53.984 -07 000000437 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 06:59:53.984 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:59:53.984 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:59:53.994 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 06:59:53.994 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:59:54.004 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:59:54.004 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 06:59:54.014 -07 000000437 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 06:59:54.014 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:59:54.014 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 06:59:54.014 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:59:54.034 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 06:59:54.034 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 43 ms.
17-03-18 06:59:54.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37685 150\n [Camera]
17-03-18 06:59:54.124 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.981281,
17-03-18 06:59:54.234 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 06:59:54.704 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 06:59:54.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 06:59:54.704 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:59:54.714 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 06:59:54.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 06:59:54.714 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:59:54.714 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:59:54.714 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:59:54.724 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:59:54.724 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:59:54.904 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37685 857
17-03-18 06:59:55.054 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 06:59:55.104 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 06:59:55.104 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 06:59:55.104 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:59:55.104 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:59:55.104 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 06:59:55.104 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 06:59:55.104 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:59:55.114 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:59:55.114 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:59:55.114 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:59:55.274 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 06:59:55.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 06:59:55.274 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:59:55.284 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 06:59:55.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 06:59:55.284 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:59:55.414 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:59:55.414 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 06:59:55.414 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:59:55.414 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 06:59:55.474 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 06:59:55.474 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:59:55.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37685 150' command took 2 ms to send, 1430 ms to get response, and 1436 ms overall
17-03-18 06:59:55.474 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.171924
17-03-18 06:59:55.474 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17192 mm
17-03-18 06:59:55.474 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:59:55.474 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 06:59:55.474 -07 000000480 INF: Y Motor: Moving to 60.7426 mm, started at 59.9092 mm, delta = 0.8334 mm
17-03-18 06:59:55.474 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:59:55.474 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37557, sync = True, waitForSettling = False)
17-03-18 06:59:55.474 -07 000000576 INF: Z Motor: Moving to -0.171925 mm, started at -0.171704 mm, distance = -0.22 um
17-03-18 06:59:55.474 -07 000000611 INF: FPGA: Recv YRDPOS 122694
17-03-18 06:59:55.484 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:59:55.484 -07 000000480 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:59:55.484 -07 000000480 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:59:55.484 -07 000000480 INF: Y Motor: Moving 1333 steps0
17-03-18 06:59:55.484 -07 000000576 INF: FPGA: Xmit ZDACW 37557\n [Z Motor]
17-03-18 06:59:55.484 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 06:59:55.494 -07 000000576 INF: FPGA: 'ZDACW 37557' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 06:59:55.494 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:59:55.504 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:59:55.504 -07 000000606 INF: FPGA: Recv ZDACR 37557
17-03-18 06:59:55.514 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 06:59:55.514 -07 000000576 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 06:59:55.814 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 06:59:55.814 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:59:55.814 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:59:55.814 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 06:59:55.814 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 06:59:55.814 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:59:55.814 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:59:55.814 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:59:55.814 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-18 06:59:55.824 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 539 ms.
17-03-18 06:59:55.864 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 06:59:55.864 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 06:59:55.914 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:59:55.914 -07 000000611 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:59:55.924 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:55.924 -07 000000480 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:59:55.924 -07 000000480 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 06:59:55.924 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.833 mm, average velocity = 2.148 mm/sec
17-03-18 06:59:56.874 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:59:56.874 -07 000000606 INF: FPGA: Recv YRDPOS 124378
17-03-18 06:59:56.884 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:59:56.884 -07 000000480 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:59:56.914 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 06:59:56.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 06:59:56.914 -07 000000480 INF: Y Motor: After move to 60.742607, error = -0.011162, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 06:59:56.914 -07 000000480 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 06:59:56.914 -07 000000480 INF: Y Motor: Moved to 60.7314 after 1439 ms (table move)
17-03-18 06:59:56.914 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171925 mm (DAC = 37557)
17-03-18 06:59:56.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:56.924 -07 000000437 INF: FPGA: Recv ZSGSRD 36049
17-03-18 06:59:56.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 06:59:56.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:56.924 -07 000000611 INF: FPGA: Recv ZSGSRD 36063
17-03-18 06:59:56.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 06:59:56.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:56.934 -07 000000480 INF: FPGA: Recv ZSGSRD 36053
17-03-18 06:59:56.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:56.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:56.944 -07 000000480 INF: FPGA: Recv ZSGSRD 36042
17-03-18 06:59:56.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:56.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:56.954 -07 000000480 INF: FPGA: Recv ZSGSRD 36051
17-03-18 06:59:56.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:56.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:56.964 -07 000000480 INF: FPGA: Recv ZSGSRD 36057
17-03-18 06:59:56.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:56.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:56.974 -07 000000480 INF: FPGA: Recv ZSGSRD 36054
17-03-18 06:59:56.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:56.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:56.984 -07 000000480 INF: FPGA: Recv ZSGSRD 36056
17-03-18 06:59:56.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:56.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:56.994 -07 000000480 INF: FPGA: Recv ZSGSRD 36051
17-03-18 06:59:57.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:57.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:57.004 -07 000000480 INF: FPGA: Recv ZSGSRD 36062
17-03-18 06:59:57.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:57.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:59:57.014 -07 000000480 INF: FPGA: Recv ZPIEZORD 31976
17-03-18 06:59:57.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:57.024 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.731 V. Piezo Error = -9.0 V.
17-03-18 06:59:57.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36054 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36054 (-171.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36042 (-171.0 uncal um), Max = 36063 (-171.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 06:59:57.024 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36054, posNoise = 9, negNoise = 12
17-03-18 06:59:57.024 -07 000000610 INF: Z Motor: After move to -0.171925, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:59:57.024 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 102 ms (allowed 150 ms), total time = 1544 ms
17-03-18 06:59:57.024 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 06:59:57.074 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 06:59:57.074 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 06:59:57.074 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7314453125, Z-position -0.171941896570185. ----------
17-03-18 06:59:57.074 -07 000000610 INF: Cycle	156	Tile	2	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 06:59:57.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37380, sync = True, waitForSettling = True)
17-03-18 06:59:57.074 -07 000000610 INF: Z Motor: Moving to -0.171115 mm, started at -0.171942 mm, distance = 0.83 um
17-03-18 06:59:57.074 -07 000000610 INF: FPGA: Xmit ZDACW 37380\n [Z Motor]
17-03-18 06:59:57.074 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 06:59:57.084 -07 000000610 INF: FPGA: 'ZDACW 37380' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 06:59:57.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:59:57.084 -07 000000480 INF: FPGA: Recv ZDACR 37380
17-03-18 06:59:57.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:57.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 06:59:57.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:57.244 -07 000000480 INF: FPGA: Recv ZSGSRD 35930
17-03-18 06:59:57.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 06:59:57.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:57.254 -07 000000480 INF: FPGA: Recv ZSGSRD 35929
17-03-18 06:59:57.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:57.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:57.264 -07 000000480 INF: FPGA: Recv ZSGSRD 35923
17-03-18 06:59:57.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:57.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:57.274 -07 000000480 INF: FPGA: Recv ZSGSRD 35924
17-03-18 06:59:57.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:59:57.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:57.284 -07 000000480 INF: FPGA: Recv ZSGSRD 35933
17-03-18 06:59:57.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:57.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:57.294 -07 000000480 INF: FPGA: Recv ZSGSRD 35929
17-03-18 06:59:57.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:57.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:57.304 -07 000000480 INF: FPGA: Recv ZSGSRD 35922
17-03-18 06:59:57.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:57.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:57.314 -07 000000461 INF: FPGA: Recv ZSGSRD 35931
17-03-18 06:59:57.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:57.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:57.324 -07 000000012 INF: FPGA: Recv ZSGSRD 35930
17-03-18 06:59:57.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:57.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 06:59:57.334 -07 000000437 INF: FPGA: Recv ZSGSRD 35927
17-03-18 06:59:57.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:57.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 06:59:57.344 -07 000000480 INF: FPGA: Recv ZPIEZORD 31814
17-03-18 06:59:57.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:57.354 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -9.1 V.
17-03-18 06:59:57.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35928 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35929 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35922 (-170.2 uncal um), Max = 35933 (-170.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 06:59:57.354 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35928, posNoise = 5, negNoise = 6
17-03-18 06:59:57.354 -07 000000610 INF: Z Motor: After move to -0.171115, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 06:59:57.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 06:59:57.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 06:59:57.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 06:59:57.354 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 06:59:57.354 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 06:59:57.354 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 06:59:57.354 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 06:59:57.354 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 06:59:57.354 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 06:59:57.354 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 06:59:57.354 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 06:59:57.354 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 06:59:57.354 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 06:59:57.364 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 06:59:57.364 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 06:59:57.364 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 06:59:57.364 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 06:59:57.374 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 06:59:57.374 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:59:57.374 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 06:59:57.374 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 06:59:57.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37557 150\n [Camera]
17-03-18 06:59:57.584 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 06:59:58.054 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 06:59:58.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 06:59:58.054 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:59:58.054 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 06:59:58.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 06:59:58.054 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:59:58.054 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:59:58.054 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 06:59:58.064 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:59:58.064 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 06:59:58.244 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37557 857
17-03-18 06:59:58.394 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 06:59:58.444 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 06:59:58.444 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 06:59:58.444 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:59:58.454 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 06:59:58.454 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 06:59:58.454 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:59:58.454 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:59:58.454 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 06:59:58.454 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 06:59:58.454 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 06:59:58.624 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 06:59:58.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 06:59:58.624 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 06:59:58.624 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 06:59:58.624 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 06:59:58.624 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 06:59:58.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 06:59:58.624 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 06:59:58.624 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 06:59:58.624 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 06:59:58.814 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 06:59:58.814 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 06:59:58.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37557 150' command took 2 ms to send, 1424 ms to get response, and 1434 ms overall
17-03-18 06:59:58.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 06:59:58.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7314453125, Z-Position -0.171132445840323. ------
17-03-18 06:59:58.824 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 06:59:58.824 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17789 mm
17-03-18 06:59:58.824 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 06:59:58.824 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 06:59:58.824 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 06:59:58.824 -07 000000501 INF: Y Motor: Moving to 61.5726 mm, started at 60.7314 mm, delta = 0.8412 mm
17-03-18 06:59:58.824 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38860, sync = True, waitForSettling = False)
17-03-18 06:59:58.824 -07 000000461 INF: Z Motor: Moving to -0.177890 mm, started at -0.171132 mm, distance = -6.76 um
17-03-18 06:59:58.834 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 06:59:58.834 -07 000000461 INF: FPGA: Xmit ZDACW 38860\n [Z Motor]
17-03-18 06:59:58.834 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 06:59:58.844 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:59:58.844 -07 000000461 INF: FPGA: 'ZDACW 38860' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 06:59:58.844 -07 000000576 INF: FPGA: Recv YRDPOS 124379
17-03-18 06:59:58.854 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 06:59:58.854 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 06:59:58.854 -07 000000501 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:59:58.854 -07 000000501 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 06:59:58.854 -07 000000501 INF: Y Motor: Moving 1345 steps-23
17-03-18 06:59:58.864 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 06:59:58.864 -07 000000480 INF: FPGA: Recv ZDACR 38860
17-03-18 06:59:58.874 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 06:59:58.874 -07 000000461 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 06:59:58.874 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 06:59:59.024 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 06:59:59.024 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 06:59:59.024 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:59:59.024 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 06:59:59.024 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 06:59:59.024 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 06:59:59.024 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:59:59.024 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 06:59:59.024 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 06:59:59.034 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 06:59:59.054 -07 000000437 INF: FPGA: Recv FOCMRRFOC
17-03-18 06:59:59.054 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 06:59:59.244 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 06:59:59.244 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 06:59:59.304 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 06:59:59.304 -07 000000585 INF: FPGA: Recv YRDPOS 126080
17-03-18 06:59:59.314 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 06:59:59.314 -07 000000501 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 06:59:59.314 -07 000000501 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 06:59:59.314 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.135 mm/sec
17-03-18 06:59:59.494 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.99219,
17-03-18 07:00:00.264 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:00.314 -07 000000606 INF: FPGA: Recv YRDPOS 126080
17-03-18 07:00:00.314 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 40 ms to get response, and 50 ms overall
17-03-18 07:00:00.314 -07 000000501 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:00.344 -07 000000501 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:00.344 -07 000000501 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:00.344 -07 000000501 INF: Y Motor: Moved to 61.5625 after 1523 ms (table move)
17-03-18 07:00:00.354 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177890 mm (DAC = 38860)
17-03-18 07:00:00.354 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:00.354 -07 000000012 INF: FPGA: Recv ZSGSRD 36978
17-03-18 07:00:00.364 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:00:00.364 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:00.364 -07 000000461 INF: FPGA: Recv ZSGSRD 36978
17-03-18 07:00:00.374 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:00.374 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:00.374 -07 000000576 INF: FPGA: Recv ZSGSRD 36983
17-03-18 07:00:00.384 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:00.384 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:00.384 -07 000000585 INF: FPGA: Recv ZSGSRD 36979
17-03-18 07:00:00.394 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:00.394 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:00.394 -07 000000012 INF: FPGA: Recv ZSGSRD 36980
17-03-18 07:00:00.404 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:00.404 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:00.404 -07 000000461 INF: FPGA: Recv ZSGSRD 36980
17-03-18 07:00:00.414 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:00.414 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:00.414 -07 000000606 INF: FPGA: Recv ZSGSRD 36984
17-03-18 07:00:00.424 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:00.424 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:00.424 -07 000000461 INF: FPGA: Recv ZSGSRD 36980
17-03-18 07:00:00.434 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:00.434 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:00.434 -07 000000012 INF: FPGA: Recv ZSGSRD 36966
17-03-18 07:00:00.444 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:00.444 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:00.444 -07 000000461 INF: FPGA: Recv ZSGSRD 36987
17-03-18 07:00:00.454 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:00.454 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:00.454 -07 000000585 INF: FPGA: Recv ZPIEZORD 33202
17-03-18 07:00:00.464 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:00.464 -07 000000611 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.930 V. Piezo Error = -8.4 V.
17-03-18 07:00:00.464 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36980 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36980 (-177.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36966 (-176.9 uncal um), Max = 36987 (-177.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-18 07:00:00.464 -07 000000611 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36980, posNoise = 7, negNoise = 14
17-03-18 07:00:00.464 -07 000000611 INF: Z Motor: After move to -0.177890, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:00.464 -07 000000611 INF: Z Motor: Settle wait time = 1526 ms, measure time = 109 ms (allowed 150 ms), total time = 1635 ms
17-03-18 07:00:00.464 -07 000000611 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:00.514 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1688 ms
17-03-18 07:00:00.514 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:00.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:00.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:00.514 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:00.514 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:00.514 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:00:00.514 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:00.514 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:00.514 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:00:00.524 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 07:00:00.524 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:00:00.534 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 07:00:00.534 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 07:00:00.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:00:00.574 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:00:00.874 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:00:00.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:00:00.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:00:00.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-18 07:00:00.914 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:00:00.914 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 07:00:00.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 07:00:01.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 07:00:01.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:01.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:00:01.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 07:00:01.114 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:00:01.114 -07 000000474 INF: Autofocus start
17-03-18 07:00:01.114 -07 000000474 INF: MeasureProfile start
17-03-18 07:00:01.114 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:00:01.124 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:00:01.124 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:00:01.124 -07 000000474 INF: MeasureProfile done
17-03-18 07:00:01.124 -07 000000474 INF: X=32  Z correction [um]=0.09220707
17-03-18 07:00:01.124 -07 000000474 INF: Autofocus finished
17-03-18 07:00:01.324 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:00:01.324 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:00:01.324 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.177890717013455. ----------
17-03-18 07:00:01.334 -07 000000610 INF: Cycle	156	Tile	3	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:01.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37393, sync = True, waitForSettling = True)
17-03-18 07:00:01.334 -07 000000610 INF: Z Motor: Moving to -0.171174 mm, started at -0.177891 mm, distance = 6.72 um
17-03-18 07:00:01.334 -07 000000610 INF: FPGA: Xmit ZDACW 37393\n [Z Motor]
17-03-18 07:00:01.334 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 07:00:01.344 -07 000000610 INF: FPGA: 'ZDACW 37393' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:00:01.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:01.344 -07 000000474 INF: FPGA: Recv ZDACR 37393
17-03-18 07:00:01.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:01.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:01.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:01.504 -07 000000474 INF: FPGA: Recv ZSGSRD 35930
17-03-18 07:00:01.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:01.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:01.514 -07 000000501 INF: FPGA: Recv ZSGSRD 35930
17-03-18 07:00:01.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:01.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:01.524 -07 000000437 INF: FPGA: Recv ZSGSRD 35941
17-03-18 07:00:01.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:01.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:01.534 -07 000000012 INF: FPGA: Recv ZSGSRD 35930
17-03-18 07:00:01.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:01.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:01.544 -07 000000012 INF: FPGA: Recv ZSGSRD 35939
17-03-18 07:00:01.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:01.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:01.554 -07 000000501 INF: FPGA: Recv ZSGSRD 35932
17-03-18 07:00:01.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:01.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:01.564 -07 000000480 INF: FPGA: Recv ZSGSRD 35933
17-03-18 07:00:01.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:01.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:01.574 -07 000000606 INF: FPGA: Recv ZSGSRD 35944
17-03-18 07:00:01.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:01.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:01.584 -07 000000461 INF: FPGA: Recv ZSGSRD 35924
17-03-18 07:00:01.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:01.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:01.594 -07 000000606 INF: FPGA: Recv ZSGSRD 35937
17-03-18 07:00:01.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:01.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:01.604 -07 000000012 INF: FPGA: Recv ZPIEZORD 31818
17-03-18 07:00:01.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:01.614 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -9.1 V.
17-03-18 07:00:01.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35934 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35932 (-170.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 35924 (-170.2 uncal um), Max = 35944 (-170.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 07:00:01.614 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35934, posNoise = 10, negNoise = 10
17-03-18 07:00:01.614 -07 000000610 INF: Z Motor: After move to -0.171174, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:01.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 07:00:01.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:01.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:01.614 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:01.614 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:01.614 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:01.614 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:01.614 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:01.614 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:01.614 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:00:01.614 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:01.614 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:01.614 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:01.624 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:00:01.624 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:01.624 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:00:01.624 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:01.634 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 07:00:01.634 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:00:01.634 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 07:00:01.634 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:00:01.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37570 150\n [Camera]
17-03-18 07:00:01.834 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:01.914 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:00:01.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:00:02.304 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:02.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:02.304 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:02.304 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:02.304 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) start.
17-03-18 07:00:02.314 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:02.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:02.314 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:02.444 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:02.444 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:00:02.494 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37570 857
17-03-18 07:00:02.644 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:02.694 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 07:00:02.694 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:00:02.694 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:02.694 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:02.694 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 07:00:02.824 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 07:00:02.824 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 07:00:02.824 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:02.824 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:02.834 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-18 07:00:02.874 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:02.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:02.874 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:02.884 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:02.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:02.884 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:02.884 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:02.884 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:00:02.884 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:02.884 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 07:00:03.064 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-18 07:00:03.064 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:03.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37570 150' command took 2 ms to send, 1429 ms to get response, and 1433 ms overall
17-03-18 07:00:03.074 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171436
17-03-18 07:00:03.074 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17144 mm
17-03-18 07:00:03.074 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:03.074 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 07:00:03.074 -07 000000585 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 07:00:03.074 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:03.074 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37450, sync = True, waitForSettling = False)
17-03-18 07:00:03.074 -07 000000576 INF: Z Motor: Moving to -0.171435 mm, started at -0.171171 mm, distance = -0.26 um
17-03-18 07:00:03.074 -07 000000437 INF: FPGA: Recv YRDPOS 126080
17-03-18 07:00:03.084 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:00:03.084 -07 000000576 INF: FPGA: Xmit ZDACW 37450\n [Z Motor]
17-03-18 07:00:03.084 -07 000000585 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:03.084 -07 000000585 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:03.084 -07 000000585 INF: Y Motor: Moving 1344 steps-21
17-03-18 07:00:03.084 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 07:00:03.094 -07 000000576 INF: FPGA: 'ZDACW 37450' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 07:00:03.094 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:03.104 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:03.104 -07 000000561 INF: FPGA: Recv ZDACR 37450
17-03-18 07:00:03.114 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:03.114 -07 000000576 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 07:00:03.264 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 07:00:03.264 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 07:00:03.264 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:03.264 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:00:03.264 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:00:03.264 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:03.264 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:03.264 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:03.274 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 07:00:03.274 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 07:00:03.464 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 07:00:03.464 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 07:00:03.524 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:03.524 -07 000000501 INF: FPGA: Recv YRDPOS 127784
17-03-18 07:00:03.534 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:00:03.534 -07 000000585 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:03.534 -07 000000585 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 07:00:03.534 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.182 mm/sec
17-03-18 07:00:04.484 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:04.484 -07 000000480 INF: FPGA: Recv YRDPOS 127784
17-03-18 07:00:04.494 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.494 -07 000000585 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:04.524 -07 000000585 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:04.524 -07 000000585 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:04.524 -07 000000585 INF: Y Motor: Moved to 62.3945 after 1448 ms (table move)
17-03-18 07:00:04.524 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171435 mm (DAC = 37450)
17-03-18 07:00:04.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.524 -07 000000541 INF: FPGA: Recv ZSGSRD 35981
17-03-18 07:00:04.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:00:04.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.534 -07 000000611 INF: FPGA: Recv ZSGSRD 35974
17-03-18 07:00:04.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.554 -07 000000461 INF: FPGA: Recv ZSGSRD 35965
17-03-18 07:00:04.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:04.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.564 -07 000000606 INF: FPGA: Recv ZSGSRD 35975
17-03-18 07:00:04.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.574 -07 000000581 INF: FPGA: Recv ZSGSRD 35981
17-03-18 07:00:04.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.584 -07 000000480 INF: FPGA: Recv ZSGSRD 35977
17-03-18 07:00:04.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.594 -07 000000461 INF: FPGA: Recv ZSGSRD 35991
17-03-18 07:00:04.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.604 -07 000000606 INF: FPGA: Recv ZSGSRD 35976
17-03-18 07:00:04.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.614 -07 000000625 INF: FPGA: Recv ZSGSRD 35972
17-03-18 07:00:04.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.624 -07 000000480 INF: FPGA: Recv ZSGSRD 35966
17-03-18 07:00:04.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:04.634 -07 000000541 INF: FPGA: Recv ZPIEZORD 31857
17-03-18 07:00:04.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.644 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.715 V. Piezo Error = -9.1 V.
17-03-18 07:00:04.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35976 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35976 (-170.6 uncal um), StdDev = 8 (0.1 uncal um), Range = 26 (0.2 uncal um), Min = 35965 (-170.5 uncal um), Max = 35991 (-170.7 uncal um), Pos Noise = 15 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 07:00:04.644 -07 000000610 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35976, posNoise = 15, negNoise = 11
17-03-18 07:00:04.644 -07 000000610 INF: Z Motor: After move to -0.171435, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:04.644 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 115 ms (allowed 150 ms), total time = 1565 ms
17-03-18 07:00:04.644 -07 000000610 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:04.684 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 07:00:04.684 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:04.684 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.171440808023127. ----------
17-03-18 07:00:04.684 -07 000000610 INF: Cycle	156	Tile	4	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:04.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37273, sync = True, waitForSettling = True)
17-03-18 07:00:04.684 -07 000000610 INF: Z Motor: Moving to -0.170625 mm, started at -0.171441 mm, distance = 0.82 um
17-03-18 07:00:04.684 -07 000000610 INF: FPGA: Xmit ZDACW 37273\n [Z Motor]
17-03-18 07:00:04.684 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:00:04.694 -07 000000610 INF: FPGA: 'ZDACW 37273' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:00:04.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:04.694 -07 000000012 INF: FPGA: Recv ZDACR 37273
17-03-18 07:00:04.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:04.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.854 -07 000000611 INF: FPGA: Recv ZSGSRD 35850
17-03-18 07:00:04.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:04.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.864 -07 000000461 INF: FPGA: Recv ZSGSRD 35850
17-03-18 07:00:04.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.884 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.015368,
17-03-18 07:00:04.884 -07 000000611 INF: FPGA: Recv ZSGSRD 35857
17-03-18 07:00:04.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:04.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.894 -07 000000581 INF: FPGA: Recv ZSGSRD 35849
17-03-18 07:00:04.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.914 -07 000000480 INF: FPGA: Recv ZSGSRD 35847
17-03-18 07:00:04.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:04.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.944 -07 000000541 INF: FPGA: Recv ZSGSRD 35855
17-03-18 07:00:04.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:00:04.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.964 -07 000000437 INF: FPGA: Recv ZSGSRD 35849
17-03-18 07:00:04.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:04.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.974 -07 000000474 INF: FPGA: Recv ZSGSRD 35856
17-03-18 07:00:04.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.984 -07 000000576 INF: FPGA: Recv ZSGSRD 35853
17-03-18 07:00:04.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:04.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:04.994 -07 000000501 INF: FPGA: Recv ZSGSRD 35845
17-03-18 07:00:05.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:05.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:05.004 -07 000000437 INF: FPGA: Recv ZPIEZORD 31732
17-03-18 07:00:05.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:05.014 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -9.1 V.
17-03-18 07:00:05.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35851 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35850 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35845 (-169.7 uncal um), Max = 35857 (-169.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:00:05.014 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35851, posNoise = 6, negNoise = 6
17-03-18 07:00:05.014 -07 000000610 INF: Z Motor: After move to -0.170625, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:05.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-18 07:00:05.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:05.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:05.014 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:05.014 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:05.014 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:05.014 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:05.014 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:05.014 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:05.014 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:05.014 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:05.014 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:00:05.014 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:05.014 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 07:00:05.014 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:05.024 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 07:00:05.024 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:05.024 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 07:00:05.024 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:00:05.024 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 07:00:05.024 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 07:00:05.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37450 150\n [Camera]
17-03-18 07:00:05.234 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:05.704 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:05.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:05.704 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:05.704 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:05.704 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 07:00:05.704 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:05.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:05.714 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:05.714 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:05.714 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) start.
17-03-18 07:00:05.894 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37450 857
17-03-18 07:00:06.044 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:06.094 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 07:00:06.094 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 07:00:06.094 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:06.094 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:06.094 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 07:00:06.094 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 07:00:06.094 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:00:06.094 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:06.104 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:06.114 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 07:00:06.294 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:06.294 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:06.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:06.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:06.294 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:06.294 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:06.304 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:06.304 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:06.304 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 07:00:06.304 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:00:06.464 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:00:06.464 -07 000000581 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:06.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37450 150' command took 2 ms to send, 1427 ms to get response, and 1435 ms overall
17-03-18 07:00:06.464 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171114
17-03-18 07:00:06.474 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17111 mm
17-03-18 07:00:06.474 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:06.474 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 07:00:06.474 -07 000000625 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 07:00:06.474 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:06.474 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37380, sync = True, waitForSettling = False)
17-03-18 07:00:06.474 -07 000000461 INF: Z Motor: Moving to -0.171115 mm, started at -0.170638 mm, distance = -0.48 um
17-03-18 07:00:06.474 -07 000000611 INF: FPGA: Recv YRDPOS 127784
17-03-18 07:00:06.484 -07 000000461 INF: FPGA: Xmit ZDACW 37380\n [Z Motor]
17-03-18 07:00:06.484 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:00:06.484 -07 000000625 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:06.484 -07 000000625 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:06.484 -07 000000625 INF: Y Motor: Moving 1341 steps-17
17-03-18 07:00:06.484 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:00:06.494 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:06.494 -07 000000461 INF: FPGA: 'ZDACW 37380' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 07:00:06.504 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:06.504 -07 000000474 INF: FPGA: Recv ZDACR 37380
17-03-18 07:00:06.514 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:06.514 -07 000000461 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 07:00:06.674 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 07:00:06.674 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 07:00:06.674 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:06.674 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:06.674 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 07:00:06.674 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 07:00:06.674 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:06.684 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 07:00:06.684 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:06.684 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:00:06.864 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 07:00:06.864 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 07:00:06.914 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:00:06.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:00:06.924 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:06.924 -07 000000611 INF: FPGA: Recv YRDPOS 129479
17-03-18 07:00:06.934 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:00:06.934 -07 000000625 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:06.934 -07 000000625 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 07:00:06.934 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.166 mm/sec
17-03-18 07:00:07.884 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:07.884 -07 000000611 INF: FPGA: Recv YRDPOS 129479
17-03-18 07:00:07.894 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:07.894 -07 000000625 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:07.924 -07 000000625 INF: Y Motor: After move to 63.232609, error = -0.010441, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:07.924 -07 000000625 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:07.924 -07 000000625 INF: Y Motor: Moved to 63.2222 after 1449 ms (table move)
17-03-18 07:00:07.924 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171115 mm (DAC = 37380)
17-03-18 07:00:07.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:07.924 -07 000000611 INF: FPGA: Recv ZSGSRD 35924
17-03-18 07:00:07.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:00:07.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:07.934 -07 000000606 INF: FPGA: Recv ZSGSRD 35925
17-03-18 07:00:07.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:07.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:07.944 -07 000000576 INF: FPGA: Recv ZSGSRD 35922
17-03-18 07:00:07.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:07.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:07.954 -07 000000625 INF: FPGA: Recv ZSGSRD 35926
17-03-18 07:00:07.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:07.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:07.964 -07 000000576 INF: FPGA: Recv ZSGSRD 35926
17-03-18 07:00:07.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:07.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:07.974 -07 000000474 INF: FPGA: Recv ZSGSRD 35926
17-03-18 07:00:07.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:07.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:07.984 -07 000000576 INF: FPGA: Recv ZSGSRD 35921
17-03-18 07:00:07.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:07.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:07.994 -07 000000501 INF: FPGA: Recv ZSGSRD 35928
17-03-18 07:00:08.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:08.004 -07 000000625 INF: FPGA: Recv ZSGSRD 35924
17-03-18 07:00:08.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:08.014 -07 000000606 INF: FPGA: Recv ZSGSRD 35929
17-03-18 07:00:08.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:08.024 -07 000000581 INF: FPGA: Recv ZPIEZORD 31808
17-03-18 07:00:08.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.034 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -9.1 V.
17-03-18 07:00:08.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35925 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35926 (-170.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35921 (-170.2 uncal um), Max = 35929 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:00:08.034 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35925, posNoise = 4, negNoise = 4
17-03-18 07:00:08.034 -07 000000610 INF: Z Motor: After move to -0.171115, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:08.034 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 105 ms (allowed 150 ms), total time = 1556 ms
17-03-18 07:00:08.034 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:08.084 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 07:00:08.084 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:08.084 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22216796875, Z-position -0.171113173203897. ----------
17-03-18 07:00:08.084 -07 000000610 INF: Cycle	156	Tile	5	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:08.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37203, sync = True, waitForSettling = True)
17-03-18 07:00:08.084 -07 000000610 INF: Z Motor: Moving to -0.170304 mm, started at -0.171113 mm, distance = 0.81 um
17-03-18 07:00:08.084 -07 000000610 INF: FPGA: Xmit ZDACW 37203\n [Z Motor]
17-03-18 07:00:08.084 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 07:00:08.094 -07 000000610 INF: FPGA: 'ZDACW 37203' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:00:08.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:08.094 -07 000000611 INF: FPGA: Recv ZDACR 37203
17-03-18 07:00:08.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:08.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:08.254 -07 000000576 INF: FPGA: Recv ZSGSRD 35803
17-03-18 07:00:08.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:08.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:08.264 -07 000000606 INF: FPGA: Recv ZSGSRD 35799
17-03-18 07:00:08.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:08.274 -07 000000474 INF: FPGA: Recv ZSGSRD 35804
17-03-18 07:00:08.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:08.284 -07 000000576 INF: FPGA: Recv ZSGSRD 35800
17-03-18 07:00:08.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:08.294 -07 000000474 INF: FPGA: Recv ZSGSRD 35795
17-03-18 07:00:08.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:08.304 -07 000000576 INF: FPGA: Recv ZSGSRD 35799
17-03-18 07:00:08.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:08.314 -07 000000606 INF: FPGA: Recv ZSGSRD 35802
17-03-18 07:00:08.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:08.324 -07 000000576 INF: FPGA: Recv ZSGSRD 35809
17-03-18 07:00:08.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:08.334 -07 000000606 INF: FPGA: Recv ZSGSRD 35800
17-03-18 07:00:08.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:08.344 -07 000000611 INF: FPGA: Recv ZSGSRD 35797
17-03-18 07:00:08.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:08.354 -07 000000581 INF: FPGA: Recv ZPIEZORD 31616
17-03-18 07:00:08.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:08.364 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -9.2 V.
17-03-18 07:00:08.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35801 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35800 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35795 (-169.4 uncal um), Max = 35809 (-169.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:00:08.364 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35801, posNoise = 8, negNoise = 6
17-03-18 07:00:08.364 -07 000000610 INF: Z Motor: After move to -0.170304, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:08.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 07:00:08.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:08.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:08.364 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:08.364 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:08.364 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:08.364 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:08.364 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:08.364 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:08.364 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:08.364 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:08.364 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:08.364 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:08.374 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:00:08.374 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:08.374 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:00:08.374 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:08.384 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 07:00:08.384 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 07:00:08.384 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 07:00:08.384 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 07:00:08.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37380 150\n [Camera]
17-03-18 07:00:08.584 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:09.064 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:09.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:09.064 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:09.064 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:09.064 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 07:00:09.064 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:09.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:09.064 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:09.064 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:09.064 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:00:09.254 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37380 857
17-03-18 07:00:09.404 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:09.444 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 07:00:09.444 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 07:00:09.444 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:09.444 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 07:00:09.444 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 07:00:09.444 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:09.444 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:00:09.444 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:00:09.444 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:09.454 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 07:00:09.634 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:09.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:09.634 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:09.634 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:09.634 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) start.
17-03-18 07:00:09.634 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:09.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:09.634 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:09.754 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:09.754 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:00:09.824 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:00:09.824 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:09.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37380 150' command took 2 ms to send, 1422 ms to get response, and 1433 ms overall
17-03-18 07:00:09.824 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.170582
17-03-18 07:00:09.824 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17058 mm
17-03-18 07:00:09.824 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:09.824 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 07:00:09.824 -07 000000541 INF: Y Motor: Moving to 64.0626 mm, started at 63.2222 mm, delta = 0.8404 mm
17-03-18 07:00:09.824 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:09.824 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 37264, sync = True, waitForSettling = False)
17-03-18 07:00:09.824 -07 000000581 INF: Z Motor: Moving to -0.170584 mm, started at -0.170317 mm, distance = -0.27 um
17-03-18 07:00:09.834 -07 000000581 INF: FPGA: Xmit ZDACW 37264\n [Z Motor]
17-03-18 07:00:09.834 -07 000000625 INF: FPGA: Recv YRDPOS 129480
17-03-18 07:00:09.834 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:00:09.834 -07 000000541 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:09.834 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 07:00:09.834 -07 000000541 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:09.834 -07 000000541 INF: Y Motor: Moving 1344 steps-21
17-03-18 07:00:09.844 -07 000000581 INF: FPGA: 'ZDACW 37264' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:09.844 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:09.854 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:09.854 -07 000000625 INF: FPGA: Recv ZDACR 37264
17-03-18 07:00:09.864 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:09.864 -07 000000581 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 07:00:10.014 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 07:00:10.014 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:00:10.014 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:10.014 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:10.014 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:00:10.124 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 07:00:10.124 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 07:00:10.134 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:10.134 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:10.144 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-18 07:00:10.224 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 07:00:10.224 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 384 ms overall
17-03-18 07:00:10.284 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:10.284 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.005817,
17-03-18 07:00:10.284 -07 000000474 INF: FPGA: Recv YRDPOS 131186
17-03-18 07:00:10.294 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 07:00:10.294 -07 000000541 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:10.294 -07 000000541 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 07:00:10.294 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.840 mm, average velocity = 2.189 mm/sec
17-03-18 07:00:11.244 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:11.244 -07 000000625 INF: FPGA: Recv YRDPOS 131186
17-03-18 07:00:11.254 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.254 -07 000000541 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:11.284 -07 000000541 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:11.284 -07 000000541 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:11.284 -07 000000541 INF: Y Motor: Moved to 64.0557 after 1451 ms (table move)
17-03-18 07:00:11.284 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170584 mm (DAC = 37264)
17-03-18 07:00:11.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.284 -07 000000581 INF: FPGA: Recv ZSGSRD 35844
17-03-18 07:00:11.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:00:11.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.294 -07 000000480 INF: FPGA: Recv ZSGSRD 35842
17-03-18 07:00:11.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.304 -07 000000474 INF: FPGA: Recv ZSGSRD 35848
17-03-18 07:00:11.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.314 -07 000000606 INF: FPGA: Recv ZSGSRD 35846
17-03-18 07:00:11.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.324 -07 000000576 INF: FPGA: Recv ZSGSRD 35843
17-03-18 07:00:11.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.334 -07 000000611 INF: FPGA: Recv ZSGSRD 35840
17-03-18 07:00:11.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.344 -07 000000501 INF: FPGA: Recv ZSGSRD 35842
17-03-18 07:00:11.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.354 -07 000000606 INF: FPGA: Recv ZSGSRD 35844
17-03-18 07:00:11.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.364 -07 000000625 INF: FPGA: Recv ZSGSRD 35846
17-03-18 07:00:11.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.374 -07 000000480 INF: FPGA: Recv ZSGSRD 35844
17-03-18 07:00:11.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:11.384 -07 000000501 INF: FPGA: Recv ZPIEZORD 31709
17-03-18 07:00:11.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.394 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.1 V.
17-03-18 07:00:11.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35844 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35844 (-169.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35840 (-169.7 uncal um), Max = 35848 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:00:11.394 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35844, posNoise = 4, negNoise = 4
17-03-18 07:00:11.394 -07 000000610 INF: Z Motor: After move to -0.170584, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:11.394 -07 000000610 INF: Z Motor: Settle wait time = 1453 ms, measure time = 108 ms (allowed 150 ms), total time = 1561 ms
17-03-18 07:00:11.394 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:11.444 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 07:00:11.444 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:11.444 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.170592812020415. ----------
17-03-18 07:00:11.444 -07 000000610 INF: Cycle	156	Tile	6	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:11.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37087, sync = True, waitForSettling = True)
17-03-18 07:00:11.444 -07 000000610 INF: Z Motor: Moving to -0.169773 mm, started at -0.170593 mm, distance = 0.82 um
17-03-18 07:00:11.444 -07 000000610 INF: FPGA: Xmit ZDACW 37087\n [Z Motor]
17-03-18 07:00:11.444 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:00:11.454 -07 000000610 INF: FPGA: 'ZDACW 37087' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:00:11.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:11.454 -07 000000576 INF: FPGA: Recv ZDACR 37087
17-03-18 07:00:11.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:11.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.614 -07 000000501 INF: FPGA: Recv ZSGSRD 35716
17-03-18 07:00:11.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.624 -07 000000576 INF: FPGA: Recv ZSGSRD 35724
17-03-18 07:00:11.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:11.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.634 -07 000000625 INF: FPGA: Recv ZSGSRD 35718
17-03-18 07:00:11.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.644 -07 000000480 INF: FPGA: Recv ZSGSRD 35712
17-03-18 07:00:11.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.654 -07 000000606 INF: FPGA: Recv ZSGSRD 35712
17-03-18 07:00:11.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.664 -07 000000480 INF: FPGA: Recv ZSGSRD 35722
17-03-18 07:00:11.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.674 -07 000000606 INF: FPGA: Recv ZSGSRD 35721
17-03-18 07:00:11.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.684 -07 000000480 INF: FPGA: Recv ZSGSRD 35715
17-03-18 07:00:11.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.694 -07 000000611 INF: FPGA: Recv ZSGSRD 35717
17-03-18 07:00:11.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:11.704 -07 000000480 INF: FPGA: Recv ZSGSRD 35716
17-03-18 07:00:11.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:11.714 -07 000000501 INF: FPGA: Recv ZPIEZORD 31529
17-03-18 07:00:11.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:11.724 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -9.2 V.
17-03-18 07:00:11.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35717 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35716 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35712 (-168.9 uncal um), Max = 35724 (-168.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:00:11.724 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35717, posNoise = 7, negNoise = 5
17-03-18 07:00:11.724 -07 000000610 INF: Z Motor: After move to -0.169773, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:11.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 07:00:11.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:11.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:11.724 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:11.724 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:11.724 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:11.724 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:11.724 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:11.724 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:11.724 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:11.724 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:11.724 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:11.724 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:11.734 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:00:11.734 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:11.734 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:00:11.734 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:11.744 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:00:11.744 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:00:11.744 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:00:11.744 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:00:11.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37264 150\n [Camera]
17-03-18 07:00:11.914 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:00:11.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:00:11.944 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:12.424 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:12.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:12.424 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:12.424 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:12.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:12.424 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:12.424 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:12.424 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:00:12.434 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:12.434 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 07:00:12.614 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37264 857
17-03-18 07:00:12.764 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:12.804 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 07:00:12.804 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 07:00:12.804 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:12.804 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 07:00:12.804 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 07:00:12.804 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:12.804 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:12.804 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 07:00:12.804 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:12.814 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:00:12.994 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:12.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:12.994 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:12.994 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:12.994 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 07:00:12.994 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:12.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:12.994 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:12.994 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:12.994 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) start.
17-03-18 07:00:13.184 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:00:13.184 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:13.184 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37264 150' command took 2 ms to send, 1423 ms to get response, and 1433 ms overall
17-03-18 07:00:13.184 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 07:00:13.184 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.169776937078411. ------
17-03-18 07:00:13.194 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17612 mm
17-03-18 07:00:13.194 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:13.194 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:00:13.194 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 07:00:13.194 -07 000000501 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 07:00:13.194 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38473, sync = True, waitForSettling = False)
17-03-18 07:00:13.194 -07 000000576 INF: Z Motor: Moving to -0.176118 mm, started at -0.169777 mm, distance = -6.34 um
17-03-18 07:00:13.194 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:00:13.204 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:00:13.204 -07 000000576 INF: FPGA: Xmit ZDACW 38473\n [Z Motor]
17-03-18 07:00:13.204 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 07:00:13.214 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:13.214 -07 000000576 INF: FPGA: 'ZDACW 38473' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 07:00:13.214 -07 000000437 INF: FPGA: Recv YRDPOS 131186
17-03-18 07:00:13.224 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:00:13.224 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 07:00:13.224 -07 000000501 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:13.224 -07 000000501 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:13.224 -07 000000501 INF: Y Motor: Moving 1339 steps-14
17-03-18 07:00:13.234 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:13.234 -07 000000561 INF: FPGA: Recv ZDACR 38473
17-03-18 07:00:13.244 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:00:13.244 -07 000000576 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 07:00:13.244 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:13.374 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 07:00:13.374 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 07:00:13.374 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:13.384 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 07:00:13.384 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 07:00:13.384 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:13.384 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:00:13.384 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:00:13.384 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 07:00:13.394 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 07:00:13.424 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:00:13.424 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 07:00:13.614 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 07:00:13.614 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 07:00:13.674 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:13.674 -07 000000611 INF: FPGA: Recv YRDPOS 132869
17-03-18 07:00:13.684 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:00:13.684 -07 000000501 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:13.684 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 07:00:13.684 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-18 07:00:14.634 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:14.634 -07 000000611 INF: FPGA: Recv YRDPOS 132869
17-03-18 07:00:14.644 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:14.644 -07 000000501 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:14.674 -07 000000501 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:14.674 -07 000000501 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:14.674 -07 000000501 INF: Y Motor: Moved to 64.8774 after 1478 ms (table move)
17-03-18 07:00:14.674 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176118 mm (DAC = 38473)
17-03-18 07:00:14.674 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:14.674 -07 000000606 INF: FPGA: Recv ZSGSRD 36699
17-03-18 07:00:14.684 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:00:14.684 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:14.684 -07 000000585 INF: FPGA: Recv ZSGSRD 36709
17-03-18 07:00:14.694 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:14.694 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:14.694 -07 000000501 INF: FPGA: Recv ZSGSRD 36704
17-03-18 07:00:14.704 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:14.704 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:14.704 -07 000000012 INF: FPGA: Recv ZSGSRD 36711
17-03-18 07:00:14.714 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:14.714 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:14.714 -07 000000437 INF: FPGA: Recv ZSGSRD 36701
17-03-18 07:00:14.724 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:14.724 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:14.724 -07 000000585 INF: FPGA: Recv ZSGSRD 36704
17-03-18 07:00:14.734 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:14.734 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:14.734 -07 000000561 INF: FPGA: Recv ZSGSRD 36704
17-03-18 07:00:14.744 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:14.744 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:14.744 -07 000000585 INF: FPGA: Recv ZSGSRD 36703
17-03-18 07:00:14.754 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:14.754 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:14.754 -07 000000576 INF: FPGA: Recv ZSGSRD 36709
17-03-18 07:00:14.764 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:14.764 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:14.764 -07 000000437 INF: FPGA: Recv ZSGSRD 36703
17-03-18 07:00:14.774 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:00:14.774 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:14.774 -07 000000611 INF: FPGA: Recv ZPIEZORD 32892
17-03-18 07:00:14.784 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:14.784 -07 000000625 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.871 V. Piezo Error = -8.4 V.
17-03-18 07:00:14.784 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36705 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36704 (-175.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36699 (-175.2 uncal um), Max = 36711 (-175.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:00:14.784 -07 000000625 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36705, posNoise = 6, negNoise = 6
17-03-18 07:00:14.784 -07 000000625 INF: Z Motor: After move to -0.176118, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:14.784 -07 000000625 INF: Z Motor: Settle wait time = 1481 ms, measure time = 104 ms (allowed 150 ms), total time = 1585 ms
17-03-18 07:00:14.784 -07 000000625 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:14.834 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1638 ms
17-03-18 07:00:14.834 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:14.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:14.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:14.834 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:14.834 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:00:14.834 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:14.834 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:14.834 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:14.834 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:00:14.844 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:00:14.844 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:00:14.854 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 07:00:14.854 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 07:00:14.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:00:14.894 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:00:15.194 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:00:15.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:00:15.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:00:15.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-18 07:00:15.234 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:00:15.244 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 07:00:15.244 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 387 ms overall
17-03-18 07:00:15.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 07:00:15.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:15.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:00:15.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 07:00:15.344 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:00:15.344 -07 000000585 INF: Autofocus start
17-03-18 07:00:15.344 -07 000000585 INF: MeasureProfile start
17-03-18 07:00:15.344 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:00:15.354 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:00:15.354 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:00:15.354 -07 000000585 INF: MeasureProfile done
17-03-18 07:00:15.354 -07 000000585 INF: X=16  Z correction [um]=0.01042744
17-03-18 07:00:15.354 -07 000000585 INF: Autofocus finished
17-03-18 07:00:15.554 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:00:15.554 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:00:15.554 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.176124058674471. ----------
17-03-18 07:00:15.554 -07 000000610 INF: Cycle	156	Tile	7	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:15.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36988, sync = True, waitForSettling = True)
17-03-18 07:00:15.564 -07 000000610 INF: Z Motor: Moving to -0.169320 mm, started at -0.176124 mm, distance = 6.80 um
17-03-18 07:00:15.564 -07 000000610 INF: FPGA: Xmit ZDACW 36988\n [Z Motor]
17-03-18 07:00:15.564 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 07:00:15.574 -07 000000610 INF: FPGA: 'ZDACW 36988' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:00:15.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:15.574 -07 000000611 INF: FPGA: Recv ZDACR 36988
17-03-18 07:00:15.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:15.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:15.654 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.014009,
17-03-18 07:00:15.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:15.734 -07 000000012 INF: FPGA: Recv ZSGSRD 35646
17-03-18 07:00:15.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:15.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:15.744 -07 000000576 INF: FPGA: Recv ZSGSRD 35651
17-03-18 07:00:15.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:15.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:15.754 -07 000000012 INF: FPGA: Recv ZSGSRD 35648
17-03-18 07:00:15.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:15.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:15.764 -07 000000576 INF: FPGA: Recv ZSGSRD 35643
17-03-18 07:00:15.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:15.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:15.774 -07 000000012 INF: FPGA: Recv ZSGSRD 35640
17-03-18 07:00:15.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:15.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:15.784 -07 000000576 INF: FPGA: Recv ZSGSRD 35645
17-03-18 07:00:15.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:15.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:15.794 -07 000000606 INF: FPGA: Recv ZSGSRD 35648
17-03-18 07:00:15.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:15.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:15.804 -07 000000606 INF: FPGA: Recv ZSGSRD 35649
17-03-18 07:00:15.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:15.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:15.814 -07 000000606 INF: FPGA: Recv ZSGSRD 35648
17-03-18 07:00:15.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:15.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:15.824 -07 000000611 INF: FPGA: Recv ZSGSRD 35648
17-03-18 07:00:15.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:15.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:15.834 -07 000000012 INF: FPGA: Recv ZPIEZORD 31464
17-03-18 07:00:15.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:15.844 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -9.2 V.
17-03-18 07:00:15.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35647 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35648 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35640 (-168.4 uncal um), Max = 35651 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:00:15.844 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35647, posNoise = 4, negNoise = 7
17-03-18 07:00:15.844 -07 000000610 INF: Z Motor: After move to -0.169320, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:15.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 07:00:15.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:15.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:15.844 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:15.844 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:15.844 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:15.844 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:15.844 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:15.844 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:15.844 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:00:15.844 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 07:00:15.844 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:15.844 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:15.844 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 07:00:15.854 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:15.854 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:00:15.854 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:15.854 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 07:00:15.854 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 07:00:15.854 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 07:00:15.854 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:00:15.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37165 150\n [Camera]
17-03-18 07:00:16.064 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:16.534 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:16.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:16.534 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:16.534 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:16.534 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 07:00:16.534 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:16.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:16.534 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:16.534 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:16.534 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 07:00:16.724 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37165 857
17-03-18 07:00:16.874 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:16.904 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 07:00:16.914 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 07:00:16.914 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:16.914 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:16.914 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:00:16.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:00:16.914 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 07:00:16.914 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:00:16.914 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:16.914 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:16.914 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:00:16.924 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 07:00:17.104 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:17.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:17.104 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:17.104 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:17.104 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 07:00:17.104 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:17.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:17.104 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:17.104 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:17.104 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:00:17.294 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:00:17.294 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:17.294 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37165 150' command took 2 ms to send, 1424 ms to get response, and 1433 ms overall
17-03-18 07:00:17.294 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170065
17-03-18 07:00:17.294 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17007 mm
17-03-18 07:00:17.294 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:17.294 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 07:00:17.294 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37151, sync = True, waitForSettling = False)
17-03-18 07:00:17.294 -07 000000561 INF: Z Motor: Moving to -0.170066 mm, started at -0.169327 mm, distance = -0.74 um
17-03-18 07:00:17.294 -07 000000561 INF: FPGA: Xmit ZDACW 37151\n [Z Motor]
17-03-18 07:00:17.294 -07 000000501 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 07:00:17.304 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:17.484 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:00:17.484 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:00:17.484 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:17.484 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:00:17.484 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 07:00:17.484 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:17.494 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:17.494 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 07:00:17.494 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:00:17.494 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 07:00:17.504 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 07:00:17.504 -07 000000480 INF: FPGA: Recv YRDPOS 132869
17-03-18 07:00:17.504 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 07:00:17.504 -07 000000501 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:17.504 -07 000000501 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:17.504 -07 000000501 INF: Y Motor: Moving 1352 steps-31
17-03-18 07:00:17.634 -07 000000561 INF: FPGA: 'ZDACW 37151' command took 0 ms to send, 202 ms to get response, and 203 ms overall
17-03-18 07:00:17.634 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:17.644 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:17.644 -07 000000480 INF: FPGA: Recv ZDACR 37151
17-03-18 07:00:17.654 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 07:00:17.654 -07 000000561 INF: Z Motor: MoveAbsStepped took 351 ms (did NOT wait for settling yet))
17-03-18 07:00:18.014 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 07:00:18.014 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-18 07:00:18.064 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:18.064 -07 000000541 INF: FPGA: Recv YRDPOS 134580
17-03-18 07:00:18.074 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:00:18.074 -07 000000501 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:18.074 -07 000000501 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 07:00:18.074 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.845 mm, average velocity = 2.230 mm/sec
17-03-18 07:00:19.024 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:19.024 -07 000000480 INF: FPGA: Recv YRDPOS 134580
17-03-18 07:00:19.034 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:19.034 -07 000000501 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:19.074 -07 000000501 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:19.074 -07 000000501 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:19.074 -07 000000501 INF: Y Motor: Moved to 65.7129 after 1772 ms (table move)
17-03-18 07:00:19.074 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170066 mm (DAC = 37151)
17-03-18 07:00:19.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.074 -07 000000581 INF: FPGA: Recv ZSGSRD 35768
17-03-18 07:00:19.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:00:19.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.084 -07 000000541 INF: FPGA: Recv ZSGSRD 35762
17-03-18 07:00:19.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.094 -07 000000581 INF: FPGA: Recv ZSGSRD 35764
17-03-18 07:00:19.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.104 -07 000000501 INF: FPGA: Recv ZSGSRD 35766
17-03-18 07:00:19.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.114 -07 000000541 INF: FPGA: Recv ZSGSRD 35766
17-03-18 07:00:19.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.124 -07 000000501 INF: FPGA: Recv ZSGSRD 35764
17-03-18 07:00:19.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.134 -07 000000561 INF: FPGA: Recv ZSGSRD 35763
17-03-18 07:00:19.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.144 -07 000000581 INF: FPGA: Recv ZSGSRD 35760
17-03-18 07:00:19.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.154 -07 000000480 INF: FPGA: Recv ZSGSRD 35764
17-03-18 07:00:19.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.164 -07 000000501 INF: FPGA: Recv ZSGSRD 35769
17-03-18 07:00:19.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:19.174 -07 000000541 INF: FPGA: Recv ZPIEZORD 31607
17-03-18 07:00:19.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.184 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.669 V. Piezo Error = -9.2 V.
17-03-18 07:00:19.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35765 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35764 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35760 (-169.2 uncal um), Max = 35769 (-169.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:00:19.184 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35765, posNoise = 4, negNoise = 5
17-03-18 07:00:19.184 -07 000000610 INF: Z Motor: After move to -0.170066, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:19.184 -07 000000610 INF: Z Motor: Settle wait time = 1774 ms, measure time = 107 ms (allowed 150 ms), total time = 1881 ms
17-03-18 07:00:19.184 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:19.234 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1933 ms
17-03-18 07:00:19.234 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:19.234 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.170085299261216. ----------
17-03-18 07:00:19.234 -07 000000610 INF: Cycle	156	Tile	8	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:19.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36974, sync = True, waitForSettling = True)
17-03-18 07:00:19.234 -07 000000610 INF: Z Motor: Moving to -0.169256 mm, started at -0.170085 mm, distance = 0.83 um
17-03-18 07:00:19.234 -07 000000610 INF: FPGA: Xmit ZDACW 36974\n [Z Motor]
17-03-18 07:00:19.244 -07 000000541 INF: FPGA: Recv ZDACW
17-03-18 07:00:19.244 -07 000000610 INF: FPGA: 'ZDACW 36974' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 07:00:19.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:19.244 -07 000000461 INF: FPGA: Recv ZDACR 36974
17-03-18 07:00:19.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:00:19.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:19.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.404 -07 000000581 INF: FPGA: Recv ZSGSRD 35628
17-03-18 07:00:19.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:19.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.414 -07 000000461 INF: FPGA: Recv ZSGSRD 35642
17-03-18 07:00:19.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.424 -07 000000576 INF: FPGA: Recv ZSGSRD 35639
17-03-18 07:00:19.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.434 -07 000000461 INF: FPGA: Recv ZSGSRD 35635
17-03-18 07:00:19.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.444 -07 000000501 INF: FPGA: Recv ZSGSRD 35636
17-03-18 07:00:19.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.454 -07 000000461 INF: FPGA: Recv ZSGSRD 35634
17-03-18 07:00:19.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.464 -07 000000501 INF: FPGA: Recv ZSGSRD 35638
17-03-18 07:00:19.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.474 -07 000000576 INF: FPGA: Recv ZSGSRD 35634
17-03-18 07:00:19.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.484 -07 000000501 INF: FPGA: Recv ZSGSRD 35640
17-03-18 07:00:19.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:19.494 -07 000000581 INF: FPGA: Recv ZSGSRD 35639
17-03-18 07:00:19.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:19.504 -07 000000576 INF: FPGA: Recv ZPIEZORD 31465
17-03-18 07:00:19.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:19.514 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.642 V. Piezo Error = -9.2 V.
17-03-18 07:00:19.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35636 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35637 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35628 (-168.3 uncal um), Max = 35642 (-168.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:00:19.514 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35636, posNoise = 6, negNoise = 8
17-03-18 07:00:19.514 -07 000000610 INF: Z Motor: After move to -0.169256, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:19.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:00:19.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:19.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:19.514 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:19.514 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:19.514 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:19.514 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:19.514 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:19.514 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:19.514 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 07:00:19.514 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:19.514 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:19.514 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:19.524 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 07:00:19.524 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:19.524 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:00:19.524 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:19.524 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 07:00:19.524 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 07:00:19.534 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 07:00:19.534 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 07:00:19.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37151 150\n [Camera]
17-03-18 07:00:19.734 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:20.204 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:20.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:20.204 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:20.204 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:20.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:20.204 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:20.214 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:20.214 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 07:00:20.214 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:20.214 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 07:00:20.394 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37151 857
17-03-18 07:00:20.544 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:20.584 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 07:00:20.584 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 07:00:20.584 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:20.594 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:00:20.594 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 07:00:20.594 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:00:20.594 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:20.594 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:00:20.594 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 07:00:20.604 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 07:00:20.774 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:20.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:20.774 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:20.774 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:20.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:20.774 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:20.774 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:20.774 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:00:20.774 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:20.774 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 07:00:20.964 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:00:20.964 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:20.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37151 150' command took 2 ms to send, 1425 ms to get response, and 1433 ms overall
17-03-18 07:00:20.964 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169645
17-03-18 07:00:20.964 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16964 mm
17-03-18 07:00:20.964 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:20.964 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 07:00:20.964 -07 000000501 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 07:00:20.974 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:20.974 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 37059, sync = True, waitForSettling = False)
17-03-18 07:00:20.974 -07 000000012 INF: Z Motor: Moving to -0.169645 mm, started at -0.169257 mm, distance = -0.39 um
17-03-18 07:00:20.974 -07 000000576 INF: FPGA: Recv YRDPOS 134580
17-03-18 07:00:20.984 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:20.984 -07 000000501 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:20.984 -07 000000501 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:20.984 -07 000000501 INF: Y Motor: Moving 1344 steps-20
17-03-18 07:00:20.984 -07 000000012 INF: FPGA: Xmit ZDACW 37059\n [Z Motor]
17-03-18 07:00:20.984 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 07:00:20.994 -07 000000012 INF: FPGA: 'ZDACW 37059' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:20.994 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:21.004 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:21.004 -07 000000611 INF: FPGA: Recv ZDACR 37059
17-03-18 07:00:21.014 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:21.014 -07 000000012 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 07:00:21.024 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.03576,
17-03-18 07:00:21.154 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:00:21.154 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 07:00:21.154 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:21.154 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 07:00:21.154 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 07:00:21.154 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:21.164 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:21.164 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:00:21.164 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:21.174 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 07:00:21.364 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-18 07:00:21.364 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 07:00:21.424 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:21.424 -07 000000541 INF: FPGA: Recv YRDPOS 136269
17-03-18 07:00:21.434 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:00:21.434 -07 000000501 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:21.434 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 07:00:21.434 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.181 mm/sec
17-03-18 07:00:21.914 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:00:21.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:00:22.384 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:22.384 -07 000000474 INF: FPGA: Recv YRDPOS 136270
17-03-18 07:00:22.394 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.394 -07 000000501 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:22.424 -07 000000501 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:22.424 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:00:22.424 -07 000000501 INF: Y Motor: Moved to 66.5381 after 1456 ms (table move)
17-03-18 07:00:22.424 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169645 mm (DAC = 37059)
17-03-18 07:00:22.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.434 -07 000000501 INF: FPGA: Recv ZSGSRD 35697
17-03-18 07:00:22.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:00:22.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.434 -07 000000541 INF: FPGA: Recv ZSGSRD 35692
17-03-18 07:00:22.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:00:22.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.444 -07 000000474 INF: FPGA: Recv ZSGSRD 35697
17-03-18 07:00:22.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.454 -07 000000501 INF: FPGA: Recv ZSGSRD 35695
17-03-18 07:00:22.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.464 -07 000000541 INF: FPGA: Recv ZSGSRD 35691
17-03-18 07:00:22.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.474 -07 000000541 INF: FPGA: Recv ZSGSRD 35697
17-03-18 07:00:22.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.484 -07 000000541 INF: FPGA: Recv ZSGSRD 35704
17-03-18 07:00:22.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.494 -07 000000501 INF: FPGA: Recv ZSGSRD 35695
17-03-18 07:00:22.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.504 -07 000000541 INF: FPGA: Recv ZSGSRD 35704
17-03-18 07:00:22.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.514 -07 000000474 INF: FPGA: Recv ZSGSRD 35697
17-03-18 07:00:22.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:22.524 -07 000000437 INF: FPGA: Recv ZPIEZORD 31534
17-03-18 07:00:22.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.534 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.655 V. Piezo Error = -9.2 V.
17-03-18 07:00:22.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35697 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35697 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35691 (-168.7 uncal um), Max = 35704 (-168.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:00:22.534 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35697, posNoise = 7, negNoise = 6
17-03-18 07:00:22.534 -07 000000610 INF: Z Motor: After move to -0.169645, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:22.534 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 101 ms (allowed 150 ms), total time = 1559 ms
17-03-18 07:00:22.534 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:22.584 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 07:00:22.584 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:22.584 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.169648452835576. ----------
17-03-18 07:00:22.584 -07 000000610 INF: Cycle	156	Tile	9	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:22.584 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36882, sync = True, waitForSettling = True)
17-03-18 07:00:22.584 -07 000000610 INF: Z Motor: Moving to -0.168835 mm, started at -0.169648 mm, distance = 0.81 um
17-03-18 07:00:22.584 -07 000000610 INF: FPGA: Xmit ZDACW 36882\n [Z Motor]
17-03-18 07:00:22.584 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 07:00:22.594 -07 000000610 INF: FPGA: 'ZDACW 36882' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:00:22.594 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:22.594 -07 000000585 INF: FPGA: Recv ZDACR 36882
17-03-18 07:00:22.604 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.604 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:22.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.754 -07 000000606 INF: FPGA: Recv ZSGSRD 35570
17-03-18 07:00:22.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:22.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.764 -07 000000474 INF: FPGA: Recv ZSGSRD 35574
17-03-18 07:00:22.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.774 -07 000000606 INF: FPGA: Recv ZSGSRD 35570
17-03-18 07:00:22.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.784 -07 000000474 INF: FPGA: Recv ZSGSRD 35569
17-03-18 07:00:22.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.794 -07 000000606 INF: FPGA: Recv ZSGSRD 35571
17-03-18 07:00:22.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.804 -07 000000585 INF: FPGA: Recv ZSGSRD 35573
17-03-18 07:00:22.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.814 -07 000000606 INF: FPGA: Recv ZSGSRD 35577
17-03-18 07:00:22.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.824 -07 000000474 INF: FPGA: Recv ZSGSRD 35571
17-03-18 07:00:22.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.834 -07 000000501 INF: FPGA: Recv ZSGSRD 35573
17-03-18 07:00:22.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:22.844 -07 000000474 INF: FPGA: Recv ZSGSRD 35572
17-03-18 07:00:22.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:22.854 -07 000000585 INF: FPGA: Recv ZPIEZORD 31367
17-03-18 07:00:22.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:22.864 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.3 V.
17-03-18 07:00:22.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35572 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35572 (-168.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35569 (-168.0 uncal um), Max = 35577 (-168.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 07:00:22.864 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35572, posNoise = 5, negNoise = 3
17-03-18 07:00:22.864 -07 000000610 INF: Z Motor: After move to -0.168835, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:22.864 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:00:22.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:22.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:22.864 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:22.864 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:22.864 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:22.864 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:22.864 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:22.864 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:22.864 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:22.864 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:22.864 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:22.864 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:22.874 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:00:22.874 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:22.874 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:00:22.874 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:22.884 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 07:00:22.884 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:00:22.884 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:00:22.884 -07 000000585 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:00:22.884 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37059 150\n [Camera]
17-03-18 07:00:23.084 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:23.554 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:23.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:23.554 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:23.554 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:23.554 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) start.
17-03-18 07:00:23.554 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:23.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:23.554 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:23.684 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:23.684 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 07:00:23.754 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37059 857
17-03-18 07:00:23.894 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:23.934 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 07:00:23.934 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 07:00:23.934 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:23.934 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:23.934 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:00:24.054 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 07:00:24.054 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 07:00:24.054 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:24.064 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:24.064 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-18 07:00:24.124 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:24.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:24.124 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:24.124 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:24.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:24.124 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:24.134 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:24.134 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:24.134 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 07:00:24.134 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2571421344, 0x0, 391868352) start.
17-03-18 07:00:24.314 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-18 07:00:24.314 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:24.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37059 150' command took 2 ms to send, 1427 ms to get response, and 1433 ms overall
17-03-18 07:00:24.314 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169732
17-03-18 07:00:24.314 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16973 mm
17-03-18 07:00:24.314 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:24.324 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 07:00:24.324 -07 000000585 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 07:00:24.324 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 37078, sync = True, waitForSettling = False)
17-03-18 07:00:24.324 -07 000000625 INF: Z Motor: Moving to -0.169732 mm, started at -0.168845 mm, distance = -0.89 um
17-03-18 07:00:24.324 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:24.324 -07 000000437 INF: FPGA: Recv YRDPOS 136270
17-03-18 07:00:24.334 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:00:24.334 -07 000000585 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:24.334 -07 000000585 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:24.334 -07 000000585 INF: Y Motor: Moving 1351 steps-31
17-03-18 07:00:24.334 -07 000000625 INF: FPGA: Xmit ZDACW 37078\n [Z Motor]
17-03-18 07:00:24.334 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 07:00:24.344 -07 000000625 INF: FPGA: 'ZDACW 37078' command took 3 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 07:00:24.344 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:24.344 -07 000000012 INF: FPGA: Recv ZDACR 37078
17-03-18 07:00:24.354 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:24.354 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:24.354 -07 000000625 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 07:00:24.514 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 07:00:24.514 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 07:00:24.514 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:24.514 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2571421344, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 07:00:24.514 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 07:00:24.514 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:24.514 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:24.514 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:24.514 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 07:00:24.524 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 07:00:24.724 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 07:00:24.724 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 07:00:24.784 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:24.784 -07 000000437 INF: FPGA: Recv YRDPOS 137975
17-03-18 07:00:24.794 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:00:24.794 -07 000000585 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:24.794 -07 000000585 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 07:00:24.794 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.138 mm/sec
17-03-18 07:00:25.744 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:25.744 -07 000000501 INF: FPGA: Recv YRDPOS 137976
17-03-18 07:00:25.754 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:25.754 -07 000000585 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:25.784 -07 000000585 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:25.784 -07 000000585 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:00:25.784 -07 000000585 INF: Y Motor: Moved to 67.3711 after 1460 ms (table move)
17-03-18 07:00:25.784 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169732 mm (DAC = 37078)
17-03-18 07:00:25.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:25.794 -07 000000474 INF: FPGA: Recv ZSGSRD 35713
17-03-18 07:00:25.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:00:25.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:25.794 -07 000000474 INF: FPGA: Recv ZSGSRD 35713
17-03-18 07:00:25.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:25.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:25.804 -07 000000474 INF: FPGA: Recv ZSGSRD 35711
17-03-18 07:00:25.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:25.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:25.814 -07 000000561 INF: FPGA: Recv ZSGSRD 35705
17-03-18 07:00:25.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:25.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:25.824 -07 000000561 INF: FPGA: Recv ZSGSRD 35706
17-03-18 07:00:25.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:25.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:25.834 -07 000000561 INF: FPGA: Recv ZSGSRD 35713
17-03-18 07:00:25.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:25.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:25.844 -07 000000561 INF: FPGA: Recv ZSGSRD 35705
17-03-18 07:00:25.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:25.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:25.854 -07 000000561 INF: FPGA: Recv ZSGSRD 35716
17-03-18 07:00:25.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:25.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:25.864 -07 000000474 INF: FPGA: Recv ZSGSRD 35710
17-03-18 07:00:25.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:25.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:25.874 -07 000000474 INF: FPGA: Recv ZSGSRD 35717
17-03-18 07:00:25.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:25.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:25.884 -07 000000474 INF: FPGA: Recv ZPIEZORD 31566
17-03-18 07:00:25.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:25.894 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -9.1 V.
17-03-18 07:00:25.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35711 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35712 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35705 (-168.8 uncal um), Max = 35717 (-168.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:00:25.894 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35711, posNoise = 6, negNoise = 6
17-03-18 07:00:25.894 -07 000000610 INF: Z Motor: After move to -0.169732, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:25.894 -07 000000610 INF: Z Motor: Settle wait time = 1464 ms, measure time = 103 ms (allowed 150 ms), total time = 1567 ms
17-03-18 07:00:25.894 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:25.944 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 07:00:25.944 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:25.944 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.169738391805561. ----------
17-03-18 07:00:25.944 -07 000000610 INF: Cycle	156	Tile	10	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:25.944 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36901, sync = True, waitForSettling = True)
17-03-18 07:00:25.944 -07 000000610 INF: Z Motor: Moving to -0.168922 mm, started at -0.169738 mm, distance = 0.82 um
17-03-18 07:00:25.944 -07 000000610 INF: FPGA: Xmit ZDACW 36901\n [Z Motor]
17-03-18 07:00:25.954 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:00:25.954 -07 000000610 INF: FPGA: 'ZDACW 36901' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:00:25.954 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:25.954 -07 000000474 INF: FPGA: Recv ZDACR 36901
17-03-18 07:00:25.964 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:25.964 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:26.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:26.114 -07 000000474 INF: FPGA: Recv ZSGSRD 35589
17-03-18 07:00:26.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:26.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:26.124 -07 000000474 INF: FPGA: Recv ZSGSRD 35589
17-03-18 07:00:26.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:26.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:26.134 -07 000000561 INF: FPGA: Recv ZSGSRD 35579
17-03-18 07:00:26.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:26.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:26.144 -07 000000561 INF: FPGA: Recv ZSGSRD 35580
17-03-18 07:00:26.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:26.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:26.154 -07 000000474 INF: FPGA: Recv ZSGSRD 35589
17-03-18 07:00:26.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:26.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:26.164 -07 000000474 INF: FPGA: Recv ZSGSRD 35587
17-03-18 07:00:26.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:26.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:26.174 -07 000000474 INF: FPGA: Recv ZSGSRD 35586
17-03-18 07:00:26.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:26.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:26.184 -07 000000474 INF: FPGA: Recv ZSGSRD 35591
17-03-18 07:00:26.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:26.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:26.194 -07 000000561 INF: FPGA: Recv ZSGSRD 35578
17-03-18 07:00:26.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:26.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:26.214 -07 000000561 INF: FPGA: Recv ZSGSRD 35587
17-03-18 07:00:26.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:26.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:26.224 -07 000000581 INF: FPGA: Recv ZPIEZORD 31415
17-03-18 07:00:26.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:26.234 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -9.2 V.
17-03-18 07:00:26.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35586 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35587 (-168.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35578 (-168.0 uncal um), Max = 35591 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:00:26.234 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35586, posNoise = 5, negNoise = 8
17-03-18 07:00:26.234 -07 000000610 INF: Z Motor: After move to -0.168922, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:26.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-18 07:00:26.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:26.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:26.234 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:26.234 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:26.234 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:26.234 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:26.234 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:26.234 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:26.234 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:26.234 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:26.234 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:26.234 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:26.234 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 07:00:26.234 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:26.244 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:00:26.244 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:26.254 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:00:26.254 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:00:26.254 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:00:26.254 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:00:26.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37078 150\n [Camera]
17-03-18 07:00:26.454 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:26.524 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.020806,
17-03-18 07:00:26.914 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:00:26.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:00:26.934 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:26.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:26.934 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:26.934 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:26.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:26.934 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:26.934 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:26.934 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) start.
17-03-18 07:00:26.934 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:26.934 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 07:00:27.124 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37078 857
17-03-18 07:00:27.274 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:27.304 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 07:00:27.304 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 07:00:27.304 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:27.304 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 07:00:27.314 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 07:00:27.314 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:27.314 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:27.314 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:27.314 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 07:00:27.324 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 07:00:27.504 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:27.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:27.504 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:27.504 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:27.504 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:27.504 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 07:00:27.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:27.504 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:27.504 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:27.504 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 07:00:27.694 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:00:27.694 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:27.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37078 150' command took 2 ms to send, 1422 ms to get response, and 1433 ms overall
17-03-18 07:00:27.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 07:00:27.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.16893536528784. ------
17-03-18 07:00:27.694 -07 000000474 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:00:27.694 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17513 mm
17-03-18 07:00:27.694 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:27.704 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 07:00:27.704 -07 000000461 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 07:00:27.704 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:27.704 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:00:27.704 -07 000000474 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:00:27.704 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38257, sync = True, waitForSettling = False)
17-03-18 07:00:27.704 -07 000000480 INF: Z Motor: Moving to -0.175129 mm, started at -0.168935 mm, distance = -6.19 um
17-03-18 07:00:27.704 -07 000000012 INF: FPGA: Recv YRDPOS 137976
17-03-18 07:00:27.714 -07 000000474 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:00:27.714 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:27.714 -07 000000461 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:27.714 -07 000000461 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:27.714 -07 000000461 INF: Y Motor: Moving 1346 steps-25
17-03-18 07:00:27.724 -07 000000480 INF: FPGA: Xmit ZDACW 38257\n [Z Motor]
17-03-18 07:00:27.724 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 07:00:27.734 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:27.734 -07 000000480 INF: FPGA: 'ZDACW 38257' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 07:00:27.744 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:27.744 -07 000000561 INF: FPGA: Recv ZDACR 38257
17-03-18 07:00:27.754 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:27.754 -07 000000480 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 07:00:27.884 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 07:00:27.884 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 07:00:27.884 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:27.894 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 07:00:27.894 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 07:00:27.894 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:27.894 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:27.894 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:27.894 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 07:00:27.904 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 07:00:27.914 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:00:27.914 -07 000000474 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 07:00:28.104 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 07:00:28.104 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 07:00:28.164 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:28.164 -07 000000576 INF: FPGA: Recv YRDPOS 139681
17-03-18 07:00:28.174 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:00:28.174 -07 000000461 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:28.174 -07 000000461 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 07:00:28.174 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.842 mm, average velocity = 2.125 mm/sec
17-03-18 07:00:29.124 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:29.124 -07 000000437 INF: FPGA: Recv YRDPOS 139681
17-03-18 07:00:29.134 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:29.134 -07 000000461 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:29.164 -07 000000461 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:29.164 -07 000000461 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:29.164 -07 000000461 INF: Y Motor: Moved to 68.2036 after 1464 ms (table move)
17-03-18 07:00:29.164 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175129 mm (DAC = 38257)
17-03-18 07:00:29.164 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:30.054 -07 000000625 INF: FPGA: Recv ZSGSRD 36545
17-03-18 07:00:30.054 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 880 ms to get response, and 882 ms overall
17-03-18 07:00:30.054 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:30.054 -07 000000606 INF: FPGA: Recv ZSGSRD 36563
17-03-18 07:00:30.064 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:30.064 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:30.064 -07 000000437 INF: FPGA: Recv ZSGSRD 36551
17-03-18 07:00:30.074 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:30.074 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:30.074 -07 000000625 INF: FPGA: Recv ZSGSRD 36549
17-03-18 07:00:30.084 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:30.084 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:30.084 -07 000000585 INF: FPGA: Recv ZSGSRD 36553
17-03-18 07:00:30.094 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:30.094 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:30.094 -07 000000625 INF: FPGA: Recv ZSGSRD 36551
17-03-18 07:00:30.104 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:30.104 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:30.104 -07 000000585 INF: FPGA: Recv ZSGSRD 36557
17-03-18 07:00:30.114 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:30.114 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:30.114 -07 000000625 INF: FPGA: Recv ZSGSRD 36550
17-03-18 07:00:30.124 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:30.124 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:30.124 -07 000000576 INF: FPGA: Recv ZSGSRD 36553
17-03-18 07:00:30.134 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:30.134 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:30.134 -07 000000474 INF: FPGA: Recv ZSGSRD 36553
17-03-18 07:00:30.144 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:30.144 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:30.144 -07 000000625 INF: FPGA: Recv ZPIEZORD 32668
17-03-18 07:00:30.154 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:30.154 -07 000000581 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.838 V. Piezo Error = -8.6 V.
17-03-18 07:00:30.154 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36552 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36552 (-174.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36545 (-174.2 uncal um), Max = 36563 (-174.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:00:30.154 -07 000000581 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36552, posNoise = 11, negNoise = 7
17-03-18 07:00:30.154 -07 000000581 INF: Z Motor: After move to -0.175129, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:30.154 -07 000000581 INF: Z Motor: Settle wait time = 1466 ms, measure time = 982 ms (allowed 150 ms), total time = 2448 ms
17-03-18 07:00:30.154 -07 000000581 INF: Z Motor: Warning: Actual position measuring time = 982 ms, longer than max expected time of 150 ms
17-03-18 07:00:30.154 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2453 ms
17-03-18 07:00:30.154 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:30.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:30.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:30.154 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:30.164 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:30.164 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:00:30.164 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:30.164 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:00:30.164 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:00:30.164 -07 000000585 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:00:30.164 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:00:30.174 -07 000000585 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 07:00:30.174 -07 000000585 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 07:00:30.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:00:30.214 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:00:30.514 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:00:30.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:00:30.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:00:30.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-18 07:00:30.554 -07 000000625 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:00:30.554 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 07:00:30.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 07:00:30.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 07:00:30.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:30.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 07:00:30.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 07:00:30.654 -07 000000606 INF: Autofocus start
17-03-18 07:00:30.654 -07 000000606 INF: MeasureProfile start
17-03-18 07:00:30.654 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:00:30.654 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:00:30.664 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:00:30.664 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:00:30.664 -07 000000606 INF: MeasureProfile done
17-03-18 07:00:30.664 -07 000000606 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 07:00:30.664 -07 000000606 INF: Autofocus finished
17-03-18 07:00:30.864 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:00:30.864 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:00:30.864 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.175141154216781. ----------
17-03-18 07:00:30.874 -07 000000610 INF: Cycle	156	Tile	11	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:30.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36737, sync = True, waitForSettling = True)
17-03-18 07:00:30.874 -07 000000610 INF: Z Motor: Moving to -0.168171 mm, started at -0.175141 mm, distance = 6.97 um
17-03-18 07:00:30.874 -07 000000610 INF: FPGA: Xmit ZDACW 36737\n [Z Motor]
17-03-18 07:00:30.874 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 07:00:30.884 -07 000000610 INF: FPGA: 'ZDACW 36737' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:00:30.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:30.884 -07 000000606 INF: FPGA: Recv ZDACR 36737
17-03-18 07:00:30.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:30.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:31.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:31.044 -07 000000625 INF: FPGA: Recv ZSGSRD 35466
17-03-18 07:00:31.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:31.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:31.054 -07 000000576 INF: FPGA: Recv ZSGSRD 35472
17-03-18 07:00:31.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:31.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:31.064 -07 000000581 INF: FPGA: Recv ZSGSRD 35466
17-03-18 07:00:31.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:31.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:31.074 -07 000000576 INF: FPGA: Recv ZSGSRD 35469
17-03-18 07:00:31.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:31.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:31.084 -07 000000437 INF: FPGA: Recv ZSGSRD 35468
17-03-18 07:00:31.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:31.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:31.094 -07 000000585 INF: FPGA: Recv ZSGSRD 35475
17-03-18 07:00:31.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:31.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:31.104 -07 000000606 INF: FPGA: Recv ZSGSRD 35470
17-03-18 07:00:31.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:31.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:31.114 -07 000000585 INF: FPGA: Recv ZSGSRD 35468
17-03-18 07:00:31.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:31.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:31.124 -07 000000576 INF: FPGA: Recv ZSGSRD 35467
17-03-18 07:00:31.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:31.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:31.134 -07 000000437 INF: FPGA: Recv ZSGSRD 35464
17-03-18 07:00:31.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:31.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:31.144 -07 000000581 INF: FPGA: Recv ZPIEZORD 31265
17-03-18 07:00:31.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:31.154 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.3 V.
17-03-18 07:00:31.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35468 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35468 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35464 (-167.3 uncal um), Max = 35475 (-167.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:00:31.154 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35468, posNoise = 7, negNoise = 4
17-03-18 07:00:31.154 -07 000000610 INF: Z Motor: After move to -0.168171, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:31.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 07:00:31.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:31.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:31.154 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:31.154 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:31.154 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:31.154 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:31.154 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:31.154 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:31.154 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:31.154 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:31.154 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:31.154 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:31.164 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:00:31.164 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:31.164 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:00:31.164 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:31.174 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:00:31.174 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:00:31.174 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 07:00:31.174 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 07:00:31.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36913 150\n [Camera]
17-03-18 07:00:31.374 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:31.844 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 665
17-03-18 07:00:31.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 665
17-03-18 07:00:31.844 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:31.844 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:31.854 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 07:00:31.854 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 665
17-03-18 07:00:31.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 665
17-03-18 07:00:31.854 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:31.854 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:31.854 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:00:31.884 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.99219,
17-03-18 07:00:31.914 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:00:31.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:00:32.044 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36913 857
17-03-18 07:00:32.184 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:32.244 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 07:00:32.254 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 07:00:32.254 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:32.254 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 07:00:32.254 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 07:00:32.254 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:32.254 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:32.254 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 07:00:32.254 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:32.264 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 07:00:32.414 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:32.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:32.414 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:32.544 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:32.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:32.544 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:32.554 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:32.554 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 07:00:32.554 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:32.554 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:00:32.604 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:00:32.604 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:32.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36913 150' command took 2 ms to send, 1427 ms to get response, and 1434 ms overall
17-03-18 07:00:32.614 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.168823
17-03-18 07:00:32.614 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16882 mm
17-03-18 07:00:32.614 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:32.614 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 36879, sync = True, waitForSettling = False)
17-03-18 07:00:32.614 -07 000000501 INF: Z Motor: Moving to -0.168821 mm, started at -0.168177 mm, distance = -0.64 um
17-03-18 07:00:32.614 -07 000000501 INF: FPGA: Xmit ZDACW 36879\n [Z Motor]
17-03-18 07:00:32.614 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 07:00:32.614 -07 000000012 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 07:00:32.614 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 07:00:32.624 -07 000000501 INF: FPGA: 'ZDACW 36879' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:00:32.624 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:32.624 -07 000000585 INF: FPGA: Recv ZDACR 36879
17-03-18 07:00:32.634 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:32.634 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:32.634 -07 000000501 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-18 07:00:32.634 -07 000000625 INF: FPGA: Recv YRDPOS 139681
17-03-18 07:00:32.644 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 07:00:32.644 -07 000000012 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:32.644 -07 000000012 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:32.644 -07 000000012 INF: Y Motor: Moving 1342 steps-18
17-03-18 07:00:32.644 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:32.934 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 07:00:32.934 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 07:00:32.934 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:32.944 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:32.944 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 07:00:32.944 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 07:00:32.944 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:32.944 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 07:00:32.954 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:32.954 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-18 07:00:33.024 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-18 07:00:33.024 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 381 ms overall
17-03-18 07:00:33.074 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:33.074 -07 000000480 INF: FPGA: Recv YRDPOS 141365
17-03-18 07:00:33.084 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:00:33.084 -07 000000012 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:33.084 -07 000000012 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 07:00:33.084 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.839 mm, average velocity = 2.202 mm/sec
17-03-18 07:00:34.034 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:34.034 -07 000000606 INF: FPGA: Recv YRDPOS 141365
17-03-18 07:00:34.044 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.044 -07 000000012 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:34.074 -07 000000012 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:34.074 -07 000000012 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:34.074 -07 000000012 INF: Y Motor: Moved to 69.0259 after 1457 ms (table move)
17-03-18 07:00:34.074 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168821 mm (DAC = 36879)
17-03-18 07:00:34.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.074 -07 000000561 INF: FPGA: Recv ZSGSRD 35569
17-03-18 07:00:34.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:00:34.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.084 -07 000000576 INF: FPGA: Recv ZSGSRD 35578
17-03-18 07:00:34.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.094 -07 000000606 INF: FPGA: Recv ZSGSRD 35570
17-03-18 07:00:34.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.104 -07 000000437 INF: FPGA: Recv ZSGSRD 35572
17-03-18 07:00:34.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.114 -07 000000437 INF: FPGA: Recv ZSGSRD 35563
17-03-18 07:00:34.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.124 -07 000000625 INF: FPGA: Recv ZSGSRD 35566
17-03-18 07:00:34.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.134 -07 000000606 INF: FPGA: Recv ZSGSRD 35570
17-03-18 07:00:34.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:34.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.144 -07 000000625 INF: FPGA: Recv ZSGSRD 35567
17-03-18 07:00:34.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.154 -07 000000437 INF: FPGA: Recv ZSGSRD 35571
17-03-18 07:00:34.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.164 -07 000000625 INF: FPGA: Recv ZSGSRD 35575
17-03-18 07:00:34.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:34.174 -07 000000437 INF: FPGA: Recv ZPIEZORD 31410
17-03-18 07:00:34.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.184 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.2 V.
17-03-18 07:00:34.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35570 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35570 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35563 (-167.9 uncal um), Max = 35578 (-168.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:00:34.184 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35570, posNoise = 8, negNoise = 7
17-03-18 07:00:34.184 -07 000000610 INF: Z Motor: After move to -0.168821, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:34.184 -07 000000610 INF: Z Motor: Settle wait time = 1460 ms, measure time = 105 ms (allowed 150 ms), total time = 1565 ms
17-03-18 07:00:34.184 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:34.234 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 07:00:34.234 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:34.234 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.168832577893572. ----------
17-03-18 07:00:34.234 -07 000000610 INF: Cycle	156	Tile	12	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:34.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36703, sync = True, waitForSettling = True)
17-03-18 07:00:34.234 -07 000000610 INF: Z Motor: Moving to -0.168016 mm, started at -0.168833 mm, distance = 0.82 um
17-03-18 07:00:34.234 -07 000000610 INF: FPGA: Xmit ZDACW 36703\n [Z Motor]
17-03-18 07:00:34.234 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 07:00:34.244 -07 000000610 INF: FPGA: 'ZDACW 36703' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:00:34.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:34.244 -07 000000012 INF: FPGA: Recv ZDACR 36703
17-03-18 07:00:34.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:34.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.404 -07 000000501 INF: FPGA: Recv ZSGSRD 35447
17-03-18 07:00:34.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:34.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.414 -07 000000012 INF: FPGA: Recv ZSGSRD 35451
17-03-18 07:00:34.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.424 -07 000000541 INF: FPGA: Recv ZSGSRD 35437
17-03-18 07:00:34.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.434 -07 000000012 INF: FPGA: Recv ZSGSRD 35443
17-03-18 07:00:34.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.444 -07 000000541 INF: FPGA: Recv ZSGSRD 35441
17-03-18 07:00:34.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.454 -07 000000625 INF: FPGA: Recv ZSGSRD 35450
17-03-18 07:00:34.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.464 -07 000000012 INF: FPGA: Recv ZSGSRD 35450
17-03-18 07:00:34.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.474 -07 000000625 INF: FPGA: Recv ZSGSRD 35440
17-03-18 07:00:34.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.484 -07 000000480 INF: FPGA: Recv ZSGSRD 35452
17-03-18 07:00:34.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:34.494 -07 000000012 INF: FPGA: Recv ZSGSRD 35437
17-03-18 07:00:34.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:34.504 -07 000000501 INF: FPGA: Recv ZPIEZORD 31255
17-03-18 07:00:34.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:34.514 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.2 V.
17-03-18 07:00:34.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35445 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35445 (-167.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35437 (-167.1 uncal um), Max = 35452 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:00:34.514 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35445, posNoise = 7, negNoise = 8
17-03-18 07:00:34.514 -07 000000610 INF: Z Motor: After move to -0.168016, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:34.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 07:00:34.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:34.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:34.514 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:34.514 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:34.514 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:34.514 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:34.514 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:34.514 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:00:34.514 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:34.514 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:34.514 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:34.514 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:34.514 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:00:34.514 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:34.524 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:00:34.524 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:34.524 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:00:34.524 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 07:00:34.534 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 07:00:34.534 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:00:34.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36879 150\n [Camera]
17-03-18 07:00:34.734 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:35.204 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:35.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:35.204 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:35.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:35.214 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:35.214 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:35.214 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:35.214 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:00:35.214 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:35.214 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 07:00:35.394 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36879 857
17-03-18 07:00:35.544 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:35.594 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:00:35.594 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 07:00:35.594 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:35.594 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:00:35.594 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:00:35.594 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:35.594 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:00:35.594 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:00:35.594 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:00:35.604 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 07:00:35.774 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:35.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:35.774 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:35.884 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:35.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:35.894 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:35.894 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:35.894 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:00:35.894 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:35.894 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 07:00:35.964 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:00:35.964 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:35.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36879 150' command took 2 ms to send, 1428 ms to get response, and 1434 ms overall
17-03-18 07:00:35.964 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168238
17-03-18 07:00:35.974 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16824 mm
17-03-18 07:00:35.974 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:35.974 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 07:00:35.974 -07 000000625 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 07:00:35.974 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:35.974 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 36752, sync = True, waitForSettling = False)
17-03-18 07:00:35.974 -07 000000501 INF: Z Motor: Moving to -0.168240 mm, started at -0.168030 mm, distance = -0.21 um
17-03-18 07:00:35.974 -07 000000480 INF: FPGA: Recv YRDPOS 141365
17-03-18 07:00:35.984 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:00:35.984 -07 000000625 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:35.984 -07 000000625 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:35.984 -07 000000625 INF: Y Motor: Moving 1355 steps-34
17-03-18 07:00:35.984 -07 000000501 INF: FPGA: Xmit ZDACW 36752\n [Z Motor]
17-03-18 07:00:35.984 -07 000000541 INF: FPGA: Recv ZDACW
17-03-18 07:00:35.994 -07 000000501 INF: FPGA: 'ZDACW 36752' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 07:00:35.994 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:36.004 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:36.004 -07 000000480 INF: FPGA: Recv ZDACR 36752
17-03-18 07:00:36.014 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 07:00:36.014 -07 000000501 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 07:00:36.294 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 07:00:36.294 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 07:00:36.294 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:36.294 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 07:00:36.294 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 07:00:36.294 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:36.294 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:36.294 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 07:00:36.304 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:36.304 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 07:00:36.364 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 07:00:36.364 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 07:00:36.424 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:36.424 -07 000000501 INF: FPGA: Recv YRDPOS 143077
17-03-18 07:00:36.434 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:36.434 -07 000000625 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:36.434 -07 000000625 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 07:00:36.434 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.847 mm, average velocity = 2.188 mm/sec
17-03-18 07:00:36.914 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:00:36.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:00:37.244 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.009895,
17-03-18 07:00:37.384 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:37.384 -07 000000480 INF: FPGA: Recv YRDPOS 143077
17-03-18 07:00:37.394 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:37.394 -07 000000625 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:37.424 -07 000000625 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:37.424 -07 000000625 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:37.424 -07 000000625 INF: Y Motor: Moved to 69.8618 after 1449 ms (table move)
17-03-18 07:00:37.424 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168240 mm (DAC = 36752)
17-03-18 07:00:37.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.424 -07 000000541 INF: FPGA: Recv ZSGSRD 35486
17-03-18 07:00:37.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:00:37.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.434 -07 000000012 INF: FPGA: Recv ZSGSRD 35485
17-03-18 07:00:37.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.444 -07 000000541 INF: FPGA: Recv ZSGSRD 35479
17-03-18 07:00:37.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.454 -07 000000012 INF: FPGA: Recv ZSGSRD 35479
17-03-18 07:00:37.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.464 -07 000000501 INF: FPGA: Recv ZSGSRD 35477
17-03-18 07:00:37.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.474 -07 000000012 INF: FPGA: Recv ZSGSRD 35479
17-03-18 07:00:37.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:00:37.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.484 -07 000000480 INF: FPGA: Recv ZSGSRD 35480
17-03-18 07:00:37.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.494 -07 000000581 INF: FPGA: Recv ZSGSRD 35479
17-03-18 07:00:37.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.504 -07 000000611 INF: FPGA: Recv ZSGSRD 35487
17-03-18 07:00:37.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.514 -07 000000501 INF: FPGA: Recv ZSGSRD 35487
17-03-18 07:00:37.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:37.524 -07 000000625 INF: FPGA: Recv ZPIEZORD 31287
17-03-18 07:00:37.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.534 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.608 V. Piezo Error = -9.2 V.
17-03-18 07:00:37.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35482 (-167.4 uncal um), Error = 0.8 uncal um, Median = 35480 (-167.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35477 (-167.4 uncal um), Max = 35487 (-167.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:00:37.534 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35482, posNoise = 5, negNoise = 5
17-03-18 07:00:37.534 -07 000000610 INF: Z Motor: After move to -0.168240, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:37.534 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 106 ms (allowed 150 ms), total time = 1557 ms
17-03-18 07:00:37.534 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:37.584 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 07:00:37.584 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:37.584 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.168267247225097. ----------
17-03-18 07:00:37.584 -07 000000610 INF: Cycle	156	Tile	13	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:37.584 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36575, sync = True, waitForSettling = True)
17-03-18 07:00:37.584 -07 000000610 INF: Z Motor: Moving to -0.167430 mm, started at -0.168267 mm, distance = 0.84 um
17-03-18 07:00:37.584 -07 000000610 INF: FPGA: Xmit ZDACW 36575\n [Z Motor]
17-03-18 07:00:37.584 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 07:00:37.594 -07 000000610 INF: FPGA: 'ZDACW 36575' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:00:37.604 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:37.604 -07 000000012 INF: FPGA: Recv ZDACR 36575
17-03-18 07:00:37.614 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:37.614 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:37.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.764 -07 000000581 INF: FPGA: Recv ZSGSRD 35353
17-03-18 07:00:37.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.774 -07 000000625 INF: FPGA: Recv ZSGSRD 35348
17-03-18 07:00:37.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.784 -07 000000501 INF: FPGA: Recv ZSGSRD 35348
17-03-18 07:00:37.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.794 -07 000000480 INF: FPGA: Recv ZSGSRD 35354
17-03-18 07:00:37.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.804 -07 000000501 INF: FPGA: Recv ZSGSRD 35352
17-03-18 07:00:37.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.814 -07 000000480 INF: FPGA: Recv ZSGSRD 35356
17-03-18 07:00:37.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.824 -07 000000012 INF: FPGA: Recv ZSGSRD 35349
17-03-18 07:00:37.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.834 -07 000000480 INF: FPGA: Recv ZSGSRD 35358
17-03-18 07:00:37.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.844 -07 000000012 INF: FPGA: Recv ZSGSRD 35351
17-03-18 07:00:37.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:37.854 -07 000000012 INF: FPGA: Recv ZSGSRD 35351
17-03-18 07:00:37.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:37.864 -07 000000480 INF: FPGA: Recv ZPIEZORD 31088
17-03-18 07:00:37.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:37.874 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.581 V. Piezo Error = -9.4 V.
17-03-18 07:00:37.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35352 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35352 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35348 (-166.5 uncal um), Max = 35358 (-166.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:00:37.874 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35352, posNoise = 6, negNoise = 4
17-03-18 07:00:37.874 -07 000000610 INF: Z Motor: After move to -0.167430, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:37.874 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-18 07:00:37.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:37.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:37.874 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:37.874 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:37.874 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:37.874 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:37.874 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:37.874 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:37.874 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:37.874 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:37.874 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:37.874 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:37.874 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:00:37.884 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:37.884 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 07:00:37.884 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:37.894 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:00:37.894 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:00:37.894 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:00:37.894 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:00:37.894 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36752 150\n [Camera]
17-03-18 07:00:38.094 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:38.574 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:38.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:38.574 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:38.574 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:38.574 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 07:00:38.574 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:38.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:38.574 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:38.574 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:38.574 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:00:38.764 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36752 857
17-03-18 07:00:38.914 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:38.964 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 07:00:38.964 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:00:38.964 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:38.964 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 07:00:38.964 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 07:00:38.964 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:38.964 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:38.964 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:38.964 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 07:00:38.974 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 07:00:39.144 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:39.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:39.144 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:39.144 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:39.144 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) start.
17-03-18 07:00:39.144 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:39.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:39.144 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:39.144 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:39.144 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) start.
17-03-18 07:00:39.334 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:00:39.334 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:39.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36752 150' command took 4 ms to send, 1422 ms to get response, and 1433 ms overall
17-03-18 07:00:39.334 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.167770
17-03-18 07:00:39.334 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16777 mm
17-03-18 07:00:39.334 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:39.334 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 07:00:39.334 -07 000000625 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-18 07:00:39.334 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:39.344 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 36649, sync = True, waitForSettling = False)
17-03-18 07:00:39.344 -07 000000541 INF: Z Motor: Moving to -0.167768 mm, started at -0.167432 mm, distance = -0.34 um
17-03-18 07:00:39.344 -07 000000541 INF: FPGA: Xmit ZDACW 36649\n [Z Motor]
17-03-18 07:00:39.344 -07 000000611 INF: FPGA: Recv YRDPOS 143078
17-03-18 07:00:39.344 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:00:39.344 -07 000000625 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:39.344 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 07:00:39.344 -07 000000625 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:39.344 -07 000000625 INF: Y Motor: Moving 1344 steps-22
17-03-18 07:00:39.354 -07 000000541 INF: FPGA: 'ZDACW 36649' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:39.354 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:39.364 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:39.364 -07 000000012 INF: FPGA: Recv ZDACR 36649
17-03-18 07:00:39.374 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:39.374 -07 000000541 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 07:00:39.524 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:00:39.524 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:00:39.524 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:39.524 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:00:39.524 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 07:00:39.524 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:39.524 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:39.524 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:00:39.524 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:39.534 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 07:00:39.724 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 07:00:39.724 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 382 ms overall
17-03-18 07:00:39.784 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:39.784 -07 000000437 INF: FPGA: Recv YRDPOS 144767
17-03-18 07:00:39.794 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:00:39.794 -07 000000625 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:39.794 -07 000000625 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 07:00:39.794 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.841 mm, average velocity = 2.195 mm/sec
17-03-18 07:00:40.744 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:40.744 -07 000000012 INF: FPGA: Recv YRDPOS 144767
17-03-18 07:00:40.754 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:40.754 -07 000000625 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:40.784 -07 000000625 INF: Y Motor: After move to 70.702606, error = -0.015594, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:40.784 -07 000000625 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:40.784 -07 000000625 INF: Y Motor: Moved to 70.6870 after 1446 ms (table move)
17-03-18 07:00:40.784 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167768 mm (DAC = 36649)
17-03-18 07:00:40.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:40.794 -07 000000012 INF: FPGA: Recv ZSGSRD 35410
17-03-18 07:00:40.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:00:40.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:40.794 -07 000000611 INF: FPGA: Recv ZSGSRD 35408
17-03-18 07:00:40.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:00:40.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:40.804 -07 000000606 INF: FPGA: Recv ZSGSRD 35408
17-03-18 07:00:40.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:40.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:40.814 -07 000000541 INF: FPGA: Recv ZSGSRD 35399
17-03-18 07:00:40.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:40.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:40.824 -07 000000012 INF: FPGA: Recv ZSGSRD 35405
17-03-18 07:00:40.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:40.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:40.834 -07 000000606 INF: FPGA: Recv ZSGSRD 35417
17-03-18 07:00:40.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:40.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:40.844 -07 000000012 INF: FPGA: Recv ZSGSRD 35405
17-03-18 07:00:40.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:40.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:40.854 -07 000000606 INF: FPGA: Recv ZSGSRD 35411
17-03-18 07:00:40.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:40.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:40.864 -07 000000012 INF: FPGA: Recv ZSGSRD 35403
17-03-18 07:00:40.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:40.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:40.874 -07 000000606 INF: FPGA: Recv ZSGSRD 35404
17-03-18 07:00:40.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:40.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:40.884 -07 000000625 INF: FPGA: Recv ZPIEZORD 31203
17-03-18 07:00:40.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:40.894 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.3 V.
17-03-18 07:00:40.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35407 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35406 (-166.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35399 (-166.9 uncal um), Max = 35417 (-167.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:00:40.894 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35407, posNoise = 10, negNoise = 8
17-03-18 07:00:40.894 -07 000000610 INF: Z Motor: After move to -0.167768, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:40.894 -07 000000610 INF: Z Motor: Settle wait time = 1447 ms, measure time = 103 ms (allowed 150 ms), total time = 1550 ms
17-03-18 07:00:40.894 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:40.944 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 07:00:40.944 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:40.944 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68701171875, Z-position -0.167785431314465. ----------
17-03-18 07:00:40.944 -07 000000610 INF: Cycle	156	Tile	14	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:40.944 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36473, sync = True, waitForSettling = True)
17-03-18 07:00:40.944 -07 000000610 INF: Z Motor: Moving to -0.166963 mm, started at -0.167785 mm, distance = 0.82 um
17-03-18 07:00:40.944 -07 000000610 INF: FPGA: Xmit ZDACW 36473\n [Z Motor]
17-03-18 07:00:40.944 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 07:00:40.954 -07 000000610 INF: FPGA: 'ZDACW 36473' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:00:40.954 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:40.954 -07 000000606 INF: FPGA: Recv ZDACR 36473
17-03-18 07:00:40.964 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:40.964 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:41.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:41.114 -07 000000012 INF: FPGA: Recv ZSGSRD 35287
17-03-18 07:00:41.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:41.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:41.124 -07 000000611 INF: FPGA: Recv ZSGSRD 35276
17-03-18 07:00:41.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:41.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:41.134 -07 000000541 INF: FPGA: Recv ZSGSRD 35280
17-03-18 07:00:41.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:41.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:41.144 -07 000000606 INF: FPGA: Recv ZSGSRD 35283
17-03-18 07:00:41.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:41.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:41.154 -07 000000012 INF: FPGA: Recv ZSGSRD 35279
17-03-18 07:00:41.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:41.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:41.164 -07 000000606 INF: FPGA: Recv ZSGSRD 35285
17-03-18 07:00:41.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:41.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:41.174 -07 000000611 INF: FPGA: Recv ZSGSRD 35276
17-03-18 07:00:41.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:41.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:41.184 -07 000000437 INF: FPGA: Recv ZSGSRD 35280
17-03-18 07:00:41.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:41.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:41.194 -07 000000611 INF: FPGA: Recv ZSGSRD 35283
17-03-18 07:00:41.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:41.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:41.204 -07 000000606 INF: FPGA: Recv ZSGSRD 35276
17-03-18 07:00:41.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:41.214 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:41.214 -07 000000611 INF: FPGA: Recv ZPIEZORD 31043
17-03-18 07:00:41.224 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:41.224 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.565 V. Piezo Error = -9.3 V.
17-03-18 07:00:41.224 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35280 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35280 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35276 (-166.1 uncal um), Max = 35287 (-166.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:00:41.224 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35280, posNoise = 7, negNoise = 4
17-03-18 07:00:41.224 -07 000000610 INF: Z Motor: After move to -0.166963, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:41.224 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:00:41.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:41.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:41.224 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:41.224 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:41.224 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:41.224 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:41.224 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:41.224 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:41.224 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 07:00:41.224 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:41.224 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 07:00:41.224 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:41.234 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:00:41.234 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:41.234 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:00:41.234 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:41.244 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:00:41.244 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:00:41.244 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:00:41.244 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 07:00:41.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36649 150\n [Camera]
17-03-18 07:00:41.444 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 07:00:41.914 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:00:41.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:00:41.924 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:41.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:41.924 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:41.924 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:41.924 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 07:00:41.924 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:41.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:41.924 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:42.044 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:42.044 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 07:00:42.114 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36649 857
17-03-18 07:00:42.264 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:42.304 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 07:00:42.304 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:00:42.304 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:42.314 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:42.314 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 07:00:42.424 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 07:00:42.424 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 07:00:42.424 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:42.424 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:42.434 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-18 07:00:42.494 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:42.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:42.494 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:42.494 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:42.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:42.494 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:42.494 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:42.494 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 07:00:42.494 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:42.494 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 07:00:42.604 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.015368,
17-03-18 07:00:42.684 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-18 07:00:42.684 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:42.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36649 150' command took 2 ms to send, 1423 ms to get response, and 1433 ms overall
17-03-18 07:00:42.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 07:00:42.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68701171875, Z-Position -0.166969556372462. ------
17-03-18 07:00:42.694 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17382 mm
17-03-18 07:00:42.694 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:42.694 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:00:42.694 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 07:00:42.694 -07 000000606 INF: Y Motor: Moving to 71.5326 mm, started at 70.6870 mm, delta = 0.8456 mm
17-03-18 07:00:42.694 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:00:42.694 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37970, sync = True, waitForSettling = False)
17-03-18 07:00:42.694 -07 000000576 INF: Z Motor: Moving to -0.173816 mm, started at -0.166970 mm, distance = -6.85 um
17-03-18 07:00:42.704 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:42.704 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:42.704 -07 000000581 INF: FPGA: Recv YRDPOS 144767
17-03-18 07:00:42.714 -07 000000576 INF: FPGA: Xmit ZDACW 37970\n [Z Motor]
17-03-18 07:00:42.714 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 07:00:42.714 -07 000000606 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:42.714 -07 000000606 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:42.714 -07 000000606 INF: Y Motor: Moving 1353 steps-32
17-03-18 07:00:42.714 -07 000000541 INF: FPGA: Recv ZDACW
17-03-18 07:00:42.724 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:00:42.724 -07 000000576 INF: FPGA: 'ZDACW 37970' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 07:00:42.734 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:42.744 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:42.744 -07 000000611 INF: FPGA: Recv ZDACR 37970
17-03-18 07:00:42.754 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:00:42.754 -07 000000576 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 07:00:42.874 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 07:00:42.874 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 07:00:42.874 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:42.874 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:00:42.874 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 07:00:42.874 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:42.874 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:00:42.874 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 07:00:42.884 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:42.884 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 07:00:42.924 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:00:42.924 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 07:00:43.104 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-18 07:00:43.104 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:00:43.164 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:43.164 -07 000000541 INF: FPGA: Recv YRDPOS 146468
17-03-18 07:00:43.174 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:00:43.174 -07 000000606 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:43.174 -07 000000606 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 07:00:43.174 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-18 07:00:44.124 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:44.124 -07 000000541 INF: FPGA: Recv YRDPOS 146468
17-03-18 07:00:44.134 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:44.134 -07 000000606 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:44.164 -07 000000606 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:44.164 -07 000000606 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:44.164 -07 000000606 INF: Y Motor: Moved to 71.5176 after 1468 ms (table move)
17-03-18 07:00:44.164 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173816 mm (DAC = 37970)
17-03-18 07:00:44.164 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:44.164 -07 000000437 INF: FPGA: Recv ZSGSRD 36353
17-03-18 07:00:44.174 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:00:44.174 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:44.174 -07 000000606 INF: FPGA: Recv ZSGSRD 36348
17-03-18 07:00:44.184 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:44.184 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:44.184 -07 000000585 INF: FPGA: Recv ZSGSRD 36353
17-03-18 07:00:44.194 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:00:44.194 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:44.194 -07 000000606 INF: FPGA: Recv ZSGSRD 36347
17-03-18 07:00:44.204 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:44.204 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:44.204 -07 000000585 INF: FPGA: Recv ZSGSRD 36341
17-03-18 07:00:44.214 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:44.214 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:44.214 -07 000000437 INF: FPGA: Recv ZSGSRD 36345
17-03-18 07:00:44.224 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:44.224 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:44.224 -07 000000437 INF: FPGA: Recv ZSGSRD 36347
17-03-18 07:00:44.234 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:44.234 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:44.234 -07 000000581 INF: FPGA: Recv ZSGSRD 36347
17-03-18 07:00:44.244 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:44.244 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:44.244 -07 000000437 INF: FPGA: Recv ZSGSRD 36344
17-03-18 07:00:44.254 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:44.254 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:44.254 -07 000000012 INF: FPGA: Recv ZSGSRD 36342
17-03-18 07:00:44.264 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:44.264 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:44.264 -07 000000012 INF: FPGA: Recv ZPIEZORD 32442
17-03-18 07:00:44.274 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:44.274 -07 000000474 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.794 V. Piezo Error = -8.6 V.
17-03-18 07:00:44.274 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36347 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36347 (-172.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36341 (-172.9 uncal um), Max = 36353 (-173.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:00:44.274 -07 000000474 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36347, posNoise = 6, negNoise = 6
17-03-18 07:00:44.274 -07 000000474 INF: Z Motor: After move to -0.173816, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:44.274 -07 000000474 INF: Z Motor: Settle wait time = 1470 ms, measure time = 105 ms (allowed 150 ms), total time = 1575 ms
17-03-18 07:00:44.274 -07 000000474 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:44.324 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 07:00:44.324 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:44.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:44.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:44.324 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:44.324 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:44.324 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:00:44.324 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:44.334 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:00:44.334 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:00:44.334 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:00:44.334 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:00:44.344 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 07:00:44.344 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 07:00:44.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:00:44.394 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:00:44.694 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:00:44.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:00:44.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:00:44.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-18 07:00:44.734 -07 000000437 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:00:44.734 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 07:00:44.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 07:00:44.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 07:00:44.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:44.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:00:44.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 07:00:44.834 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:00:44.834 -07 000000576 INF: Autofocus start
17-03-18 07:00:44.834 -07 000000576 INF: MeasureProfile start
17-03-18 07:00:44.834 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:00:44.844 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:00:44.844 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:00:44.844 -07 000000576 INF: MeasureProfile done
17-03-18 07:00:44.844 -07 000000576 INF: X=48  Z correction [um]=0.1739867
17-03-18 07:00:44.844 -07 000000576 INF: Autofocus finished
17-03-18 07:00:45.044 -07 000000611 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:00:45.044 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:00:45.044 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.17382419072772. ----------
17-03-18 07:00:45.044 -07 000000610 INF: Cycle	156	Tile	15	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:45.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36521, sync = True, waitForSettling = True)
17-03-18 07:00:45.054 -07 000000610 INF: Z Motor: Moving to -0.167182 mm, started at -0.173824 mm, distance = 6.64 um
17-03-18 07:00:45.054 -07 000000610 INF: FPGA: Xmit ZDACW 36521\n [Z Motor]
17-03-18 07:00:45.054 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 07:00:45.064 -07 000000610 INF: FPGA: 'ZDACW 36521' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:00:45.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:45.064 -07 000000581 INF: FPGA: Recv ZDACR 36521
17-03-18 07:00:45.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:45.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:45.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:45.224 -07 000000561 INF: FPGA: Recv ZSGSRD 35312
17-03-18 07:00:45.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:45.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:45.234 -07 000000625 INF: FPGA: Recv ZSGSRD 35320
17-03-18 07:00:45.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:45.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:45.244 -07 000000437 INF: FPGA: Recv ZSGSRD 35311
17-03-18 07:00:45.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:45.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:45.254 -07 000000561 INF: FPGA: Recv ZSGSRD 35308
17-03-18 07:00:45.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:45.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:45.264 -07 000000625 INF: FPGA: Recv ZSGSRD 35313
17-03-18 07:00:45.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:45.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:45.274 -07 000000437 INF: FPGA: Recv ZSGSRD 35315
17-03-18 07:00:45.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:45.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:45.284 -07 000000581 INF: FPGA: Recv ZSGSRD 35320
17-03-18 07:00:45.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:45.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:45.294 -07 000000625 INF: FPGA: Recv ZSGSRD 35315
17-03-18 07:00:45.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:45.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:45.304 -07 000000437 INF: FPGA: Recv ZSGSRD 35316
17-03-18 07:00:45.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:45.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:45.314 -07 000000581 INF: FPGA: Recv ZSGSRD 35316
17-03-18 07:00:45.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:45.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:45.324 -07 000000561 INF: FPGA: Recv ZPIEZORD 31044
17-03-18 07:00:45.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:45.334 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.573 V. Piezo Error = -9.4 V.
17-03-18 07:00:45.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35315 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35315 (-166.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35308 (-166.3 uncal um), Max = 35320 (-166.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:00:45.334 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35315, posNoise = 5, negNoise = 7
17-03-18 07:00:45.334 -07 000000610 INF: Z Motor: After move to -0.167182, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:45.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 07:00:45.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:45.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:45.334 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:45.334 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:45.334 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:45.334 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:45.334 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:45.334 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:45.334 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 07:00:45.334 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:45.334 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:45.334 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:45.344 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:00:45.344 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:45.344 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:00:45.344 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:45.354 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:00:45.354 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:00:45.354 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 07:00:45.354 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:00:45.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36697 150\n [Camera]
17-03-18 07:00:45.554 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:46.024 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:46.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:46.024 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:46.024 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:46.024 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2571421344, 0x0, 391868352) start.
17-03-18 07:00:46.024 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:46.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:46.024 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:46.024 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:46.024 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2606843608, 0x0, 418435064) start.
17-03-18 07:00:46.214 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36697 857
17-03-18 07:00:46.364 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:46.404 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2606843608, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 07:00:46.404 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 07:00:46.404 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:46.404 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2571421344, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 07:00:46.404 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 07:00:46.404 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:46.414 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:46.414 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:46.414 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 07:00:46.414 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:00:46.594 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:46.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:46.594 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:46.714 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:46.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:46.714 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:46.714 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:46.714 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2642265872, 0x0, 391868352) start.
17-03-18 07:00:46.724 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:46.724 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:00:46.784 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-18 07:00:46.784 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:46.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36697 150' command took 2 ms to send, 1426 ms to get response, and 1433 ms overall
17-03-18 07:00:46.784 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167575
17-03-18 07:00:46.784 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16758 mm
17-03-18 07:00:46.784 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:46.794 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 36607, sync = True, waitForSettling = False)
17-03-18 07:00:46.794 -07 000000437 INF: Z Motor: Moving to -0.167576 mm, started at -0.167194 mm, distance = -0.38 um
17-03-18 07:00:46.794 -07 000000437 INF: FPGA: Xmit ZDACW 36607\n [Z Motor]
17-03-18 07:00:46.794 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 07:00:46.794 -07 000000581 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 07:00:46.794 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 07:00:46.804 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:46.804 -07 000000437 INF: FPGA: 'ZDACW 36607' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:00:46.804 -07 000000561 INF: FPGA: Recv YRDPOS 146468
17-03-18 07:00:46.814 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 07:00:46.814 -07 000000581 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:46.814 -07 000000581 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:46.814 -07 000000581 INF: Y Motor: Moving 1352 steps-31
17-03-18 07:00:46.814 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:46.814 -07 000000461 INF: FPGA: Recv ZDACR 36607
17-03-18 07:00:46.824 -07 000000437 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:46.824 -07 000000437 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 07:00:46.824 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:46.914 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:00:46.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:00:47.094 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2642265872, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 07:00:47.094 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:00:47.094 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:47.094 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 07:00:47.094 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 07:00:47.094 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:47.104 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:47.104 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-18 07:00:47.104 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:47.114 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 07:00:47.194 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 07:00:47.194 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 07:00:47.254 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:47.254 -07 000000625 INF: FPGA: Recv YRDPOS 148169
17-03-18 07:00:47.264 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:00:47.264 -07 000000581 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:47.264 -07 000000581 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 07:00:47.264 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.184 mm/sec
17-03-18 07:00:47.964 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.02213,
17-03-18 07:00:48.214 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:48.214 -07 000000561 INF: FPGA: Recv YRDPOS 148169
17-03-18 07:00:48.224 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:48.224 -07 000000581 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:48.254 -07 000000581 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:48.254 -07 000000581 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:48.254 -07 000000581 INF: Y Motor: Moved to 72.3481 after 1460 ms (table move)
17-03-18 07:00:48.254 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167576 mm (DAC = 36607)
17-03-18 07:00:48.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.254 -07 000000625 INF: FPGA: Recv ZSGSRD 35372
17-03-18 07:00:48.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:00:48.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.264 -07 000000437 INF: FPGA: Recv ZSGSRD 35376
17-03-18 07:00:48.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.274 -07 000000581 INF: FPGA: Recv ZSGSRD 35366
17-03-18 07:00:48.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.284 -07 000000480 INF: FPGA: Recv ZSGSRD 35373
17-03-18 07:00:48.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.294 -07 000000461 INF: FPGA: Recv ZSGSRD 35372
17-03-18 07:00:48.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.304 -07 000000581 INF: FPGA: Recv ZSGSRD 35381
17-03-18 07:00:48.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.314 -07 000000611 INF: FPGA: Recv ZSGSRD 35384
17-03-18 07:00:48.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.334 -07 000000576 INF: FPGA: Recv ZSGSRD 35380
17-03-18 07:00:48.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:48.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.344 -07 000000581 INF: FPGA: Recv ZSGSRD 35371
17-03-18 07:00:48.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.354 -07 000000625 INF: FPGA: Recv ZSGSRD 35381
17-03-18 07:00:48.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:48.364 -07 000000501 INF: FPGA: Recv ZPIEZORD 31182
17-03-18 07:00:48.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.374 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -9.2 V.
17-03-18 07:00:48.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35376 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35374 (-166.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35366 (-166.7 uncal um), Max = 35384 (-166.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 07:00:48.374 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35376, posNoise = 8, negNoise = 10
17-03-18 07:00:48.374 -07 000000610 INF: Z Motor: After move to -0.167576, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:48.374 -07 000000610 INF: Z Motor: Settle wait time = 1463 ms, measure time = 116 ms (allowed 150 ms), total time = 1579 ms
17-03-18 07:00:48.374 -07 000000610 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:48.414 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 07:00:48.414 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:48.414 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.167586280738071. ----------
17-03-18 07:00:48.414 -07 000000610 INF: Cycle	156	Tile	16	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:48.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36430, sync = True, waitForSettling = True)
17-03-18 07:00:48.414 -07 000000610 INF: Z Motor: Moving to -0.166766 mm, started at -0.167586 mm, distance = 0.82 um
17-03-18 07:00:48.414 -07 000000610 INF: FPGA: Xmit ZDACW 36430\n [Z Motor]
17-03-18 07:00:48.414 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 07:00:48.424 -07 000000610 INF: FPGA: 'ZDACW 36430' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:00:48.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:48.424 -07 000000576 INF: FPGA: Recv ZDACR 36430
17-03-18 07:00:48.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:48.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.584 -07 000000501 INF: FPGA: Recv ZSGSRD 35256
17-03-18 07:00:48.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:48.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.594 -07 000000625 INF: FPGA: Recv ZSGSRD 35249
17-03-18 07:00:48.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.604 -07 000000576 INF: FPGA: Recv ZSGSRD 35245
17-03-18 07:00:48.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.614 -07 000000501 INF: FPGA: Recv ZSGSRD 35247
17-03-18 07:00:48.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.624 -07 000000437 INF: FPGA: Recv ZSGSRD 35254
17-03-18 07:00:48.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:00:48.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.644 -07 000000501 INF: FPGA: Recv ZSGSRD 35246
17-03-18 07:00:48.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:48.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.654 -07 000000480 INF: FPGA: Recv ZSGSRD 35246
17-03-18 07:00:48.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.684 -07 000000576 INF: FPGA: Recv ZSGSRD 35251
17-03-18 07:00:48.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:00:48.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.714 -07 000000611 INF: FPGA: Recv ZSGSRD 35246
17-03-18 07:00:48.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:00:48.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:48.724 -07 000000437 INF: FPGA: Recv ZSGSRD 35249
17-03-18 07:00:48.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:48.734 -07 000000561 INF: FPGA: Recv ZPIEZORD 30963
17-03-18 07:00:48.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:48.744 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.4 V.
17-03-18 07:00:48.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35249 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35248 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35245 (-165.9 uncal um), Max = 35256 (-165.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:00:48.744 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35249, posNoise = 7, negNoise = 4
17-03-18 07:00:48.744 -07 000000610 INF: Z Motor: After move to -0.166766, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:48.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-18 07:00:48.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:48.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:48.744 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:48.744 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:48.744 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:48.744 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:48.744 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:48.744 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:48.744 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:48.744 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:48.744 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:48.744 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:48.744 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:00:48.744 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:48.754 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:00:48.754 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:48.764 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 07:00:48.764 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 07:00:48.764 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:00:48.764 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:00:48.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36607 150\n [Camera]
17-03-18 07:00:48.964 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:49.444 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:49.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:49.444 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:49.444 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:49.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:49.444 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:49.454 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:49.454 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 07:00:49.454 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:49.454 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) start.
17-03-18 07:00:49.634 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36607 857
17-03-18 07:00:49.784 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:49.814 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 07:00:49.814 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 07:00:49.814 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:49.824 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 07:00:49.824 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 07:00:49.824 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:49.824 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:49.824 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:49.824 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:00:49.834 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 07:00:50.014 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:50.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:50.014 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:50.014 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:50.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:50.014 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:50.014 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:50.014 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 07:00:50.014 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:50.014 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 07:00:50.204 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-18 07:00:50.204 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:50.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36607 150' command took 2 ms to send, 1422 ms to get response, and 1433 ms overall
17-03-18 07:00:50.334 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167131
17-03-18 07:00:50.334 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16713 mm
17-03-18 07:00:50.334 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:50.334 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 07:00:50.334 -07 000000437 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 07:00:50.334 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:50.334 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 36510, sync = True, waitForSettling = False)
17-03-18 07:00:50.334 -07 000000576 INF: Z Motor: Moving to -0.167132 mm, started at -0.166770 mm, distance = -0.36 um
17-03-18 07:00:50.334 -07 000000561 INF: FPGA: Recv YRDPOS 148169
17-03-18 07:00:50.344 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:00:50.344 -07 000000437 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:50.344 -07 000000437 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:50.344 -07 000000437 INF: Y Motor: Moving 1351 steps-30
17-03-18 07:00:50.344 -07 000000576 INF: FPGA: Xmit ZDACW 36510\n [Z Motor]
17-03-18 07:00:50.344 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 07:00:50.354 -07 000000576 INF: FPGA: 'ZDACW 36510' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 07:00:50.354 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:50.354 -07 000000561 INF: FPGA: Recv ZDACR 36510
17-03-18 07:00:50.364 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:50.364 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:50.364 -07 000000576 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 07:00:50.404 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 07:00:50.404 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 07:00:50.404 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:50.404 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 07:00:50.404 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 07:00:50.404 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:50.404 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:50.404 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 07:00:50.414 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:00:50.414 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 07:00:50.734 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 07:00:50.734 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:00:50.794 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:50.794 -07 000000480 INF: FPGA: Recv YRDPOS 149861
17-03-18 07:00:50.804 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:00:50.804 -07 000000437 INF: Y Motor: Encoder = 149861 = motor step 117078.9 = 73.1743 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:50.804 -07 000000437 INF: Y Motor: Position error before settling (table move) = -37 encoder counts (-0.018 mm)
17-03-18 07:00:50.804 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.122 mm/sec
17-03-18 07:00:51.754 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:51.754 -07 000000581 INF: FPGA: Recv YRDPOS 149862
17-03-18 07:00:51.764 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:51.764 -07 000000437 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:51.794 -07 000000437 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:51.794 -07 000000437 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:00:51.794 -07 000000437 INF: Y Motor: Moved to 73.1748 after 1457 ms (table move)
17-03-18 07:00:51.794 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167132 mm (DAC = 36510)
17-03-18 07:00:51.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:51.794 -07 000000576 INF: FPGA: Recv ZSGSRD 35303
17-03-18 07:00:51.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:00:51.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:51.804 -07 000000437 INF: FPGA: Recv ZSGSRD 35303
17-03-18 07:00:51.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:51.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:51.814 -07 000000576 INF: FPGA: Recv ZSGSRD 35307
17-03-18 07:00:51.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:51.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:51.824 -07 000000437 INF: FPGA: Recv ZSGSRD 35311
17-03-18 07:00:51.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:51.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:51.834 -07 000000561 INF: FPGA: Recv ZSGSRD 35301
17-03-18 07:00:51.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:51.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:51.844 -07 000000437 INF: FPGA: Recv ZSGSRD 35310
17-03-18 07:00:51.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:51.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:51.854 -07 000000576 INF: FPGA: Recv ZSGSRD 35304
17-03-18 07:00:51.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:51.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:51.864 -07 000000561 INF: FPGA: Recv ZSGSRD 35306
17-03-18 07:00:51.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:51.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:51.874 -07 000000576 INF: FPGA: Recv ZSGSRD 35305
17-03-18 07:00:51.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:51.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:51.884 -07 000000561 INF: FPGA: Recv ZSGSRD 35300
17-03-18 07:00:51.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:51.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:51.894 -07 000000576 INF: FPGA: Recv ZPIEZORD 31101
17-03-18 07:00:51.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:51.904 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.571 V. Piezo Error = -9.3 V.
17-03-18 07:00:51.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35305 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35304 (-166.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35300 (-166.2 uncal um), Max = 35311 (-166.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:00:51.904 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35305, posNoise = 6, negNoise = 5
17-03-18 07:00:51.904 -07 000000610 INF: Z Motor: After move to -0.167132, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:51.904 -07 000000610 INF: Z Motor: Settle wait time = 1459 ms, measure time = 105 ms (allowed 150 ms), total time = 1564 ms
17-03-18 07:00:51.904 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:51.914 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:00:51.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:00:51.954 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 07:00:51.954 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:51.954 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.167130161676006. ----------
17-03-18 07:00:51.954 -07 000000610 INF: Cycle	156	Tile	17	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:51.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36333, sync = True, waitForSettling = True)
17-03-18 07:00:51.954 -07 000000610 INF: Z Motor: Moving to -0.166322 mm, started at -0.167130 mm, distance = 0.81 um
17-03-18 07:00:51.954 -07 000000610 INF: FPGA: Xmit ZDACW 36333\n [Z Motor]
17-03-18 07:00:51.954 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 07:00:51.964 -07 000000610 INF: FPGA: 'ZDACW 36333' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:00:51.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:51.964 -07 000000576 INF: FPGA: Recv ZDACR 36333
17-03-18 07:00:51.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:51.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:52.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:52.124 -07 000000480 INF: FPGA: Recv ZSGSRD 35183
17-03-18 07:00:52.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:52.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:52.134 -07 000000437 INF: FPGA: Recv ZSGSRD 35183
17-03-18 07:00:52.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:52.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:52.144 -07 000000561 INF: FPGA: Recv ZSGSRD 35179
17-03-18 07:00:52.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:52.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:52.154 -07 000000437 INF: FPGA: Recv ZSGSRD 35182
17-03-18 07:00:52.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:52.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:52.164 -07 000000437 INF: FPGA: Recv ZSGSRD 35181
17-03-18 07:00:52.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:52.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:52.174 -07 000000576 INF: FPGA: Recv ZSGSRD 35180
17-03-18 07:00:52.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:52.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:52.184 -07 000000480 INF: FPGA: Recv ZSGSRD 35181
17-03-18 07:00:52.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:52.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:52.194 -07 000000581 INF: FPGA: Recv ZSGSRD 35183
17-03-18 07:00:52.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:52.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:52.204 -07 000000480 INF: FPGA: Recv ZSGSRD 35181
17-03-18 07:00:52.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:52.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:52.214 -07 000000561 INF: FPGA: Recv ZSGSRD 35179
17-03-18 07:00:52.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:52.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:52.224 -07 000000480 INF: FPGA: Recv ZPIEZORD 30912
17-03-18 07:00:52.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:52.234 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.544 V. Piezo Error = -9.4 V.
17-03-18 07:00:52.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35181 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35181 (-165.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35179 (-165.5 uncal um), Max = 35183 (-165.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 07:00:52.234 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35181, posNoise = 2, negNoise = 2
17-03-18 07:00:52.234 -07 000000610 INF: Z Motor: After move to -0.166322, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:52.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 07:00:52.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:52.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:52.234 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:52.234 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:52.234 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:52.234 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:52.234 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:52.234 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:52.234 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:52.234 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:52.234 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:52.234 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:52.244 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:00:52.244 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:52.244 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:00:52.244 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:52.254 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:00:52.254 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:00:52.254 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:00:52.254 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:00:52.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36510 150\n [Camera]
17-03-18 07:00:52.454 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:52.934 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:52.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:52.934 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:52.934 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:52.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:52.934 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:52.934 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:52.934 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:00:52.934 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:52.934 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:00:53.124 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36510 857
17-03-18 07:00:53.274 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:53.304 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 371 ms.
17-03-18 07:00:53.314 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 07:00:53.314 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:53.314 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 07:00:53.314 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 07:00:53.314 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:53.314 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:53.314 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:00:53.314 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:53.324 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.011254,
17-03-18 07:00:53.324 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 07:00:53.504 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:53.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:53.504 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:53.504 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:53.504 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) start.
17-03-18 07:00:53.504 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:53.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:53.504 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:53.504 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:53.504 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) start.
17-03-18 07:00:53.694 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:00:53.694 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:53.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36510 150' command took 2 ms to send, 1423 ms to get response, and 1434 ms overall
17-03-18 07:00:53.694 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.166269
17-03-18 07:00:53.704 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16627 mm
17-03-18 07:00:53.704 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:53.704 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 36321, sync = True, waitForSettling = False)
17-03-18 07:00:53.704 -07 000000541 INF: Z Motor: Moving to -0.166267 mm, started at -0.166334 mm, distance = 0.07 um
17-03-18 07:00:53.704 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 07:00:53.704 -07 000000012 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 07:00:53.704 -07 000000541 INF: FPGA: Xmit ZDACW 36321\n [Z Motor]
17-03-18 07:00:53.704 -07 000000581 INF: FPGA: Recv ZDACW
17-03-18 07:00:53.714 -07 000000541 INF: FPGA: 'ZDACW 36321' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:00:53.724 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:53.724 -07 000000611 INF: FPGA: Recv ZDACR 36321
17-03-18 07:00:53.734 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:53.734 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:53.734 -07 000000541 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 07:00:53.734 -07 000000437 INF: FPGA: Recv YRDPOS 149862
17-03-18 07:00:53.744 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 07:00:53.744 -07 000000012 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:53.744 -07 000000012 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:53.744 -07 000000012 INF: Y Motor: Moving 1356 steps-37
17-03-18 07:00:53.744 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:53.884 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 07:00:53.884 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 07:00:53.884 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:53.894 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 07:00:53.894 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 07:00:53.894 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:53.894 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:53.894 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:53.894 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 07:00:53.904 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 07:00:54.114 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 07:00:54.114 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 07:00:54.164 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:54.164 -07 000000461 INF: FPGA: Recv YRDPOS 151566
17-03-18 07:00:54.174 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:00:54.174 -07 000000012 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:54.174 -07 000000012 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 07:00:54.174 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.848 mm, average velocity = 2.243 mm/sec
17-03-18 07:00:55.124 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:55.124 -07 000000501 INF: FPGA: Recv YRDPOS 151566
17-03-18 07:00:55.134 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:55.134 -07 000000012 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:55.154 -07 000000012 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:55.154 -07 000000012 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:55.154 -07 000000012 INF: Y Motor: Moved to 74.0068 after 1449 ms (table move)
17-03-18 07:00:55.154 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166267 mm (DAC = 36321)
17-03-18 07:00:55.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.164 -07 000000461 INF: FPGA: Recv ZSGSRD 35170
17-03-18 07:00:55.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:00:55.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.164 -07 000000585 INF: FPGA: Recv ZSGSRD 35172
17-03-18 07:00:55.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:00:55.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.174 -07 000000611 INF: FPGA: Recv ZSGSRD 35173
17-03-18 07:00:55.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.184 -07 000000012 INF: FPGA: Recv ZSGSRD 35169
17-03-18 07:00:55.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.194 -07 000000576 INF: FPGA: Recv ZSGSRD 35168
17-03-18 07:00:55.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.204 -07 000000541 INF: FPGA: Recv ZSGSRD 35175
17-03-18 07:00:55.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.214 -07 000000585 INF: FPGA: Recv ZSGSRD 35174
17-03-18 07:00:55.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.224 -07 000000625 INF: FPGA: Recv ZSGSRD 35173
17-03-18 07:00:55.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.234 -07 000000606 INF: FPGA: Recv ZSGSRD 35174
17-03-18 07:00:55.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.244 -07 000000581 INF: FPGA: Recv ZSGSRD 35171
17-03-18 07:00:55.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:55.254 -07 000000585 INF: FPGA: Recv ZPIEZORD 30921
17-03-18 07:00:55.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.264 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -9.4 V.
17-03-18 07:00:55.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35172 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35172 (-165.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35168 (-165.4 uncal um), Max = 35175 (-165.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:00:55.264 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35172, posNoise = 3, negNoise = 4
17-03-18 07:00:55.264 -07 000000610 INF: Z Motor: After move to -0.166267, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:55.264 -07 000000610 INF: Z Motor: Settle wait time = 1452 ms, measure time = 102 ms (allowed 150 ms), total time = 1554 ms
17-03-18 07:00:55.264 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:55.314 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 07:00:55.314 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:55.314 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.166275741461151. ----------
17-03-18 07:00:55.314 -07 000000610 INF: Cycle	156	Tile	18	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:55.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36145, sync = True, waitForSettling = True)
17-03-18 07:00:55.314 -07 000000610 INF: Z Motor: Moving to -0.165461 mm, started at -0.166276 mm, distance = 0.81 um
17-03-18 07:00:55.314 -07 000000610 INF: FPGA: Xmit ZDACW 36145\n [Z Motor]
17-03-18 07:00:55.314 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 07:00:55.324 -07 000000610 INF: FPGA: 'ZDACW 36145' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:00:55.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:55.324 -07 000000012 INF: FPGA: Recv ZDACR 36145
17-03-18 07:00:55.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:55.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.484 -07 000000480 INF: FPGA: Recv ZSGSRD 35046
17-03-18 07:00:55.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:55.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.494 -07 000000480 INF: FPGA: Recv ZSGSRD 35054
17-03-18 07:00:55.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.504 -07 000000581 INF: FPGA: Recv ZSGSRD 35044
17-03-18 07:00:55.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.514 -07 000000581 INF: FPGA: Recv ZSGSRD 35045
17-03-18 07:00:55.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.524 -07 000000480 INF: FPGA: Recv ZSGSRD 35045
17-03-18 07:00:55.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.534 -07 000000581 INF: FPGA: Recv ZSGSRD 35048
17-03-18 07:00:55.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.544 -07 000000541 INF: FPGA: Recv ZSGSRD 35054
17-03-18 07:00:55.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.554 -07 000000611 INF: FPGA: Recv ZSGSRD 35041
17-03-18 07:00:55.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.564 -07 000000480 INF: FPGA: Recv ZSGSRD 35046
17-03-18 07:00:55.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:55.574 -07 000000611 INF: FPGA: Recv ZSGSRD 35044
17-03-18 07:00:55.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:55.584 -07 000000012 INF: FPGA: Recv ZPIEZORD 30736
17-03-18 07:00:55.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:55.594 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.515 V. Piezo Error = -9.5 V.
17-03-18 07:00:55.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35047 (-164.6 uncal um), Error = 0.9 uncal um, Median = 35046 (-164.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35041 (-164.6 uncal um), Max = 35054 (-164.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:00:55.594 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35047, posNoise = 7, negNoise = 6
17-03-18 07:00:55.594 -07 000000610 INF: Z Motor: After move to -0.165461, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:55.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:00:55.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:55.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:55.594 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:55.594 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:55.594 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:55.594 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:55.594 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:55.594 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:55.594 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:55.594 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:55.594 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:55.594 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:55.604 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 07:00:55.604 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:55.604 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:00:55.604 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:55.614 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:00:55.614 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:00:55.614 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:00:55.614 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:00:55.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36321 150\n [Camera]
17-03-18 07:00:55.814 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:00:56.294 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:00:56.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:00:56.294 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:56.294 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:56.294 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 07:00:56.294 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:00:56.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:00:56.294 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:56.294 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:56.294 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 07:00:56.484 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36321 857
17-03-18 07:00:56.634 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:00:56.664 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 07:00:56.674 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 07:00:56.674 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:56.674 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 07:00:56.674 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 07:00:56.674 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:56.674 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:00:56.674 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:00:56.674 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:56.684 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:00:56.864 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:00:56.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:00:56.864 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:00:56.864 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:00:56.864 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 07:00:56.864 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:00:56.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:00:56.864 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:00:56.864 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:00:56.864 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:00:56.914 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:00:56.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:00:57.054 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1428
17-03-18 07:00:57.054 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:00:57.054 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36321 150' command took 4 ms to send, 1423 ms to get response, and 1435 ms overall
17-03-18 07:00:57.054 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 07:00:57.054 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.165472714943431. ------
17-03-18 07:00:57.064 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17171 mm
17-03-18 07:00:57.064 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:00:57.064 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:00:57.064 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 07:00:57.064 -07 000000611 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 07:00:57.074 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:57.244 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 07:00:57.244 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 07:00:57.244 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:57.244 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 07:00:57.244 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 07:00:57.244 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:57.254 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:57.254 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:00:57.254 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 07:00:57.254 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 07:00:57.264 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37511, sync = True, waitForSettling = False)
17-03-18 07:00:57.264 -07 000000461 INF: Z Motor: Moving to -0.171714 mm, started at -0.165473 mm, distance = -6.24 um
17-03-18 07:00:57.264 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:00:57.264 -07 000000576 INF: FPGA: Recv YRDPOS 151566
17-03-18 07:00:57.264 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 198 ms to get response, and 208 ms overall
17-03-18 07:00:57.264 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 189 ms to get response, and 206 ms overall
17-03-18 07:00:57.264 -07 000000611 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:57.274 -07 000000611 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:00:57.274 -07 000000611 INF: Y Motor: Moving 1353 steps-32
17-03-18 07:00:57.274 -07 000000461 INF: FPGA: Xmit ZDACW 37511\n [Z Motor]
17-03-18 07:00:57.274 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 07:00:57.284 -07 000000461 INF: FPGA: 'ZDACW 37511' command took 2 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 07:00:57.284 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:00:57.294 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:00:57.304 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:57.304 -07 000000512 INF: FPGA: Recv ZDACR 37511
17-03-18 07:00:57.314 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:00:57.314 -07 000000461 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 07:00:57.494 -07 000000585 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:00:57.494 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 223 ms overall
17-03-18 07:00:57.654 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 07:00:57.654 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 07:00:57.694 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:57.694 -07 000000569 INF: FPGA: Recv YRDPOS 153253
17-03-18 07:00:57.704 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:00:57.704 -07 000000611 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:57.704 -07 000000611 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 07:00:57.704 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.180 mm/sec
17-03-18 07:00:58.654 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:00:58.654 -07 000000581 INF: FPGA: Recv YRDPOS 153253
17-03-18 07:00:58.664 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:58.664 -07 000000611 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:00:58.684 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.016692,
17-03-18 07:00:58.684 -07 000000611 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:00:58.684 -07 000000611 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:00:58.684 -07 000000611 INF: Y Motor: Moved to 74.8306 after 1620 ms (table move)
17-03-18 07:00:58.684 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171714 mm (DAC = 37511)
17-03-18 07:00:58.704 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:58.704 -07 000000501 INF: FPGA: Recv ZSGSRD 36018
17-03-18 07:00:58.714 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 07:00:58.714 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:58.714 -07 000000581 INF: FPGA: Recv ZSGSRD 36026
17-03-18 07:00:58.724 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:58.734 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:58.734 -07 000000461 INF: FPGA: Recv ZSGSRD 36021
17-03-18 07:00:58.744 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:58.744 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:58.744 -07 000000581 INF: FPGA: Recv ZSGSRD 36017
17-03-18 07:00:58.754 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:58.764 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:58.764 -07 000000480 INF: FPGA: Recv ZSGSRD 36020
17-03-18 07:00:58.774 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:00:58.774 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:58.774 -07 000000012 INF: FPGA: Recv ZSGSRD 36017
17-03-18 07:00:58.784 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:58.784 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:58.784 -07 000000561 INF: FPGA: Recv ZSGSRD 36015
17-03-18 07:00:58.794 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:58.794 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:58.794 -07 000000585 INF: FPGA: Recv ZSGSRD 36019
17-03-18 07:00:58.804 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:58.804 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:58.804 -07 000000581 INF: FPGA: Recv ZSGSRD 36021
17-03-18 07:00:58.814 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:58.814 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:58.814 -07 000000461 INF: FPGA: Recv ZSGSRD 36018
17-03-18 07:00:58.824 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:58.824 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:58.824 -07 000000576 INF: FPGA: Recv ZPIEZORD 32050
17-03-18 07:00:58.834 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:58.834 -07 000000541 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -8.8 V.
17-03-18 07:00:58.834 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36019 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36018 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36015 (-170.8 uncal um), Max = 36026 (-170.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:00:58.834 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36019, posNoise = 7, negNoise = 4
17-03-18 07:00:58.834 -07 000000541 INF: Z Motor: After move to -0.171714, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:58.834 -07 000000541 INF: Z Motor: Settle wait time = 1419 ms, measure time = 143 ms (allowed 150 ms), total time = 1562 ms
17-03-18 07:00:58.834 -07 000000541 INF: Z Motor: Waiting extra 7 ms after reading position to reach expected total of 150 ms
17-03-18 07:00:58.844 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1779 ms
17-03-18 07:00:58.844 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:00:58.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:58.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:58.844 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:58.844 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:58.844 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:00:58.844 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:58.844 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:58.844 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:00:58.854 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 07:00:58.854 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:00:58.864 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 07:00:58.864 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 07:00:58.864 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:00:58.914 -07 000000581 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:00:59.214 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:00:59.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:00:59.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:00:59.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) start.
17-03-18 07:00:59.254 -07 000000611 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:00:59.254 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 07:00:59.254 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 385 ms overall
17-03-18 07:00:59.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 07:00:59.344 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:00:59.344 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:00:59.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 07:00:59.354 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:00:59.354 -07 000000012 INF: Autofocus start
17-03-18 07:00:59.354 -07 000000012 INF: MeasureProfile start
17-03-18 07:00:59.354 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:00:59.364 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:00:59.364 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:00:59.364 -07 000000012 INF: MeasureProfile done
17-03-18 07:00:59.364 -07 000000012 INF: X=32  Z correction [um]=0.09220707
17-03-18 07:00:59.364 -07 000000012 INF: Autofocus finished
17-03-18 07:00:59.564 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:00:59.564 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:00:59.564 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.171717049145223. ----------
17-03-18 07:00:59.564 -07 000000610 INF: Cycle	156	Tile	19	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:00:59.574 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36044, sync = True, waitForSettling = True)
17-03-18 07:00:59.574 -07 000000610 INF: Z Motor: Moving to -0.164999 mm, started at -0.171717 mm, distance = 6.72 um
17-03-18 07:00:59.574 -07 000000610 INF: FPGA: Xmit ZDACW 36044\n [Z Motor]
17-03-18 07:00:59.574 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:00:59.584 -07 000000610 INF: FPGA: 'ZDACW 36044' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:00:59.584 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:00:59.584 -07 000000625 INF: FPGA: Recv ZDACR 36044
17-03-18 07:00:59.594 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:59.594 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:00:59.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:59.744 -07 000000474 INF: FPGA: Recv ZSGSRD 34976
17-03-18 07:00:59.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:00:59.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:59.754 -07 000000569 INF: FPGA: Recv ZSGSRD 34974
17-03-18 07:00:59.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:59.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:59.764 -07 000000461 INF: FPGA: Recv ZSGSRD 34976
17-03-18 07:00:59.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:59.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:59.774 -07 000000585 INF: FPGA: Recv ZSGSRD 34970
17-03-18 07:00:59.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:59.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:59.784 -07 000000561 INF: FPGA: Recv ZSGSRD 34977
17-03-18 07:00:59.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:59.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:59.794 -07 000000576 INF: FPGA: Recv ZSGSRD 34976
17-03-18 07:00:59.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:59.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:59.804 -07 000000012 INF: FPGA: Recv ZSGSRD 34971
17-03-18 07:00:59.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:59.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:59.814 -07 000000625 INF: FPGA: Recv ZSGSRD 34976
17-03-18 07:00:59.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:59.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:59.824 -07 000000541 INF: FPGA: Recv ZSGSRD 34975
17-03-18 07:00:59.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:59.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:00:59.834 -07 000000541 INF: FPGA: Recv ZSGSRD 34974
17-03-18 07:00:59.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:59.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:00:59.844 -07 000000541 INF: FPGA: Recv ZPIEZORD 30655
17-03-18 07:00:59.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:00:59.854 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.500 V. Piezo Error = -9.5 V.
17-03-18 07:00:59.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.0 um, Read 10 ADC samples: Avg = 34974 (-164.1 uncal um), Error = 0.9 uncal um, Median = 34976 (-164.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 34970 (-164.1 uncal um), Max = 34977 (-164.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:00:59.854 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34974, posNoise = 3, negNoise = 4
17-03-18 07:00:59.854 -07 000000610 INF: Z Motor: After move to -0.164999, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:00:59.854 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 07:00:59.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:00:59.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:00:59.854 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:00:59.854 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:00:59.854 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:00:59.854 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:00:59.854 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:00:59.854 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:00:59.854 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:00:59.854 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:00:59.854 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:00:59.854 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:00:59.864 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:00:59.864 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:00:59.864 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:00:59.864 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:00:59.874 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 07:00:59.874 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:00:59.874 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 07:00:59.874 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:00:59.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36220 150\n [Camera]
17-03-18 07:01:00.074 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:00.544 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:00.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:00.544 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:00.544 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:00.544 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 07:01:00.544 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:00.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:00.544 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:00.544 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:00.544 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 07:01:00.734 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36220 857
17-03-18 07:01:00.884 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:00.934 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 07:01:00.934 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:01:00.934 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:00.934 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 07:01:00.934 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 07:01:00.934 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:00.934 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:01:00.934 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 07:01:00.934 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:00.944 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 07:01:01.114 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:01.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:01.114 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:01.114 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:01.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:01.114 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:01.124 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:01.124 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 07:01:01.124 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:01.124 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 07:01:01.304 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:01:01.304 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:01.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36220 150' command took 2 ms to send, 1427 ms to get response, and 1433 ms overall
17-03-18 07:01:01.504 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 07:01:01.504 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 07:01:01.504 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:01.504 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 07:01:01.504 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:01:01.504 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:01.514 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:01:01.514 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:01:01.514 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 07:01:01.514 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 07:01:01.514 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 07:01:01.554 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 07:01:01.554 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 07:01:01.594 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 07:01:01.594 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 07:01:01.594 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 07:01:01.604 -07 000000512 INF: FPGA: Recv EMCUR 
17-03-18 07:01:01.604 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:01:01.604 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 07:01:01.914 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:01:01.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:01:02.104 -07 000000541 INF: FPGA: Recv EMIN
17-03-18 07:01:02.104 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 07:01:02.104 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 07:01:02.104 -07 000000611 INF: FPGA: Recv EMCUR 
17-03-18 07:01:02.114 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:01:02.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 07:01:02.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.165003747457083. ------
17-03-18 07:01:02.244 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:01:02.244 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13933 mm
17-03-18 07:01:02.244 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:02.244 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30437, sync = True, waitForSettling = False)
17-03-18 07:01:02.244 -07 000000512 INF: Z Motor: Moving to -0.139332 mm, started at -0.165004 mm, distance = 25.67 um
17-03-18 07:01:02.244 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:01:02.244 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 07:01:02.244 -07 000000625 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 07:01:02.254 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:01:02.254 -07 000000512 INF: FPGA: Xmit ZDACW 30437\n [Z Motor]
17-03-18 07:01:02.254 -07 000000541 INF: FPGA: Recv ZDACW
17-03-18 07:01:02.264 -07 000000512 INF: FPGA: 'ZDACW 30437' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 07:01:02.264 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:02.264 -07 000000541 INF: FPGA: Recv YRDPOS 153254
17-03-18 07:01:02.274 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:01:02.274 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 07:01:02.274 -07 000000625 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:02.274 -07 000000625 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 07:01:02.274 -07 000000625 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 07:01:02.284 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:02.284 -07 000000541 INF: FPGA: Recv ZDACR 30437
17-03-18 07:01:02.294 -07 000000625 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 07:01:02.294 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:01:02.294 -07 000000512 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 07:01:02.474 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:01:02.474 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 07:01:03.914 -07 000000461 INF: FPGA: Recv YMVTO 122701 23904
17-03-18 07:01:03.914 -07 000000625 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1644 ms overall
17-03-18 07:01:03.914 -07 000000625 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 07:01:03.914 -07 000000625 INF: Y Motor: To move from 74.831 to 59.913 (-14.918 mm) should take 23870 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 07:01:03.914 -07 000000625 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.918 mm, average velocity = 9.074 mm/sec
17-03-18 07:01:04.084 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.023489,
17-03-18 07:01:06.764 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:06.764 -07 000000012 INF: FPGA: Recv YRDPOS 122695
17-03-18 07:01:06.774 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:06.774 -07 000000625 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:06.814 -07 000000625 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:06.814 -07 000000625 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 07:01:06.814 -07 000000625 INF: Y Motor: Moved to 59.9097 after 4564 ms
17-03-18 07:01:06.814 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139332 mm (DAC = 30437)
17-03-18 07:01:06.814 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:06.824 -07 000000512 INF: FPGA: Recv ZSGSRD 30972
17-03-18 07:01:06.824 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:01:06.824 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:06.824 -07 000000480 INF: FPGA: Recv ZSGSRD 30978
17-03-18 07:01:06.834 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:06.834 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:06.834 -07 000000541 INF: FPGA: Recv ZSGSRD 30977
17-03-18 07:01:06.844 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:06.844 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:06.844 -07 000000461 INF: FPGA: Recv ZSGSRD 30976
17-03-18 07:01:06.854 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:06.854 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:06.854 -07 000000625 INF: FPGA: Recv ZSGSRD 30973
17-03-18 07:01:06.864 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:06.864 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:06.864 -07 000000480 INF: FPGA: Recv ZSGSRD 30970
17-03-18 07:01:06.874 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:06.874 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:06.874 -07 000000474 INF: FPGA: Recv ZSGSRD 30981
17-03-18 07:01:06.884 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:06.884 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:06.884 -07 000000576 INF: FPGA: Recv ZSGSRD 30982
17-03-18 07:01:06.894 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:06.894 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:06.894 -07 000000625 INF: FPGA: Recv ZSGSRD 30972
17-03-18 07:01:06.904 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:06.904 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:06.904 -07 000000606 INF: FPGA: Recv ZSGSRD 30980
17-03-18 07:01:06.914 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:06.914 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:06.914 -07 000000581 INF: FPGA: Recv ZPIEZORD 26455
17-03-18 07:01:06.914 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:01:06.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:01:06.924 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:06.924 -07 000000611 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -9.9 V.
17-03-18 07:01:06.924 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30976 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30976 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30970 (-138.5 uncal um), Max = 30982 (-138.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:01:06.924 -07 000000611 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30976, posNoise = 6, negNoise = 6
17-03-18 07:01:06.924 -07 000000611 INF: Z Motor: After move to -0.139332, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:06.924 -07 000000611 INF: Z Motor: Settle wait time = 4568 ms, measure time = 104 ms (allowed 150 ms), total time = 4672 ms
17-03-18 07:01:06.924 -07 000000611 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:06.974 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4724 ms
17-03-18 07:01:06.974 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:06.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:06.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:06.984 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:06.984 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:06.984 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:01:06.984 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:06.984 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:06.984 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 07:01:07.004 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 07:01:07.004 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:01:07.014 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:01:07.014 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:01:07.014 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 07:01:07.014 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-18 07:01:07.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:01:07.064 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:01:07.364 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:01:07.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:01:07.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:01:07.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 07:01:07.404 -07 000000581 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:01:07.404 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 07:01:07.404 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 07:01:07.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 07:01:07.484 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:07.484 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:01:07.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 07:01:07.504 -07 000000437 INF: Image SNR check: start
17-03-18 07:01:07.504 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:01:07.514 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:01:07.514 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:01:07.514 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:01:07.524 -07 000000437 INF: Image SNR check: pass  [peak (Max-Min)=114.74]
17-03-18 07:01:07.524 -07 000000437 INF: Autofocus start
17-03-18 07:01:07.524 -07 000000437 INF: MeasureProfile start
17-03-18 07:01:07.534 -07 000000437 INF: MeasureProfile done
17-03-18 07:01:07.534 -07 000000437 INF: X=32  Z correction [um]=0.1299841
17-03-18 07:01:07.534 -07 000000437 INF: Autofocus finished
17-03-18 07:01:07.714 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:01:07.714 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 07:01:07.724 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.139319747314322. ----------
17-03-18 07:01:07.724 -07 000000610 INF: Cycle	156	Tile	1	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:07.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28978, sync = True, waitForSettling = True)
17-03-18 07:01:07.724 -07 000000610 INF: Z Motor: Moving to -0.132653 mm, started at -0.139320 mm, distance = 6.67 um
17-03-18 07:01:07.724 -07 000000610 INF: FPGA: Xmit ZDACW 28978\n [Z Motor]
17-03-18 07:01:07.724 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:01:07.734 -07 000000610 INF: FPGA: 'ZDACW 28978' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:01:07.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:07.734 -07 000000474 INF: FPGA: Recv ZDACR 28978
17-03-18 07:01:07.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:07.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:07.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:07.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29939
17-03-18 07:01:07.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:07.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:07.904 -07 000000480 INF: FPGA: Recv ZSGSRD 29944
17-03-18 07:01:07.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:07.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:07.914 -07 000000437 INF: FPGA: Recv ZSGSRD 29937
17-03-18 07:01:07.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:07.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:07.924 -07 000000606 INF: FPGA: Recv ZSGSRD 29933
17-03-18 07:01:07.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:07.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:07.934 -07 000000474 INF: FPGA: Recv ZSGSRD 29937
17-03-18 07:01:07.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:07.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:07.944 -07 000000461 INF: FPGA: Recv ZSGSRD 29938
17-03-18 07:01:07.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:07.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:07.954 -07 000000480 INF: FPGA: Recv ZSGSRD 29935
17-03-18 07:01:07.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:07.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:07.964 -07 000000611 INF: FPGA: Recv ZSGSRD 29937
17-03-18 07:01:07.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:07.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:07.974 -07 000000581 INF: FPGA: Recv ZSGSRD 29935
17-03-18 07:01:07.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:07.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:07.984 -07 000000541 INF: FPGA: Recv ZSGSRD 29939
17-03-18 07:01:07.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:07.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:07.994 -07 000000480 INF: FPGA: Recv ZPIEZORD 25296
17-03-18 07:01:08.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:08.004 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.422 V. Piezo Error = -10.2 V.
17-03-18 07:01:08.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29937 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29937 (-131.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29933 (-131.8 uncal um), Max = 29944 (-131.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:01:08.004 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29937, posNoise = 7, negNoise = 4
17-03-18 07:01:08.004 -07 000000610 INF: Z Motor: After move to -0.132653, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:08.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 07:01:08.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:08.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:08.004 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:08.004 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:08.004 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:08.004 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:08.004 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:08.004 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:08.004 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:01:08.004 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 07:01:08.004 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:08.004 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:08.014 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:01:08.014 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:08.024 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:01:08.024 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 07:01:08.024 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 07:01:08.024 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:08.034 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 07:01:08.034 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:08.044 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 07:01:08.044 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 07:01:08.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 29155 150\n [Camera]
17-03-18 07:01:08.244 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:08.714 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:08.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:08.714 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:08.714 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:08.714 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:08.714 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:08.724 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:08.724 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:01:08.724 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:08.724 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 07:01:08.904 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29155 857
17-03-18 07:01:09.054 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:09.104 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 07:01:09.104 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:01:09.104 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:09.114 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 07:01:09.114 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:01:09.114 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:09.114 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:09.114 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 07:01:09.114 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:09.124 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 07:01:09.284 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:09.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:09.284 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:09.284 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:09.284 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 07:01:09.284 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:09.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:09.284 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:09.284 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:09.284 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:01:09.444 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.02213,
17-03-18 07:01:09.474 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:01:09.474 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:09.474 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 29155 150' command took 2 ms to send, 1426 ms to get response, and 1434 ms overall
17-03-18 07:01:09.474 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133054
17-03-18 07:01:09.474 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13305 mm
17-03-18 07:01:09.474 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:09.594 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 07:01:09.594 -07 000000611 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 07:01:09.594 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:09.594 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29066, sync = True, waitForSettling = False)
17-03-18 07:01:09.594 -07 000000501 INF: Z Motor: Moving to -0.133056 mm, started at -0.132645 mm, distance = -0.41 um
17-03-18 07:01:09.604 -07 000000501 INF: FPGA: Xmit ZDACW 29066\n [Z Motor]
17-03-18 07:01:09.684 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 07:01:09.684 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 07:01:09.684 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:09.684 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 07:01:09.684 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 07:01:09.684 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:09.684 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:09.694 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 07:01:09.694 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 07:01:09.694 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 07:01:09.704 -07 000000569 INF: FPGA: Recv YRDPOS 122695
17-03-18 07:01:09.704 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 07:01:09.704 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 101 ms to get response, and 107 ms overall
17-03-18 07:01:09.704 -07 000000611 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:09.704 -07 000000611 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:09.704 -07 000000611 INF: Y Motor: Moving 1333 steps0
17-03-18 07:01:09.704 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:09.704 -07 000000501 INF: FPGA: 'ZDACW 29066' command took 0 ms to send, 91 ms to get response, and 106 ms overall
17-03-18 07:01:09.714 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:09.714 -07 000000437 INF: FPGA: Recv ZDACR 29066
17-03-18 07:01:09.724 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 07:01:09.724 -07 000000501 INF: Z Motor: MoveAbsStepped took 125 ms (did NOT wait for settling yet))
17-03-18 07:01:10.084 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 07:01:10.084 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-18 07:01:10.144 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:10.144 -07 000000474 INF: FPGA: Recv YRDPOS 124378
17-03-18 07:01:10.154 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 07:01:10.154 -07 000000611 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:10.154 -07 000000611 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 07:01:10.154 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.833 mm, average velocity = 2.204 mm/sec
17-03-18 07:01:11.104 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:11.104 -07 000000437 INF: FPGA: Recv YRDPOS 124379
17-03-18 07:01:11.114 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.114 -07 000000611 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:11.144 -07 000000611 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:11.144 -07 000000611 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:01:11.144 -07 000000611 INF: Y Motor: Moved to 60.7319 after 1550 ms (table move)
17-03-18 07:01:11.144 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133056 mm (DAC = 29066)
17-03-18 07:01:11.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.154 -07 000000461 INF: FPGA: Recv ZSGSRD 30000
17-03-18 07:01:11.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:01:11.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.154 -07 000000569 INF: FPGA: Recv ZSGSRD 29991
17-03-18 07:01:11.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.164 -07 000000461 INF: FPGA: Recv ZSGSRD 30009
17-03-18 07:01:11.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:01:11.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.174 -07 000000569 INF: FPGA: Recv ZSGSRD 30008
17-03-18 07:01:11.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.184 -07 000000501 INF: FPGA: Recv ZSGSRD 29993
17-03-18 07:01:11.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.194 -07 000000576 INF: FPGA: Recv ZSGSRD 29997
17-03-18 07:01:11.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.204 -07 000000461 INF: FPGA: Recv ZSGSRD 29997
17-03-18 07:01:11.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.214 -07 000000569 INF: FPGA: Recv ZSGSRD 30005
17-03-18 07:01:11.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.224 -07 000000501 INF: FPGA: Recv ZSGSRD 30007
17-03-18 07:01:11.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.234 -07 000000576 INF: FPGA: Recv ZSGSRD 29998
17-03-18 07:01:11.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:11.244 -07 000000611 INF: FPGA: Recv ZPIEZORD 25504
17-03-18 07:01:11.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.254 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.435 V. Piezo Error = -9.9 V.
17-03-18 07:01:11.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30000 (-132.3 uncal um), Error = 0.8 uncal um, Median = 29999 (-132.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29991 (-132.2 uncal um), Max = 30009 (-132.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 07:01:11.254 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30000, posNoise = 9, negNoise = 9
17-03-18 07:01:11.254 -07 000000610 INF: Z Motor: After move to -0.133056, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:11.254 -07 000000610 INF: Z Motor: Settle wait time = 1552 ms, measure time = 103 ms (allowed 150 ms), total time = 1655 ms
17-03-18 07:01:11.254 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:11.304 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1821 ms
17-03-18 07:01:11.304 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:11.304 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.133049716263964. ----------
17-03-18 07:01:11.304 -07 000000610 INF: Cycle	156	Tile	2	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:11.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28889, sync = True, waitForSettling = True)
17-03-18 07:01:11.304 -07 000000610 INF: Z Motor: Moving to -0.132245 mm, started at -0.133050 mm, distance = 0.80 um
17-03-18 07:01:11.304 -07 000000610 INF: FPGA: Xmit ZDACW 28889\n [Z Motor]
17-03-18 07:01:11.304 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:01:11.314 -07 000000610 INF: FPGA: 'ZDACW 28889' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:01:11.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:11.314 -07 000000576 INF: FPGA: Recv ZDACR 28889
17-03-18 07:01:11.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:11.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.474 -07 000000461 INF: FPGA: Recv ZSGSRD 29876
17-03-18 07:01:11.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:11.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.484 -07 000000585 INF: FPGA: Recv ZSGSRD 29881
17-03-18 07:01:11.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.494 -07 000000474 INF: FPGA: Recv ZSGSRD 29868
17-03-18 07:01:11.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.504 -07 000000480 INF: FPGA: Recv ZSGSRD 29872
17-03-18 07:01:11.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.514 -07 000000461 INF: FPGA: Recv ZSGSRD 29877
17-03-18 07:01:11.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.524 -07 000000561 INF: FPGA: Recv ZSGSRD 29875
17-03-18 07:01:11.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.534 -07 000000611 INF: FPGA: Recv ZSGSRD 29878
17-03-18 07:01:11.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.544 -07 000000012 INF: FPGA: Recv ZSGSRD 29878
17-03-18 07:01:11.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.554 -07 000000606 INF: FPGA: Recv ZSGSRD 29871
17-03-18 07:01:11.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:11.564 -07 000000480 INF: FPGA: Recv ZSGSRD 29877
17-03-18 07:01:11.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:11.574 -07 000000611 INF: FPGA: Recv ZPIEZORD 25341
17-03-18 07:01:11.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:11.584 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.9 V.
17-03-18 07:01:11.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29875 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29876 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29868 (-131.4 uncal um), Max = 29881 (-131.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:01:11.584 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29875, posNoise = 6, negNoise = 7
17-03-18 07:01:11.584 -07 000000610 INF: Z Motor: After move to -0.132245, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:11.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 07:01:11.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:11.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:11.584 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:11.584 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:11.584 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:11.584 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:11.584 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:11.584 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:11.584 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:11.584 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:11.584 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 07:01:11.584 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:11.584 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:01:11.584 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:11.594 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:01:11.594 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:11.604 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:01:11.604 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:01:11.604 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:01:11.604 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:01:11.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 29066 150\n [Camera]
17-03-18 07:01:11.804 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:11.914 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:01:11.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:01:12.284 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:12.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:12.284 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:12.284 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:12.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:12.284 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:12.284 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:12.284 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:01:12.284 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:12.284 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 07:01:12.474 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29066 857
17-03-18 07:01:12.624 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:12.684 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 07:01:12.684 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 07:01:12.684 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:12.684 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 07:01:12.684 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 07:01:12.684 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:12.684 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:12.684 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 07:01:12.684 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:12.694 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 07:01:12.854 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:12.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:12.854 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:12.854 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:12.854 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) start.
17-03-18 07:01:12.854 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:12.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:12.854 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:12.854 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:12.854 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) start.
17-03-18 07:01:13.044 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:01:13.044 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:13.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 29066 150' command took 2 ms to send, 1422 ms to get response, and 1434 ms overall
17-03-18 07:01:13.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 07:01:13.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.132246689746244. ------
17-03-18 07:01:13.044 -07 000000585 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:01:13.044 -07 000000474 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13916 mm
17-03-18 07:01:13.044 -07 000000474 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:13.054 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:01:13.054 -07 000000585 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 07:01:13.054 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 30399, sync = True, waitForSettling = False)
17-03-18 07:01:13.054 -07 000000437 INF: Z Motor: Moving to -0.139158 mm, started at -0.132247 mm, distance = -6.91 um
17-03-18 07:01:13.054 -07 000000585 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:01:13.054 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 07:01:13.054 -07 000000012 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 07:01:13.064 -07 000000437 INF: FPGA: Xmit ZDACW 30399\n [Z Motor]
17-03-18 07:01:13.074 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:13.244 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 07:01:13.244 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 07:01:13.244 -07 000000581 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:13.244 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 07:01:13.244 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 07:01:13.244 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:13.244 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:13.244 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 07:01:13.254 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:13.254 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 07:01:13.814 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 07:01:13.814 -07 000000501 INF: FPGA: Recv YRDPOS 124379
17-03-18 07:01:13.814 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:01:13.814 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 731 ms to get response, and 757 ms overall
17-03-18 07:01:13.814 -07 000000012 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:13.814 -07 000000012 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:13.814 -07 000000012 INF: Y Motor: Moving 1345 steps-23
17-03-18 07:01:13.814 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:13.814 -07 000000437 INF: FPGA: 'ZDACW 30399' command took 0 ms to send, 741 ms to get response, and 758 ms overall
17-03-18 07:01:13.814 -07 000000585 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 751 ms to get response, and 758 ms overall
17-03-18 07:01:13.824 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:13.824 -07 000000512 INF: FPGA: Recv ZDACR 30399
17-03-18 07:01:13.834 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 07:01:13.834 -07 000000437 INF: Z Motor: MoveAbsStepped took 777 ms (did NOT wait for settling yet))
17-03-18 07:01:14.194 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 07:01:14.194 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 372 ms to get response, and 380 ms overall
17-03-18 07:01:14.244 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:14.244 -07 000000606 INF: FPGA: Recv YRDPOS 126080
17-03-18 07:01:14.254 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:01:14.254 -07 000000012 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:14.254 -07 000000012 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 07:01:14.254 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.841 mm, average velocity = 2.212 mm/sec
17-03-18 07:01:14.914 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.977204,
17-03-18 07:01:15.204 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:15.204 -07 000000501 INF: FPGA: Recv YRDPOS 126080
17-03-18 07:01:15.214 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:15.214 -07 000000012 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:15.244 -07 000000012 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:15.244 -07 000000012 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:01:15.244 -07 000000012 INF: Y Motor: Moved to 61.5625 after 2189 ms (table move)
17-03-18 07:01:15.244 -07 000000474 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139158 mm (DAC = 30399)
17-03-18 07:01:15.244 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:15.254 -07 000000012 INF: FPGA: Recv ZSGSRD 30954
17-03-18 07:01:15.254 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:01:15.254 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:15.254 -07 000000501 INF: FPGA: Recv ZSGSRD 30949
17-03-18 07:01:15.264 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:01:15.264 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:15.264 -07 000000437 INF: FPGA: Recv ZSGSRD 30956
17-03-18 07:01:15.274 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:15.274 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:15.274 -07 000000501 INF: FPGA: Recv ZSGSRD 30952
17-03-18 07:01:15.284 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:15.284 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:15.284 -07 000000501 INF: FPGA: Recv ZSGSRD 30953
17-03-18 07:01:15.294 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:15.294 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:15.294 -07 000000501 INF: FPGA: Recv ZSGSRD 30949
17-03-18 07:01:15.304 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:15.304 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:15.304 -07 000000576 INF: FPGA: Recv ZSGSRD 30948
17-03-18 07:01:15.314 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:15.314 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:15.314 -07 000000501 INF: FPGA: Recv ZSGSRD 30953
17-03-18 07:01:15.324 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:15.324 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:15.324 -07 000000625 INF: FPGA: Recv ZSGSRD 30951
17-03-18 07:01:15.334 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:15.334 -07 000000474 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:15.334 -07 000000625 INF: FPGA: Recv ZSGSRD 30955
17-03-18 07:01:15.344 -07 000000474 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:15.344 -07 000000474 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:15.344 -07 000000501 INF: FPGA: Recv ZPIEZORD 26786
17-03-18 07:01:15.354 -07 000000474 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:15.354 -07 000000474 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.639 V. Piezo Error = -9.2 V.
17-03-18 07:01:15.354 -07 000000474 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30952 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30952 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30948 (-138.3 uncal um), Max = 30956 (-138.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:01:15.354 -07 000000474 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30952, posNoise = 4, negNoise = 4
17-03-18 07:01:15.354 -07 000000474 INF: Z Motor: After move to -0.139158, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:15.354 -07 000000474 INF: Z Motor: Settle wait time = 2195 ms, measure time = 103 ms (allowed 150 ms), total time = 2298 ms
17-03-18 07:01:15.354 -07 000000474 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:15.404 -07 000000474 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2350 ms
17-03-18 07:01:15.404 -07 000000474 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:15.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:15.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:15.414 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:15.414 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:01:15.414 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:15.414 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:15.414 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:15.414 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:01:15.414 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:01:15.414 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:01:15.424 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 07:01:15.424 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 07:01:15.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:01:15.474 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:01:15.774 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:01:15.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:01:15.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:01:15.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-18 07:01:15.814 -07 000000585 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:01:15.814 -07 000000437 INF: FPGA: Recv CAMSNAP
17-03-18 07:01:15.814 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 07:01:15.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 07:01:15.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:15.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:01:15.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 07:01:15.914 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:01:15.914 -07 000000437 INF: Autofocus start
17-03-18 07:01:15.914 -07 000000437 INF: MeasureProfile start
17-03-18 07:01:15.914 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:01:15.924 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:01:15.924 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:01:15.924 -07 000000437 INF: MeasureProfile done
17-03-18 07:01:15.924 -07 000000437 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 07:01:15.924 -07 000000437 INF: Autofocus finished
17-03-18 07:01:16.124 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:01:16.124 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:01:16.124 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.13916556622292. ----------
17-03-18 07:01:16.124 -07 000000610 INF: Cycle	156	Tile	3	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:16.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28894, sync = True, waitForSettling = True)
17-03-18 07:01:16.134 -07 000000610 INF: Z Motor: Moving to -0.132268 mm, started at -0.139166 mm, distance = 6.90 um
17-03-18 07:01:16.134 -07 000000610 INF: FPGA: Xmit ZDACW 28894\n [Z Motor]
17-03-18 07:01:16.134 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 07:01:16.144 -07 000000610 INF: FPGA: 'ZDACW 28894' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:01:16.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:16.144 -07 000000585 INF: FPGA: Recv ZDACR 28894
17-03-18 07:01:16.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:16.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:16.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:16.304 -07 000000585 INF: FPGA: Recv ZSGSRD 29887
17-03-18 07:01:16.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:16.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:16.314 -07 000000585 INF: FPGA: Recv ZSGSRD 29881
17-03-18 07:01:16.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:16.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:16.324 -07 000000611 INF: FPGA: Recv ZSGSRD 29880
17-03-18 07:01:16.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:01:16.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:16.334 -07 000000611 INF: FPGA: Recv ZSGSRD 29879
17-03-18 07:01:16.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:16.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:16.344 -07 000000611 INF: FPGA: Recv ZSGSRD 29881
17-03-18 07:01:16.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:16.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:16.354 -07 000000512 INF: FPGA: Recv ZSGSRD 29883
17-03-18 07:01:16.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:16.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:16.364 -07 000000512 INF: FPGA: Recv ZSGSRD 29873
17-03-18 07:01:16.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:16.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:16.374 -07 000000512 INF: FPGA: Recv ZSGSRD 29877
17-03-18 07:01:16.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:16.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:16.384 -07 000000512 INF: FPGA: Recv ZSGSRD 29888
17-03-18 07:01:16.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:16.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:16.394 -07 000000512 INF: FPGA: Recv ZSGSRD 29872
17-03-18 07:01:16.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:16.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:16.404 -07 000000512 INF: FPGA: Recv ZPIEZORD 25378
17-03-18 07:01:16.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:16.414 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.9 V.
17-03-18 07:01:16.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29880 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29880 (-131.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29872 (-131.4 uncal um), Max = 29888 (-131.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:01:16.414 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29880, posNoise = 8, negNoise = 8
17-03-18 07:01:16.414 -07 000000610 INF: Z Motor: After move to -0.132268, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:16.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 07:01:16.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:16.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:16.414 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:16.414 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:16.414 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:16.414 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:16.414 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:16.414 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:16.414 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:16.414 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:16.414 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:01:16.414 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:16.424 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:01:16.424 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:16.424 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:01:16.424 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:16.434 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:01:16.434 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:01:16.434 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 07:01:16.434 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:01:16.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 29071 150\n [Camera]
17-03-18 07:01:16.634 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:16.914 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:01:16.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:01:17.104 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:17.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:17.104 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:17.104 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:17.104 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 07:01:17.104 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:17.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:17.114 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:17.114 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:17.114 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 07:01:17.294 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29071 857
17-03-18 07:01:17.444 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:17.504 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 07:01:17.504 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 07:01:17.504 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:17.514 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:17.514 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 07:01:17.514 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 07:01:17.514 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 07:01:17.514 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:17.514 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:17.524 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 07:01:17.674 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:17.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:17.674 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:17.674 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:17.674 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 07:01:17.674 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:17.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:17.684 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:17.684 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:17.684 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:01:17.864 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:01:17.864 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:17.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 29071 150' command took 2 ms to send, 1428 ms to get response, and 1434 ms overall
17-03-18 07:01:17.874 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.132616
17-03-18 07:01:17.874 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13262 mm
17-03-18 07:01:17.874 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:17.874 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 07:01:17.874 -07 000000012 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 07:01:17.874 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:17.874 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 28970, sync = True, waitForSettling = False)
17-03-18 07:01:17.874 -07 000000501 INF: Z Motor: Moving to -0.132616 mm, started at -0.132279 mm, distance = -0.34 um
17-03-18 07:01:17.874 -07 000000461 INF: FPGA: Recv YRDPOS 126080
17-03-18 07:01:17.884 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:01:17.884 -07 000000501 INF: FPGA: Xmit ZDACW 28970\n [Z Motor]
17-03-18 07:01:17.884 -07 000000012 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:17.884 -07 000000012 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:17.884 -07 000000012 INF: Y Motor: Moving 1344 steps-21
17-03-18 07:01:17.884 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 07:01:17.894 -07 000000501 INF: FPGA: 'ZDACW 28970' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 07:01:17.894 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:17.904 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:17.904 -07 000000461 INF: FPGA: Recv ZDACR 28970
17-03-18 07:01:17.914 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:01:17.914 -07 000000501 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 07:01:18.084 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 07:01:18.084 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 07:01:18.084 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:18.084 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 07:01:18.084 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 07:01:18.084 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:18.084 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:18.084 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 07:01:18.084 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:18.094 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 07:01:18.264 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 07:01:18.264 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 07:01:18.324 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:18.324 -07 000000625 INF: FPGA: Recv YRDPOS 127783
17-03-18 07:01:18.334 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:01:18.334 -07 000000012 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:18.334 -07 000000012 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 07:01:18.334 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.176 mm/sec
17-03-18 07:01:19.284 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:19.284 -07 000000512 INF: FPGA: Recv YRDPOS 127784
17-03-18 07:01:19.294 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:19.294 -07 000000012 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:19.324 -07 000000012 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:19.324 -07 000000012 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:01:19.324 -07 000000012 INF: Y Motor: Moved to 62.3945 after 1456 ms (table move)
17-03-18 07:01:19.334 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132616 mm (DAC = 28970)
17-03-18 07:01:19.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.334 -07 000000461 INF: FPGA: Recv ZSGSRD 29930
17-03-18 07:01:19.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:01:19.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.344 -07 000000606 INF: FPGA: Recv ZSGSRD 29929
17-03-18 07:01:19.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.354 -07 000000474 INF: FPGA: Recv ZSGSRD 29927
17-03-18 07:01:19.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.364 -07 000000606 INF: FPGA: Recv ZSGSRD 29930
17-03-18 07:01:19.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.374 -07 000000474 INF: FPGA: Recv ZSGSRD 29937
17-03-18 07:01:19.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.384 -07 000000611 INF: FPGA: Recv ZSGSRD 29934
17-03-18 07:01:19.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.394 -07 000000606 INF: FPGA: Recv ZSGSRD 29934
17-03-18 07:01:19.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.404 -07 000000606 INF: FPGA: Recv ZSGSRD 29933
17-03-18 07:01:19.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.414 -07 000000606 INF: FPGA: Recv ZSGSRD 29932
17-03-18 07:01:19.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.424 -07 000000606 INF: FPGA: Recv ZSGSRD 29928
17-03-18 07:01:19.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:19.434 -07 000000606 INF: FPGA: Recv ZPIEZORD 25475
17-03-18 07:01:19.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.444 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.421 V. Piezo Error = -9.8 V.
17-03-18 07:01:19.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29931 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29931 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29927 (-131.8 uncal um), Max = 29937 (-131.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:01:19.444 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29931, posNoise = 6, negNoise = 4
17-03-18 07:01:19.444 -07 000000610 INF: Z Motor: After move to -0.132616, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:19.444 -07 000000610 INF: Z Motor: Settle wait time = 1459 ms, measure time = 107 ms (allowed 150 ms), total time = 1566 ms
17-03-18 07:01:19.444 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:19.494 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 07:01:19.494 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:19.494 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.132606445626182. ----------
17-03-18 07:01:19.494 -07 000000610 INF: Cycle	156	Tile	4	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:19.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28793, sync = True, waitForSettling = True)
17-03-18 07:01:19.494 -07 000000610 INF: Z Motor: Moving to -0.131806 mm, started at -0.132606 mm, distance = 0.80 um
17-03-18 07:01:19.494 -07 000000610 INF: FPGA: Xmit ZDACW 28793\n [Z Motor]
17-03-18 07:01:19.494 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 07:01:19.504 -07 000000610 INF: FPGA: 'ZDACW 28793' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:01:19.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:19.504 -07 000000012 INF: FPGA: Recv ZDACR 28793
17-03-18 07:01:19.514 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:19.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.664 -07 000000611 INF: FPGA: Recv ZSGSRD 29808
17-03-18 07:01:19.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:19.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.674 -07 000000606 INF: FPGA: Recv ZSGSRD 29806
17-03-18 07:01:19.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.684 -07 000000461 INF: FPGA: Recv ZSGSRD 29807
17-03-18 07:01:19.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.694 -07 000000461 INF: FPGA: Recv ZSGSRD 29812
17-03-18 07:01:19.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.704 -07 000000461 INF: FPGA: Recv ZSGSRD 29805
17-03-18 07:01:19.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.714 -07 000000576 INF: FPGA: Recv ZSGSRD 29811
17-03-18 07:01:19.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.724 -07 000000576 INF: FPGA: Recv ZSGSRD 29807
17-03-18 07:01:19.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.734 -07 000000461 INF: FPGA: Recv ZSGSRD 29803
17-03-18 07:01:19.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.744 -07 000000461 INF: FPGA: Recv ZSGSRD 29807
17-03-18 07:01:19.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:19.754 -07 000000461 INF: FPGA: Recv ZSGSRD 29803
17-03-18 07:01:19.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:19.764 -07 000000461 INF: FPGA: Recv ZPIEZORD 25311
17-03-18 07:01:19.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:19.774 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.9 V.
17-03-18 07:01:19.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29807 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29807 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29803 (-131.0 uncal um), Max = 29812 (-131.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:01:19.774 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29807, posNoise = 5, negNoise = 4
17-03-18 07:01:19.774 -07 000000610 INF: Z Motor: After move to -0.131806, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:19.774 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:01:19.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:19.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:19.774 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:19.774 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:19.774 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:19.774 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:19.774 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:19.774 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:19.774 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:01:19.774 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:19.774 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:01:19.774 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:19.784 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:01:19.784 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:19.784 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:01:19.784 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:19.794 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 07:01:19.794 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 07:01:19.794 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 07:01:19.794 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 07:01:19.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28970 150\n [Camera]
17-03-18 07:01:19.994 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:20.274 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.981281,
17-03-18 07:01:20.464 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:20.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:20.464 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:20.464 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:20.464 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 07:01:20.474 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:20.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:20.474 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:20.474 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:20.474 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 07:01:20.664 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28970 857
17-03-18 07:01:20.814 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:20.844 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 07:01:20.844 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 07:01:20.844 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:20.844 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 07:01:20.844 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 07:01:20.844 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:20.854 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:20.854 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:20.854 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:01:20.864 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:01:21.034 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:21.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:21.034 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:21.034 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:21.034 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 07:01:21.044 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:21.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:21.044 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:21.044 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:21.044 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 07:01:21.224 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-18 07:01:21.234 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:21.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28970 150' command took 2 ms to send, 1430 ms to get response, and 1434 ms overall
17-03-18 07:01:21.234 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.132359
17-03-18 07:01:21.234 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13236 mm
17-03-18 07:01:21.234 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:21.234 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 07:01:21.234 -07 000000012 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-18 07:01:21.234 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:21.234 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 28914, sync = True, waitForSettling = False)
17-03-18 07:01:21.234 -07 000000576 INF: Z Motor: Moving to -0.132360 mm, started at -0.131810 mm, distance = -0.55 um
17-03-18 07:01:21.234 -07 000000606 INF: FPGA: Recv YRDPOS 127784
17-03-18 07:01:21.244 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:01:21.244 -07 000000012 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:21.244 -07 000000012 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:21.244 -07 000000012 INF: Y Motor: Moving 1341 steps-18
17-03-18 07:01:21.244 -07 000000576 INF: FPGA: Xmit ZDACW 28914\n [Z Motor]
17-03-18 07:01:21.244 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:01:21.254 -07 000000576 INF: FPGA: 'ZDACW 28914' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 07:01:21.254 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:21.264 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:21.264 -07 000000585 INF: FPGA: Recv ZDACR 28914
17-03-18 07:01:21.274 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:01:21.274 -07 000000576 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 07:01:21.444 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 07:01:21.444 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 07:01:21.444 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:21.444 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 07:01:21.444 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 07:01:21.444 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:21.444 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:21.444 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 07:01:21.454 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:01:21.454 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 07:01:21.624 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 07:01:21.624 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 07:01:21.684 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:21.684 -07 000000437 INF: FPGA: Recv YRDPOS 129479
17-03-18 07:01:21.694 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:01:21.694 -07 000000012 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:21.694 -07 000000012 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 07:01:21.694 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-18 07:01:21.914 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:01:21.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:01:22.644 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:22.644 -07 000000611 INF: FPGA: Recv YRDPOS 129479
17-03-18 07:01:22.654 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:22.654 -07 000000012 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:22.684 -07 000000012 INF: Y Motor: After move to 63.232609, error = -0.010441, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:22.684 -07 000000012 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:01:22.684 -07 000000012 INF: Y Motor: Moved to 63.2222 after 1448 ms (table move)
17-03-18 07:01:22.684 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132360 mm (DAC = 28914)
17-03-18 07:01:22.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:22.684 -07 000000012 INF: FPGA: Recv ZSGSRD 29888
17-03-18 07:01:22.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:01:22.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:22.694 -07 000000012 INF: FPGA: Recv ZSGSRD 29895
17-03-18 07:01:22.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:22.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:22.704 -07 000000625 INF: FPGA: Recv ZSGSRD 29896
17-03-18 07:01:22.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:22.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:22.714 -07 000000461 INF: FPGA: Recv ZSGSRD 29899
17-03-18 07:01:22.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:22.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:22.724 -07 000000437 INF: FPGA: Recv ZSGSRD 29891
17-03-18 07:01:22.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:22.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:22.734 -07 000000585 INF: FPGA: Recv ZSGSRD 29889
17-03-18 07:01:22.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:22.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:22.744 -07 000000501 INF: FPGA: Recv ZSGSRD 29892
17-03-18 07:01:22.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:22.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:22.754 -07 000000512 INF: FPGA: Recv ZSGSRD 29891
17-03-18 07:01:22.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:22.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:22.764 -07 000000512 INF: FPGA: Recv ZSGSRD 29894
17-03-18 07:01:22.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:22.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:22.774 -07 000000512 INF: FPGA: Recv ZSGSRD 29895
17-03-18 07:01:22.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:22.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:22.784 -07 000000611 INF: FPGA: Recv ZPIEZORD 25441
17-03-18 07:01:22.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:22.794 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.8 V.
17-03-18 07:01:22.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29893 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29893 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29888 (-131.5 uncal um), Max = 29899 (-131.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:01:22.794 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29893, posNoise = 6, negNoise = 5
17-03-18 07:01:22.794 -07 000000610 INF: Z Motor: After move to -0.132360, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:22.794 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 105 ms (allowed 150 ms), total time = 1555 ms
17-03-18 07:01:22.794 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:22.844 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 07:01:22.844 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:22.844 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22216796875, Z-position -0.132362325564795. ----------
17-03-18 07:01:22.844 -07 000000610 INF: Cycle	156	Tile	5	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:22.844 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28737, sync = True, waitForSettling = True)
17-03-18 07:01:22.844 -07 000000610 INF: Z Motor: Moving to -0.131550 mm, started at -0.132362 mm, distance = 0.81 um
17-03-18 07:01:22.844 -07 000000610 INF: FPGA: Xmit ZDACW 28737\n [Z Motor]
17-03-18 07:01:22.844 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 07:01:22.854 -07 000000610 INF: FPGA: 'ZDACW 28737' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:01:22.854 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:22.854 -07 000000512 INF: FPGA: Recv ZDACR 28737
17-03-18 07:01:22.864 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:22.864 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:23.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:23.014 -07 000000501 INF: FPGA: Recv ZSGSRD 29771
17-03-18 07:01:23.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:23.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:23.024 -07 000000461 INF: FPGA: Recv ZSGSRD 29769
17-03-18 07:01:23.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:23.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:23.034 -07 000000606 INF: FPGA: Recv ZSGSRD 29766
17-03-18 07:01:23.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:23.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:23.044 -07 000000501 INF: FPGA: Recv ZSGSRD 29765
17-03-18 07:01:23.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:23.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:23.054 -07 000000501 INF: FPGA: Recv ZSGSRD 29766
17-03-18 07:01:23.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:23.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:23.064 -07 000000501 INF: FPGA: Recv ZSGSRD 29764
17-03-18 07:01:23.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:23.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:23.074 -07 000000501 INF: FPGA: Recv ZSGSRD 29766
17-03-18 07:01:23.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:23.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:23.084 -07 000000576 INF: FPGA: Recv ZSGSRD 29773
17-03-18 07:01:23.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:23.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:23.094 -07 000000512 INF: FPGA: Recv ZSGSRD 29771
17-03-18 07:01:23.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:23.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:23.104 -07 000000512 INF: FPGA: Recv ZSGSRD 29763
17-03-18 07:01:23.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:23.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:23.114 -07 000000512 INF: FPGA: Recv ZPIEZORD 25281
17-03-18 07:01:23.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:23.124 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.385 V. Piezo Error = -9.8 V.
17-03-18 07:01:23.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29767 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29766 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29763 (-130.7 uncal um), Max = 29773 (-130.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:01:23.124 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29767, posNoise = 6, negNoise = 4
17-03-18 07:01:23.124 -07 000000610 INF: Z Motor: After move to -0.131550, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:23.124 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 07:01:23.124 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:23.124 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:23.124 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:23.124 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:23.124 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:23.124 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:23.124 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:01:23.124 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:23.124 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:23.124 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:23.124 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:01:23.124 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:23.134 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 07:01:23.134 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:23.134 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:01:23.134 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:23.144 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 07:01:23.144 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:01:23.144 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 07:01:23.144 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 07:01:23.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28914 150\n [Camera]
17-03-18 07:01:23.344 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:23.814 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:23.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:23.824 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:23.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:23.824 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:23.824 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:23.824 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 07:01:23.824 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:23.824 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:23.824 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 07:01:24.014 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28914 857
17-03-18 07:01:24.164 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1008
17-03-18 07:01:24.194 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 07:01:24.194 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 07:01:24.194 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 07:01:24.194 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:24.194 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 07:01:24.194 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:24.204 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:01:24.204 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:01:24.204 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:01:24.214 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 07:01:24.384 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:24.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:24.384 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:24.384 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:24.384 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 07:01:24.394 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:24.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:24.394 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:24.394 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:24.394 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 07:01:24.574 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:01:24.584 -07 000000625 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:24.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28914 150' command took 2 ms to send, 1430 ms to get response, and 1434 ms overall
17-03-18 07:01:24.584 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.131987
17-03-18 07:01:24.584 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13199 mm
17-03-18 07:01:24.584 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:24.584 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 07:01:24.584 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 28833, sync = True, waitForSettling = False)
17-03-18 07:01:24.584 -07 000000012 INF: Z Motor: Moving to -0.131989 mm, started at -0.131553 mm, distance = -0.44 um
17-03-18 07:01:24.584 -07 000000012 INF: FPGA: Xmit ZDACW 28833\n [Z Motor]
17-03-18 07:01:24.584 -07 000000606 INF: Y Motor: Moving to 64.0626 mm, started at 63.2222 mm, delta = 0.8404 mm
17-03-18 07:01:24.594 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:24.594 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:01:24.594 -07 000000012 INF: FPGA: 'ZDACW 28833' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:01:24.594 -07 000000585 INF: FPGA: Recv YRDPOS 129479
17-03-18 07:01:24.604 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 07:01:24.604 -07 000000606 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:24.604 -07 000000606 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:24.604 -07 000000606 INF: Y Motor: Moving 1345 steps-21
17-03-18 07:01:24.604 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:24.604 -07 000000501 INF: FPGA: Recv ZDACR 28833
17-03-18 07:01:24.614 -07 000000012 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:01:24.614 -07 000000012 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 07:01:24.614 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:24.764 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 07:01:24.764 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:01:24.764 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:24.774 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 07:01:24.774 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 07:01:24.774 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:24.774 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:24.774 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:01:24.774 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:24.784 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 07:01:24.984 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-18 07:01:24.984 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 07:01:25.044 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:25.044 -07 000000541 INF: FPGA: Recv YRDPOS 131186
17-03-18 07:01:25.054 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:01:25.054 -07 000000606 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:25.054 -07 000000606 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 07:01:25.054 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.166 mm/sec
17-03-18 07:01:25.634 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.983999,
17-03-18 07:01:26.004 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:26.004 -07 000000461 INF: FPGA: Recv YRDPOS 131186
17-03-18 07:01:26.014 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.014 -07 000000606 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:26.044 -07 000000606 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:26.044 -07 000000606 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:01:26.044 -07 000000606 INF: Y Motor: Moved to 64.0557 after 1456 ms (table move)
17-03-18 07:01:26.044 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131989 mm (DAC = 28833)
17-03-18 07:01:26.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.044 -07 000000461 INF: FPGA: Recv ZSGSRD 29836
17-03-18 07:01:26.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:01:26.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.054 -07 000000606 INF: FPGA: Recv ZSGSRD 29837
17-03-18 07:01:26.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.064 -07 000000461 INF: FPGA: Recv ZSGSRD 29832
17-03-18 07:01:26.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.074 -07 000000606 INF: FPGA: Recv ZSGSRD 29834
17-03-18 07:01:26.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.084 -07 000000461 INF: FPGA: Recv ZSGSRD 29836
17-03-18 07:01:26.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.094 -07 000000606 INF: FPGA: Recv ZSGSRD 29838
17-03-18 07:01:26.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.104 -07 000000512 INF: FPGA: Recv ZSGSRD 29836
17-03-18 07:01:26.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.114 -07 000000606 INF: FPGA: Recv ZSGSRD 29839
17-03-18 07:01:26.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.124 -07 000000461 INF: FPGA: Recv ZSGSRD 29837
17-03-18 07:01:26.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.134 -07 000000606 INF: FPGA: Recv ZSGSRD 29836
17-03-18 07:01:26.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:26.144 -07 000000012 INF: FPGA: Recv ZPIEZORD 25379
17-03-18 07:01:26.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.154 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.400 V. Piezo Error = -9.8 V.
17-03-18 07:01:26.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29836 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29836 (-131.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29832 (-131.2 uncal um), Max = 29839 (-131.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:01:26.154 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29836, posNoise = 3, negNoise = 4
17-03-18 07:01:26.154 -07 000000610 INF: Z Motor: After move to -0.131989, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:26.154 -07 000000610 INF: Z Motor: Settle wait time = 1461 ms, measure time = 104 ms (allowed 150 ms), total time = 1565 ms
17-03-18 07:01:26.154 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:26.204 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 07:01:26.204 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:26.204 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.131996145472715. ----------
17-03-18 07:01:26.204 -07 000000610 INF: Cycle	156	Tile	6	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:26.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28656, sync = True, waitForSettling = True)
17-03-18 07:01:26.204 -07 000000610 INF: Z Motor: Moving to -0.131179 mm, started at -0.131996 mm, distance = 0.82 um
17-03-18 07:01:26.224 -07 000000610 INF: FPGA: Xmit ZDACW 28656\n [Z Motor]
17-03-18 07:01:26.224 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:01:26.234 -07 000000610 INF: FPGA: 'ZDACW 28656' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 07:01:26.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:26.234 -07 000000611 INF: FPGA: Recv ZDACR 28656
17-03-18 07:01:26.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:26.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.394 -07 000000461 INF: FPGA: Recv ZSGSRD 29710
17-03-18 07:01:26.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:26.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.404 -07 000000606 INF: FPGA: Recv ZSGSRD 29716
17-03-18 07:01:26.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.414 -07 000000461 INF: FPGA: Recv ZSGSRD 29710
17-03-18 07:01:26.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.424 -07 000000606 INF: FPGA: Recv ZSGSRD 29714
17-03-18 07:01:26.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.434 -07 000000461 INF: FPGA: Recv ZSGSRD 29710
17-03-18 07:01:26.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.444 -07 000000606 INF: FPGA: Recv ZSGSRD 29711
17-03-18 07:01:26.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.454 -07 000000461 INF: FPGA: Recv ZSGSRD 29706
17-03-18 07:01:26.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.464 -07 000000606 INF: FPGA: Recv ZSGSRD 29714
17-03-18 07:01:26.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.474 -07 000000012 INF: FPGA: Recv ZSGSRD 29710
17-03-18 07:01:26.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:26.484 -07 000000606 INF: FPGA: Recv ZSGSRD 29703
17-03-18 07:01:26.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:26.494 -07 000000012 INF: FPGA: Recv ZPIEZORD 25209
17-03-18 07:01:26.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:26.504 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -9.9 V.
17-03-18 07:01:26.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29710 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29710 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29703 (-130.4 uncal um), Max = 29716 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:01:26.504 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29710, posNoise = 6, negNoise = 7
17-03-18 07:01:26.504 -07 000000610 INF: Z Motor: After move to -0.131179, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:26.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 295 ms)
17-03-18 07:01:26.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:26.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:26.504 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:26.504 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:26.504 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:26.504 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:26.504 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:26.504 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:26.504 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:26.504 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 07:01:26.504 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:26.504 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:26.514 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:01:26.514 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:26.514 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 07:01:26.514 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:26.524 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:01:26.524 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 07:01:26.524 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:01:26.524 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 07:01:26.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28833 150\n [Camera]
17-03-18 07:01:26.734 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:26.914 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:01:26.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:01:27.204 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:27.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:27.204 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:27.204 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:27.204 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 07:01:27.204 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:27.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:27.204 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:27.204 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:27.204 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 07:01:27.394 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28833 857
17-03-18 07:01:27.544 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:27.584 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 07:01:27.584 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 07:01:27.584 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:27.584 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 07:01:27.584 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 07:01:27.584 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:27.584 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:27.584 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 07:01:27.584 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:27.594 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 07:01:27.774 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:27.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:27.774 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:27.774 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:27.774 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 07:01:27.774 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:27.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:27.774 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:27.774 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:27.774 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 07:01:27.964 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-18 07:01:27.964 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:27.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28833 150' command took 2 ms to send, 1427 ms to get response, and 1436 ms overall
17-03-18 07:01:27.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 07:01:27.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.131186694742853. ------
17-03-18 07:01:27.974 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:01:27.974 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13783 mm
17-03-18 07:01:27.974 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:27.974 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 07:01:27.974 -07 000000606 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 07:01:27.974 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:01:27.974 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 30108, sync = True, waitForSettling = False)
17-03-18 07:01:27.974 -07 000000611 INF: Z Motor: Moving to -0.137826 mm, started at -0.131187 mm, distance = -6.64 um
17-03-18 07:01:27.984 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:27.984 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:01:27.984 -07 000000474 INF: FPGA: Recv YRDPOS 131186
17-03-18 07:01:27.994 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 07:01:27.994 -07 000000606 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:27.994 -07 000000606 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:27.994 -07 000000606 INF: Y Motor: Moving 1339 steps-14
17-03-18 07:01:27.994 -07 000000611 INF: FPGA: Xmit ZDACW 30108\n [Z Motor]
17-03-18 07:01:27.994 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 07:01:28.004 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:01:28.004 -07 000000611 INF: FPGA: 'ZDACW 30108' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 07:01:28.014 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:28.024 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:28.024 -07 000000501 INF: FPGA: Recv ZDACR 30108
17-03-18 07:01:28.034 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 07:01:28.034 -07 000000611 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 07:01:28.154 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 07:01:28.154 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 07:01:28.154 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:28.154 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:01:28.154 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 07:01:28.154 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:28.164 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:01:28.164 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:01:28.164 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:01:28.174 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 07:01:28.204 -07 000000625 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:01:28.204 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 07:01:28.384 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 07:01:28.384 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:01:28.454 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:28.464 -07 000000585 INF: FPGA: Recv YRDPOS 132869
17-03-18 07:01:28.464 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 07:01:28.464 -07 000000606 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:28.464 -07 000000606 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 07:01:28.464 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-18 07:01:29.414 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:29.414 -07 000000501 INF: FPGA: Recv YRDPOS 132869
17-03-18 07:01:29.424 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:29.424 -07 000000606 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:29.454 -07 000000606 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:29.454 -07 000000606 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:01:29.454 -07 000000606 INF: Y Motor: Moved to 64.8774 after 1478 ms (table move)
17-03-18 07:01:29.454 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137826 mm (DAC = 30108)
17-03-18 07:01:29.454 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:29.464 -07 000000474 INF: FPGA: Recv ZSGSRD 30749
17-03-18 07:01:29.464 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:01:29.464 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:29.464 -07 000000625 INF: FPGA: Recv ZSGSRD 30739
17-03-18 07:01:29.474 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:01:29.474 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:29.474 -07 000000501 INF: FPGA: Recv ZSGSRD 30738
17-03-18 07:01:29.484 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:29.484 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:29.484 -07 000000437 INF: FPGA: Recv ZSGSRD 30740
17-03-18 07:01:29.494 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:29.494 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:29.494 -07 000000585 INF: FPGA: Recv ZSGSRD 30738
17-03-18 07:01:29.504 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:29.504 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:29.504 -07 000000585 INF: FPGA: Recv ZSGSRD 30745
17-03-18 07:01:29.514 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:29.514 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:29.514 -07 000000606 INF: FPGA: Recv ZSGSRD 30746
17-03-18 07:01:29.524 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:29.524 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:29.524 -07 000000611 INF: FPGA: Recv ZSGSRD 30742
17-03-18 07:01:29.534 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:29.534 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:29.534 -07 000000625 INF: FPGA: Recv ZSGSRD 30751
17-03-18 07:01:29.544 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:29.544 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:29.544 -07 000000501 INF: FPGA: Recv ZSGSRD 30743
17-03-18 07:01:29.554 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:29.554 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:29.554 -07 000000606 INF: FPGA: Recv ZPIEZORD 26564
17-03-18 07:01:29.564 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:29.564 -07 000000512 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -9.2 V.
17-03-18 07:01:29.564 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30743 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30742 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30738 (-137.0 uncal um), Max = 30751 (-137.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:01:29.564 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30743, posNoise = 8, negNoise = 5
17-03-18 07:01:29.564 -07 000000512 INF: Z Motor: After move to -0.137826, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:29.564 -07 000000512 INF: Z Motor: Settle wait time = 1482 ms, measure time = 102 ms (allowed 150 ms), total time = 1584 ms
17-03-18 07:01:29.564 -07 000000512 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:29.614 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 07:01:29.614 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:29.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:29.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:29.614 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:29.614 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:29.614 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:01:29.614 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:29.614 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:29.614 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:01:29.624 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 07:01:29.624 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:01:29.634 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 07:01:29.634 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 07:01:29.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:01:29.684 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:01:29.984 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:01:29.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:01:29.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:01:29.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 579324120, 0x0, 559484976) start.
17-03-18 07:01:30.024 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:01:30.024 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 07:01:30.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 07:01:30.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 579324120, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 07:01:30.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:30.114 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 07:01:30.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 07:01:30.124 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:01:30.124 -07 000000437 INF: Autofocus start
17-03-18 07:01:30.124 -07 000000437 INF: MeasureProfile start
17-03-18 07:01:30.124 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:01:30.134 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:01:30.134 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:01:30.144 -07 000000437 INF: MeasureProfile done
17-03-18 07:01:30.144 -07 000000437 INF: X=-48  Z correction [um]=-0.2370583
17-03-18 07:01:30.144 -07 000000437 INF: Autofocus finished
17-03-18 07:01:30.334 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:01:30.334 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:01:30.334 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.137822905885292. ----------
17-03-18 07:01:30.344 -07 000000610 INF: Cycle	156	Tile	7	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:30.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28569, sync = True, waitForSettling = True)
17-03-18 07:01:30.344 -07 000000610 INF: Z Motor: Moving to -0.130780 mm, started at -0.137823 mm, distance = 7.04 um
17-03-18 07:01:30.344 -07 000000610 INF: FPGA: Xmit ZDACW 28569\n [Z Motor]
17-03-18 07:01:30.344 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 07:01:30.354 -07 000000610 INF: FPGA: 'ZDACW 28569' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:01:30.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:30.354 -07 000000437 INF: FPGA: Recv ZDACR 28569
17-03-18 07:01:30.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:30.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:30.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:30.514 -07 000000625 INF: FPGA: Recv ZSGSRD 29647
17-03-18 07:01:30.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:30.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:30.524 -07 000000625 INF: FPGA: Recv ZSGSRD 29650
17-03-18 07:01:30.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:30.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:30.534 -07 000000611 INF: FPGA: Recv ZSGSRD 29644
17-03-18 07:01:30.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:30.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:30.544 -07 000000611 INF: FPGA: Recv ZSGSRD 29642
17-03-18 07:01:30.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:30.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:30.554 -07 000000611 INF: FPGA: Recv ZSGSRD 29649
17-03-18 07:01:30.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:30.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:30.564 -07 000000585 INF: FPGA: Recv ZSGSRD 29648
17-03-18 07:01:30.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:30.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:30.574 -07 000000611 INF: FPGA: Recv ZSGSRD 29645
17-03-18 07:01:30.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:30.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:30.584 -07 000000474 INF: FPGA: Recv ZSGSRD 29647
17-03-18 07:01:30.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:30.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:30.594 -07 000000625 INF: FPGA: Recv ZSGSRD 29645
17-03-18 07:01:30.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:30.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:30.604 -07 000000474 INF: FPGA: Recv ZSGSRD 29653
17-03-18 07:01:30.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:30.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:30.614 -07 000000625 INF: FPGA: Recv ZPIEZORD 25121
17-03-18 07:01:30.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:30.624 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -9.9 V.
17-03-18 07:01:30.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29647 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29647 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29642 (-130.0 uncal um), Max = 29653 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:01:30.624 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29647, posNoise = 6, negNoise = 5
17-03-18 07:01:30.624 -07 000000610 INF: Z Motor: After move to -0.130780, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:30.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 07:01:30.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:30.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:30.624 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:30.624 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:30.624 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:30.624 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:30.624 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:30.624 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:30.624 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:30.624 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:30.624 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:01:30.624 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:30.634 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:01:30.634 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:30.634 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:01:30.634 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:30.634 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 07:01:30.634 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 07:01:30.644 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 07:01:30.644 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 07:01:30.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28746 150\n [Camera]
17-03-18 07:01:30.844 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:30.994 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.988112,
17-03-18 07:01:31.314 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:31.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:31.314 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:31.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:31.314 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:31.314 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:31.314 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-18 07:01:31.324 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:31.324 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:31.324 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-18 07:01:31.504 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28746 857
17-03-18 07:01:31.664 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:31.704 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 07:01:31.704 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 07:01:31.704 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:31.704 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 07:01:31.704 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 07:01:31.704 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:31.704 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:31.704 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:31.704 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:01:31.714 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 07:01:31.884 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:31.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:31.884 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:31.884 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:31.884 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-18 07:01:31.884 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:31.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:31.884 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:32.044 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:01:32.044 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:01:32.054 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:32.054 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 07:01:32.074 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:01:32.074 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:32.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28746 150' command took 2 ms to send, 1427 ms to get response, and 1433 ms overall
17-03-18 07:01:32.074 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.131476
17-03-18 07:01:32.084 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13148 mm
17-03-18 07:01:32.084 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:32.084 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 07:01:32.084 -07 000000606 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 07:01:32.084 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:32.084 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 28721, sync = True, waitForSettling = False)
17-03-18 07:01:32.084 -07 000000585 INF: Z Motor: Moving to -0.131476 mm, started at -0.130782 mm, distance = -0.69 um
17-03-18 07:01:32.084 -07 000000561 INF: FPGA: Recv YRDPOS 132870
17-03-18 07:01:32.094 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:01:32.094 -07 000000606 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:32.094 -07 000000585 INF: FPGA: Xmit ZDACW 28721\n [Z Motor]
17-03-18 07:01:32.094 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 07:01:32.094 -07 000000606 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:32.094 -07 000000606 INF: Y Motor: Moving 1351 steps-31
17-03-18 07:01:32.104 -07 000000585 INF: FPGA: 'ZDACW 28721' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 07:01:32.104 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:32.104 -07 000000501 INF: FPGA: Recv ZDACR 28721
17-03-18 07:01:32.114 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:32.114 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:32.114 -07 000000585 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 07:01:32.304 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 416 ms.
17-03-18 07:01:32.304 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 07:01:32.304 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:32.304 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:01:32.304 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 422 ms.
17-03-18 07:01:32.444 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 07:01:32.444 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 07:01:32.444 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:32.444 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 07:01:32.454 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 561 ms.
17-03-18 07:01:32.484 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 07:01:32.484 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 07:01:32.544 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:32.544 -07 000000561 INF: FPGA: Recv YRDPOS 134580
17-03-18 07:01:32.554 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:32.554 -07 000000606 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:32.554 -07 000000606 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 07:01:32.554 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 07:01:33.504 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:33.504 -07 000000541 INF: FPGA: Recv YRDPOS 134580
17-03-18 07:01:33.514 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:33.514 -07 000000606 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:33.554 -07 000000606 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:33.554 -07 000000606 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:01:33.554 -07 000000606 INF: Y Motor: Moved to 65.7129 after 1469 ms (table move)
17-03-18 07:01:33.554 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131476 mm (DAC = 28721)
17-03-18 07:01:33.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.554 -07 000000611 INF: FPGA: Recv ZSGSRD 29755
17-03-18 07:01:33.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:01:33.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.564 -07 000000501 INF: FPGA: Recv ZSGSRD 29746
17-03-18 07:01:33.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.574 -07 000000541 INF: FPGA: Recv ZSGSRD 29752
17-03-18 07:01:33.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.584 -07 000000611 INF: FPGA: Recv ZSGSRD 29751
17-03-18 07:01:33.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.594 -07 000000501 INF: FPGA: Recv ZSGSRD 29755
17-03-18 07:01:33.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.604 -07 000000541 INF: FPGA: Recv ZSGSRD 29760
17-03-18 07:01:33.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.614 -07 000000611 INF: FPGA: Recv ZSGSRD 29762
17-03-18 07:01:33.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.624 -07 000000501 INF: FPGA: Recv ZSGSRD 29762
17-03-18 07:01:33.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.634 -07 000000541 INF: FPGA: Recv ZSGSRD 29753
17-03-18 07:01:33.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.644 -07 000000611 INF: FPGA: Recv ZSGSRD 29751
17-03-18 07:01:33.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:33.654 -07 000000541 INF: FPGA: Recv ZPIEZORD 25315
17-03-18 07:01:33.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.664 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.383 V. Piezo Error = -9.7 V.
17-03-18 07:01:33.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29755 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29754 (-130.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29746 (-130.6 uncal um), Max = 29762 (-130.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 07:01:33.664 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29755, posNoise = 7, negNoise = 9
17-03-18 07:01:33.664 -07 000000610 INF: Z Motor: After move to -0.131476, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:33.664 -07 000000610 INF: Z Motor: Settle wait time = 1471 ms, measure time = 105 ms (allowed 150 ms), total time = 1576 ms
17-03-18 07:01:33.664 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:33.714 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 07:01:33.714 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:33.714 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.131475784289232. ----------
17-03-18 07:01:33.714 -07 000000610 INF: Cycle	156	Tile	8	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:33.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28544, sync = True, waitForSettling = True)
17-03-18 07:01:33.714 -07 000000610 INF: Z Motor: Moving to -0.130666 mm, started at -0.131476 mm, distance = 0.81 um
17-03-18 07:01:33.714 -07 000000610 INF: FPGA: Xmit ZDACW 28544\n [Z Motor]
17-03-18 07:01:33.714 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 07:01:33.724 -07 000000610 INF: FPGA: 'ZDACW 28544' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:01:33.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:33.724 -07 000000541 INF: FPGA: Recv ZDACR 28544
17-03-18 07:01:33.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:33.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.884 -07 000000611 INF: FPGA: Recv ZSGSRD 29626
17-03-18 07:01:33.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:33.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.894 -07 000000606 INF: FPGA: Recv ZSGSRD 29626
17-03-18 07:01:33.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.904 -07 000000501 INF: FPGA: Recv ZSGSRD 29634
17-03-18 07:01:33.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.914 -07 000000541 INF: FPGA: Recv ZSGSRD 29628
17-03-18 07:01:33.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.924 -07 000000606 INF: FPGA: Recv ZSGSRD 29631
17-03-18 07:01:33.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.934 -07 000000501 INF: FPGA: Recv ZSGSRD 29633
17-03-18 07:01:33.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.944 -07 000000541 INF: FPGA: Recv ZSGSRD 29632
17-03-18 07:01:33.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.954 -07 000000474 INF: FPGA: Recv ZSGSRD 29627
17-03-18 07:01:33.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.964 -07 000000606 INF: FPGA: Recv ZSGSRD 29630
17-03-18 07:01:33.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:33.974 -07 000000606 INF: FPGA: Recv ZSGSRD 29629
17-03-18 07:01:33.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:33.984 -07 000000474 INF: FPGA: Recv ZPIEZORD 25149
17-03-18 07:01:33.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:33.994 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -9.8 V.
17-03-18 07:01:33.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29630 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29630 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29626 (-129.9 uncal um), Max = 29634 (-129.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:01:33.994 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29630, posNoise = 4, negNoise = 4
17-03-18 07:01:33.994 -07 000000610 INF: Z Motor: After move to -0.130666, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:33.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:01:33.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:33.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:33.994 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:33.994 -07 000000585 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:33.994 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:33.994 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:33.994 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:33.994 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:33.994 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:01:33.994 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 07:01:33.994 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:33.994 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:34.004 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:01:34.004 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:34.004 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:01:34.004 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:34.014 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 07:01:34.014 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 07:01:34.014 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 07:01:34.014 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:01:34.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28721 150\n [Camera]
17-03-18 07:01:34.214 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:34.684 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:34.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:34.684 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:34.684 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:34.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:34.684 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:34.684 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:34.684 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 07:01:34.694 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:34.694 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 07:01:34.874 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28721 857
17-03-18 07:01:35.024 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:35.064 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 07:01:35.064 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 07:01:35.064 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:35.064 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 07:01:35.064 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 07:01:35.064 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:35.064 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:35.064 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:01:35.074 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:35.074 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:01:35.254 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:35.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:35.254 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:35.254 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:35.254 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2571421344, 0x0, 391868352) start.
17-03-18 07:01:35.254 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:35.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:35.264 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:35.264 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:35.264 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2606843608, 0x0, 418435064) start.
17-03-18 07:01:35.444 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-18 07:01:35.444 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:35.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28721 150' command took 2 ms to send, 1426 ms to get response, and 1434 ms overall
17-03-18 07:01:35.444 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.130962
17-03-18 07:01:35.444 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13096 mm
17-03-18 07:01:35.444 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:35.454 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 07:01:35.454 -07 000000501 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 07:01:35.454 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:35.454 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 28609, sync = True, waitForSettling = False)
17-03-18 07:01:35.454 -07 000000437 INF: Z Motor: Moving to -0.130964 mm, started at -0.130673 mm, distance = -0.29 um
17-03-18 07:01:35.454 -07 000000606 INF: FPGA: Recv YRDPOS 134580
17-03-18 07:01:35.464 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:35.464 -07 000000501 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:35.464 -07 000000501 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:35.464 -07 000000501 INF: Y Motor: Moving 1344 steps-20
17-03-18 07:01:35.464 -07 000000437 INF: FPGA: Xmit ZDACW 28609\n [Z Motor]
17-03-18 07:01:35.464 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 07:01:35.474 -07 000000437 INF: FPGA: 'ZDACW 28609' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 07:01:35.474 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:35.474 -07 000000585 INF: FPGA: Recv ZDACR 28609
17-03-18 07:01:35.484 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:35.484 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:35.484 -07 000000437 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 07:01:35.654 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2571421344, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 07:01:35.654 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 07:01:35.654 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:35.654 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2606843608, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 07:01:35.654 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 07:01:35.654 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:35.654 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:35.654 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 07:01:35.664 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:35.664 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 07:01:35.854 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 07:01:35.854 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:01:35.914 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:35.914 -07 000000585 INF: FPGA: Recv YRDPOS 136270
17-03-18 07:01:35.924 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:35.924 -07 000000501 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:35.924 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 07:01:35.924 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 07:01:36.354 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.986717,
17-03-18 07:01:36.874 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:36.874 -07 000000606 INF: FPGA: Recv YRDPOS 136270
17-03-18 07:01:36.884 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:36.884 -07 000000501 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:36.914 -07 000000501 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:36.914 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:01:36.914 -07 000000501 INF: Y Motor: Moved to 66.5381 after 1464 ms (table move)
17-03-18 07:01:36.914 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:01:36.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:01:36.914 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130964 mm (DAC = 28609)
17-03-18 07:01:36.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:36.924 -07 000000541 INF: FPGA: Recv ZSGSRD 29675
17-03-18 07:01:36.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 07:01:36.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:36.924 -07 000000437 INF: FPGA: Recv ZSGSRD 29678
17-03-18 07:01:36.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:01:36.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:36.944 -07 000000611 INF: FPGA: Recv ZSGSRD 29669
17-03-18 07:01:36.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:01:36.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:36.954 -07 000000512 INF: FPGA: Recv ZSGSRD 29673
17-03-18 07:01:36.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:36.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:36.984 -07 000000480 INF: FPGA: Recv ZSGSRD 29679
17-03-18 07:01:36.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:01:37.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.014 -07 000000512 INF: FPGA: Recv ZSGSRD 29672
17-03-18 07:01:37.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 07:01:37.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.024 -07 000000480 INF: FPGA: Recv ZSGSRD 29676
17-03-18 07:01:37.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.034 -07 000000576 INF: FPGA: Recv ZSGSRD 29669
17-03-18 07:01:37.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.044 -07 000000611 INF: FPGA: Recv ZSGSRD 29670
17-03-18 07:01:37.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.054 -07 000000512 INF: FPGA: Recv ZSGSRD 29680
17-03-18 07:01:37.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:37.064 -07 000000501 INF: FPGA: Recv ZPIEZORD 25215
17-03-18 07:01:37.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.074 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -9.8 V.
17-03-18 07:01:37.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29674 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29674 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29669 (-130.1 uncal um), Max = 29680 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:01:37.074 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29674, posNoise = 6, negNoise = 5
17-03-18 07:01:37.074 -07 000000610 INF: Z Motor: After move to -0.130964, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:37.074 -07 000000610 INF: Z Motor: Settle wait time = 1466 ms, measure time = 152 ms (allowed 150 ms), total time = 1618 ms
17-03-18 07:01:37.074 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 152 ms, longer than max expected time of 150 ms
17-03-18 07:01:37.074 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 07:01:37.074 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:37.074 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.13095542310575. ----------
17-03-18 07:01:37.074 -07 000000610 INF: Cycle	156	Tile	9	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:37.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28432, sync = True, waitForSettling = True)
17-03-18 07:01:37.074 -07 000000610 INF: Z Motor: Moving to -0.130153 mm, started at -0.130955 mm, distance = 0.80 um
17-03-18 07:01:37.074 -07 000000610 INF: FPGA: Xmit ZDACW 28432\n [Z Motor]
17-03-18 07:01:37.074 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:01:37.084 -07 000000610 INF: FPGA: 'ZDACW 28432' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:01:37.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:37.084 -07 000000541 INF: FPGA: Recv ZDACR 28432
17-03-18 07:01:37.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:37.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.244 -07 000000437 INF: FPGA: Recv ZSGSRD 29549
17-03-18 07:01:37.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.254 -07 000000437 INF: FPGA: Recv ZSGSRD 29560
17-03-18 07:01:37.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.264 -07 000000437 INF: FPGA: Recv ZSGSRD 29546
17-03-18 07:01:37.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.274 -07 000000576 INF: FPGA: Recv ZSGSRD 29545
17-03-18 07:01:37.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.284 -07 000000541 INF: FPGA: Recv ZSGSRD 29549
17-03-18 07:01:37.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.294 -07 000000541 INF: FPGA: Recv ZSGSRD 29549
17-03-18 07:01:37.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.304 -07 000000611 INF: FPGA: Recv ZSGSRD 29551
17-03-18 07:01:37.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.314 -07 000000611 INF: FPGA: Recv ZSGSRD 29548
17-03-18 07:01:37.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.324 -07 000000611 INF: FPGA: Recv ZSGSRD 29550
17-03-18 07:01:37.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:37.334 -07 000000611 INF: FPGA: Recv ZSGSRD 29552
17-03-18 07:01:37.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:37.344 -07 000000611 INF: FPGA: Recv ZPIEZORD 25071
17-03-18 07:01:37.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:37.354 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -9.8 V.
17-03-18 07:01:37.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29550 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29549 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29545 (-129.3 uncal um), Max = 29560 (-129.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:01:37.354 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29550, posNoise = 10, negNoise = 5
17-03-18 07:01:37.354 -07 000000610 INF: Z Motor: After move to -0.130153, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:37.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 07:01:37.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:37.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:37.354 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:37.354 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:37.354 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:37.354 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:37.354 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:37.354 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:37.354 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:37.354 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:37.354 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:01:37.354 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:37.364 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 07:01:37.364 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:37.364 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:01:37.364 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:37.374 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 07:01:37.374 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:01:37.374 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 07:01:37.374 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 07:01:37.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28609 150\n [Camera]
17-03-18 07:01:37.574 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:38.044 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:38.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:38.044 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:38.054 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:38.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:38.054 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:38.054 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:38.054 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:01:38.054 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:38.054 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 07:01:38.234 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28609 857
17-03-18 07:01:38.384 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:38.434 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 07:01:38.434 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:01:38.434 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:38.444 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 07:01:38.444 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 07:01:38.444 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:38.444 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 07:01:38.444 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:38.444 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:38.454 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 07:01:38.614 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:38.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:38.614 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:38.614 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:38.614 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 07:01:38.614 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:38.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:38.624 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:38.624 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:38.624 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:01:38.804 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:01:38.804 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:38.804 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28609 150' command took 2 ms to send, 1428 ms to get response, and 1433 ms overall
17-03-18 07:01:38.814 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131030
17-03-18 07:01:38.814 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13103 mm
17-03-18 07:01:38.814 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:38.814 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 07:01:38.814 -07 000000606 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 07:01:38.814 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:38.814 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 28623, sync = True, waitForSettling = False)
17-03-18 07:01:38.814 -07 000000611 INF: Z Motor: Moving to -0.131028 mm, started at -0.130159 mm, distance = -0.87 um
17-03-18 07:01:38.814 -07 000000585 INF: FPGA: Recv YRDPOS 136270
17-03-18 07:01:38.824 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:01:38.824 -07 000000606 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:38.824 -07 000000606 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:38.824 -07 000000606 INF: Y Motor: Moving 1351 steps-30
17-03-18 07:01:38.824 -07 000000611 INF: FPGA: Xmit ZDACW 28623\n [Z Motor]
17-03-18 07:01:38.824 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 07:01:38.834 -07 000000611 INF: FPGA: 'ZDACW 28623' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 07:01:38.834 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:38.834 -07 000000541 INF: FPGA: Recv ZDACR 28623
17-03-18 07:01:38.844 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:38.844 -07 000000611 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 07:01:38.844 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:39.004 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 07:01:39.004 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 07:01:39.004 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:39.014 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:01:39.014 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 07:01:39.014 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 07:01:39.014 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 07:01:39.014 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:39.024 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:01:39.024 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 07:01:39.214 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 07:01:39.214 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:01:39.274 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:39.274 -07 000000512 INF: FPGA: Recv YRDPOS 137975
17-03-18 07:01:39.284 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:01:39.284 -07 000000606 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:39.284 -07 000000606 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 07:01:39.284 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.122 mm/sec
17-03-18 07:01:40.234 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:40.234 -07 000000012 INF: FPGA: Recv YRDPOS 137976
17-03-18 07:01:40.244 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:40.244 -07 000000606 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:40.274 -07 000000606 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:40.274 -07 000000606 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:01:40.274 -07 000000606 INF: Y Motor: Moved to 67.3711 after 1459 ms (table move)
17-03-18 07:01:40.274 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131028 mm (DAC = 28623)
17-03-18 07:01:40.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.284 -07 000000606 INF: FPGA: Recv ZSGSRD 29687
17-03-18 07:01:40.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:01:40.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.284 -07 000000585 INF: FPGA: Recv ZSGSRD 29688
17-03-18 07:01:40.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.294 -07 000000585 INF: FPGA: Recv ZSGSRD 29683
17-03-18 07:01:40.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.304 -07 000000585 INF: FPGA: Recv ZSGSRD 29678
17-03-18 07:01:40.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.314 -07 000000585 INF: FPGA: Recv ZSGSRD 29681
17-03-18 07:01:40.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.324 -07 000000585 INF: FPGA: Recv ZSGSRD 29689
17-03-18 07:01:40.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.334 -07 000000585 INF: FPGA: Recv ZSGSRD 29691
17-03-18 07:01:40.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.344 -07 000000585 INF: FPGA: Recv ZSGSRD 29691
17-03-18 07:01:40.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.354 -07 000000585 INF: FPGA: Recv ZSGSRD 29684
17-03-18 07:01:40.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.364 -07 000000585 INF: FPGA: Recv ZSGSRD 29688
17-03-18 07:01:40.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:40.374 -07 000000501 INF: FPGA: Recv ZPIEZORD 25219
17-03-18 07:01:40.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.384 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -9.8 V.
17-03-18 07:01:40.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29686 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29688 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29678 (-130.2 uncal um), Max = 29691 (-130.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:01:40.384 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29686, posNoise = 5, negNoise = 8
17-03-18 07:01:40.384 -07 000000610 INF: Z Motor: After move to -0.131028, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:40.384 -07 000000610 INF: Z Motor: Settle wait time = 1460 ms, measure time = 104 ms (allowed 150 ms), total time = 1564 ms
17-03-18 07:01:40.384 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:40.434 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 07:01:40.434 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:40.434 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.131032513651451. ----------
17-03-18 07:01:40.434 -07 000000610 INF: Cycle	156	Tile	10	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:40.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28447, sync = True, waitForSettling = True)
17-03-18 07:01:40.434 -07 000000610 INF: Z Motor: Moving to -0.130222 mm, started at -0.131033 mm, distance = 0.81 um
17-03-18 07:01:40.434 -07 000000610 INF: FPGA: Xmit ZDACW 28447\n [Z Motor]
17-03-18 07:01:40.434 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 07:01:40.444 -07 000000610 INF: FPGA: 'ZDACW 28447' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:01:40.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:40.444 -07 000000501 INF: FPGA: Recv ZDACR 28447
17-03-18 07:01:40.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:40.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.604 -07 000000585 INF: FPGA: Recv ZSGSRD 29563
17-03-18 07:01:40.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:40.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.614 -07 000000480 INF: FPGA: Recv ZSGSRD 29562
17-03-18 07:01:40.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.624 -07 000000437 INF: FPGA: Recv ZSGSRD 29558
17-03-18 07:01:40.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.634 -07 000000541 INF: FPGA: Recv ZSGSRD 29559
17-03-18 07:01:40.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.644 -07 000000576 INF: FPGA: Recv ZSGSRD 29563
17-03-18 07:01:40.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.654 -07 000000012 INF: FPGA: Recv ZSGSRD 29568
17-03-18 07:01:40.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:40.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.664 -07 000000501 INF: FPGA: Recv ZSGSRD 29555
17-03-18 07:01:40.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.674 -07 000000012 INF: FPGA: Recv ZSGSRD 29562
17-03-18 07:01:40.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.684 -07 000000576 INF: FPGA: Recv ZSGSRD 29559
17-03-18 07:01:40.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:40.694 -07 000000585 INF: FPGA: Recv ZSGSRD 29560
17-03-18 07:01:40.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:40.704 -07 000000437 INF: FPGA: Recv ZPIEZORD 25039
17-03-18 07:01:40.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:40.714 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.9 V.
17-03-18 07:01:40.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29561 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29561 (-129.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29555 (-129.4 uncal um), Max = 29568 (-129.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:01:40.714 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29561, posNoise = 7, negNoise = 6
17-03-18 07:01:40.714 -07 000000610 INF: Z Motor: After move to -0.130222, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:40.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:01:40.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:40.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:40.714 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:40.714 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:40.714 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:40.714 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:40.714 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:40.714 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:40.714 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:40.714 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:40.714 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:01:40.714 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:40.724 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:01:40.724 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:40.724 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:01:40.724 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:40.734 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:01:40.734 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:01:40.734 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:01:40.734 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:01:40.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28623 150\n [Camera]
17-03-18 07:01:40.934 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:41.414 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:41.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:41.414 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:41.414 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:41.414 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) start.
17-03-18 07:01:41.414 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:41.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:41.414 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:41.534 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:41.534 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:01:41.604 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28623 857
17-03-18 07:01:41.714 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.004458,
17-03-18 07:01:41.754 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:41.794 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 07:01:41.794 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 07:01:41.794 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:41.794 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:41.794 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 07:01:41.914 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 07:01:41.914 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 07:01:41.914 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:41.914 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:41.914 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:01:41.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:01:41.924 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-18 07:01:41.984 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:41.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:41.984 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:41.984 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:41.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:41.984 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:41.984 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:41.984 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:01:41.994 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:41.994 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 07:01:42.174 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:01:42.174 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:42.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28623 150' command took 2 ms to send, 1423 ms to get response, and 1434 ms overall
17-03-18 07:01:42.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 07:01:42.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.130229487133731. ------
17-03-18 07:01:42.184 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13656 mm
17-03-18 07:01:42.184 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:42.184 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:01:42.184 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 07:01:42.184 -07 000000012 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 07:01:42.184 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:01:42.184 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29832, sync = True, waitForSettling = False)
17-03-18 07:01:42.184 -07 000000541 INF: Z Motor: Moving to -0.136562 mm, started at -0.130229 mm, distance = -6.33 um
17-03-18 07:01:42.194 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:01:42.194 -07 000000541 INF: FPGA: Xmit ZDACW 29832\n [Z Motor]
17-03-18 07:01:42.194 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 07:01:42.204 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:42.204 -07 000000541 INF: FPGA: 'ZDACW 29832' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 07:01:42.204 -07 000000501 INF: FPGA: Recv YRDPOS 137976
17-03-18 07:01:42.214 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:01:42.214 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 07:01:42.214 -07 000000012 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:42.214 -07 000000012 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:42.214 -07 000000012 INF: Y Motor: Moving 1346 steps-25
17-03-18 07:01:42.224 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:42.224 -07 000000561 INF: FPGA: Recv ZDACR 29832
17-03-18 07:01:42.234 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:42.234 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:01:42.234 -07 000000541 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 07:01:42.354 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 07:01:42.364 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 07:01:42.364 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:42.364 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 07:01:42.364 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 07:01:42.364 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:42.364 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:42.364 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:42.364 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:01:42.374 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 07:01:42.414 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:01:42.414 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 07:01:42.604 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 07:01:42.604 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:01:42.674 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:42.684 -07 000000461 INF: FPGA: Recv YRDPOS 139681
17-03-18 07:01:42.684 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 07:01:42.684 -07 000000012 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:42.684 -07 000000012 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 07:01:42.684 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.842 mm, average velocity = 2.114 mm/sec
17-03-18 07:01:43.634 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:43.634 -07 000000501 INF: FPGA: Recv YRDPOS 139682
17-03-18 07:01:43.644 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:43.644 -07 000000012 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:43.674 -07 000000012 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:43.674 -07 000000012 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:01:43.674 -07 000000012 INF: Y Motor: Moved to 68.2041 after 1488 ms (table move)
17-03-18 07:01:43.674 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136562 mm (DAC = 29832)
17-03-18 07:01:43.674 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:43.684 -07 000000012 INF: FPGA: Recv ZSGSRD 30550
17-03-18 07:01:43.684 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:01:43.684 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:43.684 -07 000000541 INF: FPGA: Recv ZSGSRD 30552
17-03-18 07:01:43.694 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:43.694 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:43.694 -07 000000625 INF: FPGA: Recv ZSGSRD 30543
17-03-18 07:01:43.704 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:43.704 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:43.704 -07 000000461 INF: FPGA: Recv ZSGSRD 30540
17-03-18 07:01:43.714 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:43.714 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:43.714 -07 000000012 INF: FPGA: Recv ZSGSRD 30551
17-03-18 07:01:43.724 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:43.724 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:43.724 -07 000000541 INF: FPGA: Recv ZSGSRD 30550
17-03-18 07:01:43.734 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:43.734 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:43.734 -07 000000474 INF: FPGA: Recv ZSGSRD 30548
17-03-18 07:01:43.744 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:43.744 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:43.744 -07 000000501 INF: FPGA: Recv ZSGSRD 30546
17-03-18 07:01:43.754 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:43.754 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:43.754 -07 000000012 INF: FPGA: Recv ZSGSRD 30545
17-03-18 07:01:43.764 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:43.764 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:43.764 -07 000000585 INF: FPGA: Recv ZSGSRD 30545
17-03-18 07:01:43.774 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:43.774 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:43.774 -07 000000474 INF: FPGA: Recv ZPIEZORD 26314
17-03-18 07:01:43.784 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:43.784 -07 000000576 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.552 V. Piezo Error = -9.3 V.
17-03-18 07:01:43.784 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30547 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30547 (-135.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30540 (-135.7 uncal um), Max = 30552 (-135.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:01:43.784 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30547, posNoise = 5, negNoise = 7
17-03-18 07:01:43.784 -07 000000576 INF: Z Motor: After move to -0.136562, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:43.784 -07 000000576 INF: Z Motor: Settle wait time = 1490 ms, measure time = 103 ms (allowed 150 ms), total time = 1593 ms
17-03-18 07:01:43.784 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:43.834 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1647 ms
17-03-18 07:01:43.834 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:43.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:43.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:43.834 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:43.834 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:43.834 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:01:43.834 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:43.834 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 07:01:43.834 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:01:43.844 -07 000000625 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:01:43.844 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:01:43.854 -07 000000625 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 07:01:43.854 -07 000000625 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 07:01:43.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:01:43.894 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:01:44.194 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:01:44.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:01:44.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:01:44.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-18 07:01:44.234 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:01:44.234 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 07:01:44.234 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 07:01:44.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 07:01:44.324 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:44.324 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:01:44.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 07:01:44.334 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:01:44.334 -07 000000576 INF: Autofocus start
17-03-18 07:01:44.334 -07 000000576 INF: MeasureProfile start
17-03-18 07:01:44.334 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:01:44.344 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:01:44.344 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:01:44.354 -07 000000576 INF: MeasureProfile done
17-03-18 07:01:44.354 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-18 07:01:44.354 -07 000000576 INF: Autofocus finished
17-03-18 07:01:44.544 -07 000000625 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:01:44.544 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:01:44.544 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.136563760305507. ----------
17-03-18 07:01:44.544 -07 000000610 INF: Cycle	156	Tile	11	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:44.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28356, sync = True, waitForSettling = True)
17-03-18 07:01:44.554 -07 000000610 INF: Z Motor: Moving to -0.129805 mm, started at -0.136564 mm, distance = 6.76 um
17-03-18 07:01:44.554 -07 000000610 INF: FPGA: Xmit ZDACW 28356\n [Z Motor]
17-03-18 07:01:44.554 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:01:44.564 -07 000000610 INF: FPGA: 'ZDACW 28356' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:01:44.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:44.564 -07 000000012 INF: FPGA: Recv ZDACR 28356
17-03-18 07:01:44.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:44.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:44.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:44.724 -07 000000437 INF: FPGA: Recv ZSGSRD 29497
17-03-18 07:01:44.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:44.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:44.734 -07 000000541 INF: FPGA: Recv ZSGSRD 29495
17-03-18 07:01:44.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:44.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:44.744 -07 000000585 INF: FPGA: Recv ZSGSRD 29492
17-03-18 07:01:44.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:44.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:44.754 -07 000000625 INF: FPGA: Recv ZSGSRD 29494
17-03-18 07:01:44.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:44.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:44.764 -07 000000437 INF: FPGA: Recv ZSGSRD 29492
17-03-18 07:01:44.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:44.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:44.774 -07 000000461 INF: FPGA: Recv ZSGSRD 29499
17-03-18 07:01:44.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:44.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:44.784 -07 000000474 INF: FPGA: Recv ZSGSRD 29500
17-03-18 07:01:44.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:44.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:44.794 -07 000000501 INF: FPGA: Recv ZSGSRD 29496
17-03-18 07:01:44.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:44.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:44.804 -07 000000561 INF: FPGA: Recv ZSGSRD 29497
17-03-18 07:01:44.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:44.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:44.814 -07 000000012 INF: FPGA: Recv ZSGSRD 29492
17-03-18 07:01:44.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:44.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:44.824 -07 000000474 INF: FPGA: Recv ZPIEZORD 24947
17-03-18 07:01:44.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:44.834 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -10.0 V.
17-03-18 07:01:44.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29495 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29496 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29492 (-129.0 uncal um), Max = 29500 (-129.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 07:01:44.834 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29495, posNoise = 5, negNoise = 3
17-03-18 07:01:44.834 -07 000000610 INF: Z Motor: After move to -0.129805, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:44.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 07:01:44.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:44.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:44.834 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:44.834 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:44.834 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:44.834 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:44.834 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:44.834 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:44.834 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-18 07:01:44.834 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:44.834 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-18 07:01:44.834 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:44.844 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 07:01:44.844 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:44.844 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:01:44.844 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:44.854 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 07:01:44.854 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:01:44.854 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 07:01:44.854 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:01:44.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28533 150\n [Camera]
17-03-18 07:01:45.054 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:45.524 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:45.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:45.524 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:45.524 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:45.524 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 07:01:45.524 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:45.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:45.534 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:45.534 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:45.534 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) start.
17-03-18 07:01:45.714 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28533 857
17-03-18 07:01:45.864 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:45.904 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 07:01:45.904 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 07:01:45.904 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:45.904 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:01:45.904 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 07:01:45.904 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:45.904 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:45.914 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:45.914 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:01:45.914 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 07:01:46.094 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:46.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:46.094 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:46.094 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:46.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:46.094 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:46.094 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 07:01:46.094 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:46.104 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:46.104 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 07:01:46.284 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-18 07:01:46.284 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:46.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28533 150' command took 2 ms to send, 1427 ms to get response, and 1433 ms overall
17-03-18 07:01:46.284 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.130341
17-03-18 07:01:46.294 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13034 mm
17-03-18 07:01:46.294 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:46.294 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 07:01:46.294 -07 000000512 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 07:01:46.294 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 28473, sync = True, waitForSettling = False)
17-03-18 07:01:46.294 -07 000000474 INF: Z Motor: Moving to -0.130341 mm, started at -0.129805 mm, distance = -0.54 um
17-03-18 07:01:46.294 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:46.294 -07 000000480 INF: FPGA: Recv YRDPOS 139682
17-03-18 07:01:46.304 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:01:46.304 -07 000000512 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:46.304 -07 000000512 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:46.304 -07 000000512 INF: Y Motor: Moving 1342 steps-18
17-03-18 07:01:46.304 -07 000000474 INF: FPGA: Xmit ZDACW 28473\n [Z Motor]
17-03-18 07:01:46.304 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 07:01:46.314 -07 000000474 INF: FPGA: 'ZDACW 28473' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 07:01:46.314 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:46.314 -07 000000461 INF: FPGA: Recv ZDACR 28473
17-03-18 07:01:46.324 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:46.324 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:46.324 -07 000000474 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 07:01:46.494 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 07:01:46.494 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 07:01:46.494 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:46.494 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 07:01:46.494 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 07:01:46.494 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:46.494 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:46.494 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:46.494 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 07:01:46.504 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 07:01:46.694 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 07:01:46.694 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:01:46.764 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:46.764 -07 000000480 INF: FPGA: Recv YRDPOS 141365
17-03-18 07:01:46.774 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 07:01:46.774 -07 000000512 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:46.774 -07 000000512 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 07:01:46.774 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-18 07:01:46.914 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:01:46.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:01:47.074 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.020806,
17-03-18 07:01:47.724 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:47.724 -07 000000606 INF: FPGA: Recv YRDPOS 141365
17-03-18 07:01:47.734 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:47.734 -07 000000512 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:47.764 -07 000000512 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:47.764 -07 000000512 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:01:47.764 -07 000000512 INF: Y Motor: Moved to 69.0259 after 1471 ms (table move)
17-03-18 07:01:47.764 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130341 mm (DAC = 28473)
17-03-18 07:01:47.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:47.774 -07 000000480 INF: FPGA: Recv ZSGSRD 29578
17-03-18 07:01:47.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 07:01:47.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:47.774 -07 000000437 INF: FPGA: Recv ZSGSRD 29578
17-03-18 07:01:47.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:01:47.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:47.784 -07 000000512 INF: FPGA: Recv ZSGSRD 29577
17-03-18 07:01:47.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:47.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:47.794 -07 000000501 INF: FPGA: Recv ZSGSRD 29568
17-03-18 07:01:47.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:47.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:47.804 -07 000000012 INF: FPGA: Recv ZSGSRD 29585
17-03-18 07:01:47.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:47.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:47.814 -07 000000480 INF: FPGA: Recv ZSGSRD 29583
17-03-18 07:01:47.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:47.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:47.824 -07 000000585 INF: FPGA: Recv ZSGSRD 29585
17-03-18 07:01:47.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:47.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:47.834 -07 000000480 INF: FPGA: Recv ZSGSRD 29580
17-03-18 07:01:47.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:47.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:47.844 -07 000000585 INF: FPGA: Recv ZSGSRD 29571
17-03-18 07:01:47.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:47.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:47.854 -07 000000576 INF: FPGA: Recv ZSGSRD 29582
17-03-18 07:01:47.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:47.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:47.864 -07 000000585 INF: FPGA: Recv ZPIEZORD 25078
17-03-18 07:01:47.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:47.874 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.345 V. Piezo Error = -9.9 V.
17-03-18 07:01:47.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29579 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29579 (-129.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29568 (-129.5 uncal um), Max = 29585 (-129.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 07:01:47.874 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29579, posNoise = 6, negNoise = 11
17-03-18 07:01:47.874 -07 000000610 INF: Z Motor: After move to -0.130341, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:47.874 -07 000000610 INF: Z Motor: Settle wait time = 1474 ms, measure time = 103 ms (allowed 150 ms), total time = 1577 ms
17-03-18 07:01:47.874 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:47.924 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 07:01:47.924 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:47.924 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.130345122952282. ----------
17-03-18 07:01:47.924 -07 000000610 INF: Cycle	156	Tile	12	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:47.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28296, sync = True, waitForSettling = True)
17-03-18 07:01:47.924 -07 000000610 INF: Z Motor: Moving to -0.129531 mm, started at -0.130345 mm, distance = 0.81 um
17-03-18 07:01:47.924 -07 000000610 INF: FPGA: Xmit ZDACW 28296\n [Z Motor]
17-03-18 07:01:47.924 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 07:01:47.934 -07 000000610 INF: FPGA: 'ZDACW 28296' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:01:47.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:47.934 -07 000000606 INF: FPGA: Recv ZDACR 28296
17-03-18 07:01:47.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:47.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:48.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:48.094 -07 000000012 INF: FPGA: Recv ZSGSRD 29444
17-03-18 07:01:48.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:48.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:48.104 -07 000000576 INF: FPGA: Recv ZSGSRD 29449
17-03-18 07:01:48.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:48.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:48.114 -07 000000606 INF: FPGA: Recv ZSGSRD 29454
17-03-18 07:01:48.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:48.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:48.124 -07 000000576 INF: FPGA: Recv ZSGSRD 29454
17-03-18 07:01:48.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:48.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:48.134 -07 000000012 INF: FPGA: Recv ZSGSRD 29459
17-03-18 07:01:48.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:48.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:48.144 -07 000000576 INF: FPGA: Recv ZSGSRD 29452
17-03-18 07:01:48.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:48.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:48.154 -07 000000012 INF: FPGA: Recv ZSGSRD 29455
17-03-18 07:01:48.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:48.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:48.164 -07 000000437 INF: FPGA: Recv ZSGSRD 29449
17-03-18 07:01:48.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:48.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:48.174 -07 000000606 INF: FPGA: Recv ZSGSRD 29452
17-03-18 07:01:48.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:48.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:48.184 -07 000000437 INF: FPGA: Recv ZSGSRD 29449
17-03-18 07:01:48.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:48.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:48.194 -07 000000606 INF: FPGA: Recv ZPIEZORD 24932
17-03-18 07:01:48.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:48.204 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -9.9 V.
17-03-18 07:01:48.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29452 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29452 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29444 (-128.7 uncal um), Max = 29459 (-128.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:01:48.204 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29452, posNoise = 7, negNoise = 8
17-03-18 07:01:48.204 -07 000000610 INF: Z Motor: After move to -0.129531, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:48.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:01:48.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:48.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:48.204 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:48.204 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:48.204 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:48.204 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:48.204 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:48.204 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:48.204 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:48.204 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:48.204 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:01:48.204 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:48.214 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:01:48.214 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:48.214 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:01:48.214 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:48.224 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:01:48.224 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:01:48.224 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:01:48.224 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:01:48.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28473 150\n [Camera]
17-03-18 07:01:48.424 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:48.904 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:48.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:48.904 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:48.904 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:48.904 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 07:01:48.904 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:48.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:48.904 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:48.904 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:48.904 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:01:49.094 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28473 857
17-03-18 07:01:49.244 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:49.284 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 07:01:49.284 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 07:01:49.284 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:49.284 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 07:01:49.284 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 07:01:49.284 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:49.284 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:01:49.284 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:01:49.284 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:01:49.294 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:01:49.474 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:49.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:49.474 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:49.604 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:49.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:49.604 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:49.614 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:49.614 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:01:49.614 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:49.614 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 07:01:49.664 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-18 07:01:49.664 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:49.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28473 150' command took 2 ms to send, 1425 ms to get response, and 1436 ms overall
17-03-18 07:01:49.664 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130003
17-03-18 07:01:49.664 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13000 mm
17-03-18 07:01:49.664 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:49.674 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 07:01:49.674 -07 000000480 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 07:01:49.674 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:49.674 -07 000000585 INF: Z Motor: Entering MoveAbsStepped (DAC = 28399, sync = True, waitForSettling = False)
17-03-18 07:01:49.674 -07 000000585 INF: Z Motor: Moving to -0.130002 mm, started at -0.129529 mm, distance = -0.47 um
17-03-18 07:01:49.674 -07 000000437 INF: FPGA: Recv YRDPOS 141365
17-03-18 07:01:49.684 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:49.684 -07 000000480 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:49.684 -07 000000480 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:49.684 -07 000000480 INF: Y Motor: Moving 1355 steps-34
17-03-18 07:01:49.684 -07 000000585 INF: FPGA: Xmit ZDACW 28399\n [Z Motor]
17-03-18 07:01:49.684 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 07:01:49.694 -07 000000585 INF: FPGA: 'ZDACW 28399' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:01:49.694 -07 000000585 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:49.694 -07 000000437 INF: FPGA: Recv ZDACR 28399
17-03-18 07:01:49.704 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:49.704 -07 000000585 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:49.704 -07 000000585 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 07:01:50.004 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 07:01:50.004 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 07:01:50.004 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:50.004 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 07:01:50.004 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 07:01:50.004 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:50.014 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:50.014 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-18 07:01:50.014 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:50.014 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 07:01:50.074 -07 000000585 INF: FPGA: Recv YMVTILE
17-03-18 07:01:50.074 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:01:50.134 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:50.134 -07 000000501 INF: FPGA: Recv YRDPOS 143078
17-03-18 07:01:50.144 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:50.144 -07 000000480 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:50.144 -07 000000480 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 07:01:50.144 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-18 07:01:51.094 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:51.094 -07 000000606 INF: FPGA: Recv YRDPOS 143078
17-03-18 07:01:51.104 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.104 -07 000000480 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:51.134 -07 000000480 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:51.134 -07 000000480 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:01:51.134 -07 000000480 INF: Y Motor: Moved to 69.8623 after 1463 ms (table move)
17-03-18 07:01:51.134 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130002 mm (DAC = 28399)
17-03-18 07:01:51.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.134 -07 000000576 INF: FPGA: Recv ZSGSRD 29526
17-03-18 07:01:51.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:01:51.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.144 -07 000000606 INF: FPGA: Recv ZSGSRD 29521
17-03-18 07:01:51.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.154 -07 000000576 INF: FPGA: Recv ZSGSRD 29528
17-03-18 07:01:51.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:51.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.164 -07 000000012 INF: FPGA: Recv ZSGSRD 29525
17-03-18 07:01:51.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.174 -07 000000576 INF: FPGA: Recv ZSGSRD 29511
17-03-18 07:01:51.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.184 -07 000000501 INF: FPGA: Recv ZSGSRD 29514
17-03-18 07:01:51.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.194 -07 000000606 INF: FPGA: Recv ZSGSRD 29529
17-03-18 07:01:51.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.204 -07 000000576 INF: FPGA: Recv ZSGSRD 29530
17-03-18 07:01:51.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.214 -07 000000576 INF: FPGA: Recv ZSGSRD 29525
17-03-18 07:01:51.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.224 -07 000000012 INF: FPGA: Recv ZSGSRD 29528
17-03-18 07:01:51.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:51.234 -07 000000501 INF: FPGA: Recv ZPIEZORD 25047
17-03-18 07:01:51.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.244 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -9.8 V.
17-03-18 07:01:51.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29524 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29526 (-129.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29511 (-129.1 uncal um), Max = 29530 (-129.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-18 07:01:51.244 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29524, posNoise = 6, negNoise = 13
17-03-18 07:01:51.244 -07 000000610 INF: Z Motor: After move to -0.130002, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:51.244 -07 000000610 INF: Z Motor: Settle wait time = 1465 ms, measure time = 105 ms (allowed 150 ms), total time = 1570 ms
17-03-18 07:01:51.244 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:51.294 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 07:01:51.294 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:51.294 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.129991791284486. ----------
17-03-18 07:01:51.294 -07 000000610 INF: Cycle	156	Tile	13	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:51.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28222, sync = True, waitForSettling = True)
17-03-18 07:01:51.294 -07 000000610 INF: Z Motor: Moving to -0.129192 mm, started at -0.129992 mm, distance = 0.80 um
17-03-18 07:01:51.294 -07 000000610 INF: FPGA: Xmit ZDACW 28222\n [Z Motor]
17-03-18 07:01:51.294 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 07:01:51.304 -07 000000610 INF: FPGA: 'ZDACW 28222' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:01:51.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:51.304 -07 000000012 INF: FPGA: Recv ZDACR 28222
17-03-18 07:01:51.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:51.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.464 -07 000000585 INF: FPGA: Recv ZSGSRD 29403
17-03-18 07:01:51.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:51.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.474 -07 000000512 INF: FPGA: Recv ZSGSRD 29403
17-03-18 07:01:51.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.484 -07 000000474 INF: FPGA: Recv ZSGSRD 29397
17-03-18 07:01:51.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.494 -07 000000585 INF: FPGA: Recv ZSGSRD 29396
17-03-18 07:01:51.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.504 -07 000000480 INF: FPGA: Recv ZSGSRD 29399
17-03-18 07:01:51.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.514 -07 000000480 INF: FPGA: Recv ZSGSRD 29401
17-03-18 07:01:51.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.524 -07 000000576 INF: FPGA: Recv ZSGSRD 29398
17-03-18 07:01:51.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.534 -07 000000474 INF: FPGA: Recv ZSGSRD 29403
17-03-18 07:01:51.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.544 -07 000000480 INF: FPGA: Recv ZSGSRD 29399
17-03-18 07:01:51.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:51.554 -07 000000576 INF: FPGA: Recv ZSGSRD 29397
17-03-18 07:01:51.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:51.564 -07 000000012 INF: FPGA: Recv ZPIEZORD 24853
17-03-18 07:01:51.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:51.574 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.306 V. Piezo Error = -10.0 V.
17-03-18 07:01:51.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29400 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29399 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29396 (-128.4 uncal um), Max = 29403 (-128.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:01:51.574 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29400, posNoise = 3, negNoise = 4
17-03-18 07:01:51.574 -07 000000610 INF: Z Motor: After move to -0.129192, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:51.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:01:51.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:51.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:51.574 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:51.574 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:51.574 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:51.574 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:51.574 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:51.574 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:51.574 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:51.574 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:51.574 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:01:51.574 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:51.584 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 07:01:51.584 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:51.584 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:01:51.584 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:51.594 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:01:51.594 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:01:51.594 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:01:51.594 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:01:51.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28399 150\n [Camera]
17-03-18 07:01:51.804 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:51.914 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:01:51.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:01:52.274 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 667
17-03-18 07:01:52.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 667
17-03-18 07:01:52.274 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:52.274 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:52.274 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 07:01:52.274 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 667
17-03-18 07:01:52.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 667
17-03-18 07:01:52.284 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:52.284 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:52.284 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:01:52.434 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.019446,
17-03-18 07:01:52.464 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28399 860
17-03-18 07:01:52.614 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:52.654 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 07:01:52.654 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 07:01:52.654 -07 000000585 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:52.664 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:52.664 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 07:01:52.664 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:01:52.664 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:52.664 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:52.664 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 07:01:52.664 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:01:52.844 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:52.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:52.844 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:52.844 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:52.844 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) start.
17-03-18 07:01:52.844 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:52.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:52.844 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:52.964 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:52.964 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:01:53.034 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:01:53.034 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:53.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28399 150' command took 2 ms to send, 1425 ms to get response, and 1433 ms overall
17-03-18 07:01:53.034 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.129627
17-03-18 07:01:53.034 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.12963 mm
17-03-18 07:01:53.034 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:53.034 -07 000000585 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 07:01:53.034 -07 000000585 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 07:01:53.034 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:53.044 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 28317, sync = True, waitForSettling = False)
17-03-18 07:01:53.044 -07 000000501 INF: Z Motor: Moving to -0.129627 mm, started at -0.129195 mm, distance = -0.43 um
17-03-18 07:01:53.044 -07 000000474 INF: FPGA: Recv YRDPOS 143078
17-03-18 07:01:53.054 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:53.054 -07 000000585 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:53.054 -07 000000585 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:53.054 -07 000000585 INF: Y Motor: Moving 1344 steps-21
17-03-18 07:01:53.064 -07 000000501 INF: FPGA: Xmit ZDACW 28317\n [Z Motor]
17-03-18 07:01:53.064 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 07:01:53.074 -07 000000585 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:53.074 -07 000000501 INF: FPGA: 'ZDACW 28317' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:01:53.094 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:53.094 -07 000000437 INF: FPGA: Recv ZDACR 28317
17-03-18 07:01:53.104 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:01:53.104 -07 000000501 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-18 07:01:53.224 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:01:53.224 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 07:01:53.224 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:53.224 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:53.224 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:01:53.344 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 07:01:53.344 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 07:01:53.344 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:53.344 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:53.354 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-18 07:01:53.444 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 07:01:53.454 -07 000000585 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-18 07:01:53.504 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:53.504 -07 000000474 INF: FPGA: Recv YRDPOS 144768
17-03-18 07:01:53.514 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:01:53.514 -07 000000585 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:53.514 -07 000000585 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 07:01:53.514 -07 000000585 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.106 mm/sec
17-03-18 07:01:54.464 -07 000000585 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:54.464 -07 000000512 INF: FPGA: Recv YRDPOS 144768
17-03-18 07:01:54.474 -07 000000585 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.474 -07 000000585 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:54.504 -07 000000585 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:54.504 -07 000000585 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:01:54.504 -07 000000585 INF: Y Motor: Moved to 70.6875 after 1463 ms (table move)
17-03-18 07:01:54.504 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129627 mm (DAC = 28317)
17-03-18 07:01:54.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.504 -07 000000474 INF: FPGA: Recv ZSGSRD 29468
17-03-18 07:01:54.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:01:54.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.514 -07 000000606 INF: FPGA: Recv ZSGSRD 29461
17-03-18 07:01:54.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.524 -07 000000512 INF: FPGA: Recv ZSGSRD 29465
17-03-18 07:01:54.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.534 -07 000000512 INF: FPGA: Recv ZSGSRD 29463
17-03-18 07:01:54.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.544 -07 000000437 INF: FPGA: Recv ZSGSRD 29468
17-03-18 07:01:54.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.554 -07 000000480 INF: FPGA: Recv ZSGSRD 29472
17-03-18 07:01:54.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.564 -07 000000012 INF: FPGA: Recv ZSGSRD 29465
17-03-18 07:01:54.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.574 -07 000000576 INF: FPGA: Recv ZSGSRD 29466
17-03-18 07:01:54.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.584 -07 000000437 INF: FPGA: Recv ZSGSRD 29463
17-03-18 07:01:54.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.594 -07 000000576 INF: FPGA: Recv ZSGSRD 29462
17-03-18 07:01:54.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:54.604 -07 000000012 INF: FPGA: Recv ZPIEZORD 25000
17-03-18 07:01:54.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.614 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -9.8 V.
17-03-18 07:01:54.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29465 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29465 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29461 (-128.8 uncal um), Max = 29472 (-128.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:01:54.614 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29465, posNoise = 7, negNoise = 4
17-03-18 07:01:54.614 -07 000000610 INF: Z Motor: After move to -0.129627, error = 0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:54.614 -07 000000610 INF: Z Motor: Settle wait time = 1465 ms, measure time = 105 ms (allowed 150 ms), total time = 1570 ms
17-03-18 07:01:54.614 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:54.664 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 07:01:54.664 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:54.664 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.129612762768122. ----------
17-03-18 07:01:54.664 -07 000000610 INF: Cycle	156	Tile	14	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:54.664 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28140, sync = True, waitForSettling = True)
17-03-18 07:01:54.664 -07 000000610 INF: Z Motor: Moving to -0.128817 mm, started at -0.129613 mm, distance = 0.80 um
17-03-18 07:01:54.664 -07 000000610 INF: FPGA: Xmit ZDACW 28140\n [Z Motor]
17-03-18 07:01:54.664 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 07:01:54.674 -07 000000610 INF: FPGA: 'ZDACW 28140' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:01:54.674 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:54.674 -07 000000585 INF: FPGA: Recv ZDACR 28140
17-03-18 07:01:54.684 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.684 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:54.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.834 -07 000000437 INF: FPGA: Recv ZSGSRD 29340
17-03-18 07:01:54.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:54.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.844 -07 000000585 INF: FPGA: Recv ZSGSRD 29348
17-03-18 07:01:54.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.854 -07 000000437 INF: FPGA: Recv ZSGSRD 29338
17-03-18 07:01:54.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.864 -07 000000474 INF: FPGA: Recv ZSGSRD 29345
17-03-18 07:01:54.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.874 -07 000000512 INF: FPGA: Recv ZSGSRD 29339
17-03-18 07:01:54.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.884 -07 000000585 INF: FPGA: Recv ZSGSRD 29342
17-03-18 07:01:54.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.894 -07 000000512 INF: FPGA: Recv ZSGSRD 29344
17-03-18 07:01:54.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.904 -07 000000437 INF: FPGA: Recv ZSGSRD 29339
17-03-18 07:01:54.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.914 -07 000000480 INF: FPGA: Recv ZSGSRD 29343
17-03-18 07:01:54.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:54.924 -07 000000437 INF: FPGA: Recv ZSGSRD 29342
17-03-18 07:01:54.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:54.934 -07 000000585 INF: FPGA: Recv ZPIEZORD 24806
17-03-18 07:01:54.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:54.944 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.9 V.
17-03-18 07:01:54.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29342 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29342 (-128.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29338 (-128.0 uncal um), Max = 29348 (-128.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:01:54.944 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29342, posNoise = 6, negNoise = 4
17-03-18 07:01:54.944 -07 000000610 INF: Z Motor: After move to -0.128817, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:54.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 07:01:54.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:54.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:54.944 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:54.944 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:54.944 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:54.944 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:54.944 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:54.944 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:54.944 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:54.944 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:54.944 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:01:54.944 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:54.954 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 07:01:54.954 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:54.954 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:01:54.954 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:54.964 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:01:54.964 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:01:54.964 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:01:54.964 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:01:54.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28317 150\n [Camera]
17-03-18 07:01:55.164 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:55.644 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:55.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:55.644 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:55.644 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:55.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:55.644 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:55.644 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:55.644 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:01:55.654 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:55.654 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 07:01:55.834 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28317 857
17-03-18 07:01:55.984 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:01:56.024 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 07:01:56.024 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 07:01:56.024 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:56.034 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 07:01:56.034 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 07:01:56.034 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:56.034 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:56.044 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:01:56.044 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 07:01:56.044 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 07:01:56.214 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:01:56.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:01:56.214 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:56.214 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:56.214 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 07:01:56.214 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:01:56.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:01:56.214 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:56.214 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:56.214 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) start.
17-03-18 07:01:56.404 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-18 07:01:56.404 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:01:56.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28317 150' command took 2 ms to send, 1423 ms to get response, and 1434 ms overall
17-03-18 07:01:56.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 07:01:56.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.128822584674685. ------
17-03-18 07:01:56.414 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13546 mm
17-03-18 07:01:56.414 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:01:56.414 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:01:56.414 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 07:01:56.414 -07 000000012 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 07:01:56.414 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29591, sync = True, waitForSettling = False)
17-03-18 07:01:56.414 -07 000000437 INF: Z Motor: Moving to -0.135459 mm, started at -0.128823 mm, distance = -6.64 um
17-03-18 07:01:56.414 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:01:56.424 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:01:56.424 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:56.424 -07 000000474 INF: FPGA: Recv YRDPOS 144768
17-03-18 07:01:56.434 -07 000000437 INF: FPGA: Xmit ZDACW 29591\n [Z Motor]
17-03-18 07:01:56.434 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 07:01:56.434 -07 000000012 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:56.434 -07 000000012 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:01:56.434 -07 000000012 INF: Y Motor: Moving 1352 steps-31
17-03-18 07:01:56.434 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:01:56.444 -07 000000437 INF: FPGA: 'ZDACW 29591' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 07:01:56.444 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:01:56.454 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:01:56.464 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:56.464 -07 000000474 INF: FPGA: Recv ZDACR 29591
17-03-18 07:01:56.474 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:01:56.474 -07 000000437 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 07:01:56.594 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 07:01:56.594 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:01:56.594 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:56.594 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 07:01:56.594 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 07:01:56.594 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:56.594 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:56.594 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:01:56.594 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:01:56.604 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 07:01:56.644 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:01:56.644 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-18 07:01:56.824 -07 000000625 INF: FPGA: Recv YMVTILE
17-03-18 07:01:56.824 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:01:56.884 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:56.884 -07 000000585 INF: FPGA: Recv YRDPOS 146468
17-03-18 07:01:56.894 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:01:56.894 -07 000000012 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:56.894 -07 000000012 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 07:01:56.894 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-18 07:01:56.914 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:01:56.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:01:57.794 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.011254,
17-03-18 07:01:57.844 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:01:57.844 -07 000000501 INF: FPGA: Recv YRDPOS 146468
17-03-18 07:01:57.854 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:57.854 -07 000000012 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:01:57.884 -07 000000012 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:01:57.884 -07 000000012 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:01:57.884 -07 000000012 INF: Y Motor: Moved to 71.5176 after 1468 ms (table move)
17-03-18 07:01:57.884 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135459 mm (DAC = 29591)
17-03-18 07:01:57.884 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:57.884 -07 000000480 INF: FPGA: Recv ZSGSRD 30370
17-03-18 07:01:57.894 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:01:57.894 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:57.894 -07 000000576 INF: FPGA: Recv ZSGSRD 30377
17-03-18 07:01:57.904 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:57.904 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:57.904 -07 000000480 INF: FPGA: Recv ZSGSRD 30378
17-03-18 07:01:57.914 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:57.914 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:57.914 -07 000000501 INF: FPGA: Recv ZSGSRD 30378
17-03-18 07:01:57.924 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:57.924 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:57.924 -07 000000576 INF: FPGA: Recv ZSGSRD 30373
17-03-18 07:01:57.934 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:57.934 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:57.934 -07 000000501 INF: FPGA: Recv ZSGSRD 30374
17-03-18 07:01:57.944 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:57.944 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:57.944 -07 000000561 INF: FPGA: Recv ZSGSRD 30374
17-03-18 07:01:57.954 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:57.954 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:57.954 -07 000000576 INF: FPGA: Recv ZSGSRD 30378
17-03-18 07:01:57.964 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:57.964 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:57.964 -07 000000480 INF: FPGA: Recv ZSGSRD 30375
17-03-18 07:01:57.974 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:57.974 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:57.974 -07 000000461 INF: FPGA: Recv ZSGSRD 30372
17-03-18 07:01:57.984 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:57.984 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:57.984 -07 000000576 INF: FPGA: Recv ZPIEZORD 26195
17-03-18 07:01:57.994 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:57.994 -07 000000606 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.515 V. Piezo Error = -9.2 V.
17-03-18 07:01:57.994 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30375 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30374 (-134.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30370 (-134.6 uncal um), Max = 30378 (-134.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:01:57.994 -07 000000606 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30375, posNoise = 3, negNoise = 5
17-03-18 07:01:57.994 -07 000000606 INF: Z Motor: After move to -0.135459, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:57.994 -07 000000606 INF: Z Motor: Settle wait time = 1471 ms, measure time = 103 ms (allowed 150 ms), total time = 1574 ms
17-03-18 07:01:57.994 -07 000000606 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 07:01:58.044 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 07:01:58.044 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:01:58.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:58.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:58.044 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:58.044 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:58.044 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:01:58.044 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:58.054 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:58.054 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:01:58.054 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 07:01:58.054 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:01:58.064 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 07:01:58.064 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 07:01:58.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:01:58.114 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:01:58.414 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:01:58.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:01:58.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:01:58.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-18 07:01:58.454 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:01:58.454 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 07:01:58.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 07:01:58.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 07:01:58.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:01:58.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:01:58.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 07:01:58.554 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:01:58.554 -07 000000576 INF: Autofocus start
17-03-18 07:01:58.554 -07 000000576 INF: MeasureProfile start
17-03-18 07:01:58.554 -07 000000625 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:01:58.564 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:01:58.564 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:01:58.564 -07 000000576 INF: MeasureProfile done
17-03-18 07:01:58.564 -07 000000576 INF: X=48  Z correction [um]=0.2069503
17-03-18 07:01:58.564 -07 000000576 INF: Autofocus finished
17-03-18 07:01:58.764 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:01:58.764 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:01:58.764 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.135458795817124. ----------
17-03-18 07:01:58.774 -07 000000610 INF: Cycle	156	Tile	15	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:01:58.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28148, sync = True, waitForSettling = True)
17-03-18 07:01:58.774 -07 000000610 INF: Z Motor: Moving to -0.128853 mm, started at -0.135459 mm, distance = 6.61 um
17-03-18 07:01:58.774 -07 000000610 INF: FPGA: Xmit ZDACW 28148\n [Z Motor]
17-03-18 07:01:58.774 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:01:58.784 -07 000000610 INF: FPGA: 'ZDACW 28148' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:01:58.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:01:58.784 -07 000000576 INF: FPGA: Recv ZDACR 28148
17-03-18 07:01:58.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:58.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:01:58.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:58.944 -07 000000474 INF: FPGA: Recv ZSGSRD 29345
17-03-18 07:01:58.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:01:58.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:58.954 -07 000000480 INF: FPGA: Recv ZSGSRD 29349
17-03-18 07:01:58.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:58.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:58.964 -07 000000625 INF: FPGA: Recv ZSGSRD 29347
17-03-18 07:01:58.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:58.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:58.974 -07 000000480 INF: FPGA: Recv ZSGSRD 29347
17-03-18 07:01:58.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:58.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:58.984 -07 000000625 INF: FPGA: Recv ZSGSRD 29348
17-03-18 07:01:58.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:58.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:58.994 -07 000000585 INF: FPGA: Recv ZSGSRD 29353
17-03-18 07:01:59.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:59.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:59.004 -07 000000625 INF: FPGA: Recv ZSGSRD 29349
17-03-18 07:01:59.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:59.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:59.014 -07 000000512 INF: FPGA: Recv ZSGSRD 29351
17-03-18 07:01:59.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:59.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:59.024 -07 000000585 INF: FPGA: Recv ZSGSRD 29348
17-03-18 07:01:59.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:59.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:01:59.034 -07 000000625 INF: FPGA: Recv ZSGSRD 29349
17-03-18 07:01:59.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:59.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:01:59.044 -07 000000585 INF: FPGA: Recv ZPIEZORD 24850
17-03-18 07:01:59.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:01:59.054 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.295 V. Piezo Error = -9.9 V.
17-03-18 07:01:59.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29349 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29348 (-128.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29345 (-128.1 uncal um), Max = 29353 (-128.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:01:59.054 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29349, posNoise = 4, negNoise = 4
17-03-18 07:01:59.054 -07 000000610 INF: Z Motor: After move to -0.128853, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:01:59.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 07:01:59.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:01:59.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:01:59.054 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:01:59.054 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:01:59.054 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:01:59.054 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:01:59.054 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:01:59.054 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:01:59.054 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:01:59.054 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:01:59.054 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:01:59.054 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:01:59.064 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:01:59.064 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:01:59.064 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:01:59.064 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:01:59.074 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 07:01:59.074 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:01:59.074 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:01:59.074 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:01:59.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28325 150\n [Camera]
17-03-18 07:01:59.274 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:01:59.744 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:01:59.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:01:59.744 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:01:59.744 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:01:59.744 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 07:01:59.744 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:01:59.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:01:59.744 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:01:59.744 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:01:59.744 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 07:01:59.934 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28325 857
17-03-18 07:02:00.084 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:02:00.134 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 07:02:00.134 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:02:00.134 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:00.134 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 07:02:00.134 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 07:02:00.134 -07 000000625 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:00.134 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:02:00.134 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 07:02:00.134 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 07:02:00.144 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 07:02:00.314 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:02:00.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:02:00.314 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:02:00.314 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:02:00.314 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 07:02:00.314 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:02:00.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:02:00.314 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:02:00.314 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:02:00.314 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:02:00.504 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:02:00.514 -07 000000585 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:02:00.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28325 150' command took 2 ms to send, 1432 ms to get response, and 1439 ms overall
17-03-18 07:02:00.514 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129206
17-03-18 07:02:00.514 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12921 mm
17-03-18 07:02:00.514 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:02:00.514 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 07:02:00.514 -07 000000480 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 07:02:00.514 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 28225, sync = True, waitForSettling = False)
17-03-18 07:02:00.514 -07 000000625 INF: Z Motor: Moving to -0.129206 mm, started at -0.128868 mm, distance = -0.34 um
17-03-18 07:02:00.514 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:02:00.524 -07 000000625 INF: FPGA: Xmit ZDACW 28225\n [Z Motor]
17-03-18 07:02:00.524 -07 000000461 INF: FPGA: Recv YRDPOS 146469
17-03-18 07:02:00.524 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:02:00.524 -07 000000480 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:02:00.524 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 07:02:00.524 -07 000000480 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:02:00.524 -07 000000480 INF: Y Motor: Moving 1351 steps-31
17-03-18 07:02:00.534 -07 000000625 INF: FPGA: 'ZDACW 28225' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 07:02:00.534 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:02:00.534 -07 000000541 INF: FPGA: Recv ZDACR 28225
17-03-18 07:02:00.544 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:00.544 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:02:00.544 -07 000000625 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 07:02:00.704 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 07:02:00.704 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 07:02:00.704 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:00.704 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 07:02:00.704 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 07:02:00.704 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:00.714 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:02:00.714 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 07:02:00.714 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 07:02:00.724 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 07:02:00.914 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 07:02:00.914 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 254 ms to get response, and 392 ms overall
17-03-18 07:02:00.974 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:02:00.974 -07 000000512 INF: FPGA: Recv YRDPOS 148169
17-03-18 07:02:00.984 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:02:00.984 -07 000000480 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:02:00.984 -07 000000480 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 07:02:00.984 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.150 mm/sec
17-03-18 07:02:01.914 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:02:01.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:02:01.934 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:02:01.934 -07 000000585 INF: FPGA: Recv YRDPOS 148169
17-03-18 07:02:01.944 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:02:01.944 -07 000000480 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:02:01.974 -07 000000480 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:02:01.974 -07 000000480 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:02:01.974 -07 000000480 INF: Y Motor: Moved to 72.3481 after 1456 ms (table move)
17-03-18 07:02:01.974 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129206 mm (DAC = 28225)
17-03-18 07:02:01.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:01.974 -07 000000512 INF: FPGA: Recv ZSGSRD 29402
17-03-18 07:02:01.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:02:01.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:01.984 -07 000000606 INF: FPGA: Recv ZSGSRD 29403
17-03-18 07:02:01.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:01.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:01.994 -07 000000512 INF: FPGA: Recv ZSGSRD 29391
17-03-18 07:02:02.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.004 -07 000000480 INF: FPGA: Recv ZSGSRD 29397
17-03-18 07:02:02.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.014 -07 000000585 INF: FPGA: Recv ZSGSRD 29399
17-03-18 07:02:02.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.024 -07 000000585 INF: FPGA: Recv ZSGSRD 29403
17-03-18 07:02:02.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.034 -07 000000541 INF: FPGA: Recv ZSGSRD 29409
17-03-18 07:02:02.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.044 -07 000000585 INF: FPGA: Recv ZSGSRD 29405
17-03-18 07:02:02.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.054 -07 000000541 INF: FPGA: Recv ZSGSRD 29405
17-03-18 07:02:02.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.064 -07 000000541 INF: FPGA: Recv ZSGSRD 29397
17-03-18 07:02:02.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:02:02.074 -07 000000585 INF: FPGA: Recv ZPIEZORD 24940
17-03-18 07:02:02.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.084 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.307 V. Piezo Error = -9.8 V.
17-03-18 07:02:02.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29401 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29402 (-128.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29391 (-128.4 uncal um), Max = 29409 (-128.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 07:02:02.084 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29401, posNoise = 8, negNoise = 10
17-03-18 07:02:02.084 -07 000000610 INF: Z Motor: After move to -0.129206, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:02:02.084 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 104 ms (allowed 150 ms), total time = 1562 ms
17-03-18 07:02:02.084 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 07:02:02.134 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 07:02:02.134 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:02:02.134 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.129201613191049. ----------
17-03-18 07:02:02.134 -07 000000610 INF: Cycle	156	Tile	16	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:02:02.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28048, sync = True, waitForSettling = True)
17-03-18 07:02:02.144 -07 000000610 INF: Z Motor: Moving to -0.128396 mm, started at -0.129202 mm, distance = 0.81 um
17-03-18 07:02:02.144 -07 000000610 INF: FPGA: Xmit ZDACW 28048\n [Z Motor]
17-03-18 07:02:02.144 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 07:02:02.154 -07 000000610 INF: FPGA: 'ZDACW 28048' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:02:02.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:02:02.154 -07 000000480 INF: FPGA: Recv ZDACR 28048
17-03-18 07:02:02.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:02:02.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.314 -07 000000480 INF: FPGA: Recv ZSGSRD 29274
17-03-18 07:02:02.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.324 -07 000000480 INF: FPGA: Recv ZSGSRD 29278
17-03-18 07:02:02.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.334 -07 000000585 INF: FPGA: Recv ZSGSRD 29274
17-03-18 07:02:02.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.344 -07 000000585 INF: FPGA: Recv ZSGSRD 29278
17-03-18 07:02:02.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.354 -07 000000585 INF: FPGA: Recv ZSGSRD 29279
17-03-18 07:02:02.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.364 -07 000000474 INF: FPGA: Recv ZSGSRD 29280
17-03-18 07:02:02.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.374 -07 000000611 INF: FPGA: Recv ZSGSRD 29272
17-03-18 07:02:02.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.384 -07 000000480 INF: FPGA: Recv ZSGSRD 29277
17-03-18 07:02:02.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.394 -07 000000474 INF: FPGA: Recv ZSGSRD 29278
17-03-18 07:02:02.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:02.404 -07 000000474 INF: FPGA: Recv ZSGSRD 29276
17-03-18 07:02:02.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:02:02.414 -07 000000474 INF: FPGA: Recv ZPIEZORD 24805
17-03-18 07:02:02.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:02.424 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.280 V. Piezo Error = -9.8 V.
17-03-18 07:02:02.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29277 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29278 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29272 (-127.6 uncal um), Max = 29280 (-127.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:02:02.424 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29277, posNoise = 3, negNoise = 5
17-03-18 07:02:02.424 -07 000000610 INF: Z Motor: After move to -0.128396, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:02:02.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:02:02.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:02:02.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:02:02.424 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:02:02.424 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:02:02.424 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:02:02.424 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:02:02.424 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:02:02.424 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:02:02.424 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:02:02.424 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:02:02.424 -07 000000585 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:02:02.424 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:02:02.424 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:02:02.424 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:02:02.434 -07 000000585 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:02:02.434 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:02:02.434 -07 000000585 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 07:02:02.434 -07 000000585 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:02:02.434 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:02:02.434 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:02:02.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28225 150\n [Camera]
17-03-18 07:02:02.644 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:02:03.114 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:02:03.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:02:03.114 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:02:03.114 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:02:03.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:02:03.114 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:02:03.124 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:02:03.124 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 07:02:03.124 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:02:03.124 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 07:02:03.154 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.026244,
17-03-18 07:02:03.304 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28225 857
17-03-18 07:02:03.454 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:02:03.494 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 07:02:03.494 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 07:02:03.494 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:03.494 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 07:02:03.494 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 07:02:03.504 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:03.504 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:02:03.504 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:02:03.504 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 07:02:03.514 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 07:02:03.684 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:02:03.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:02:03.684 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:02:03.684 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:02:03.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:02:03.684 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:02:03.694 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:02:03.694 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 07:02:03.694 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:02:03.694 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 07:02:03.874 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1428
17-03-18 07:02:03.874 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:02:03.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28225 150' command took 2 ms to send, 1429 ms to get response, and 1436 ms overall
17-03-18 07:02:03.884 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.128826
17-03-18 07:02:03.884 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12883 mm
17-03-18 07:02:03.884 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:02:03.884 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 07:02:03.884 -07 000000606 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 07:02:03.884 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:02:03.884 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 28142, sync = True, waitForSettling = False)
17-03-18 07:02:03.884 -07 000000576 INF: Z Motor: Moving to -0.128826 mm, started at -0.128405 mm, distance = -0.42 um
17-03-18 07:02:03.884 -07 000000480 INF: FPGA: Recv YRDPOS 148169
17-03-18 07:02:03.894 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:02:03.894 -07 000000606 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:02:03.894 -07 000000606 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:02:03.894 -07 000000606 INF: Y Motor: Moving 1351 steps-30
17-03-18 07:02:03.894 -07 000000576 INF: FPGA: Xmit ZDACW 28142\n [Z Motor]
17-03-18 07:02:03.894 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 07:02:03.904 -07 000000576 INF: FPGA: 'ZDACW 28142' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 07:02:03.904 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:02:03.914 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:02:03.914 -07 000000625 INF: FPGA: Recv ZDACR 28142
17-03-18 07:02:03.924 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:02:03.924 -07 000000576 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 07:02:04.074 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:02:04.074 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 07:02:04.074 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:04.084 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:02:04.084 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 07:02:04.084 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 07:02:04.084 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:04.084 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:02:04.084 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 07:02:04.084 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 07:02:04.274 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 07:02:04.274 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 07:02:04.334 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:02:04.334 -07 000000512 INF: FPGA: Recv YRDPOS 149861
17-03-18 07:02:04.344 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:04.344 -07 000000606 INF: Y Motor: Encoder = 149861 = motor step 117078.9 = 73.1743 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:02:04.344 -07 000000606 INF: Y Motor: Position error before settling (table move) = -37 encoder counts (-0.018 mm)
17-03-18 07:02:04.344 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.182 mm/sec
17-03-18 07:02:05.294 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:02:05.294 -07 000000512 INF: FPGA: Recv YRDPOS 149862
17-03-18 07:02:05.304 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:02:05.304 -07 000000606 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:02:05.334 -07 000000606 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:02:05.334 -07 000000606 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:02:05.334 -07 000000606 INF: Y Motor: Moved to 73.1748 after 1449 ms (table move)
17-03-18 07:02:05.334 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128826 mm (DAC = 28142)
17-03-18 07:02:05.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.334 -07 000000625 INF: FPGA: Recv ZSGSRD 29341
17-03-18 07:02:05.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:02:05.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.344 -07 000000606 INF: FPGA: Recv ZSGSRD 29341
17-03-18 07:02:05.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.354 -07 000000541 INF: FPGA: Recv ZSGSRD 29343
17-03-18 07:02:05.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.364 -07 000000625 INF: FPGA: Recv ZSGSRD 29343
17-03-18 07:02:05.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.374 -07 000000606 INF: FPGA: Recv ZSGSRD 29343
17-03-18 07:02:05.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.384 -07 000000576 INF: FPGA: Recv ZSGSRD 29348
17-03-18 07:02:05.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.394 -07 000000625 INF: FPGA: Recv ZSGSRD 29341
17-03-18 07:02:05.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.404 -07 000000541 INF: FPGA: Recv ZSGSRD 29343
17-03-18 07:02:05.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.414 -07 000000512 INF: FPGA: Recv ZSGSRD 29345
17-03-18 07:02:05.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.424 -07 000000606 INF: FPGA: Recv ZSGSRD 29345
17-03-18 07:02:05.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:02:05.434 -07 000000541 INF: FPGA: Recv ZPIEZORD 24874
17-03-18 07:02:05.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.444 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.8 V.
17-03-18 07:02:05.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29343 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29343 (-128.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29341 (-128.0 uncal um), Max = 29348 (-128.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 07:02:05.444 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29343, posNoise = 5, negNoise = 2
17-03-18 07:02:05.444 -07 000000610 INF: Z Motor: After move to -0.128826, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:02:05.444 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 106 ms (allowed 150 ms), total time = 1556 ms
17-03-18 07:02:05.444 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 07:02:05.494 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-18 07:02:05.494 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:02:05.494 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.128829008886827. ----------
17-03-18 07:02:05.494 -07 000000610 INF: Cycle	156	Tile	17	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:02:05.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27965, sync = True, waitForSettling = True)
17-03-18 07:02:05.494 -07 000000610 INF: Z Motor: Moving to -0.128016 mm, started at -0.128829 mm, distance = 0.81 um
17-03-18 07:02:05.494 -07 000000610 INF: FPGA: Xmit ZDACW 27965\n [Z Motor]
17-03-18 07:02:05.494 -07 000000625 INF: FPGA: Recv ZDACW
17-03-18 07:02:05.504 -07 000000610 INF: FPGA: 'ZDACW 27965' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:02:05.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:02:05.504 -07 000000480 INF: FPGA: Recv ZDACR 27965
17-03-18 07:02:05.514 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:02:05.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.664 -07 000000576 INF: FPGA: Recv ZSGSRD 29223
17-03-18 07:02:05.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:02:05.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.674 -07 000000541 INF: FPGA: Recv ZSGSRD 29219
17-03-18 07:02:05.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.684 -07 000000606 INF: FPGA: Recv ZSGSRD 29217
17-03-18 07:02:05.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.694 -07 000000480 INF: FPGA: Recv ZSGSRD 29220
17-03-18 07:02:05.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.704 -07 000000625 INF: FPGA: Recv ZSGSRD 29218
17-03-18 07:02:05.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.714 -07 000000480 INF: FPGA: Recv ZSGSRD 29220
17-03-18 07:02:05.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.724 -07 000000512 INF: FPGA: Recv ZSGSRD 29214
17-03-18 07:02:05.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.734 -07 000000606 INF: FPGA: Recv ZSGSRD 29215
17-03-18 07:02:05.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.744 -07 000000512 INF: FPGA: Recv ZSGSRD 29219
17-03-18 07:02:05.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:05.754 -07 000000480 INF: FPGA: Recv ZSGSRD 29214
17-03-18 07:02:05.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:02:05.764 -07 000000512 INF: FPGA: Recv ZPIEZORD 24714
17-03-18 07:02:05.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:05.774 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.9 V.
17-03-18 07:02:05.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29218 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29218 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29214 (-127.2 uncal um), Max = 29223 (-127.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:02:05.774 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29218, posNoise = 5, negNoise = 4
17-03-18 07:02:05.774 -07 000000610 INF: Z Motor: After move to -0.128016, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:02:05.774 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:02:05.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:02:05.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:02:05.774 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:02:05.774 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:02:05.774 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:02:05.774 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:02:05.774 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:02:05.774 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:02:05.774 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:02:05.774 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:02:05.774 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:02:05.774 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:02:05.784 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:02:05.784 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:02:05.784 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:02:05.784 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:02:05.794 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:02:05.794 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:02:05.794 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:02:05.794 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:02:05.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28142 150\n [Camera]
17-03-18 07:02:05.994 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:02:06.474 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-18 07:02:06.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-18 07:02:06.474 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:02:06.474 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-18 07:02:06.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-18 07:02:06.474 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:02:06.484 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:02:06.484 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:02:06.484 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:02:06.484 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 07:02:06.664 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28142 857
17-03-18 07:02:06.814 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:02:06.854 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 07:02:06.854 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 07:02:06.854 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:06.854 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 07:02:06.854 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:02:06.854 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 07:02:06.854 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:06.864 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:02:06.864 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:02:06.864 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 07:02:06.914 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:02:06.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:02:07.044 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:02:07.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:02:07.044 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:02:07.164 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:02:07.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:02:07.164 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:02:07.174 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:02:07.174 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 07:02:07.174 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:02:07.174 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 07:02:07.234 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:02:07.234 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:02:07.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28142 150' command took 2 ms to send, 1423 ms to get response, and 1433 ms overall
17-03-18 07:02:07.234 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128027
17-03-18 07:02:07.234 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12803 mm
17-03-18 07:02:07.234 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:02:07.234 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 27967, sync = True, waitForSettling = False)
17-03-18 07:02:07.234 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 07:02:07.234 -07 000000480 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 07:02:07.244 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:02:07.244 -07 000000501 INF: FPGA: Recv YRDPOS 149862
17-03-18 07:02:07.254 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:02:07.254 -07 000000480 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:02:07.254 -07 000000480 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:02:07.254 -07 000000480 INF: Y Motor: Moving 1356 steps-37
17-03-18 07:02:07.254 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:02:07.544 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 07:02:07.544 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 07:02:07.544 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:07.544 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 07:02:07.544 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 07:02:07.544 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:07.554 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:02:07.554 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:02:07.554 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-18 07:02:07.554 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 07:02:07.624 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 07:02:07.624 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 07:02:07.674 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:02:07.674 -07 000000012 INF: FPGA: Recv YRDPOS 151566
17-03-18 07:02:07.684 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:02:07.684 -07 000000480 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:02:07.684 -07 000000480 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 07:02:07.684 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.848 mm, average velocity = 2.243 mm/sec
17-03-18 07:02:08.514 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 4.000345,
17-03-18 07:02:08.634 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:02:08.634 -07 000000561 INF: FPGA: Recv YRDPOS 151566
17-03-18 07:02:08.644 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:02:08.644 -07 000000480 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:02:08.664 -07 000000480 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:02:08.664 -07 000000480 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:02:08.664 -07 000000480 INF: Y Motor: Moved to 74.0068 after 1427 ms (table move)
17-03-18 07:02:08.674 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128025 mm (DAC = 27967)
17-03-18 07:02:08.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:08.674 -07 000000561 INF: FPGA: Recv ZSGSRD 29345
17-03-18 07:02:08.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:08.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:08.684 -07 000000480 INF: FPGA: Recv ZSGSRD 29348
17-03-18 07:02:08.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:08.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:08.694 -07 000000480 INF: FPGA: Recv ZSGSRD 29342
17-03-18 07:02:08.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:08.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:08.704 -07 000000012 INF: FPGA: Recv ZSGSRD 29340
17-03-18 07:02:08.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:08.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:08.714 -07 000000012 INF: FPGA: Recv ZSGSRD 29338
17-03-18 07:02:08.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:08.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:08.724 -07 000000012 INF: FPGA: Recv ZSGSRD 29342
17-03-18 07:02:08.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:08.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:08.734 -07 000000012 INF: FPGA: Recv ZSGSRD 29346
17-03-18 07:02:08.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:08.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:08.744 -07 000000480 INF: FPGA: Recv ZSGSRD 29341
17-03-18 07:02:08.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:08.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:08.754 -07 000000512 INF: FPGA: Recv ZSGSRD 29346
17-03-18 07:02:08.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:08.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:08.764 -07 000000480 INF: FPGA: Recv ZSGSRD 29344
17-03-18 07:02:08.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:08.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:02:08.774 -07 000000012 INF: FPGA: Recv ZPIEZORD 24907
17-03-18 07:02:08.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:08.784 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.5 V.
17-03-18 07:02:08.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29343 (-128.1 uncal um), Error = 0.0 uncal um, Median = 29343 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29338 (-128.0 uncal um), Max = 29348 (-128.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:02:08.784 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29343, posNoise = 5, negNoise = 5
17-03-18 07:02:08.784 -07 000000610 INF: Z Motor: After move to -0.128025, error = -0.000804, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:02:08.784 -07 000000610 INF: Z Motor: Settle wait time = 3174 ms, measure time = 111 ms (allowed 150 ms), total time = 3285 ms
17-03-18 07:02:08.784 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 07:02:08.824 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-18 07:02:08.824 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:02:08.824 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.128829008886827. ----------
17-03-18 07:02:08.824 -07 000000610 INF: Cycle	156	Tile	18	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:02:08.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27791, sync = True, waitForSettling = True)
17-03-18 07:02:08.824 -07 000000610 INF: Z Motor: Moving to -0.127219 mm, started at -0.128829 mm, distance = 1.61 um
17-03-18 07:02:08.824 -07 000000610 INF: FPGA: Xmit ZDACW 27791\n [Z Motor]
17-03-18 07:02:08.824 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 07:02:08.834 -07 000000610 INF: FPGA: 'ZDACW 27791' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:02:08.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:02:08.834 -07 000000012 INF: FPGA: Recv ZDACR 27791
17-03-18 07:02:08.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:08.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:02:08.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:08.994 -07 000000480 INF: FPGA: Recv ZSGSRD 29090
17-03-18 07:02:09.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:02:09.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:09.004 -07 000000012 INF: FPGA: Recv ZSGSRD 29096
17-03-18 07:02:09.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:09.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:09.014 -07 000000561 INF: FPGA: Recv ZSGSRD 29092
17-03-18 07:02:09.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:09.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:09.024 -07 000000576 INF: FPGA: Recv ZSGSRD 29094
17-03-18 07:02:09.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:09.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:09.034 -07 000000480 INF: FPGA: Recv ZSGSRD 29093
17-03-18 07:02:09.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:09.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:09.044 -07 000000512 INF: FPGA: Recv ZSGSRD 29091
17-03-18 07:02:09.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:09.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:09.054 -07 000000501 INF: FPGA: Recv ZSGSRD 29092
17-03-18 07:02:09.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:09.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:09.064 -07 000000012 INF: FPGA: Recv ZSGSRD 29093
17-03-18 07:02:09.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:09.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:09.074 -07 000000576 INF: FPGA: Recv ZSGSRD 29091
17-03-18 07:02:09.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:09.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:09.084 -07 000000561 INF: FPGA: Recv ZSGSRD 29094
17-03-18 07:02:09.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:09.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:02:09.094 -07 000000576 INF: FPGA: Recv ZPIEZORD 24560
17-03-18 07:02:09.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:09.104 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.241 V. Piezo Error = -9.9 V.
17-03-18 07:02:09.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.2 um, Read 10 ADC samples: Avg = 29093 (-126.5 uncal um), Error = 0.8 uncal um, Median = 29092 (-126.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29090 (-126.4 uncal um), Max = 29096 (-126.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 07:02:09.104 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29093, posNoise = 3, negNoise = 3
17-03-18 07:02:09.104 -07 000000610 INF: Z Motor: After move to -0.127219, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:02:09.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:02:09.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:02:09.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:02:09.104 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:02:09.104 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:02:09.104 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:02:09.104 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:02:09.104 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:02:09.104 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:02:09.104 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:02:09.104 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:02:09.104 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:02:09.104 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:02:09.114 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:02:09.114 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:02:09.114 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:02:09.114 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:02:09.124 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:02:09.124 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:02:09.124 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:02:09.124 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:02:09.134 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 27967 150\n [Camera]
17-03-18 07:02:09.334 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:02:09.804 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:02:09.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:02:09.804 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:02:09.804 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:02:09.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:02:09.804 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:02:09.804 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:02:09.804 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) start.
17-03-18 07:02:09.804 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:02:09.804 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 07:02:09.994 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27967 857
17-03-18 07:02:10.144 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:02:10.194 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 07:02:10.194 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:02:10.194 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:10.194 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2571421344, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 07:02:10.194 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:02:10.194 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:10.194 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:02:10.194 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 07:02:10.204 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:02:10.204 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 07:02:10.374 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1235
17-03-18 07:02:10.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1235
17-03-18 07:02:10.374 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:02:10.374 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:02:10.374 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) start.
17-03-18 07:02:10.384 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1235
17-03-18 07:02:10.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1235
17-03-18 07:02:10.384 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:02:10.494 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:02:10.504 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 07:02:10.564 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-18 07:02:10.564 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:02:10.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 27967 150' command took 2 ms to send, 1425 ms to get response, and 1433 ms overall
17-03-18 07:02:10.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 07:02:10.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0068359375, Z-Position -0.127222955851387. ------
17-03-18 07:02:10.574 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:02:10.574 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13359 mm
17-03-18 07:02:10.574 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:02:10.574 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:02:10.574 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29183, sync = True, waitForSettling = False)
17-03-18 07:02:10.574 -07 000000561 INF: Z Motor: Moving to -0.133591 mm, started at -0.127223 mm, distance = -6.37 um
17-03-18 07:02:10.574 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 07:02:10.574 -07 000000461 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 07:02:10.584 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:10.584 -07 000000561 INF: FPGA: Xmit ZDACW 29183\n [Z Motor]
17-03-18 07:02:10.584 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 07:02:10.594 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:02:10.594 -07 000000561 INF: FPGA: 'ZDACW 29183' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 07:02:10.594 -07 000000585 INF: FPGA: Recv YRDPOS 151566
17-03-18 07:02:10.604 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:02:10.604 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 07:02:10.604 -07 000000461 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:02:10.604 -07 000000461 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:02:10.604 -07 000000461 INF: Y Motor: Moving 1353 steps-32
17-03-18 07:02:10.614 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:02:10.614 -07 000000611 INF: FPGA: Recv ZDACR 29183
17-03-18 07:02:10.624 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:02:10.624 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:02:10.624 -07 000000561 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 07:02:10.754 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2606843608, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 07:02:10.754 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 07:02:10.754 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:10.764 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:02:10.764 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:02:10.804 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:02:10.804 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 07:02:10.874 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 07:02:10.874 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 07:02:10.874 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:10.874 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:02:10.884 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-18 07:02:10.994 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 07:02:10.994 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:02:11.034 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:02:11.034 -07 000000625 INF: FPGA: Recv YRDPOS 153253
17-03-18 07:02:11.044 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:02:11.044 -07 000000461 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:02:11.044 -07 000000461 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 07:02:11.044 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-18 07:02:11.914 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:02:11.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 155. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval.
17-03-18 07:02:11.994 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:02:11.994 -07 000000480 INF: FPGA: Recv YRDPOS 153253
17-03-18 07:02:12.004 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:02:12.004 -07 000000461 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:02:12.024 -07 000000461 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:02:12.024 -07 000000461 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:02:12.024 -07 000000461 INF: Y Motor: Moved to 74.8306 after 1447 ms (table move)
17-03-18 07:02:12.024 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133591 mm (DAC = 29183)
17-03-18 07:02:12.024 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:12.024 -07 000000437 INF: FPGA: Recv ZSGSRD 30085
17-03-18 07:02:12.034 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:02:12.034 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:12.034 -07 000000461 INF: FPGA: Recv ZSGSRD 30078
17-03-18 07:02:12.044 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:12.044 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:12.044 -07 000000437 INF: FPGA: Recv ZSGSRD 30082
17-03-18 07:02:12.054 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:12.054 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:12.054 -07 000000625 INF: FPGA: Recv ZSGSRD 30084
17-03-18 07:02:12.064 -07 000000012 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:12.064 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:12.064 -07 000000474 INF: FPGA: Recv ZSGSRD 30090
17-03-18 07:02:12.074 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:12.074 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:12.074 -07 000000625 INF: FPGA: Recv ZSGSRD 30095
17-03-18 07:02:12.084 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:12.084 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:12.084 -07 000000474 INF: FPGA: Recv ZSGSRD 30090
17-03-18 07:02:12.094 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:12.094 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:12.094 -07 000000585 INF: FPGA: Recv ZSGSRD 30080
17-03-18 07:02:12.104 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:12.104 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:12.104 -07 000000625 INF: FPGA: Recv ZSGSRD 30078
17-03-18 07:02:12.114 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:12.114 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:12.114 -07 000000611 INF: FPGA: Recv ZSGSRD 30081
17-03-18 07:02:12.124 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:12.124 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:02:12.124 -07 000000474 INF: FPGA: Recv ZPIEZORD 25878
17-03-18 07:02:12.134 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:12.134 -07 000000012 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.453 V. Piezo Error = -9.2 V.
17-03-18 07:02:12.134 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30084 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30083 (-132.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30078 (-132.8 uncal um), Max = 30095 (-132.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:02:12.134 -07 000000012 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30084, posNoise = 11, negNoise = 6
17-03-18 07:02:12.134 -07 000000012 INF: Z Motor: After move to -0.133591, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:02:12.134 -07 000000012 INF: Z Motor: Settle wait time = 1451 ms, measure time = 105 ms (allowed 150 ms), total time = 1556 ms
17-03-18 07:02:12.134 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:02:12.184 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 07:02:12.184 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:02:12.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:02:12.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:02:12.184 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:02:12.184 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:02:12.184 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:02:12.184 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:02:12.184 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 07:02:12.184 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:02:12.194 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:02:12.194 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:02:12.204 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 07:02:12.204 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 07:02:12.204 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:02:12.244 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:02:12.544 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:02:12.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:02:12.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:02:12.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 07:02:12.584 -07 000000474 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:02:12.584 -07 000000611 INF: FPGA: Recv CAMSNAP
17-03-18 07:02:12.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 07:02:12.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 07:02:12.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:12.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:02:12.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 07:02:12.784 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:02:12.784 -07 000000480 INF: Autofocus start
17-03-18 07:02:12.784 -07 000000480 INF: MeasureProfile start
17-03-18 07:02:12.784 -07 000000474 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:02:12.794 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:02:12.794 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:02:12.794 -07 000000480 INF: MeasureProfile done
17-03-18 07:02:12.794 -07 000000480 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 07:02:12.794 -07 000000480 INF: Autofocus finished
17-03-18 07:02:12.994 -07 000000585 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:02:12.994 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:02:12.994 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.133589350083872. ----------
17-03-18 07:02:12.994 -07 000000610 INF: Cycle	156	Tile	19	Exposure Settings		A	472	G	227	T	227	C	472
17-03-18 07:02:13.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27678, sync = True, waitForSettling = True)
17-03-18 07:02:13.004 -07 000000610 INF: Z Motor: Moving to -0.126702 mm, started at -0.133589 mm, distance = 6.89 um
17-03-18 07:02:13.004 -07 000000610 INF: FPGA: Xmit ZDACW 27678\n [Z Motor]
17-03-18 07:02:13.004 -07 000000585 INF: FPGA: Recv ZDACW
17-03-18 07:02:13.014 -07 000000610 INF: FPGA: 'ZDACW 27678' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:02:13.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:02:13.014 -07 000000561 INF: FPGA: Recv ZDACR 27678
17-03-18 07:02:13.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:13.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:02:13.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:13.174 -07 000000474 INF: FPGA: Recv ZSGSRD 29015
17-03-18 07:02:13.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:02:13.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:13.184 -07 000000437 INF: FPGA: Recv ZSGSRD 29019
17-03-18 07:02:13.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:13.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:13.194 -07 000000012 INF: FPGA: Recv ZSGSRD 29013
17-03-18 07:02:13.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:13.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:13.204 -07 000000480 INF: FPGA: Recv ZSGSRD 29011
17-03-18 07:02:13.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:13.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:13.214 -07 000000512 INF: FPGA: Recv ZSGSRD 29011
17-03-18 07:02:13.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:13.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:13.224 -07 000000611 INF: FPGA: Recv ZSGSRD 29014
17-03-18 07:02:13.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:13.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:13.234 -07 000000625 INF: FPGA: Recv ZSGSRD 29011
17-03-18 07:02:13.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:13.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:13.244 -07 000000480 INF: FPGA: Recv ZSGSRD 29014
17-03-18 07:02:13.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:13.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:13.254 -07 000000512 INF: FPGA: Recv ZSGSRD 29014
17-03-18 07:02:13.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:13.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:02:13.264 -07 000000611 INF: FPGA: Recv ZSGSRD 29011
17-03-18 07:02:13.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:13.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:02:13.274 -07 000000625 INF: FPGA: Recv ZPIEZORD 24498
17-03-18 07:02:13.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:02:13.284 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.223 V. Piezo Error = -9.9 V.
17-03-18 07:02:13.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.7 um, Read 10 ADC samples: Avg = 29013 (-125.9 uncal um), Error = 0.8 uncal um, Median = 29014 (-125.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29011 (-125.9 uncal um), Max = 29019 (-126.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 07:02:13.284 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29013, posNoise = 6, negNoise = 2
17-03-18 07:02:13.284 -07 000000610 INF: Z Motor: After move to -0.126702, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:02:13.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 07:02:13.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:02:13.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:02:13.284 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:02:13.284 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:02:13.284 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:02:13.284 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:02:13.284 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:02:13.284 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:02:13.284 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 07:02:13.284 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:02:13.284 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 07:02:13.284 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:02:13.294 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:02:13.294 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:02:13.294 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:02:13.294 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:02:13.304 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:02:13.304 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 07:02:13.304 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 07:02:13.304 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:02:13.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 27855 150\n [Camera]
17-03-18 07:02:13.504 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:02:13.874 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.963579,
17-03-18 07:02:13.974 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-18 07:02:13.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-18 07:02:13.974 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:02:13.984 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-18 07:02:13.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-18 07:02:13.984 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:02:13.984 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:02:13.984 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2571421344, 0x0, 391868352) start.
17-03-18 07:02:13.984 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:02:13.984 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 07:02:14.164 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27855 857
17-03-18 07:02:14.314 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-18 07:02:14.364 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 07:02:14.364 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 07:02:14.364 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:14.364 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2571421344, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 07:02:14.364 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:02:14.364 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:14.364 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:02:14.374 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:02:14.374 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 07:02:14.374 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 07:02:14.544 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-18 07:02:14.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-18 07:02:14.544 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:02:14.544 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-18 07:02:14.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-18 07:02:14.554 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:02:14.554 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:02:14.554 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) start.
17-03-18 07:02:14.554 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:02:14.554 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 07:02:14.734 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-18 07:02:14.734 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:02:14.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 27855 150' command took 2 ms to send, 1427 ms to get response, and 1433 ms overall
17-03-18 07:02:14.924 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2642265872, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 07:02:14.934 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 07:02:14.934 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:14.934 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:02:14.934 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:02:14.934 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 07:02:14.934 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:02:14.934 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:02:14.934 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 07:02:14.934 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 07:02:14.944 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 07:02:14.984 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-18 07:02:14.984 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 07:02:15.024 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 07:02:15.034 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 07:02:15.034 -07 000000610 INF: Imaging Cycle 156: ScanTilesCommand Cycle 156 time end. Duration was 148582 ms.
17-03-18 07:02:15.034 -07 000000610 INF: =================== Cycle #156 ===================
17-03-18 07:02:15.034 -07 000000610 INF: ===================  ===================
17-03-18 07:02:15.034 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 07:02:15.034 -07 000000480 INF: FPGA: Recv EXLED1ADCR 28
17-03-18 07:02:15.044 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:02:15.044 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 28 --> 0.0 mW (old method), or 2.1 mW (new method). Difference = 2.1 mW
17-03-18 07:02:15.044 -07 000000501 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 156, FrontChillerTemperature: 3.963579, FrontChillerHeatSinkTemperature: 0.261546, AmbientTemperature: 18.72511, FlowCellCompartmentTemperature: 21.99692, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.54614, GreenLEDSensorTemperature: 25.78476, PhotodiodePowerAdcGreen: 28, PhotodiodePowerMwGreen: 2.10942
17-03-18 07:02:15.164 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.