17-03-18 07:02:15.224 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:02:15.224 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True) 17-03-18 07:02:15.224 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8306 mm, delta = 0.5500 mm 17-03-18 07:02:15.224 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:02:15.234 -07 000000480 INF: FPGA: Recv YRDPOS 153253 17-03-18 07:02:15.234 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-18 07:02:15.234 -07 000000610 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:02:15.234 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False 17-03-18 07:02:15.234 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts 17-03-18 07:02:15.234 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor] 17-03-18 07:02:15.344 -07 000000569 INF: FPGA: Recv YMVTO 154378 874 17-03-18 07:02:15.344 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 115 ms overall 17-03-18 07:02:15.344 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm) 17-03-18 07:02:15.344 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 880 steps, but required 874 steps (0.546 mm). Slippage = -0.004 mm (-0.01%). 17-03-18 07:02:15.344 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 115 ms, distance = 0.550 mm, average velocity = 4.783 mm/sec 17-03-18 07:02:16.914 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:02:16.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2048, R2=2133, Total=4181. Warn if over 250 bubbles per interval. 17-03-18 07:02:18.344 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:02:18.354 -07 000000501 INF: FPGA: Recv YRDPOS 154379 17-03-18 07:02:18.354 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-18 07:02:18.354 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:02:18.374 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:02:18.374 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 07:02:18.374 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3149 ms 17-03-18 07:02:18.384 -07 000000610 INF: =================== Cycle #157, Flow Cell Temp 60° =================== 17-03-18 07:02:18.384 -07 000000610 INF: =================== Cycle #157, Flow Cell Temp 60°, FC temperature to 60° =================== 17-03-18 07:02:18.384 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl] 17-03-18 07:02:18.384 -07 000000480 INF: FPGA: Recv TEC2TEMP 17-03-18 07:02:18.394 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:02:18.394 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-18 07:02:18.394 -07 000000569 INF: FPGA: Recv TEC2EN 17-03-18 07:02:18.404 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:02:18.404 -07 000000610 INF: =================== Cycle #157, Flow Cell Temp 60° =================== 17-03-18 07:02:18.404 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:02:18.404 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-18 07:02:18.404 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:02:18.434 -07 000000610 INF: ReagentValve: Recv 18\r 17-03-18 07:02:18.434 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions. 17-03-18 07:02:18.434 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-18 07:02:18.734 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 07:02:18.754 -07 000000610 INF: ReagentValve: Recv 0278\r 17-03-18 07:02:18.754 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%) 17-03-18 07:02:18.804 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:02:18.824 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 07:02:18.824 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 07:02:18.924 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:02:18.924 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1 17-03-18 07:02:18.994 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:19.024 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-18 07:02:19.024 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-18 07:02:19.024 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 07:02:19.154 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r 17-03-18 07:02:19.194 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:19.234 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.930828, 17-03-18 07:02:21.914 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1 17-03-18 07:02:21.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:02:22.324 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:22.354 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:22.774 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:22.804 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:23.224 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:23.254 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:23.254 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete 17-03-18 07:02:23.254 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:02:23.384 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:23.414 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 07:02:23.414 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 07:02:23.544 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:23.574 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 07:02:23.574 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 07:02:23.574 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 07:02:23.704 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 07:02:23.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:24.164 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:24.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:24.194 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-18 07:02:24.194 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:02:24.594 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.955391, 17-03-18 07:02:25.414 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-18 07:02:25.414 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start 17-03-18 07:02:25.414 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:02:25.434 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 07:02:25.434 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions. 17-03-18 07:02:25.434 -07 000000610 INF: ReagentValve: Xmit +04\r 17-03-18 07:02:25.574 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 07:02:25.594 -07 000000610 INF: ReagentValve: Recv 00CD\r 17-03-18 07:02:25.594 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%) 17-03-18 07:02:25.644 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:02:25.664 -07 000000610 INF: ReagentValve: Recv 04\r 17-03-18 07:02:25.664 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 07:02:25.764 -07 000000610 INF: =================== Cycle #157, Pumping Reagent CMS (4) =================== 17-03-18 07:02:25.764 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-18 07:02:25.764 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:25.794 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 07:02:25.794 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 07:02:25.794 -07 000000610 INF: =================== Cycle #157, Pumping Reagent CMS (4), Aspirating port InputPort =================== 17-03-18 07:02:25.924 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-18 07:02:25.964 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:26.914 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:02:26.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:02:27.404 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:27.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:27.854 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:27.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:27.884 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-18 07:02:27.884 -07 000000610 INF: =================== Cycle #157, Pumping Reagent CMS (4) =================== 17-03-18 07:02:28.014 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:28.044 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 07:02:28.044 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 07:02:28.174 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:28.204 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 07:02:28.204 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 07:02:28.204 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 07:02:28.334 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 07:02:28.364 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:28.794 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:28.824 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:28.824 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 07:02:28.824 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:02:30.044 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-18 07:02:30.044 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-18 07:02:30.044 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:02:30.674 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.993549, 17-03-18 07:02:30.694 -07 000000610 INF: ReagentValve: Recv 04\r 17-03-18 07:02:30.694 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions. 17-03-18 07:02:30.694 -07 000000610 INF: ReagentValve: Xmit -03\r 17-03-18 07:02:30.844 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 07:02:30.864 -07 000000610 INF: ReagentValve: Recv 00E1\r 17-03-18 07:02:30.864 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%) 17-03-18 07:02:30.914 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:02:30.934 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 07:02:30.934 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 07:02:31.034 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:02:31.034 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-18 07:02:31.034 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:31.064 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 07:02:31.064 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 07:02:31.064 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 07:02:31.194 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-18 07:02:31.234 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:31.914 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:02:31.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:02:32.104 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:32.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:32.134 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete 17-03-18 07:02:32.134 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:02:32.264 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:32.294 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 07:02:32.294 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-18 07:02:32.424 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:32.454 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 07:02:32.454 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-18 07:02:32.454 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 07:02:32.584 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 07:02:32.614 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:33.044 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:33.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:33.074 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 07:02:33.074 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:02:33.074 -07 000000512 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 07:02:33.074 -07 000000606 INF: WaitCommand(10000) start 17-03-18 07:02:33.074 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-18 07:02:34.294 -07 000000512 INF: AsyncDelayTimer waited 1215ms 17-03-18 07:02:34.294 -07 000000512 INF: LanePump: Xmit /1?\r 17-03-18 07:02:34.324 -07 000000512 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 07:02:34.324 -07 000000512 INF: LanePump: Current Position of Pump is: 1110 17-03-18 07:02:34.454 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r 17-03-18 07:02:34.494 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:36.024 -07 000000512 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:36.044 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.019446, 17-03-18 07:02:36.054 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:36.474 -07 000000512 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:36.504 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:36.504 -07 000000512 INF: LanePump: Waited 2009 ms for pump motion to complete 17-03-18 07:02:36.504 -07 000000512 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 07:02:36.504 -07 000000512 INF: =================== =================== 17-03-18 07:02:36.914 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:02:36.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:02:42.054 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:02:42.054 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:02:42.054 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.019446, 17-03-18 07:02:43.084 -07 000000606 INF: WaitCommand(10000) end 17-03-18 07:02:43.084 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:02:43.084 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1 17-03-18 07:02:43.084 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:43.114 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-18 07:02:43.114 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-18 07:02:43.114 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 07:02:43.244 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r 17-03-18 07:02:43.284 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:46.914 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:02:46.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:02:47.414 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.012614, 17-03-18 07:02:49.414 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:49.444 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:49.864 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:49.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:50.314 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:50.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:50.764 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:50.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:51.214 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:51.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:51.244 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete 17-03-18 07:02:51.244 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:02:51.374 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:51.404 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-18 07:02:51.404 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-18 07:02:51.534 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:51.564 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-18 07:02:51.564 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-18 07:02:51.564 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 07:02:51.694 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 07:02:51.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:51.914 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:02:51.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:02:52.154 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:52.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:52.184 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-18 07:02:52.184 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:02:52.784 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.986717, 17-03-18 07:02:53.404 -07 000000610 INF: AsyncDelayTimer waited 1217ms 17-03-18 07:02:53.404 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start 17-03-18 07:02:53.404 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:02:53.834 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 07:02:53.834 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions. 17-03-18 07:02:53.834 -07 000000610 INF: ReagentValve: Xmit -01\r 17-03-18 07:02:54.044 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 07:02:54.064 -07 000000610 INF: ReagentValve: Recv 0198\r 17-03-18 07:02:54.064 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%) 17-03-18 07:02:54.114 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:02:54.134 -07 000000610 INF: ReagentValve: Recv 01\r 17-03-18 07:02:54.134 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 07:02:54.234 -07 000000610 INF: =================== Cycle #157, Pumping Reagent IMT (1) =================== 17-03-18 07:02:54.234 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-18 07:02:54.314 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:54.344 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-18 07:02:54.344 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-18 07:02:54.344 -07 000000610 INF: =================== Cycle #157, Pumping Reagent IMT (1), Aspirating port InputPort =================== 17-03-18 07:02:54.474 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-18 07:02:54.514 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:55.954 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:55.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:02:56.404 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:56.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:56.434 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-18 07:02:56.434 -07 000000610 INF: =================== Cycle #157, Pumping Reagent IMT (1) =================== 17-03-18 07:02:56.564 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:56.594 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-18 07:02:56.594 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-18 07:02:56.724 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:56.754 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-18 07:02:56.754 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-18 07:02:56.754 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 07:02:56.884 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 07:02:56.914 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:56.914 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:02:56.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:02:57.344 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:02:57.374 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:02:57.374 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-18 07:02:57.374 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:02:58.594 -07 000000610 INF: AsyncDelayTimer waited 1218ms 17-03-18 07:02:58.594 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-18 07:02:58.594 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:02:58.614 -07 000000610 INF: ReagentValve: Recv 01\r 17-03-18 07:02:58.614 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions. 17-03-18 07:02:58.614 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-18 07:02:58.844 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 07:02:58.864 -07 000000610 INF: ReagentValve: Recv 01AC\r 17-03-18 07:02:58.864 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%) 17-03-18 07:02:58.914 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:02:58.934 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 07:02:58.934 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 07:02:59.034 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:02:59.034 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-18 07:02:59.034 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:02:59.064 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-18 07:02:59.064 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-18 07:02:59.064 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 07:02:59.144 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.99219, 17-03-18 07:02:59.194 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-18 07:02:59.234 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:03:00.104 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:03:00.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:03:00.134 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete 17-03-18 07:03:00.134 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:03:00.264 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:03:00.294 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-18 07:03:00.294 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-18 07:03:00.424 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:03:00.454 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-18 07:03:00.454 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-18 07:03:00.454 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 07:03:00.584 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 07:03:00.614 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:03:01.044 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:03:01.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:03:01.074 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-18 07:03:01.074 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:03:01.074 -07 000000610 INF: =================== Cycle #157, Flow Cell Temp 65° =================== 17-03-18 07:03:01.074 -07 000000610 INF: =================== Cycle #157, Flow Cell Temp 65°, FC temperature to 65° =================== 17-03-18 07:03:01.074 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl] 17-03-18 07:03:01.074 -07 000000437 INF: FPGA: Recv TEC2TEMP 17-03-18 07:03:01.084 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:03:01.084 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-18 07:03:01.084 -07 000000512 INF: FPGA: Recv TEC2EN 17-03-18 07:03:01.094 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:03:01.094 -07 000000610 INF: =================== Cycle #157, Flow Cell Temp 65° =================== 17-03-18 07:03:01.094 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:03:01.094 -07 000000610 INF: WaitCommand(30000) start 17-03-18 07:03:01.914 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:03:01.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:03:04.504 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.003063, 17-03-18 07:03:06.914 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:03:06.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:03:09.874 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.016692, 17-03-18 07:03:11.914 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:03:11.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:03:15.234 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.012614, 17-03-18 07:03:16.914 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:03:16.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:03:20.594 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.999021, 17-03-18 07:03:21.914 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:03:21.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:03:25.954 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.975845, 17-03-18 07:03:26.914 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:03:26.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:03:31.104 -07 000000610 INF: WaitCommand(30000) end 17-03-18 07:03:31.104 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:03:31.104 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1 17-03-18 07:03:31.204 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:03:31.244 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-18 07:03:31.244 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-18 07:03:31.244 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 07:03:31.374 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r 17-03-18 07:03:31.414 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:03:31.914 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:03:31.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:03:31.954 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:03:31.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:03:31.984 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete 17-03-18 07:03:31.984 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:03:32.094 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.970374, 17-03-18 07:03:32.114 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:03:32.144 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-18 07:03:32.144 -07 000000610 INF: LanePump: Current Position of Pump is: 1920 17-03-18 07:03:32.274 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:03:32.304 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-18 07:03:32.304 -07 000000610 INF: LanePump: Current Position of Pump is: 1920 17-03-18 07:03:32.304 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 07:03:32.434 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 07:03:32.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:03:32.894 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:03:32.924 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:03:32.924 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 07:03:32.924 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:03:32.924 -07 000000576 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 07:03:32.924 -07 000000576 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-18 07:03:32.924 -07 000000581 INF: WaitCommand(30000) start 17-03-18 07:03:34.144 -07 000000576 INF: AsyncDelayTimer waited 1216ms 17-03-18 07:03:34.144 -07 000000576 INF: LanePump: Xmit /1?\r 17-03-18 07:03:34.174 -07 000000576 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-18 07:03:34.174 -07 000000576 INF: LanePump: Current Position of Pump is: 1920 17-03-18 07:03:34.304 -07 000000576 INF: LanePump: Xmit /1V1500OA0R\r 17-03-18 07:03:34.344 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:03:36.684 -07 000000576 INF: LanePump: Xmit /1Q\r 17-03-18 07:03:36.714 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:03:36.914 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:03:36.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:03:37.134 -07 000000576 INF: LanePump: Xmit /1Q\r 17-03-18 07:03:37.164 -07 000000576 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:03:37.164 -07 000000576 INF: LanePump: Waited 2819 ms for pump motion to complete 17-03-18 07:03:37.164 -07 000000576 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 07:03:37.164 -07 000000576 INF: =================== =================== 17-03-18 07:03:37.464 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.983999, 17-03-18 07:03:41.914 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:03:41.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:03:42.834 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.003063, 17-03-18 07:03:46.914 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:03:46.914 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:03:48.204 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.008536, 17-03-18 07:03:51.914 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:03:51.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:03:53.564 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.996267, 17-03-18 07:03:56.914 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:03:56.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:03:58.924 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.996267, 17-03-18 07:04:01.914 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:04:01.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:04:02.934 -07 000000581 INF: WaitCommand(30000) end 17-03-18 07:04:02.934 -07 000000610 INF: =================== Cycle #157, Flow Cell Temp 22° =================== 17-03-18 07:04:02.934 -07 000000610 INF: =================== Cycle #157, Flow Cell Temp 22°, FC temperature to 22° =================== 17-03-18 07:04:02.934 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl] 17-03-18 07:04:02.934 -07 000000591 INF: FPGA: Recv TEC2TEMP 17-03-18 07:04:02.944 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:04:02.944 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-18 07:04:02.944 -07 000000625 INF: FPGA: Recv TEC2EN 17-03-18 07:04:02.954 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:02.954 -07 000000610 INF: =================== Cycle #157, Flow Cell Temp 22° =================== 17-03-18 07:04:02.954 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:04:02.954 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:04:02.954 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1 17-03-18 07:04:02.954 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:04:02.994 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-18 07:04:02.994 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-18 07:04:02.994 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 07:04:03.124 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r 17-03-18 07:04:03.164 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:04:04.284 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.979922, 17-03-18 07:04:06.294 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:04:06.324 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:04:06.744 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:04:06.774 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:04:06.924 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:04:06.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:04:07.194 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:04:07.224 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:04:07.224 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete 17-03-18 07:04:07.224 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:04:07.354 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:04:07.384 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 07:04:07.384 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 07:04:07.514 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:04:07.544 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 07:04:07.544 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 07:04:07.544 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 07:04:07.674 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 07:04:07.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:04:08.134 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:04:08.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:04:08.164 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-18 07:04:08.164 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:04:09.384 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-18 07:04:09.384 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start 17-03-18 07:04:09.384 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:04:09.404 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 07:04:09.404 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions. 17-03-18 07:04:09.404 -07 000000610 INF: ReagentValve: Xmit -02\r 17-03-18 07:04:09.554 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 07:04:09.574 -07 000000610 INF: ReagentValve: Recv 00E3\r 17-03-18 07:04:09.574 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%) 17-03-18 07:04:09.624 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:04:09.644 -07 000000610 INF: ReagentValve: Recv 02\r 17-03-18 07:04:09.644 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 07:04:09.644 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.008536, 17-03-18 07:04:09.744 -07 000000610 INF: =================== Cycle #157, Pumping Reagent USM (2) =================== 17-03-18 07:04:09.744 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-18 07:04:09.744 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:04:09.774 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-18 07:04:09.774 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-18 07:04:09.774 -07 000000610 INF: =================== Cycle #157, Pumping Reagent USM (2), Aspirating port InputPort =================== 17-03-18 07:04:09.904 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-18 07:04:09.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:04:11.384 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:04:11.414 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:04:11.834 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:04:11.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:04:11.864 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-18 07:04:11.864 -07 000000610 INF: =================== Cycle #157, Pumping Reagent USM (2) =================== 17-03-18 07:04:11.924 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:04:11.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:04:11.994 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:04:12.024 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 07:04:12.024 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 07:04:12.154 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:04:12.184 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 07:04:12.184 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 07:04:12.184 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 07:04:12.314 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 07:04:12.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:04:12.774 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:04:12.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:04:12.804 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 07:04:12.804 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:04:14.024 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-18 07:04:14.024 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-18 07:04:14.024 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:04:14.044 -07 000000610 INF: ReagentValve: Recv 02\r 17-03-18 07:04:14.044 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions. 17-03-18 07:04:14.044 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-18 07:04:14.194 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 07:04:14.214 -07 000000610 INF: ReagentValve: Recv 00E3\r 17-03-18 07:04:14.214 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%) 17-03-18 07:04:14.264 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:04:14.284 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 07:04:14.284 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-18 07:04:14.384 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:04:14.384 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-18 07:04:14.384 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:04:14.414 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-18 07:04:14.414 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-18 07:04:14.414 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-18 07:04:14.544 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-18 07:04:14.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:04:15.004 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.985358, 17-03-18 07:04:15.454 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:04:15.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:04:15.484 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete 17-03-18 07:04:15.484 -07 000000610 INF: =================== Cycle #157, Pumping Reagent PR2 (3) =================== 17-03-18 07:04:15.614 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:04:15.644 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 07:04:15.644 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-18 07:04:15.774 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-18 07:04:15.804 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 07:04:15.804 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-18 07:04:15.804 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-18 07:04:15.934 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-18 07:04:15.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:04:16.394 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-18 07:04:16.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:04:16.424 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-18 07:04:16.424 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:04:16.424 -07 000000625 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 07:04:16.424 -07 000000626 INF: WaitCommand(10000) start 17-03-18 07:04:16.424 -07 000000625 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-18 07:04:16.924 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:04:16.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:04:17.644 -07 000000625 INF: AsyncDelayTimer waited 1216ms 17-03-18 07:04:17.644 -07 000000625 INF: LanePump: Xmit /1?\r 17-03-18 07:04:17.674 -07 000000625 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-18 07:04:17.674 -07 000000625 INF: LanePump: Current Position of Pump is: 1110 17-03-18 07:04:17.804 -07 000000625 INF: LanePump: Xmit /1V1500OA0R\r 17-03-18 07:04:17.844 -07 000000625 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:04:19.374 -07 000000625 INF: LanePump: Xmit /1Q\r 17-03-18 07:04:19.404 -07 000000625 INF: LanePump: Recv /0@(0x03)\r\n 17-03-18 07:04:19.824 -07 000000625 INF: LanePump: Xmit /1Q\r 17-03-18 07:04:19.854 -07 000000625 INF: LanePump: Recv /0`(0x03)\r\n 17-03-18 07:04:19.854 -07 000000625 INF: LanePump: Waited 2009 ms for pump motion to complete 17-03-18 07:04:19.854 -07 000000625 INF: =================== Dispense to DispenseAndWait =================== 17-03-18 07:04:19.854 -07 000000625 INF: =================== =================== 17-03-18 07:04:20.364 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.978563, 17-03-18 07:04:21.924 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:04:21.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:04:25.724 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.016692, 17-03-18 07:04:26.434 -07 000000626 INF: WaitCommand(10000) end 17-03-18 07:04:26.434 -07 000000610 INF: =================== Cycle #157, Imaging =================== 17-03-18 07:04:26.434 -07 000000610 INF: Imaging Cycle 157: ScanTilesCommand Cycle 157 time start. 17-03-18 07:04:26.434 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand 17-03-18 07:04:26.434 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:04:26.464 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-18 07:04:26.464 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions. 17-03-18 07:04:26.464 -07 000000610 INF: ReagentValve: Xmit -18\r 17-03-18 07:04:26.764 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-18 07:04:26.784 -07 000000610 INF: ReagentValve: Recv 0278\r 17-03-18 07:04:26.784 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%) 17-03-18 07:04:26.834 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-18 07:04:26.854 -07 000000610 INF: ReagentValve: Recv 18\r 17-03-18 07:04:26.854 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:04:26.854 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:04:26.854 -07 000000437 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start. 17-03-18 07:04:26.854 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:04:26.854 -07 000000437 INF: FPGA: Xmit EXLED1ON\n [RedLED] 17-03-18 07:04:26.854 -07 000000591 INF: FPGA: Recv EXLED1ON 17-03-18 07:04:26.864 -07 000000437 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 07:04:26.864 -07 000000437 INF: FPGA: Xmit EXLED1ADCR\n [RedLED] 17-03-18 07:04:26.864 -07 000000591 INF: FPGA: Recv EXLED1ADCR 23235 17-03-18 07:04:26.874 -07 000000437 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:26.874 -07 000000437 INF: RedLED: Using Red data: Photodiode ADC 23235 --> 7.5 mW (old method), or 205.9 mW (new method). Difference = 198.4 mW 17-03-18 07:04:26.874 -07 000000437 INF: FPGA: Xmit EXLED1OFF\n [RedLED] 17-03-18 07:04:26.874 -07 000000430 INF: FPGA: Recv EXLED1OFF 17-03-18 07:04:26.884 -07 000000437 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:26.884 -07 000000437 INF: RedLED: LED was on for 20 ms 17-03-18 07:04:26.884 -07 000000437 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms. 17-03-18 07:04:26.884 -07 000000437 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start. 17-03-18 07:04:26.884 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:04:26.894 -07 000000437 INF: FPGA: Xmit EXLED2ON\n [GreenLED] 17-03-18 07:04:26.894 -07 000000625 INF: FPGA: Recv EXLED2ON 17-03-18 07:04:26.904 -07 000000437 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-18 07:04:26.904 -07 000000437 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED] 17-03-18 07:04:26.904 -07 000000625 INF: FPGA: Recv EXLED1ADCR 2095 17-03-18 07:04:26.914 -07 000000437 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:26.914 -07 000000437 INF: GreenLED: Using Green data: Photodiode ADC 2095 --> 0.9 mW (old method), or 182.1 mW (new method). Difference = 181.2 mW 17-03-18 07:04:26.924 -07 000000437 INF: FPGA: Xmit EXLED2OFF\n [GreenLED] 17-03-18 07:04:26.924 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:04:26.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:04:26.924 -07 000000625 INF: FPGA: Recv EXLED2OFF 17-03-18 07:04:26.934 -07 000000437 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:04:26.934 -07 000000437 INF: GreenLED: LED was on for 29 ms 17-03-18 07:04:26.934 -07 000000437 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 48 ms. 17-03-18 07:04:26.954 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator] 17-03-18 07:04:26.954 -07 000000625 INF: FPGA: Recv EMCUR 17-03-18 07:04:26.964 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-18 07:04:26.964 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator] 17-03-18 07:04:27.464 -07 000000625 INF: FPGA: Recv EMOUT 17-03-18 07:04:27.464 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall 17-03-18 07:04:27.464 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator] 17-03-18 07:04:27.464 -07 000000437 INF: FPGA: Recv EMCUR 17-03-18 07:04:27.474 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:04:27.474 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 07:04:27.474 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.126709018880046. ------ 17-03-18 07:04:27.474 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:04:27.474 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17843 mm 17-03-18 07:04:27.474 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:04:28.034 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-18 07:04:28.034 -07 000000561 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm 17-03-18 07:04:28.034 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:28.564 -07 000000581 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:04:28.564 -07 000000581 INF: FPGA: Recv YRDPOS 154379 17-03-18 07:04:28.564 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1080 ms to get response, and 1086 ms overall 17-03-18 07:04:28.564 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 520 ms to get response, and 526 ms overall 17-03-18 07:04:28.564 -07 000000561 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:28.564 -07 000000561 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False 17-03-18 07:04:28.564 -07 000000561 INF: Y Motor: Moving to 122701 encoder counts 17-03-18 07:04:28.564 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 07:04:28.564 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 38978, sync = True, waitForSettling = False) 17-03-18 07:04:28.564 -07 000000581 INF: Z Motor: Moving to -0.178430 mm, started at -0.126709 mm, distance = -51.72 um 17-03-18 07:04:28.574 -07 000000561 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-18 07:04:28.584 -07 000000581 INF: FPGA: Xmit ZDACW 38978\n [Z Motor] 17-03-18 07:04:29.104 -07 000000591 INF: FPGA: Recv ZDACW 17-03-18 07:04:29.104 -07 000000591 INF: FPGA: Recv FOCMRRFOC 17-03-18 07:04:29.104 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 530 ms to get response, and 539 ms overall 17-03-18 07:04:29.104 -07 000000581 INF: FPGA: 'ZDACW 38978' command took 0 ms to send, 510 ms to get response, and 538 ms overall 17-03-18 07:04:29.104 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:29.104 -07 000000591 INF: FPGA: Recv ZDACR 38978 17-03-18 07:04:29.114 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:04:29.114 -07 000000581 INF: Z Motor: MoveAbsStepped took 548 ms (did NOT wait for settling yet)) 17-03-18 07:04:30.254 -07 000000581 INF: FPGA: Recv YMVTO 122701 24778 17-03-18 07:04:30.254 -07 000000561 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1695 ms overall 17-03-18 07:04:30.254 -07 000000561 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm) 17-03-18 07:04:30.254 -07 000000561 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24778 steps (15.486 mm). Slippage = 0.019 mm (0.00%). 17-03-18 07:04:30.254 -07 000000561 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.468 mm, average velocity = 9.126 mm/sec 17-03-18 07:04:31.084 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.02213, 17-03-18 07:04:31.924 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:04:31.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:04:33.104 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:33.104 -07 000000569 INF: FPGA: Recv YRDPOS 122695 17-03-18 07:04:33.114 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:33.114 -07 000000561 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:33.144 -07 000000561 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:04:33.144 -07 000000561 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm) 17-03-18 07:04:33.144 -07 000000561 INF: Y Motor: Moved to 59.9097 after 5108 ms 17-03-18 07:04:33.144 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178430 mm (DAC = 38978) 17-03-18 07:04:33.144 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:33.144 -07 000000626 INF: FPGA: Recv ZSGSRD 37075 17-03-18 07:04:33.154 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:04:33.154 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:33.154 -07 000000430 INF: FPGA: Recv ZSGSRD 37060 17-03-18 07:04:33.164 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:33.164 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:33.164 -07 000000591 INF: FPGA: Recv ZSGSRD 37068 17-03-18 07:04:33.174 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:33.174 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:33.174 -07 000000512 INF: FPGA: Recv ZSGSRD 37065 17-03-18 07:04:33.184 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:33.184 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:33.184 -07 000000581 INF: FPGA: Recv ZSGSRD 37069 17-03-18 07:04:33.194 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:33.194 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:33.194 -07 000000561 INF: FPGA: Recv ZSGSRD 37066 17-03-18 07:04:33.204 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:33.204 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:33.204 -07 000000430 INF: FPGA: Recv ZSGSRD 37063 17-03-18 07:04:33.214 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:33.214 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:33.214 -07 000000437 INF: FPGA: Recv ZSGSRD 37069 17-03-18 07:04:33.224 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:33.224 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:33.224 -07 000000430 INF: FPGA: Recv ZSGSRD 37062 17-03-18 07:04:33.234 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:33.234 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:33.234 -07 000000569 INF: FPGA: Recv ZSGSRD 37066 17-03-18 07:04:33.244 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:33.244 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:33.244 -07 000000437 INF: FPGA: Recv ZPIEZORD 33308 17-03-18 07:04:33.254 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:33.254 -07 000000625 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.948 V. Piezo Error = -8.3 V. 17-03-18 07:04:33.254 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37066 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37066 (-177.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37060 (-177.5 uncal um), Max = 37075 (-177.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:04:33.254 -07 000000625 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37066, posNoise = 9, negNoise = 6 17-03-18 07:04:33.254 -07 000000625 INF: Z Motor: After move to -0.178430, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:33.254 -07 000000625 INF: Z Motor: Settle wait time = 4583 ms, measure time = 105 ms (allowed 150 ms), total time = 4688 ms 17-03-18 07:04:33.254 -07 000000625 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 07:04:33.304 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5825 ms 17-03-18 07:04:33.304 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:04:33.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:04:33.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:04:33.304 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:04:33.304 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:04:33.304 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 07:04:33.304 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:04:33.304 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-18 07:04:33.304 -07 000000581 INF: Camera: sBCa_SetPowerMode(785074288, 1) start. 17-03-18 07:04:33.334 -07 000000581 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms. 17-03-18 07:04:33.334 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 07:04:33.334 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms. 17-03-18 07:04:33.334 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 07:04:33.354 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 07:04:33.354 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms. 17-03-18 07:04:33.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 07:04:33.394 -07 000000625 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 07:04:33.694 -07 000000625 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 07:04:33.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 07:04:33.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 07:04:33.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 616942904, 0x0, 559484976) start. 17-03-18 07:04:33.734 -07 000000606 INF: FPGA: Recv @CAMSNAP 380 17-03-18 07:04:33.734 -07 000000430 INF: FPGA: Recv CAMSNAP 17-03-18 07:04:33.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall 17-03-18 07:04:33.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 616942904, 0x0, 559484976) end. Duration was 126 ms. 17-03-18 07:04:33.824 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:33.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 07:04:33.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-18 07:04:33.934 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:04:33.934 -07 000000569 INF: Image SNR check: start 17-03-18 07:04:33.934 -07 000000591 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:04:33.944 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:04:33.944 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 07:04:33.944 -07 000000569 INF: Image SNR check: pass [peak (Max-Min)=122.91] 17-03-18 07:04:33.944 -07 000000569 INF: Autofocus start 17-03-18 07:04:33.944 -07 000000569 INF: MeasureProfile start 17-03-18 07:04:33.954 -07 000000569 INF: MeasureProfile done 17-03-18 07:04:33.954 -07 000000569 INF: X=32 Z correction [um]=0.09220707 17-03-18 07:04:33.964 -07 000000569 INF: Autofocus finished 17-03-18 07:04:34.144 -07 000000430 INF: FPGA: Recv FOCMRRIMG 17-03-18 07:04:34.144 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 07:04:34.144 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.178443199257647. ---------- 17-03-18 07:04:34.144 -07 000000610 INF: Cycle 157 Tile 1 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:04:34.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37511, sync = True, waitForSettling = True) 17-03-18 07:04:34.154 -07 000000610 INF: Z Motor: Moving to -0.171714 mm, started at -0.178443 mm, distance = 6.73 um 17-03-18 07:04:34.154 -07 000000610 INF: FPGA: Xmit ZDACW 37511\n [Z Motor] 17-03-18 07:04:34.154 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 07:04:34.164 -07 000000610 INF: FPGA: 'ZDACW 37511' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:04:34.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:34.164 -07 000000581 INF: FPGA: Recv ZDACR 37511 17-03-18 07:04:34.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:34.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:04:34.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:34.324 -07 000000581 INF: FPGA: Recv ZSGSRD 36029 17-03-18 07:04:34.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:34.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:34.334 -07 000000569 INF: FPGA: Recv ZSGSRD 36018 17-03-18 07:04:34.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:34.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:34.344 -07 000000581 INF: FPGA: Recv ZSGSRD 36014 17-03-18 07:04:34.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:34.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:34.354 -07 000000569 INF: FPGA: Recv ZSGSRD 36023 17-03-18 07:04:34.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:34.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:34.364 -07 000000581 INF: FPGA: Recv ZSGSRD 36024 17-03-18 07:04:34.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:34.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:34.374 -07 000000569 INF: FPGA: Recv ZSGSRD 36014 17-03-18 07:04:34.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:34.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:34.384 -07 000000581 INF: FPGA: Recv ZSGSRD 36018 17-03-18 07:04:34.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:34.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:34.394 -07 000000569 INF: FPGA: Recv ZSGSRD 36026 17-03-18 07:04:34.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:34.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:34.404 -07 000000569 INF: FPGA: Recv ZSGSRD 36017 17-03-18 07:04:34.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:34.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:34.414 -07 000000569 INF: FPGA: Recv ZSGSRD 36019 17-03-18 07:04:34.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:34.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:34.424 -07 000000569 INF: FPGA: Recv ZPIEZORD 31898 17-03-18 07:04:34.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:34.434 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -9.1 V. 17-03-18 07:04:34.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36020 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36018 (-170.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36014 (-170.8 uncal um), Max = 36029 (-170.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:04:34.434 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36020, posNoise = 9, negNoise = 6 17-03-18 07:04:34.434 -07 000000610 INF: Z Motor: After move to -0.171714, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:34.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 07:04:34.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:04:34.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:04:34.434 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:04:34.434 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:04:34.434 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:04:34.434 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:04:34.434 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:04:34.434 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-18 07:04:34.434 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:04:34.434 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:04:34.434 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:04:34.434 -07 000000437 INF: Camera: sBCa_SetPowerMode(785074704, 1) start. 17-03-18 07:04:34.444 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:04:34.444 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:04:34.454 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 07:04:34.454 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 07:04:34.464 -07 000000437 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms. 17-03-18 07:04:34.464 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:04:34.464 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:04:34.464 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:04:34.474 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms. 17-03-18 07:04:34.474 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 41 ms. 17-03-18 07:04:34.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37688 150\n [Camera] 17-03-18 07:04:34.674 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:04:35.154 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:04:35.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:04:35.154 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:35.154 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:35.154 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 07:04:35.154 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:04:35.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:04:35.154 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:35.154 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:35.154 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-18 07:04:35.344 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37688 859 17-03-18 07:04:35.494 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:04:35.554 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms. 17-03-18 07:04:35.554 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 07:04:35.554 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:35.554 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms. 17-03-18 07:04:35.554 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 07:04:35.554 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:35.564 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-18 07:04:35.564 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms. 17-03-18 07:04:35.564 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 07:04:35.574 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-18 07:04:35.724 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240 17-03-18 07:04:35.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240 17-03-18 07:04:35.724 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:35.734 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240 17-03-18 07:04:35.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240 17-03-18 07:04:35.734 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:35.734 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:35.734 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-18 07:04:35.734 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:35.734 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-18 07:04:35.914 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1429 17-03-18 07:04:35.914 -07 000000625 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:04:35.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37688 150' command took 2 ms to send, 1425 ms to get response, and 1436 ms overall 17-03-18 07:04:35.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 07:04:35.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.171723473357365. ------ 17-03-18 07:04:35.924 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:04:35.924 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17793 mm 17-03-18 07:04:35.924 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:04:35.924 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True) 17-03-18 07:04:35.924 -07 000000625 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm 17-03-18 07:04:35.934 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:36.134 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 393 ms. 17-03-18 07:04:36.134 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 07:04:36.134 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:36.134 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms. 17-03-18 07:04:36.134 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 07:04:36.134 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:36.134 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 07:04:36.144 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 07:04:36.144 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms. 17-03-18 07:04:36.144 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-18 07:04:36.154 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38870, sync = True, waitForSettling = False) 17-03-18 07:04:36.154 -07 000000561 INF: Z Motor: Moving to -0.177935 mm, started at -0.171723 mm, distance = -6.21 um 17-03-18 07:04:36.154 -07 000000561 INF: FPGA: Xmit ZDACW 38870\n [Z Motor] 17-03-18 07:04:36.154 -07 000000581 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:04:36.154 -07 000000581 INF: FPGA: Recv YRDPOS 122695 17-03-18 07:04:36.154 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 226 ms to get response, and 235 ms overall 17-03-18 07:04:36.154 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 216 ms to get response, and 232 ms overall 17-03-18 07:04:36.154 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 07:04:36.154 -07 000000625 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:36.154 -07 000000625 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:04:36.154 -07 000000625 INF: Y Motor: Moving 1333 steps0 17-03-18 07:04:36.164 -07 000000561 INF: FPGA: 'ZDACW 38870' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:04:36.164 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:04:36.174 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 07:04:36.184 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:36.184 -07 000000581 INF: FPGA: Recv ZDACR 38870 17-03-18 07:04:36.194 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 07:04:36.194 -07 000000561 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet)) 17-03-18 07:04:36.374 -07 000000561 INF: FPGA: Recv FOCMRRFOC 17-03-18 07:04:36.374 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall 17-03-18 07:04:36.464 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.007176, 17-03-18 07:04:36.534 -07 000000561 INF: FPGA: Recv YMVTILE 17-03-18 07:04:36.534 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall 17-03-18 07:04:36.584 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:36.584 -07 000000512 INF: FPGA: Recv YRDPOS 124378 17-03-18 07:04:36.594 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:04:36.594 -07 000000625 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:36.594 -07 000000625 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm) 17-03-18 07:04:36.594 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.833 mm, average velocity = 2.186 mm/sec 17-03-18 07:04:36.924 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:04:36.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:04:37.544 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:37.544 -07 000000606 INF: FPGA: Recv YRDPOS 124379 17-03-18 07:04:37.554 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:37.554 -07 000000625 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:37.584 -07 000000625 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:04:37.584 -07 000000625 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 07:04:37.584 -07 000000625 INF: Y Motor: Moved to 60.7319 after 1661 ms (table move) 17-03-18 07:04:37.594 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177935 mm (DAC = 38870) 17-03-18 07:04:37.594 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:37.594 -07 000000581 INF: FPGA: Recv ZSGSRD 36996 17-03-18 07:04:37.604 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:37.604 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:37.604 -07 000000625 INF: FPGA: Recv ZSGSRD 36987 17-03-18 07:04:37.614 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:37.614 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:37.614 -07 000000561 INF: FPGA: Recv ZSGSRD 36976 17-03-18 07:04:37.624 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:37.624 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:37.624 -07 000000581 INF: FPGA: Recv ZSGSRD 36989 17-03-18 07:04:37.634 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:37.634 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:37.634 -07 000000512 INF: FPGA: Recv ZSGSRD 36991 17-03-18 07:04:37.644 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:37.644 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:37.644 -07 000000430 INF: FPGA: Recv ZSGSRD 36990 17-03-18 07:04:37.654 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:37.674 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:37.674 -07 000000561 INF: FPGA: Recv ZSGSRD 36993 17-03-18 07:04:37.684 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 07:04:37.684 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:37.684 -07 000000606 INF: FPGA: Recv ZSGSRD 36989 17-03-18 07:04:37.694 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:37.714 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:37.714 -07 000000581 INF: FPGA: Recv ZSGSRD 36989 17-03-18 07:04:37.724 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 07:04:37.724 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:37.724 -07 000000512 INF: FPGA: Recv ZSGSRD 36982 17-03-18 07:04:37.734 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:37.744 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:37.744 -07 000000606 INF: FPGA: Recv ZPIEZORD 33216 17-03-18 07:04:37.754 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:04:37.754 -07 000000626 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.4 V. 17-03-18 07:04:37.754 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36988 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36989 (-177.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36976 (-177.0 uncal um), Max = 36996 (-177.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um) 17-03-18 07:04:37.754 -07 000000626 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36988, posNoise = 8, negNoise = 12 17-03-18 07:04:37.754 -07 000000626 INF: Z Motor: After move to -0.177935, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:37.754 -07 000000626 INF: Z Motor: Settle wait time = 1438 ms, measure time = 161 ms (allowed 150 ms), total time = 1599 ms 17-03-18 07:04:37.754 -07 000000626 INF: Z Motor: Warning: Actual position measuring time = 161 ms, longer than max expected time of 150 ms 17-03-18 07:04:37.754 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1829 ms 17-03-18 07:04:37.754 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:04:37.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:04:37.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:04:37.754 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:04:37.754 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:04:37.754 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 07:04:37.754 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:04:37.764 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:04:37.764 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 07:04:37.764 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 07:04:37.764 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 07:04:37.774 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 07:04:37.774 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-18 07:04:37.774 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 07:04:37.824 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 43 17-03-18 07:04:38.124 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 07:04:38.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 07:04:38.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 07:04:38.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-18 07:04:38.164 -07 000000606 INF: FPGA: Recv @CAMSNAP 380 17-03-18 07:04:38.164 -07 000000430 INF: FPGA: Recv CAMSNAP 17-03-18 07:04:38.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 385 ms overall 17-03-18 07:04:38.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms. 17-03-18 07:04:38.254 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:38.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 07:04:38.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms. 17-03-18 07:04:38.364 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:04:38.364 -07 000000561 INF: Autofocus start 17-03-18 07:04:38.364 -07 000000561 INF: MeasureProfile start 17-03-18 07:04:38.364 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:04:38.374 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:04:38.374 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 07:04:38.374 -07 000000561 INF: MeasureProfile done 17-03-18 07:04:38.374 -07 000000561 INF: X=32 Z correction [um]=0.09220707 17-03-18 07:04:38.374 -07 000000561 INF: Autofocus finished 17-03-18 07:04:38.574 -07 000000512 INF: FPGA: Recv FOCMRRIMG 17-03-18 07:04:38.574 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall 17-03-18 07:04:38.574 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.177942110710589. ---------- 17-03-18 07:04:38.574 -07 000000610 INF: Cycle 157 Tile 2 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:04:38.584 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37403, sync = True, waitForSettling = True) 17-03-18 07:04:38.584 -07 000000610 INF: Z Motor: Moving to -0.171220 mm, started at -0.177942 mm, distance = 6.72 um 17-03-18 07:04:38.584 -07 000000610 INF: FPGA: Xmit ZDACW 37403\n [Z Motor] 17-03-18 07:04:38.584 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 07:04:38.594 -07 000000610 INF: FPGA: 'ZDACW 37403' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:04:38.594 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:38.594 -07 000000591 INF: FPGA: Recv ZDACR 37403 17-03-18 07:04:38.604 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:38.604 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:04:38.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:38.754 -07 000000569 INF: FPGA: Recv ZSGSRD 35938 17-03-18 07:04:38.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:38.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:38.764 -07 000000626 INF: FPGA: Recv ZSGSRD 35949 17-03-18 07:04:38.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:38.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:38.774 -07 000000569 INF: FPGA: Recv ZSGSRD 35941 17-03-18 07:04:38.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:38.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:38.784 -07 000000626 INF: FPGA: Recv ZSGSRD 35941 17-03-18 07:04:38.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:38.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:38.794 -07 000000569 INF: FPGA: Recv ZSGSRD 35941 17-03-18 07:04:38.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:38.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:38.804 -07 000000626 INF: FPGA: Recv ZSGSRD 35944 17-03-18 07:04:38.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:38.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:38.814 -07 000000581 INF: FPGA: Recv ZSGSRD 35945 17-03-18 07:04:38.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:38.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:38.824 -07 000000569 INF: FPGA: Recv ZSGSRD 35938 17-03-18 07:04:38.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:38.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:38.834 -07 000000430 INF: FPGA: Recv ZSGSRD 35946 17-03-18 07:04:38.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:38.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:38.844 -07 000000581 INF: FPGA: Recv ZSGSRD 35945 17-03-18 07:04:38.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:38.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:38.854 -07 000000430 INF: FPGA: Recv ZPIEZORD 31801 17-03-18 07:04:38.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:38.864 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -9.1 V. 17-03-18 07:04:38.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35943 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35942 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35938 (-170.3 uncal um), Max = 35949 (-170.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 07:04:38.864 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35943, posNoise = 6, negNoise = 5 17-03-18 07:04:38.864 -07 000000610 INF: Z Motor: After move to -0.171220, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:38.864 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 07:04:38.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:04:38.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:04:38.864 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:04:38.864 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:04:38.864 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:04:38.864 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:04:38.864 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:04:38.864 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:04:38.864 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:04:38.864 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:04:38.864 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:04:38.864 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:04:38.874 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 07:04:38.874 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:04:38.874 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:04:38.874 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:04:38.884 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 07:04:38.884 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 07:04:38.884 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 07:04:38.884 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:04:38.884 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37579 150\n [Camera] 17-03-18 07:04:39.084 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:04:39.564 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:04:39.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:04:39.564 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:39.564 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:04:39.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:04:39.564 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:39.684 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:39.684 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 07:04:39.684 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:39.684 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:04:39.754 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37579 859 17-03-18 07:04:39.904 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:04:40.064 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 383 ms. 17-03-18 07:04:40.064 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms. 17-03-18 07:04:40.064 -07 000000437 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:40.074 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms. 17-03-18 07:04:40.074 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-18 07:04:40.074 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:40.074 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:40.074 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:40.074 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms. 17-03-18 07:04:40.074 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms. 17-03-18 07:04:40.134 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:04:40.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:04:40.134 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:40.134 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:04:40.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:04:40.134 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:40.144 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:40.144 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start. 17-03-18 07:04:40.144 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:40.144 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-18 07:04:40.324 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1431 17-03-18 07:04:40.324 -07 000000591 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:04:40.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37579 150' command took 2 ms to send, 1427 ms to get response, and 1438 ms overall 17-03-18 07:04:40.324 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.171993 17-03-18 07:04:40.334 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17199 mm 17-03-18 07:04:40.334 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:04:40.334 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True) 17-03-18 07:04:40.334 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm 17-03-18 07:04:40.334 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:40.334 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37572, sync = True, waitForSettling = False) 17-03-18 07:04:40.334 -07 000000626 INF: Z Motor: Moving to -0.171994 mm, started at -0.171229 mm, distance = -0.76 um 17-03-18 07:04:40.334 -07 000000591 INF: FPGA: Recv YRDPOS 124379 17-03-18 07:04:40.344 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:04:40.344 -07 000000512 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:40.344 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:04:40.344 -07 000000512 INF: Y Motor: Moving 1345 steps-23 17-03-18 07:04:40.344 -07 000000626 INF: FPGA: Xmit ZDACW 37572\n [Z Motor] 17-03-18 07:04:40.344 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 07:04:40.354 -07 000000626 INF: FPGA: 'ZDACW 37572' command took 2 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 07:04:40.354 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:40.354 -07 000000606 INF: FPGA: Recv ZDACR 37572 17-03-18 07:04:40.364 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:40.364 -07 000000626 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet)) 17-03-18 07:04:40.364 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:04:40.544 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 399 ms. 17-03-18 07:04:40.544 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 07:04:40.544 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:40.544 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 397 ms. 17-03-18 07:04:40.544 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 07:04:40.544 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:40.544 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:40.544 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-18 07:04:40.544 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:40.554 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms. 17-03-18 07:04:40.734 -07 000000608 INF: FPGA: Recv YMVTILE 17-03-18 07:04:40.734 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall 17-03-18 07:04:40.794 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:40.794 -07 000000606 INF: FPGA: Recv YRDPOS 126080 17-03-18 07:04:40.804 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:40.804 -07 000000512 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:40.804 -07 000000512 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm) 17-03-18 07:04:40.804 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.128 mm/sec 17-03-18 07:04:41.754 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:41.754 -07 000000626 INF: FPGA: Recv YRDPOS 126080 17-03-18 07:04:41.764 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:41.764 -07 000000512 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:41.794 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:04:41.794 -07 000000512 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:04:41.794 -07 000000512 INF: Y Motor: Moved to 61.5625 after 1460 ms (table move) 17-03-18 07:04:41.794 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171994 mm (DAC = 37572) 17-03-18 07:04:41.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:41.794 -07 000000512 INF: FPGA: Recv ZSGSRD 36063 17-03-18 07:04:41.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:04:41.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:41.804 -07 000000608 INF: FPGA: Recv ZSGSRD 36063 17-03-18 07:04:41.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:41.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:41.824 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.026244, 17-03-18 07:04:41.824 -07 000000512 INF: FPGA: Recv ZSGSRD 36067 17-03-18 07:04:41.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:04:41.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:41.834 -07 000000626 INF: FPGA: Recv ZSGSRD 36062 17-03-18 07:04:41.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:41.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:41.854 -07 000000608 INF: FPGA: Recv ZSGSRD 36054 17-03-18 07:04:41.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:04:41.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:41.864 -07 000000512 INF: FPGA: Recv ZSGSRD 36066 17-03-18 07:04:41.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:41.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:41.884 -07 000000626 INF: FPGA: Recv ZSGSRD 36067 17-03-18 07:04:41.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:04:41.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:41.894 -07 000000512 INF: FPGA: Recv ZSGSRD 36061 17-03-18 07:04:41.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:41.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:41.914 -07 000000512 INF: FPGA: Recv ZSGSRD 36066 17-03-18 07:04:41.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:04:41.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:41.924 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:04:41.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:04:41.924 -07 000000561 INF: FPGA: Recv ZSGSRD 36060 17-03-18 07:04:41.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:41.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:41.944 -07 000000512 INF: FPGA: Recv ZPIEZORD 32002 17-03-18 07:04:41.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:04:41.954 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -9.0 V. 17-03-18 07:04:41.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36063 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36063 (-171.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36054 (-171.1 uncal um), Max = 36067 (-171.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-18 07:04:41.954 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36063, posNoise = 4, negNoise = 9 17-03-18 07:04:41.954 -07 000000610 INF: Z Motor: After move to -0.171994, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:41.954 -07 000000610 INF: Z Motor: Settle wait time = 1463 ms, measure time = 154 ms (allowed 150 ms), total time = 1617 ms 17-03-18 07:04:41.954 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 154 ms, longer than max expected time of 150 ms 17-03-18 07:04:41.954 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms 17-03-18 07:04:41.954 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:04:41.954 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.17199971447946. ---------- 17-03-18 07:04:41.954 -07 000000610 INF: Cycle 157 Tile 3 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:04:41.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37395, sync = True, waitForSettling = True) 17-03-18 07:04:41.954 -07 000000610 INF: Z Motor: Moving to -0.171183 mm, started at -0.172000 mm, distance = 0.82 um 17-03-18 07:04:41.954 -07 000000610 INF: FPGA: Xmit ZDACW 37395\n [Z Motor] 17-03-18 07:04:41.954 -07 000000626 INF: FPGA: Recv ZDACW 17-03-18 07:04:41.964 -07 000000610 INF: FPGA: 'ZDACW 37395' command took 1 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:04:41.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:41.964 -07 000000512 INF: FPGA: Recv ZDACR 37395 17-03-18 07:04:41.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:41.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:04:42.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:42.124 -07 000000569 INF: FPGA: Recv ZSGSRD 35935 17-03-18 07:04:42.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:42.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:42.134 -07 000000608 INF: FPGA: Recv ZSGSRD 35938 17-03-18 07:04:42.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:42.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:42.144 -07 000000569 INF: FPGA: Recv ZSGSRD 35927 17-03-18 07:04:42.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:42.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:42.154 -07 000000608 INF: FPGA: Recv ZSGSRD 35929 17-03-18 07:04:42.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:42.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:42.164 -07 000000606 INF: FPGA: Recv ZSGSRD 35942 17-03-18 07:04:42.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:42.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:42.174 -07 000000512 INF: FPGA: Recv ZSGSRD 35927 17-03-18 07:04:42.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:42.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:42.184 -07 000000608 INF: FPGA: Recv ZSGSRD 35933 17-03-18 07:04:42.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:42.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:42.194 -07 000000569 INF: FPGA: Recv ZSGSRD 35943 17-03-18 07:04:42.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:42.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:42.204 -07 000000561 INF: FPGA: Recv ZSGSRD 35938 17-03-18 07:04:42.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:42.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:42.214 -07 000000606 INF: FPGA: Recv ZSGSRD 35941 17-03-18 07:04:42.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:42.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:42.224 -07 000000608 INF: FPGA: Recv ZPIEZORD 31828 17-03-18 07:04:42.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:42.234 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -9.1 V. 17-03-18 07:04:42.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35935 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35936 (-170.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35927 (-170.2 uncal um), Max = 35943 (-170.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 07:04:42.234 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35935, posNoise = 8, negNoise = 8 17-03-18 07:04:42.234 -07 000000610 INF: Z Motor: After move to -0.171183, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:42.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms) 17-03-18 07:04:42.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:04:42.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:04:42.234 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:04:42.234 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:04:42.234 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:04:42.234 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:04:42.234 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:04:42.234 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:04:42.234 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:04:42.234 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:04:42.234 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-18 07:04:42.234 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:04:42.244 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:04:42.244 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:04:42.244 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms. 17-03-18 07:04:42.244 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:04:42.254 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 07:04:42.254 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 07:04:42.254 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 07:04:42.254 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 07:04:42.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37572 150\n [Camera] 17-03-18 07:04:42.454 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:04:42.924 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 667 17-03-18 07:04:42.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 667 17-03-18 07:04:42.934 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:42.934 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:42.934 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-18 07:04:42.934 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 667 17-03-18 07:04:42.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 667 17-03-18 07:04:42.934 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:42.934 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:42.934 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start. 17-03-18 07:04:43.124 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37572 859 17-03-18 07:04:43.274 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:04:43.304 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 373 ms. 17-03-18 07:04:43.304 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms. 17-03-18 07:04:43.304 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:43.314 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms. 17-03-18 07:04:43.314 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms. 17-03-18 07:04:43.314 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:43.314 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:43.314 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:04:43.314 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 07:04:43.314 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-18 07:04:43.494 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:04:43.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:04:43.504 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:43.504 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:43.504 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 07:04:43.504 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:04:43.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:04:43.504 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:43.504 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:43.504 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 07:04:43.694 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1429 17-03-18 07:04:43.694 -07 000000608 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:04:43.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37572 150' command took 2 ms to send, 1431 ms to get response, and 1436 ms overall 17-03-18 07:04:43.694 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171446 17-03-18 07:04:43.694 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17145 mm 17-03-18 07:04:43.694 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:04:43.694 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True) 17-03-18 07:04:43.694 -07 000000569 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm 17-03-18 07:04:43.694 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37452, sync = True, waitForSettling = False) 17-03-18 07:04:43.694 -07 000000430 INF: Z Motor: Moving to -0.171444 mm, started at -0.171177 mm, distance = -0.27 um 17-03-18 07:04:43.694 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:43.694 -07 000000581 INF: FPGA: Recv YRDPOS 126080 17-03-18 07:04:43.704 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:04:43.704 -07 000000569 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:43.704 -07 000000430 INF: FPGA: Xmit ZDACW 37452\n [Z Motor] 17-03-18 07:04:43.704 -07 000000569 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:04:43.704 -07 000000569 INF: Y Motor: Moving 1344 steps-21 17-03-18 07:04:43.704 -07 000000591 INF: FPGA: Recv ZDACW 17-03-18 07:04:43.714 -07 000000430 INF: FPGA: 'ZDACW 37452' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 07:04:43.714 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:43.714 -07 000000606 INF: FPGA: Recv ZDACR 37452 17-03-18 07:04:43.724 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:04:43.724 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:43.724 -07 000000430 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet)) 17-03-18 07:04:43.884 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms. 17-03-18 07:04:43.884 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms. 17-03-18 07:04:43.884 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:43.884 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms. 17-03-18 07:04:43.884 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 07:04:43.884 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:43.894 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:04:43.894 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:04:43.894 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-18 07:04:43.894 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 07:04:44.094 -07 000000606 INF: FPGA: Recv YMVTILE 17-03-18 07:04:44.094 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:04:44.154 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:44.154 -07 000000581 INF: FPGA: Recv YRDPOS 127783 17-03-18 07:04:44.164 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:04:44.164 -07 000000569 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:44.164 -07 000000569 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-18 07:04:44.164 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec 17-03-18 07:04:45.114 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:45.114 -07 000000561 INF: FPGA: Recv YRDPOS 127784 17-03-18 07:04:45.124 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:45.124 -07 000000569 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:45.154 -07 000000569 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:04:45.154 -07 000000569 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 07:04:45.154 -07 000000569 INF: Y Motor: Moved to 62.3945 after 1456 ms (table move) 17-03-18 07:04:45.154 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171444 mm (DAC = 37452) 17-03-18 07:04:45.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.154 -07 000000581 INF: FPGA: Recv ZSGSRD 35975 17-03-18 07:04:45.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:04:45.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.164 -07 000000606 INF: FPGA: Recv ZSGSRD 35976 17-03-18 07:04:45.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.174 -07 000000606 INF: FPGA: Recv ZSGSRD 35979 17-03-18 07:04:45.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.184 -07 000000606 INF: FPGA: Recv ZSGSRD 35978 17-03-18 07:04:45.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.194 -07 000000606 INF: FPGA: Recv ZSGSRD 35977 17-03-18 07:04:45.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.204 -07 000000606 INF: FPGA: Recv ZSGSRD 35975 17-03-18 07:04:45.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.214 -07 000000606 INF: FPGA: Recv ZSGSRD 35985 17-03-18 07:04:45.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.224 -07 000000561 INF: FPGA: Recv ZSGSRD 35978 17-03-18 07:04:45.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.234 -07 000000606 INF: FPGA: Recv ZSGSRD 35985 17-03-18 07:04:45.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.244 -07 000000569 INF: FPGA: Recv ZSGSRD 35982 17-03-18 07:04:45.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:45.254 -07 000000569 INF: FPGA: Recv ZPIEZORD 31893 17-03-18 07:04:45.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.264 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.715 V. Piezo Error = -9.0 V. 17-03-18 07:04:45.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35979 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35978 (-170.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35975 (-170.6 uncal um), Max = 35985 (-170.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 07:04:45.264 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35979, posNoise = 6, negNoise = 4 17-03-18 07:04:45.264 -07 000000610 INF: Z Motor: After move to -0.171444, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:45.264 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 107 ms (allowed 150 ms), total time = 1565 ms 17-03-18 07:04:45.264 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-18 07:04:45.314 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms 17-03-18 07:04:45.314 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:04:45.314 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.171460080659552. ---------- 17-03-18 07:04:45.314 -07 000000610 INF: Cycle 157 Tile 4 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:04:45.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37276, sync = True, waitForSettling = True) 17-03-18 07:04:45.314 -07 000000610 INF: Z Motor: Moving to -0.170639 mm, started at -0.171460 mm, distance = 0.82 um 17-03-18 07:04:45.314 -07 000000610 INF: FPGA: Xmit ZDACW 37276\n [Z Motor] 17-03-18 07:04:45.314 -07 000000561 INF: FPGA: Recv ZDACW 17-03-18 07:04:45.324 -07 000000610 INF: FPGA: 'ZDACW 37276' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:04:45.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:45.324 -07 000000625 INF: FPGA: Recv ZDACR 37276 17-03-18 07:04:45.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:04:45.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.484 -07 000000569 INF: FPGA: Recv ZSGSRD 35853 17-03-18 07:04:45.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:45.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.494 -07 000000569 INF: FPGA: Recv ZSGSRD 35853 17-03-18 07:04:45.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.504 -07 000000591 INF: FPGA: Recv ZSGSRD 35851 17-03-18 07:04:45.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.514 -07 000000581 INF: FPGA: Recv ZSGSRD 35850 17-03-18 07:04:45.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.524 -07 000000625 INF: FPGA: Recv ZSGSRD 35856 17-03-18 07:04:45.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.534 -07 000000625 INF: FPGA: Recv ZSGSRD 35854 17-03-18 07:04:45.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.544 -07 000000591 INF: FPGA: Recv ZSGSRD 35856 17-03-18 07:04:45.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.554 -07 000000581 INF: FPGA: Recv ZSGSRD 35853 17-03-18 07:04:45.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.564 -07 000000625 INF: FPGA: Recv ZSGSRD 35852 17-03-18 07:04:45.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:45.574 -07 000000625 INF: FPGA: Recv ZSGSRD 35850 17-03-18 07:04:45.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:45.584 -07 000000625 INF: FPGA: Recv ZPIEZORD 31694 17-03-18 07:04:45.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:45.594 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.688 V. Piezo Error = -9.2 V. 17-03-18 07:04:45.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35853 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35853 (-169.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35850 (-169.8 uncal um), Max = 35856 (-169.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-18 07:04:45.594 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35853, posNoise = 3, negNoise = 3 17-03-18 07:04:45.594 -07 000000610 INF: Z Motor: After move to -0.170639, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:45.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 07:04:45.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:04:45.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:04:45.594 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:04:45.594 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:04:45.594 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:04:45.594 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:04:45.594 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:04:45.594 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:04:45.594 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:04:45.594 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:04:45.594 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:04:45.594 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:04:45.604 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:04:45.604 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:04:45.604 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:04:45.604 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:04:45.614 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms. 17-03-18 07:04:45.614 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 07:04:45.614 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms. 17-03-18 07:04:45.614 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 07:04:45.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37452 150\n [Camera] 17-03-18 07:04:45.814 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:04:46.284 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:04:46.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:04:46.294 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:46.294 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:46.294 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-18 07:04:46.294 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:04:46.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:04:46.294 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:46.294 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:46.294 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-18 07:04:46.484 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37452 859 17-03-18 07:04:46.634 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:04:46.664 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 378 ms. 17-03-18 07:04:46.664 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms. 17-03-18 07:04:46.664 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:46.664 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms. 17-03-18 07:04:46.664 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms. 17-03-18 07:04:46.664 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:46.674 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:04:46.674 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 07:04:46.674 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:04:46.684 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-18 07:04:46.864 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:04:46.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:04:46.864 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:46.864 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:46.864 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start. 17-03-18 07:04:46.864 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:04:46.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:04:46.864 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:46.864 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:46.864 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start. 17-03-18 07:04:46.924 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:04:46.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:04:47.054 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:04:47.054 -07 000000625 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:04:47.054 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37452 150' command took 2 ms to send, 1432 ms to get response, and 1437 ms overall 17-03-18 07:04:47.054 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171124 17-03-18 07:04:47.054 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17112 mm 17-03-18 07:04:47.054 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:04:47.054 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True) 17-03-18 07:04:47.054 -07 000000581 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm 17-03-18 07:04:47.054 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 37382, sync = True, waitForSettling = False) 17-03-18 07:04:47.054 -07 000000625 INF: Z Motor: Moving to -0.171124 mm, started at -0.170651 mm, distance = -0.47 um 17-03-18 07:04:47.054 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:47.064 -07 000000608 INF: FPGA: Recv YRDPOS 127784 17-03-18 07:04:47.074 -07 000000625 INF: FPGA: Xmit ZDACW 37382\n [Z Motor] 17-03-18 07:04:47.074 -07 000000581 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 07:04:47.074 -07 000000581 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:47.074 -07 000000581 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:04:47.074 -07 000000581 INF: Y Motor: Moving 1341 steps-18 17-03-18 07:04:47.074 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 07:04:47.084 -07 000000625 INF: FPGA: 'ZDACW 37382' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-18 07:04:47.084 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:47.084 -07 000000430 INF: FPGA: Recv ZDACR 37382 17-03-18 07:04:47.094 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:47.094 -07 000000625 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet)) 17-03-18 07:04:47.094 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:04:47.244 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 377 ms. 17-03-18 07:04:47.244 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms. 17-03-18 07:04:47.244 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:47.244 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 382 ms. 17-03-18 07:04:47.244 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms. 17-03-18 07:04:47.244 -07 000000591 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:47.244 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:04:47.244 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:04:47.244 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-18 07:04:47.254 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-18 07:04:47.264 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.011254, 17-03-18 07:04:47.464 -07 000000591 INF: FPGA: Recv YMVTILE 17-03-18 07:04:47.464 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall 17-03-18 07:04:47.524 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:47.524 -07 000000437 INF: FPGA: Recv YRDPOS 129479 17-03-18 07:04:47.534 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:04:47.534 -07 000000581 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:47.534 -07 000000581 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm) 17-03-18 07:04:47.534 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec 17-03-18 07:04:48.484 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:48.484 -07 000000512 INF: FPGA: Recv YRDPOS 129479 17-03-18 07:04:48.494 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:48.494 -07 000000581 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:48.524 -07 000000581 INF: Y Motor: After move to 63.232609, error = -0.010441, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:04:48.524 -07 000000581 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:04:48.524 -07 000000581 INF: Y Motor: Moved to 63.2222 after 1467 ms (table move) 17-03-18 07:04:48.524 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171124 mm (DAC = 37382) 17-03-18 07:04:48.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.524 -07 000000581 INF: FPGA: Recv ZSGSRD 35925 17-03-18 07:04:48.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:04:48.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.534 -07 000000512 INF: FPGA: Recv ZSGSRD 35932 17-03-18 07:04:48.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.544 -07 000000430 INF: FPGA: Recv ZSGSRD 35929 17-03-18 07:04:48.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.554 -07 000000512 INF: FPGA: Recv ZSGSRD 35930 17-03-18 07:04:48.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.564 -07 000000512 INF: FPGA: Recv ZSGSRD 35930 17-03-18 07:04:48.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.574 -07 000000430 INF: FPGA: Recv ZSGSRD 35928 17-03-18 07:04:48.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.584 -07 000000512 INF: FPGA: Recv ZSGSRD 35925 17-03-18 07:04:48.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.594 -07 000000625 INF: FPGA: Recv ZSGSRD 35927 17-03-18 07:04:48.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.604 -07 000000512 INF: FPGA: Recv ZSGSRD 35931 17-03-18 07:04:48.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.614 -07 000000625 INF: FPGA: Recv ZSGSRD 35933 17-03-18 07:04:48.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:48.624 -07 000000512 INF: FPGA: Recv ZPIEZORD 31821 17-03-18 07:04:48.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.634 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -9.1 V. 17-03-18 07:04:48.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35929 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35930 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35925 (-170.2 uncal um), Max = 35933 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 07:04:48.634 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35929, posNoise = 4, negNoise = 4 17-03-18 07:04:48.634 -07 000000610 INF: Z Motor: After move to -0.171124, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:48.634 -07 000000610 INF: Z Motor: Settle wait time = 1469 ms, measure time = 104 ms (allowed 150 ms), total time = 1573 ms 17-03-18 07:04:48.634 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-18 07:04:48.684 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms 17-03-18 07:04:48.684 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:04:48.684 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22216796875, Z-position -0.171138870052464. ---------- 17-03-18 07:04:48.684 -07 000000610 INF: Cycle 157 Tile 5 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:04:48.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37205, sync = True, waitForSettling = True) 17-03-18 07:04:48.684 -07 000000610 INF: Z Motor: Moving to -0.170314 mm, started at -0.171139 mm, distance = 0.83 um 17-03-18 07:04:48.684 -07 000000610 INF: FPGA: Xmit ZDACW 37205\n [Z Motor] 17-03-18 07:04:48.684 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 07:04:48.694 -07 000000610 INF: FPGA: 'ZDACW 37205' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:04:48.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:48.694 -07 000000608 INF: FPGA: Recv ZDACR 37205 17-03-18 07:04:48.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:04:48.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.854 -07 000000569 INF: FPGA: Recv ZSGSRD 35802 17-03-18 07:04:48.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:48.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.864 -07 000000608 INF: FPGA: Recv ZSGSRD 35802 17-03-18 07:04:48.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.874 -07 000000608 INF: FPGA: Recv ZSGSRD 35798 17-03-18 07:04:48.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.884 -07 000000608 INF: FPGA: Recv ZSGSRD 35796 17-03-18 07:04:48.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.894 -07 000000437 INF: FPGA: Recv ZSGSRD 35809 17-03-18 07:04:48.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.904 -07 000000608 INF: FPGA: Recv ZSGSRD 35803 17-03-18 07:04:48.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.914 -07 000000608 INF: FPGA: Recv ZSGSRD 35803 17-03-18 07:04:48.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.924 -07 000000437 INF: FPGA: Recv ZSGSRD 35799 17-03-18 07:04:48.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.934 -07 000000608 INF: FPGA: Recv ZSGSRD 35802 17-03-18 07:04:48.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:48.944 -07 000000608 INF: FPGA: Recv ZSGSRD 35806 17-03-18 07:04:48.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:48.954 -07 000000437 INF: FPGA: Recv ZPIEZORD 31649 17-03-18 07:04:48.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:48.964 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -9.2 V. 17-03-18 07:04:48.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35802 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35802 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35796 (-169.4 uncal um), Max = 35809 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:04:48.964 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35802, posNoise = 7, negNoise = 6 17-03-18 07:04:48.964 -07 000000610 INF: Z Motor: After move to -0.170314, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:48.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms) 17-03-18 07:04:48.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:04:48.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:04:48.964 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:04:48.964 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:04:48.964 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:04:48.964 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:04:48.964 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:04:48.964 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:04:48.964 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:04:48.964 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:04:48.964 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:04:48.964 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:04:48.974 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 07:04:48.974 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:04:48.974 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 07:04:48.974 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:04:48.984 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 07:04:48.984 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 07:04:48.984 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 07:04:48.984 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 07:04:48.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37382 150\n [Camera] 17-03-18 07:04:49.184 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:04:49.664 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:04:49.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:04:49.664 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:49.664 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:49.664 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start. 17-03-18 07:04:49.664 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:04:49.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:04:49.664 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:49.664 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:49.664 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start. 17-03-18 07:04:49.854 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37382 859 17-03-18 07:04:50.004 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:04:50.044 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 384 ms. 17-03-18 07:04:50.044 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-18 07:04:50.044 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:50.054 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:04:50.054 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 07:04:50.064 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 398 ms. 17-03-18 07:04:50.064 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-18 07:04:50.064 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:50.074 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:04:50.074 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-18 07:04:50.234 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:04:50.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:04:50.234 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:50.234 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:50.234 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start. 17-03-18 07:04:50.234 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:04:50.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:04:50.234 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:50.374 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:50.374 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:04:50.424 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:04:50.424 -07 000000512 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:04:50.424 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37382 150' command took 2 ms to send, 1428 ms to get response, and 1439 ms overall 17-03-18 07:04:50.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 07:04:50.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22216796875, Z-Position -0.170322995110461. ------ 17-03-18 07:04:50.434 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:04:50.624 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 392 ms. 17-03-18 07:04:50.624 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-18 07:04:50.624 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:50.634 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:50.634 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 07:04:50.644 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17659 mm 17-03-18 07:04:50.644 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:04:50.744 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 376 ms. 17-03-18 07:04:50.744 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms. 17-03-18 07:04:50.744 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:50.754 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:50.754 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms. 17-03-18 07:04:50.764 -07 000000608 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:04:50.764 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 327 ms to get response, and 333 ms overall 17-03-18 07:04:50.764 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 07:04:50.774 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True) 17-03-18 07:04:50.774 -07 000000608 INF: Y Motor: Moving to 64.0626 mm, started at 63.2222 mm, delta = 0.8404 mm 17-03-18 07:04:50.774 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:51.314 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38577, sync = True, waitForSettling = False) 17-03-18 07:04:51.314 -07 000000561 INF: Z Motor: Moving to -0.176594 mm, started at -0.170323 mm, distance = -6.27 um 17-03-18 07:04:51.314 -07 000000561 INF: FPGA: Xmit ZDACW 38577\n [Z Motor] 17-03-18 07:04:52.314 -07 000000591 INF: FPGA: Recv YRDPOS 129479 17-03-18 07:04:52.314 -07 000000591 INF: FPGA: Recv FOCMRRFOC 17-03-18 07:04:52.314 -07 000000591 INF: FPGA: Recv ZDACW 17-03-18 07:04:52.314 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:04:52.314 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1540 ms to get response, and 1542 ms overall 17-03-18 07:04:52.314 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1530 ms to get response, and 1539 ms overall 17-03-18 07:04:52.314 -07 000000608 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:52.314 -07 000000608 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:04:52.314 -07 000000608 INF: Y Motor: Moving 1345 steps-21 17-03-18 07:04:52.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:04:52.314 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:04:52.314 -07 000000561 INF: FPGA: 'ZDACW 38577' command took 0 ms to send, 990 ms to get response, and 999 ms overall 17-03-18 07:04:52.324 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:52.324 -07 000000512 INF: FPGA: Recv ZDACR 38577 17-03-18 07:04:52.334 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-18 07:04:52.334 -07 000000561 INF: Z Motor: MoveAbsStepped took 1018 ms (did NOT wait for settling yet)) 17-03-18 07:04:52.624 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.994908, 17-03-18 07:04:52.694 -07 000000430 INF: FPGA: Recv YMVTILE 17-03-18 07:04:52.694 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall 17-03-18 07:04:52.744 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:52.744 -07 000000606 INF: FPGA: Recv YRDPOS 131186 17-03-18 07:04:52.754 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:04:52.754 -07 000000608 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:52.754 -07 000000608 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm) 17-03-18 07:04:52.754 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.223 mm/sec 17-03-18 07:04:53.704 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:53.704 -07 000000591 INF: FPGA: Recv YRDPOS 131186 17-03-18 07:04:53.714 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:53.714 -07 000000608 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:53.744 -07 000000608 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:04:53.744 -07 000000608 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:04:53.744 -07 000000608 INF: Y Motor: Moved to 64.0557 after 2971 ms (table move) 17-03-18 07:04:53.744 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176594 mm (DAC = 38577) 17-03-18 07:04:53.744 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:53.754 -07 000000581 INF: FPGA: Recv ZSGSRD 36788 17-03-18 07:04:53.754 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 07:04:53.754 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:53.754 -07 000000430 INF: FPGA: Recv ZSGSRD 36778 17-03-18 07:04:53.764 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:53.764 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:53.764 -07 000000430 INF: FPGA: Recv ZSGSRD 36777 17-03-18 07:04:53.774 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:53.784 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:53.784 -07 000000430 INF: FPGA: Recv ZSGSRD 36785 17-03-18 07:04:53.794 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:04:53.804 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:53.804 -07 000000430 INF: FPGA: Recv ZSGSRD 36780 17-03-18 07:04:53.814 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:04:53.834 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:53.834 -07 000000626 INF: FPGA: Recv ZSGSRD 36784 17-03-18 07:04:53.844 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 07:04:53.844 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:53.844 -07 000000591 INF: FPGA: Recv ZSGSRD 36775 17-03-18 07:04:53.854 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:53.864 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:53.864 -07 000000625 INF: FPGA: Recv ZSGSRD 36781 17-03-18 07:04:53.874 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:04:53.874 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:53.874 -07 000000606 INF: FPGA: Recv ZSGSRD 36783 17-03-18 07:04:53.884 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:53.884 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:53.884 -07 000000512 INF: FPGA: Recv ZSGSRD 36778 17-03-18 07:04:53.894 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:53.894 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:53.894 -07 000000430 INF: FPGA: Recv ZPIEZORD 32970 17-03-18 07:04:53.904 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:53.904 -07 000000569 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.886 V. Piezo Error = -8.4 V. 17-03-18 07:04:53.904 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36781 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36780 (-175.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36775 (-175.7 uncal um), Max = 36788 (-175.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:04:53.904 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36781, posNoise = 7, negNoise = 6 17-03-18 07:04:53.904 -07 000000569 INF: Z Motor: After move to -0.176594, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:53.904 -07 000000569 INF: Z Motor: Settle wait time = 2435 ms, measure time = 153 ms (allowed 150 ms), total time = 2588 ms 17-03-18 07:04:53.904 -07 000000569 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms 17-03-18 07:04:53.904 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3260 ms 17-03-18 07:04:53.904 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:04:53.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:04:53.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:04:53.904 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:04:53.904 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:04:53.904 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 07:04:53.904 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:04:53.904 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 07:04:53.904 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 07:04:53.914 -07 000000581 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 07:04:53.914 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 07:04:53.914 -07 000000581 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 07:04:53.914 -07 000000581 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-18 07:04:53.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 07:04:53.974 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 07:04:54.274 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 07:04:54.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 07:04:54.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 07:04:54.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start. 17-03-18 07:04:54.314 -07 000000430 INF: FPGA: Recv @CAMSNAP 380 17-03-18 07:04:54.314 -07 000000561 INF: FPGA: Recv CAMSNAP 17-03-18 07:04:54.314 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 388 ms overall 17-03-18 07:04:54.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 124 ms. 17-03-18 07:04:54.394 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:54.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 07:04:54.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms. 17-03-18 07:04:54.414 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:04:54.414 -07 000000606 INF: Autofocus start 17-03-18 07:04:54.414 -07 000000606 INF: MeasureProfile start 17-03-18 07:04:54.414 -07 000000430 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:04:54.424 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:04:54.424 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 07:04:54.424 -07 000000606 INF: MeasureProfile done 17-03-18 07:04:54.424 -07 000000606 INF: X=-16 Z correction [um]=-0.1496812 17-03-18 07:04:54.424 -07 000000606 INF: Autofocus finished 17-03-18 07:04:54.624 -07 000000569 INF: FPGA: Recv FOCMRRIMG 17-03-18 07:04:54.624 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 07:04:54.624 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176612298797245. ---------- 17-03-18 07:04:54.624 -07 000000610 INF: Cycle 157 Tile 6 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:04:54.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37057, sync = True, waitForSettling = True) 17-03-18 07:04:54.634 -07 000000610 INF: Z Motor: Moving to -0.169636 mm, started at -0.176612 mm, distance = 6.98 um 17-03-18 07:04:54.634 -07 000000610 INF: FPGA: Xmit ZDACW 37057\n [Z Motor] 17-03-18 07:04:54.634 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 07:04:54.644 -07 000000610 INF: FPGA: 'ZDACW 37057' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:54.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:54.644 -07 000000569 INF: FPGA: Recv ZDACR 37057 17-03-18 07:04:54.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:54.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:04:54.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:54.804 -07 000000608 INF: FPGA: Recv ZSGSRD 35695 17-03-18 07:04:54.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:54.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:54.814 -07 000000430 INF: FPGA: Recv ZSGSRD 35695 17-03-18 07:04:54.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:54.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:54.824 -07 000000608 INF: FPGA: Recv ZSGSRD 35694 17-03-18 07:04:54.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:54.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:54.834 -07 000000430 INF: FPGA: Recv ZSGSRD 35698 17-03-18 07:04:54.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:54.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:54.844 -07 000000608 INF: FPGA: Recv ZSGSRD 35698 17-03-18 07:04:54.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:54.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:54.854 -07 000000606 INF: FPGA: Recv ZSGSRD 35699 17-03-18 07:04:54.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:04:54.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:54.864 -07 000000581 INF: FPGA: Recv ZSGSRD 35696 17-03-18 07:04:54.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:54.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:54.874 -07 000000606 INF: FPGA: Recv ZSGSRD 35695 17-03-18 07:04:54.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:54.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:54.884 -07 000000606 INF: FPGA: Recv ZSGSRD 35695 17-03-18 07:04:54.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:54.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:54.894 -07 000000581 INF: FPGA: Recv ZSGSRD 35698 17-03-18 07:04:54.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:54.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:54.904 -07 000000606 INF: FPGA: Recv ZPIEZORD 31523 17-03-18 07:04:54.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:54.914 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.655 V. Piezo Error = -9.2 V. 17-03-18 07:04:54.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35696 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35696 (-168.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35694 (-168.8 uncal um), Max = 35699 (-168.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um) 17-03-18 07:04:54.914 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35696, posNoise = 3, negNoise = 2 17-03-18 07:04:54.914 -07 000000610 INF: Z Motor: After move to -0.169636, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:54.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 07:04:54.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:04:54.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:04:54.914 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:04:54.914 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:04:54.914 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:04:54.914 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:04:54.914 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:04:54.914 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:04:54.914 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:04:54.914 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:04:54.914 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:04:54.914 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:04:54.914 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:04:54.914 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:04:54.924 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-18 07:04:54.924 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:04:54.934 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 07:04:54.934 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 07:04:54.934 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 07:04:54.934 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:04:54.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37233 150\n [Camera] 17-03-18 07:04:55.144 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:04:55.614 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:04:55.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:04:55.614 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:55.614 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:04:55.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:04:55.614 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:55.614 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:55.624 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 07:04:55.624 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:55.624 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-18 07:04:55.804 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37233 859 17-03-18 07:04:55.954 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:04:56.004 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 381 ms. 17-03-18 07:04:56.004 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms. 17-03-18 07:04:56.004 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:56.004 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 388 ms. 17-03-18 07:04:56.004 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-18 07:04:56.004 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:56.004 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:56.014 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:56.014 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 07:04:56.014 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 07:04:56.184 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:04:56.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:04:56.184 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:56.184 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:04:56.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:04:56.184 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:56.304 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:56.304 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start. 17-03-18 07:04:56.314 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:56.314 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:04:56.374 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1433 17-03-18 07:04:56.384 -07 000000625 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:04:56.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37233 150' command took 2 ms to send, 1430 ms to get response, and 1440 ms overall 17-03-18 07:04:56.384 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.169981 17-03-18 07:04:56.384 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.16998 mm 17-03-18 07:04:56.384 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:04:56.384 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37132, sync = True, waitForSettling = False) 17-03-18 07:04:56.384 -07 000000430 INF: Z Motor: Moving to -0.169979 mm, started at -0.169642 mm, distance = -0.34 um 17-03-18 07:04:56.384 -07 000000430 INF: FPGA: Xmit ZDACW 37132\n [Z Motor] 17-03-18 07:04:56.384 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True) 17-03-18 07:04:56.384 -07 000000606 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm 17-03-18 07:04:56.384 -07 000000625 INF: FPGA: Recv ZDACW 17-03-18 07:04:56.394 -07 000000430 INF: FPGA: 'ZDACW 37132' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:04:56.394 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:56.394 -07 000000625 INF: FPGA: Recv YRDPOS 131186 17-03-18 07:04:56.404 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 07:04:56.404 -07 000000606 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:56.404 -07 000000606 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:04:56.404 -07 000000606 INF: Y Motor: Moving 1339 steps-14 17-03-18 07:04:56.404 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:56.404 -07 000000625 INF: FPGA: Recv ZDACR 37132 17-03-18 07:04:56.414 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:04:56.414 -07 000000430 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet)) 17-03-18 07:04:56.414 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:04:56.684 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms. 17-03-18 07:04:56.684 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms. 17-03-18 07:04:56.684 -07 000000591 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:56.684 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms. 17-03-18 07:04:56.684 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms. 17-03-18 07:04:56.684 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:56.694 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:56.694 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:56.694 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms. 17-03-18 07:04:56.694 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms. 17-03-18 07:04:56.784 -07 000000591 INF: FPGA: Recv YMVTILE 17-03-18 07:04:56.784 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 07:04:56.844 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:56.844 -07 000000430 INF: FPGA: Recv YRDPOS 132869 17-03-18 07:04:56.854 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:56.854 -07 000000606 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:56.854 -07 000000606 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-18 07:04:56.854 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec 17-03-18 07:04:56.924 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:04:56.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:04:57.804 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:57.804 -07 000000512 INF: FPGA: Recv YRDPOS 132869 17-03-18 07:04:57.814 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:57.814 -07 000000606 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:57.844 -07 000000606 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:04:57.844 -07 000000606 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:04:57.844 -07 000000606 INF: Y Motor: Moved to 64.8774 after 1457 ms (table move) 17-03-18 07:04:57.844 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169979 mm (DAC = 37132) 17-03-18 07:04:57.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:57.854 -07 000000430 INF: FPGA: Recv ZSGSRD 35744 17-03-18 07:04:57.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:04:57.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:57.854 -07 000000606 INF: FPGA: Recv ZSGSRD 35754 17-03-18 07:04:57.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:57.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:57.864 -07 000000512 INF: FPGA: Recv ZSGSRD 35750 17-03-18 07:04:57.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:57.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:57.874 -07 000000591 INF: FPGA: Recv ZSGSRD 35750 17-03-18 07:04:57.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:57.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:57.884 -07 000000512 INF: FPGA: Recv ZSGSRD 35748 17-03-18 07:04:57.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:57.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:57.894 -07 000000430 INF: FPGA: Recv ZSGSRD 35745 17-03-18 07:04:57.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:57.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:57.904 -07 000000430 INF: FPGA: Recv ZSGSRD 35747 17-03-18 07:04:57.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:57.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:57.914 -07 000000430 INF: FPGA: Recv ZSGSRD 35750 17-03-18 07:04:57.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:57.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:57.924 -07 000000606 INF: FPGA: Recv ZSGSRD 35751 17-03-18 07:04:57.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:57.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:57.934 -07 000000606 INF: FPGA: Recv ZSGSRD 35755 17-03-18 07:04:57.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:57.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:57.944 -07 000000625 INF: FPGA: Recv ZPIEZORD 31638 17-03-18 07:04:57.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:57.954 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -9.1 V. 17-03-18 07:04:57.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35749 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35750 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35744 (-169.1 uncal um), Max = 35755 (-169.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 07:04:57.954 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35749, posNoise = 6, negNoise = 5 17-03-18 07:04:57.954 -07 000000610 INF: Z Motor: After move to -0.169979, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:57.954 -07 000000610 INF: Z Motor: Settle wait time = 1461 ms, measure time = 104 ms (allowed 150 ms), total time = 1565 ms 17-03-18 07:04:57.954 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-18 07:04:57.984 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.985358, 17-03-18 07:04:58.004 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms 17-03-18 07:04:58.004 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:04:58.004 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.169982511866947. ---------- 17-03-18 07:04:58.004 -07 000000610 INF: Cycle 157 Tile 7 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:04:58.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36956, sync = True, waitForSettling = True) 17-03-18 07:04:58.004 -07 000000610 INF: Z Motor: Moving to -0.169174 mm, started at -0.169983 mm, distance = 0.81 um 17-03-18 07:04:58.024 -07 000000610 INF: FPGA: Xmit ZDACW 36956\n [Z Motor] 17-03-18 07:04:58.024 -07 000000591 INF: FPGA: Recv ZDACW 17-03-18 07:04:58.034 -07 000000610 INF: FPGA: 'ZDACW 36956' command took 0 ms to send, 0 ms to get response, and 23 ms overall 17-03-18 07:04:58.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:58.034 -07 000000512 INF: FPGA: Recv ZDACR 36956 17-03-18 07:04:58.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:58.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:04:58.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:58.194 -07 000000606 INF: FPGA: Recv ZSGSRD 35622 17-03-18 07:04:58.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:04:58.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:58.204 -07 000000430 INF: FPGA: Recv ZSGSRD 35622 17-03-18 07:04:58.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:58.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:58.214 -07 000000606 INF: FPGA: Recv ZSGSRD 35630 17-03-18 07:04:58.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:58.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:58.224 -07 000000437 INF: FPGA: Recv ZSGSRD 35623 17-03-18 07:04:58.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:58.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:58.234 -07 000000591 INF: FPGA: Recv ZSGSRD 35625 17-03-18 07:04:58.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:58.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:58.244 -07 000000430 INF: FPGA: Recv ZSGSRD 35624 17-03-18 07:04:58.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:58.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:58.254 -07 000000625 INF: FPGA: Recv ZSGSRD 35624 17-03-18 07:04:58.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:58.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:58.264 -07 000000437 INF: FPGA: Recv ZSGSRD 35626 17-03-18 07:04:58.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:58.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:58.274 -07 000000625 INF: FPGA: Recv ZSGSRD 35625 17-03-18 07:04:58.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:58.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:04:58.284 -07 000000430 INF: FPGA: Recv ZSGSRD 35628 17-03-18 07:04:58.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:58.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:04:58.294 -07 000000625 INF: FPGA: Recv ZPIEZORD 31449 17-03-18 07:04:58.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:58.304 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.639 V. Piezo Error = -9.2 V. 17-03-18 07:04:58.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35625 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35624 (-168.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35622 (-168.3 uncal um), Max = 35630 (-168.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-18 07:04:58.304 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35625, posNoise = 5, negNoise = 3 17-03-18 07:04:58.304 -07 000000610 INF: Z Motor: After move to -0.169174, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:04:58.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 296 ms) 17-03-18 07:04:58.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:04:58.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:04:58.304 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:04:58.304 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:04:58.304 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:04:58.304 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:04:58.304 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:04:58.304 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:04:58.304 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:04:58.304 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:04:58.304 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:04:58.304 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:04:58.314 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 07:04:58.314 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:04:58.314 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 07:04:58.314 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:04:58.324 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 07:04:58.324 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms. 17-03-18 07:04:58.324 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 07:04:58.324 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms. 17-03-18 07:04:58.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37132 150\n [Camera] 17-03-18 07:04:58.524 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:04:59.004 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:04:59.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:04:59.004 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:59.004 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:04:59.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:04:59.004 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:59.004 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:59.004 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2466021592, 0x0, 391868352) start. 17-03-18 07:04:59.004 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:59.004 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 07:04:59.194 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37132 859 17-03-18 07:04:59.344 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:04:59.404 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2466021592, 0x0, 391868352) end. Duration was 393 ms. 17-03-18 07:04:59.404 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-18 07:04:59.404 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:59.404 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms. 17-03-18 07:04:59.404 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-18 07:04:59.404 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:59.404 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:59.404 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 07:04:59.404 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:59.414 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-18 07:04:59.574 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:04:59.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:04:59.574 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:04:59.574 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:04:59.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:04:59.574 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:04:59.574 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:04:59.574 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-18 07:04:59.574 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:04:59.574 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-18 07:04:59.764 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:04:59.764 -07 000000606 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:04:59.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37132 150' command took 4 ms to send, 1423 ms to get response, and 1437 ms overall 17-03-18 07:04:59.764 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.169916 17-03-18 07:04:59.764 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.16992 mm 17-03-18 07:04:59.764 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:04:59.764 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37118, sync = True, waitForSettling = False) 17-03-18 07:04:59.774 -07 000000606 INF: Z Motor: Moving to -0.169915 mm, started at -0.169186 mm, distance = -0.73 um 17-03-18 07:04:59.774 -07 000000606 INF: FPGA: Xmit ZDACW 37118\n [Z Motor] 17-03-18 07:04:59.774 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True) 17-03-18 07:04:59.774 -07 000000625 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm 17-03-18 07:04:59.774 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 07:04:59.784 -07 000000606 INF: FPGA: 'ZDACW 37118' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:59.784 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:04:59.784 -07 000000430 INF: FPGA: Recv ZDACR 37118 17-03-18 07:04:59.794 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:04:59.794 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:04:59.794 -07 000000606 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet)) 17-03-18 07:04:59.794 -07 000000561 INF: FPGA: Recv YRDPOS 132870 17-03-18 07:04:59.804 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 07:04:59.804 -07 000000625 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:04:59.804 -07 000000625 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:04:59.804 -07 000000625 INF: Y Motor: Moving 1351 steps-31 17-03-18 07:04:59.804 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:04:59.974 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms. 17-03-18 07:04:59.974 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 07:04:59.974 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:59.974 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms. 17-03-18 07:04:59.974 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 07:04:59.974 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:04:59.974 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:04:59.974 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-18 07:04:59.974 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:04:59.984 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-18 07:05:00.184 -07 000000581 INF: FPGA: Recv YMVTILE 17-03-18 07:05:00.184 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 378 ms overall 17-03-18 07:05:00.234 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:00.234 -07 000000474 INF: FPGA: Recv YRDPOS 134580 17-03-18 07:05:00.244 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:05:00.244 -07 000000625 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:00.244 -07 000000625 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-18 07:05:00.244 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.236 mm/sec 17-03-18 07:05:01.194 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:01.194 -07 000000512 INF: FPGA: Recv YRDPOS 134580 17-03-18 07:05:01.204 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:01.204 -07 000000625 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:01.244 -07 000000625 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:01.244 -07 000000625 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:05:01.244 -07 000000625 INF: Y Motor: Moved to 65.7129 after 1470 ms (table move) 17-03-18 07:05:01.244 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169915 mm (DAC = 37118) 17-03-18 07:05:01.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.244 -07 000000625 INF: FPGA: Recv ZSGSRD 35738 17-03-18 07:05:01.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:05:01.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.254 -07 000000606 INF: FPGA: Recv ZSGSRD 35744 17-03-18 07:05:01.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.264 -07 000000512 INF: FPGA: Recv ZSGSRD 35740 17-03-18 07:05:01.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.274 -07 000000606 INF: FPGA: Recv ZSGSRD 35736 17-03-18 07:05:01.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.284 -07 000000512 INF: FPGA: Recv ZSGSRD 35728 17-03-18 07:05:01.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.294 -07 000000625 INF: FPGA: Recv ZSGSRD 35739 17-03-18 07:05:01.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.304 -07 000000512 INF: FPGA: Recv ZSGSRD 35747 17-03-18 07:05:01.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:01.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.314 -07 000000512 INF: FPGA: Recv ZSGSRD 35741 17-03-18 07:05:01.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.324 -07 000000606 INF: FPGA: Recv ZSGSRD 35746 17-03-18 07:05:01.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.334 -07 000000474 INF: FPGA: Recv ZSGSRD 35738 17-03-18 07:05:01.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:01.344 -07 000000512 INF: FPGA: Recv ZPIEZORD 31556 17-03-18 07:05:01.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.354 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -9.2 V. 17-03-18 07:05:01.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35740 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35740 (-169.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35728 (-169.0 uncal um), Max = 35747 (-169.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um) 17-03-18 07:05:01.354 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35740, posNoise = 7, negNoise = 12 17-03-18 07:05:01.354 -07 000000610 INF: Z Motor: After move to -0.169915, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:01.354 -07 000000610 INF: Z Motor: Settle wait time = 1474 ms, measure time = 106 ms (allowed 150 ms), total time = 1580 ms 17-03-18 07:05:01.354 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:01.404 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms 17-03-18 07:05:01.404 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:01.404 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.169924693957672. ---------- 17-03-18 07:05:01.404 -07 000000610 INF: Cycle 157 Tile 8 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:01.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36941, sync = True, waitForSettling = True) 17-03-18 07:05:01.404 -07 000000610 INF: Z Motor: Moving to -0.169105 mm, started at -0.169925 mm, distance = 0.82 um 17-03-18 07:05:01.404 -07 000000610 INF: FPGA: Xmit ZDACW 36941\n [Z Motor] 17-03-18 07:05:01.404 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 07:05:01.414 -07 000000610 INF: FPGA: 'ZDACW 36941' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:05:01.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:01.414 -07 000000606 INF: FPGA: Recv ZDACR 36941 17-03-18 07:05:01.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:01.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.574 -07 000000625 INF: FPGA: Recv ZSGSRD 35619 17-03-18 07:05:01.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:01.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.584 -07 000000512 INF: FPGA: Recv ZSGSRD 35617 17-03-18 07:05:01.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.594 -07 000000430 INF: FPGA: Recv ZSGSRD 35613 17-03-18 07:05:01.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.604 -07 000000474 INF: FPGA: Recv ZSGSRD 35608 17-03-18 07:05:01.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.614 -07 000000625 INF: FPGA: Recv ZSGSRD 35611 17-03-18 07:05:01.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.624 -07 000000430 INF: FPGA: Recv ZSGSRD 35618 17-03-18 07:05:01.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.634 -07 000000512 INF: FPGA: Recv ZSGSRD 35614 17-03-18 07:05:01.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.644 -07 000000430 INF: FPGA: Recv ZSGSRD 35613 17-03-18 07:05:01.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.654 -07 000000512 INF: FPGA: Recv ZSGSRD 35612 17-03-18 07:05:01.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:01.664 -07 000000474 INF: FPGA: Recv ZSGSRD 35615 17-03-18 07:05:01.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:01.674 -07 000000474 INF: FPGA: Recv ZPIEZORD 31411 17-03-18 07:05:01.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:01.684 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.3 V. 17-03-18 07:05:01.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35614 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35614 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35608 (-168.2 uncal um), Max = 35619 (-168.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:05:01.684 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35614, posNoise = 5, negNoise = 6 17-03-18 07:05:01.684 -07 000000610 INF: Z Motor: After move to -0.169105, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:01.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 07:05:01.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:01.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:01.684 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:01.684 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:01.684 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:01.684 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:01.684 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:01.684 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:01.684 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:05:01.684 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:01.684 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:05:01.684 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:01.694 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:05:01.694 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:01.694 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:05:01.694 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:01.704 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 07:05:01.704 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:05:01.704 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 07:05:01.704 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:05:01.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37118 150\n [Camera] 17-03-18 07:05:01.914 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:05:01.924 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:05:01.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:05:02.384 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:05:02.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:05:02.384 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:05:02.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:05:02.384 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:02.384 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:02.384 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start. 17-03-18 07:05:02.384 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:02.384 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:02.384 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start. 17-03-18 07:05:02.574 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37118 859 17-03-18 07:05:02.724 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:05:02.764 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 376 ms. 17-03-18 07:05:02.764 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms. 17-03-18 07:05:02.764 -07 000000437 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:02.764 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 380 ms. 17-03-18 07:05:02.764 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms. 17-03-18 07:05:02.764 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:02.774 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:02.774 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:02.774 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 07:05:02.774 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 07:05:02.954 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:05:02.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:05:02.954 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:03.084 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:05:03.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:05:03.084 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:03.084 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:03.084 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-18 07:05:03.094 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:03.094 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-18 07:05:03.144 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:05:03.144 -07 000000606 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:03.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37118 150' command took 2 ms to send, 1427 ms to get response, and 1437 ms overall 17-03-18 07:05:03.144 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169495 17-03-18 07:05:03.154 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16950 mm 17-03-18 07:05:03.154 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:03.154 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True) 17-03-18 07:05:03.154 -07 000000626 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm 17-03-18 07:05:03.154 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:03.154 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 37026, sync = True, waitForSettling = False) 17-03-18 07:05:03.154 -07 000000581 INF: Z Motor: Moving to -0.169494 mm, started at -0.169115 mm, distance = -0.38 um 17-03-18 07:05:03.154 -07 000000430 INF: FPGA: Recv YRDPOS 134580 17-03-18 07:05:03.164 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:05:03.164 -07 000000626 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:03.164 -07 000000626 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:05:03.164 -07 000000626 INF: Y Motor: Moving 1344 steps-20 17-03-18 07:05:03.164 -07 000000581 INF: FPGA: Xmit ZDACW 37026\n [Z Motor] 17-03-18 07:05:03.164 -07 000000474 INF: FPGA: Recv ZDACW 17-03-18 07:05:03.174 -07 000000581 INF: FPGA: 'ZDACW 37026' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 07:05:03.174 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:03.174 -07 000000625 INF: FPGA: Recv ZDACR 37026 17-03-18 07:05:03.184 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:05:03.184 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:03.184 -07 000000581 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet)) 17-03-18 07:05:03.404 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.004458, 17-03-18 07:05:03.464 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 376 ms. 17-03-18 07:05:03.464 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms. 17-03-18 07:05:03.464 -07 000000437 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:03.464 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 376 ms. 17-03-18 07:05:03.464 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms. 17-03-18 07:05:03.464 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:03.474 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 07:05:03.474 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms. 17-03-18 07:05:03.474 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:03.474 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 07:05:03.554 -07 000000474 INF: FPGA: Recv YMVTILE 17-03-18 07:05:03.554 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:05:03.614 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:03.614 -07 000000474 INF: FPGA: Recv YRDPOS 136269 17-03-18 07:05:03.624 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:05:03.624 -07 000000626 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:03.624 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-18 07:05:03.624 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec 17-03-18 07:05:04.574 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:04.574 -07 000000430 INF: FPGA: Recv YRDPOS 136270 17-03-18 07:05:04.584 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.584 -07 000000626 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:04.614 -07 000000626 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:04.614 -07 000000626 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 07:05:04.614 -07 000000626 INF: Y Motor: Moved to 66.5381 after 1463 ms (table move) 17-03-18 07:05:04.614 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169494 mm (DAC = 37026) 17-03-18 07:05:04.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.624 -07 000000625 INF: FPGA: Recv ZSGSRD 35676 17-03-18 07:05:04.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-18 07:05:04.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.624 -07 000000437 INF: FPGA: Recv ZSGSRD 35677 17-03-18 07:05:04.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:05:04.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.634 -07 000000474 INF: FPGA: Recv ZSGSRD 35676 17-03-18 07:05:04.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.644 -07 000000625 INF: FPGA: Recv ZSGSRD 35672 17-03-18 07:05:04.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.654 -07 000000512 INF: FPGA: Recv ZSGSRD 35668 17-03-18 07:05:04.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.664 -07 000000430 INF: FPGA: Recv ZSGSRD 35680 17-03-18 07:05:04.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.674 -07 000000437 INF: FPGA: Recv ZSGSRD 35668 17-03-18 07:05:04.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.684 -07 000000430 INF: FPGA: Recv ZSGSRD 35674 17-03-18 07:05:04.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.694 -07 000000437 INF: FPGA: Recv ZSGSRD 35674 17-03-18 07:05:04.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.704 -07 000000569 INF: FPGA: Recv ZSGSRD 35682 17-03-18 07:05:04.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:04.714 -07 000000474 INF: FPGA: Recv ZPIEZORD 31526 17-03-18 07:05:04.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.724 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -9.2 V. 17-03-18 07:05:04.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35675 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35675 (-168.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35668 (-168.6 uncal um), Max = 35682 (-168.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:05:04.724 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35675, posNoise = 7, negNoise = 7 17-03-18 07:05:04.724 -07 000000610 INF: Z Motor: After move to -0.169494, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:04.724 -07 000000610 INF: Z Motor: Settle wait time = 1465 ms, measure time = 102 ms (allowed 150 ms), total time = 1567 ms 17-03-18 07:05:04.724 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:04.774 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms 17-03-18 07:05:04.774 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:04.774 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.169507120168457. ---------- 17-03-18 07:05:04.774 -07 000000610 INF: Cycle 157 Tile 9 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:04.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36849, sync = True, waitForSettling = True) 17-03-18 07:05:04.774 -07 000000610 INF: Z Motor: Moving to -0.168684 mm, started at -0.169507 mm, distance = 0.82 um 17-03-18 07:05:04.774 -07 000000610 INF: FPGA: Xmit ZDACW 36849\n [Z Motor] 17-03-18 07:05:04.784 -07 000000430 INF: FPGA: Recv ZDACW 17-03-18 07:05:04.784 -07 000000610 INF: FPGA: 'ZDACW 36849' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:05:04.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:04.784 -07 000000626 INF: FPGA: Recv ZDACR 36849 17-03-18 07:05:04.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:04.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.944 -07 000000569 INF: FPGA: Recv ZSGSRD 35554 17-03-18 07:05:04.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:04.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.954 -07 000000430 INF: FPGA: Recv ZSGSRD 35550 17-03-18 07:05:04.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.964 -07 000000626 INF: FPGA: Recv ZSGSRD 35553 17-03-18 07:05:04.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.974 -07 000000430 INF: FPGA: Recv ZSGSRD 35542 17-03-18 07:05:04.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.984 -07 000000569 INF: FPGA: Recv ZSGSRD 35549 17-03-18 07:05:04.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:04.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:04.994 -07 000000474 INF: FPGA: Recv ZSGSRD 35552 17-03-18 07:05:05.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:05.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:05.004 -07 000000569 INF: FPGA: Recv ZSGSRD 35545 17-03-18 07:05:05.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:05.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:05.014 -07 000000430 INF: FPGA: Recv ZSGSRD 35551 17-03-18 07:05:05.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:05.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:05.024 -07 000000626 INF: FPGA: Recv ZSGSRD 35549 17-03-18 07:05:05.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:05.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:05.034 -07 000000430 INF: FPGA: Recv ZSGSRD 35546 17-03-18 07:05:05.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:05.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:05.044 -07 000000474 INF: FPGA: Recv ZPIEZORD 31354 17-03-18 07:05:05.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:05.054 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.623 V. Piezo Error = -9.2 V. 17-03-18 07:05:05.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35549 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35550 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35542 (-167.8 uncal um), Max = 35554 (-167.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:05:05.054 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35549, posNoise = 5, negNoise = 7 17-03-18 07:05:05.054 -07 000000610 INF: Z Motor: After move to -0.168684, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:05.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 07:05:05.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:05.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:05.054 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:05.054 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:05.054 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:05.054 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:05.054 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:05.054 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:05.054 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:05:05.054 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:05:05.054 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:05.054 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:05.064 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:05:05.064 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:05.064 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms. 17-03-18 07:05:05.064 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:05.074 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 07:05:05.074 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms. 17-03-18 07:05:05.074 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 07:05:05.074 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms. 17-03-18 07:05:05.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37026 150\n [Camera] 17-03-18 07:05:05.284 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 195 17-03-18 07:05:05.754 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:05:05.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:05:05.754 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:05.754 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:05:05.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:05:05.754 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:05.764 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:05.764 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 07:05:05.764 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:05.764 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-18 07:05:05.944 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37026 859 17-03-18 07:05:06.094 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:05:06.134 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms. 17-03-18 07:05:06.134 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms. 17-03-18 07:05:06.134 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:06.134 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 370 ms. 17-03-18 07:05:06.134 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms. 17-03-18 07:05:06.134 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:06.134 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:05:06.134 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 07:05:06.134 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:06.144 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-18 07:05:06.324 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:05:06.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:05:06.324 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:06.324 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:06.324 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-18 07:05:06.324 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:05:06.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:05:06.324 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:06.444 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:06.454 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:05:06.514 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1429 17-03-18 07:05:06.514 -07 000000569 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:06.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37026 150' command took 2 ms to send, 1427 ms to get response, and 1436 ms overall 17-03-18 07:05:06.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 07:05:06.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.168697669438595. ------ 17-03-18 07:05:06.524 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:05:06.524 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17558 mm 17-03-18 07:05:06.524 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:06.524 -07 000000561 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:05:06.524 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True) 17-03-18 07:05:06.524 -07 000000626 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm 17-03-18 07:05:06.524 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38356, sync = True, waitForSettling = False) 17-03-18 07:05:06.524 -07 000000591 INF: Z Motor: Moving to -0.175583 mm, started at -0.168698 mm, distance = -6.88 um 17-03-18 07:05:06.534 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:05:06.534 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 07:05:06.544 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:06.544 -07 000000606 INF: FPGA: Recv YRDPOS 136270 17-03-18 07:05:06.554 -07 000000591 INF: FPGA: Xmit ZDACW 38356\n [Z Motor] 17-03-18 07:05:06.554 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-18 07:05:06.554 -07 000000626 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:06.554 -07 000000626 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:05:06.554 -07 000000626 INF: Y Motor: Moving 1351 steps-31 17-03-18 07:05:06.554 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 07:05:06.564 -07 000000591 INF: FPGA: 'ZDACW 38356' command took 0 ms to send, 0 ms to get response, and 32 ms overall 17-03-18 07:05:06.564 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:06.564 -07 000000561 INF: FPGA: Recv ZDACR 38356 17-03-18 07:05:06.574 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:06.574 -07 000000591 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet)) 17-03-18 07:05:06.574 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:05:06.714 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms. 17-03-18 07:05:06.714 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-18 07:05:06.714 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:06.714 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:06.714 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-18 07:05:06.734 -07 000000437 INF: FPGA: Recv FOCMRRFOC 17-03-18 07:05:06.734 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 07:05:06.844 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 397 ms. 17-03-18 07:05:06.844 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 07:05:06.844 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:06.854 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:06.864 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 532 ms. 17-03-18 07:05:06.924 -07 000000625 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:05:06.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:05:06.954 -07 000000581 INF: FPGA: Recv YMVTILE 17-03-18 07:05:06.954 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall 17-03-18 07:05:07.014 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:07.014 -07 000000591 INF: FPGA: Recv YRDPOS 137975 17-03-18 07:05:07.024 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:07.024 -07 000000626 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:07.024 -07 000000626 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm) 17-03-18 07:05:07.024 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.845 mm, average velocity = 2.111 mm/sec 17-03-18 07:05:07.974 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:07.974 -07 000000625 INF: FPGA: Recv YRDPOS 137976 17-03-18 07:05:07.984 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:07.984 -07 000000626 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:08.014 -07 000000626 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:08.014 -07 000000626 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 07:05:08.014 -07 000000626 INF: Y Motor: Moved to 67.3711 after 1486 ms (table move) 17-03-18 07:05:08.014 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175583 mm (DAC = 38356) 17-03-18 07:05:08.014 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:08.024 -07 000000591 INF: FPGA: Recv ZSGSRD 36620 17-03-18 07:05:08.024 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 07:05:08.024 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:08.024 -07 000000608 INF: FPGA: Recv ZSGSRD 36628 17-03-18 07:05:08.034 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:08.034 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:08.034 -07 000000608 INF: FPGA: Recv ZSGSRD 36620 17-03-18 07:05:08.044 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:08.044 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:08.044 -07 000000608 INF: FPGA: Recv ZSGSRD 36622 17-03-18 07:05:08.054 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:08.054 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:08.054 -07 000000608 INF: FPGA: Recv ZSGSRD 36617 17-03-18 07:05:08.064 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:08.064 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:08.064 -07 000000626 INF: FPGA: Recv ZSGSRD 36617 17-03-18 07:05:08.074 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:08.074 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:08.074 -07 000000626 INF: FPGA: Recv ZSGSRD 36621 17-03-18 07:05:08.084 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:08.084 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:08.084 -07 000000608 INF: FPGA: Recv ZSGSRD 36621 17-03-18 07:05:08.094 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:08.094 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:08.094 -07 000000608 INF: FPGA: Recv ZSGSRD 36626 17-03-18 07:05:08.104 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:08.104 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:08.104 -07 000000608 INF: FPGA: Recv ZSGSRD 36623 17-03-18 07:05:08.114 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:08.114 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:08.114 -07 000000608 INF: FPGA: Recv ZPIEZORD 32787 17-03-18 07:05:08.124 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:08.124 -07 000000569 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.853 V. Piezo Error = -8.5 V. 17-03-18 07:05:08.124 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36622 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36621 (-174.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36617 (-174.7 uncal um), Max = 36628 (-174.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 07:05:08.124 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36622, posNoise = 6, negNoise = 5 17-03-18 07:05:08.124 -07 000000569 INF: Z Motor: After move to -0.175583, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:08.124 -07 000000569 INF: Z Motor: Settle wait time = 1489 ms, measure time = 103 ms (allowed 150 ms), total time = 1592 ms 17-03-18 07:05:08.124 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:08.174 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1646 ms 17-03-18 07:05:08.174 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:08.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:08.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:08.174 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:08.174 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:08.174 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 07:05:08.174 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:08.174 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:05:08.174 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 07:05:08.184 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 07:05:08.184 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 07:05:08.194 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-18 07:05:08.194 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-18 07:05:08.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 07:05:08.244 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 07:05:08.544 -07 000000437 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 07:05:08.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 07:05:08.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 07:05:08.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start. 17-03-18 07:05:08.584 -07 000000512 INF: FPGA: Recv @CAMSNAP 382 17-03-18 07:05:08.584 -07 000000569 INF: FPGA: Recv CAMSNAP 17-03-18 07:05:08.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 387 ms overall 17-03-18 07:05:08.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 126 ms. 17-03-18 07:05:08.674 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:08.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 07:05:08.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms. 17-03-18 07:05:08.684 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:05:08.684 -07 000000474 INF: Autofocus start 17-03-18 07:05:08.684 -07 000000474 INF: MeasureProfile start 17-03-18 07:05:08.684 -07 000000591 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:05:08.694 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:05:08.694 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 07:05:08.694 -07 000000474 INF: MeasureProfile done 17-03-18 07:05:08.694 -07 000000474 INF: X=16 Z correction [um]=0.01042744 17-03-18 07:05:08.694 -07 000000474 INF: Autofocus finished 17-03-18 07:05:08.764 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.005817, 17-03-18 07:05:08.894 -07 000000606 INF: FPGA: Recv FOCMRRIMG 17-03-18 07:05:08.894 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 07:05:08.894 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175590849066705. ---------- 17-03-18 07:05:08.904 -07 000000610 INF: Cycle 157 Tile 10 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:08.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36871, sync = True, waitForSettling = True) 17-03-18 07:05:08.904 -07 000000610 INF: Z Motor: Moving to -0.168785 mm, started at -0.175591 mm, distance = 6.81 um 17-03-18 07:05:08.904 -07 000000610 INF: FPGA: Xmit ZDACW 36871\n [Z Motor] 17-03-18 07:05:08.904 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 07:05:08.914 -07 000000610 INF: FPGA: 'ZDACW 36871' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:05:08.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:08.914 -07 000000591 INF: FPGA: Recv ZDACR 36871 17-03-18 07:05:08.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:08.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:09.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:09.074 -07 000000581 INF: FPGA: Recv ZSGSRD 35565 17-03-18 07:05:09.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:09.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:09.084 -07 000000591 INF: FPGA: Recv ZSGSRD 35565 17-03-18 07:05:09.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:09.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:09.094 -07 000000581 INF: FPGA: Recv ZSGSRD 35567 17-03-18 07:05:09.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:09.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:09.104 -07 000000591 INF: FPGA: Recv ZSGSRD 35563 17-03-18 07:05:09.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:09.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:09.114 -07 000000626 INF: FPGA: Recv ZSGSRD 35562 17-03-18 07:05:09.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:09.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:09.124 -07 000000437 INF: FPGA: Recv ZSGSRD 35563 17-03-18 07:05:09.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:09.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:09.134 -07 000000626 INF: FPGA: Recv ZSGSRD 35566 17-03-18 07:05:09.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:09.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:09.144 -07 000000591 INF: FPGA: Recv ZSGSRD 35563 17-03-18 07:05:09.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:09.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:09.154 -07 000000606 INF: FPGA: Recv ZSGSRD 35562 17-03-18 07:05:09.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:09.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:09.164 -07 000000591 INF: FPGA: Recv ZSGSRD 35562 17-03-18 07:05:09.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:09.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:09.174 -07 000000606 INF: FPGA: Recv ZPIEZORD 31383 17-03-18 07:05:09.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:09.184 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -9.2 V. 17-03-18 07:05:09.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35564 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35563 (-167.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35562 (-167.9 uncal um), Max = 35567 (-167.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um) 17-03-18 07:05:09.184 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35564, posNoise = 3, negNoise = 2 17-03-18 07:05:09.184 -07 000000610 INF: Z Motor: After move to -0.168785, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:09.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-18 07:05:09.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:09.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:09.184 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:09.184 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:09.184 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:09.184 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:09.184 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:09.184 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:09.184 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:05:09.184 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:09.184 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:05:09.184 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:09.184 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:05:09.184 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:09.194 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:05:09.194 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:09.194 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 07:05:09.194 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 07:05:09.194 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 07:05:09.194 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 07:05:09.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37047 150\n [Camera] 17-03-18 07:05:09.404 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:05:09.874 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:05:09.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:05:09.874 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:09.884 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:09.884 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 07:05:09.884 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:05:09.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:05:09.884 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:09.884 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:09.884 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-18 07:05:10.064 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37047 859 17-03-18 07:05:10.214 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:05:10.254 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms. 17-03-18 07:05:10.254 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms. 17-03-18 07:05:10.254 -07 000000437 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:10.264 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms. 17-03-18 07:05:10.264 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms. 17-03-18 07:05:10.264 -07 000000591 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:10.264 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:10.264 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-18 07:05:10.264 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:10.274 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-18 07:05:10.444 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:05:10.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:05:10.444 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:10.454 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:05:10.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:05:10.454 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:10.454 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:10.454 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start. 17-03-18 07:05:10.454 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:10.454 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start. 17-03-18 07:05:10.634 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:05:10.634 -07 000000591 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:10.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37047 150' command took 4 ms to send, 1429 ms to get response, and 1436 ms overall 17-03-18 07:05:10.644 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.168989 17-03-18 07:05:10.644 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16899 mm 17-03-18 07:05:10.644 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:10.644 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True) 17-03-18 07:05:10.644 -07 000000591 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm 17-03-18 07:05:10.644 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 36916, sync = True, waitForSettling = False) 17-03-18 07:05:10.644 -07 000000561 INF: Z Motor: Moving to -0.168991 mm, started at -0.168794 mm, distance = -0.20 um 17-03-18 07:05:10.644 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:10.644 -07 000000606 INF: FPGA: Recv YRDPOS 137976 17-03-18 07:05:10.654 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:05:10.654 -07 000000591 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:10.654 -07 000000591 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:05:10.654 -07 000000591 INF: Y Motor: Moving 1346 steps-25 17-03-18 07:05:10.654 -07 000000561 INF: FPGA: Xmit ZDACW 36916\n [Z Motor] 17-03-18 07:05:10.654 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 07:05:10.664 -07 000000561 INF: FPGA: 'ZDACW 36916' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 07:05:10.664 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:05:10.674 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:10.674 -07 000000474 INF: FPGA: Recv ZDACR 36916 17-03-18 07:05:10.684 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:05:10.684 -07 000000561 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet)) 17-03-18 07:05:10.834 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms. 17-03-18 07:05:10.834 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-18 07:05:10.834 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:10.834 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 384 ms. 17-03-18 07:05:10.834 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-18 07:05:10.834 -07 000000437 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:10.844 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:10.844 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:10.844 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-18 07:05:10.844 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-18 07:05:11.034 -07 000000625 INF: FPGA: Recv YMVTILE 17-03-18 07:05:11.034 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 07:05:11.094 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:11.094 -07 000000474 INF: FPGA: Recv YRDPOS 139681 17-03-18 07:05:11.104 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:05:11.104 -07 000000591 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:11.104 -07 000000591 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-18 07:05:11.104 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.842 mm, average velocity = 2.174 mm/sec 17-03-18 07:05:11.924 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:05:11.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:05:12.054 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:12.054 -07 000000608 INF: FPGA: Recv YRDPOS 139681 17-03-18 07:05:12.064 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:12.064 -07 000000591 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:12.094 -07 000000591 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:12.094 -07 000000591 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:05:12.094 -07 000000591 INF: Y Motor: Moved to 68.2036 after 1447 ms (table move) 17-03-18 07:05:12.094 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168991 mm (DAC = 36916) 17-03-18 07:05:12.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.094 -07 000000561 INF: FPGA: Recv ZSGSRD 35599 17-03-18 07:05:12.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:05:12.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.104 -07 000000512 INF: FPGA: Recv ZSGSRD 35596 17-03-18 07:05:12.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.114 -07 000000608 INF: FPGA: Recv ZSGSRD 35586 17-03-18 07:05:12.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.124 -07 000000512 INF: FPGA: Recv ZSGSRD 35590 17-03-18 07:05:12.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.134 -07 000000606 INF: FPGA: Recv ZSGSRD 35595 17-03-18 07:05:12.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.144 -07 000000512 INF: FPGA: Recv ZSGSRD 35594 17-03-18 07:05:12.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.154 -07 000000608 INF: FPGA: Recv ZSGSRD 35602 17-03-18 07:05:12.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.164 -07 000000437 INF: FPGA: Recv ZSGSRD 35598 17-03-18 07:05:12.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.174 -07 000000561 INF: FPGA: Recv ZSGSRD 35600 17-03-18 07:05:12.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.184 -07 000000437 INF: FPGA: Recv ZSGSRD 35597 17-03-18 07:05:12.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:12.194 -07 000000474 INF: FPGA: Recv ZPIEZORD 31437 17-03-18 07:05:12.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.204 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.2 V. 17-03-18 07:05:12.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35596 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35596 (-168.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35586 (-168.1 uncal um), Max = 35602 (-168.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um) 17-03-18 07:05:12.204 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35596, posNoise = 6, negNoise = 10 17-03-18 07:05:12.204 -07 000000610 INF: Z Motor: After move to -0.168991, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:12.204 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 104 ms (allowed 150 ms), total time = 1554 ms 17-03-18 07:05:12.204 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:12.254 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms 17-03-18 07:05:12.254 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:12.254 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.168999607409258. ---------- 17-03-18 07:05:12.254 -07 000000610 INF: Cycle 157 Tile 11 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:12.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36739, sync = True, waitForSettling = True) 17-03-18 07:05:12.254 -07 000000610 INF: Z Motor: Moving to -0.168180 mm, started at -0.169000 mm, distance = 0.82 um 17-03-18 07:05:12.254 -07 000000610 INF: FPGA: Xmit ZDACW 36739\n [Z Motor] 17-03-18 07:05:12.254 -07 000000625 INF: FPGA: Recv ZDACW 17-03-18 07:05:12.264 -07 000000610 INF: FPGA: 'ZDACW 36739' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 07:05:12.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:12.264 -07 000000606 INF: FPGA: Recv ZDACR 36739 17-03-18 07:05:12.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:12.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.424 -07 000000591 INF: FPGA: Recv ZSGSRD 35471 17-03-18 07:05:12.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:12.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.434 -07 000000437 INF: FPGA: Recv ZSGSRD 35470 17-03-18 07:05:12.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.444 -07 000000625 INF: FPGA: Recv ZSGSRD 35468 17-03-18 07:05:12.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.454 -07 000000606 INF: FPGA: Recv ZSGSRD 35467 17-03-18 07:05:12.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.464 -07 000000608 INF: FPGA: Recv ZSGSRD 35474 17-03-18 07:05:12.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.474 -07 000000437 INF: FPGA: Recv ZSGSRD 35465 17-03-18 07:05:12.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.484 -07 000000606 INF: FPGA: Recv ZSGSRD 35473 17-03-18 07:05:12.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.494 -07 000000474 INF: FPGA: Recv ZSGSRD 35474 17-03-18 07:05:12.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.504 -07 000000608 INF: FPGA: Recv ZSGSRD 35469 17-03-18 07:05:12.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:12.514 -07 000000591 INF: FPGA: Recv ZSGSRD 35467 17-03-18 07:05:12.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:12.524 -07 000000474 INF: FPGA: Recv ZPIEZORD 31237 17-03-18 07:05:12.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:12.534 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.3 V. 17-03-18 07:05:12.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35470 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35470 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35465 (-167.3 uncal um), Max = 35474 (-167.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 07:05:12.534 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35470, posNoise = 4, negNoise = 5 17-03-18 07:05:12.534 -07 000000610 INF: Z Motor: After move to -0.168180, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:12.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms) 17-03-18 07:05:12.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:12.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:12.534 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:12.534 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:12.534 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:12.534 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:12.534 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:12.534 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:12.534 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:05:12.534 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:12.534 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms. 17-03-18 07:05:12.534 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:12.544 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 07:05:12.544 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:05:12.544 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:12.544 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:12.554 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 07:05:12.554 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 25 ms. 17-03-18 07:05:12.554 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 07:05:12.554 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 25 ms. 17-03-18 07:05:12.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36916 150\n [Camera] 17-03-18 07:05:12.764 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:05:13.234 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668 17-03-18 07:05:13.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668 17-03-18 07:05:13.234 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:13.234 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:13.234 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start. 17-03-18 07:05:13.234 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668 17-03-18 07:05:13.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668 17-03-18 07:05:13.244 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:13.244 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:13.244 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start. 17-03-18 07:05:13.424 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36916 859 17-03-18 07:05:13.574 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:05:13.614 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 374 ms. 17-03-18 07:05:13.614 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms. 17-03-18 07:05:13.614 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:13.614 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms. 17-03-18 07:05:13.614 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms. 17-03-18 07:05:13.614 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:13.624 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:13.624 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:05:13.624 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 07:05:13.624 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-18 07:05:13.814 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1238 17-03-18 07:05:13.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1238 17-03-18 07:05:13.814 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:13.814 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:13.814 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-18 07:05:13.814 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1238 17-03-18 07:05:13.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1238 17-03-18 07:05:13.814 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:13.814 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:13.814 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-18 07:05:13.994 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1429 17-03-18 07:05:13.994 -07 000000430 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:13.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36916 150' command took 2 ms to send, 1428 ms to get response, and 1436 ms overall 17-03-18 07:05:14.004 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.168834 17-03-18 07:05:14.004 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16883 mm 17-03-18 07:05:14.004 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:14.004 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True) 17-03-18 07:05:14.004 -07 000000430 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm 17-03-18 07:05:14.004 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:14.004 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 36882, sync = True, waitForSettling = False) 17-03-18 07:05:14.004 -07 000000561 INF: Z Motor: Moving to -0.168835 mm, started at -0.168190 mm, distance = -0.64 um 17-03-18 07:05:14.014 -07 000000561 INF: FPGA: Xmit ZDACW 36882\n [Z Motor] 17-03-18 07:05:14.194 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms. 17-03-18 07:05:14.194 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms. 17-03-18 07:05:14.194 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:14.194 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms. 17-03-18 07:05:14.194 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 07:05:14.194 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:14.204 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 07:05:14.204 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 07:05:14.204 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-18 07:05:14.214 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 07:05:14.214 -07 000000625 INF: FPGA: Recv YRDPOS 139681 17-03-18 07:05:14.214 -07 000000625 INF: FPGA: Recv ZDACW 17-03-18 07:05:14.214 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 208 ms to get response, and 214 ms overall 17-03-18 07:05:14.214 -07 000000561 INF: FPGA: 'ZDACW 36882' command took 0 ms to send, 198 ms to get response, and 214 ms overall 17-03-18 07:05:14.214 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:14.344 -07 000000430 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:14.344 -07 000000430 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:05:14.344 -07 000000430 INF: Y Motor: Moving 1342 steps-18 17-03-18 07:05:14.344 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.000345, 17-03-18 07:05:14.344 -07 000000569 INF: FPGA: Recv ZDACR 36882 17-03-18 07:05:14.354 -07 000000561 INF: FPGA: 'ZDACR' command took 126 ms to send, 0 ms to get response, and 131 ms overall 17-03-18 07:05:14.354 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:05:14.354 -07 000000561 INF: Z Motor: MoveAbsStepped took 346 ms (did NOT wait for settling yet)) 17-03-18 07:05:14.724 -07 000000561 INF: FPGA: Recv YMVTILE 17-03-18 07:05:14.724 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall 17-03-18 07:05:14.784 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:14.784 -07 000000569 INF: FPGA: Recv YRDPOS 141365 17-03-18 07:05:14.794 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:05:14.794 -07 000000430 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:14.794 -07 000000430 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm) 17-03-18 07:05:14.794 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.839 mm, average velocity = 2.196 mm/sec 17-03-18 07:05:15.744 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:15.744 -07 000000561 INF: FPGA: Recv YRDPOS 141365 17-03-18 07:05:15.754 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:15.754 -07 000000430 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:15.784 -07 000000430 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:15.784 -07 000000430 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:05:15.784 -07 000000430 INF: Y Motor: Moved to 69.0259 after 1780 ms (table move) 17-03-18 07:05:15.784 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168835 mm (DAC = 36882) 17-03-18 07:05:15.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:15.794 -07 000000625 INF: FPGA: Recv ZSGSRD 35571 17-03-18 07:05:15.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 07:05:15.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:15.794 -07 000000430 INF: FPGA: Recv ZSGSRD 35574 17-03-18 07:05:15.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:15.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:15.804 -07 000000437 INF: FPGA: Recv ZSGSRD 35569 17-03-18 07:05:15.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:15.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:15.814 -07 000000626 INF: FPGA: Recv ZSGSRD 35569 17-03-18 07:05:15.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:15.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:15.824 -07 000000561 INF: FPGA: Recv ZSGSRD 35574 17-03-18 07:05:15.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:15.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:15.834 -07 000000437 INF: FPGA: Recv ZSGSRD 35567 17-03-18 07:05:15.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:15.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:15.844 -07 000000625 INF: FPGA: Recv ZSGSRD 35578 17-03-18 07:05:15.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:15.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:15.854 -07 000000626 INF: FPGA: Recv ZSGSRD 35577 17-03-18 07:05:15.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:15.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:15.864 -07 000000569 INF: FPGA: Recv ZSGSRD 35567 17-03-18 07:05:15.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:15.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:15.874 -07 000000430 INF: FPGA: Recv ZSGSRD 35571 17-03-18 07:05:15.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:15.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:15.884 -07 000000581 INF: FPGA: Recv ZPIEZORD 31394 17-03-18 07:05:15.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:15.894 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.2 V. 17-03-18 07:05:15.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35572 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35571 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35567 (-167.9 uncal um), Max = 35578 (-168.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 07:05:15.894 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35572, posNoise = 6, negNoise = 5 17-03-18 07:05:15.894 -07 000000610 INF: Z Motor: After move to -0.168835, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:15.894 -07 000000610 INF: Z Motor: Settle wait time = 1783 ms, measure time = 103 ms (allowed 150 ms), total time = 1886 ms 17-03-18 07:05:15.894 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:15.944 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1939 ms 17-03-18 07:05:15.944 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:15.944 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.168845426317856. ---------- 17-03-18 07:05:15.944 -07 000000610 INF: Cycle 157 Tile 12 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:15.944 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36705, sync = True, waitForSettling = True) 17-03-18 07:05:15.944 -07 000000610 INF: Z Motor: Moving to -0.168025 mm, started at -0.168845 mm, distance = 0.82 um 17-03-18 07:05:15.944 -07 000000610 INF: FPGA: Xmit ZDACW 36705\n [Z Motor] 17-03-18 07:05:15.944 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 07:05:15.954 -07 000000610 INF: FPGA: 'ZDACW 36705' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:05:15.954 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:15.954 -07 000000437 INF: FPGA: Recv ZDACR 36705 17-03-18 07:05:15.964 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:15.964 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:16.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:16.114 -07 000000626 INF: FPGA: Recv ZSGSRD 35445 17-03-18 07:05:16.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:16.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:16.124 -07 000000437 INF: FPGA: Recv ZSGSRD 35445 17-03-18 07:05:16.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 07:05:16.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:16.134 -07 000000569 INF: FPGA: Recv ZSGSRD 35442 17-03-18 07:05:16.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:05:16.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:16.144 -07 000000625 INF: FPGA: Recv ZSGSRD 35448 17-03-18 07:05:16.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:16.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:16.154 -07 000000561 INF: FPGA: Recv ZSGSRD 35444 17-03-18 07:05:16.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:16.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:16.164 -07 000000430 INF: FPGA: Recv ZSGSRD 35452 17-03-18 07:05:16.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:16.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:16.174 -07 000000561 INF: FPGA: Recv ZSGSRD 35446 17-03-18 07:05:16.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:16.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:16.184 -07 000000569 INF: FPGA: Recv ZSGSRD 35441 17-03-18 07:05:16.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:16.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:16.194 -07 000000581 INF: FPGA: Recv ZSGSRD 35446 17-03-18 07:05:16.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:16.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:16.204 -07 000000430 INF: FPGA: Recv ZSGSRD 35444 17-03-18 07:05:16.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:16.214 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:16.214 -07 000000626 INF: FPGA: Recv ZPIEZORD 31239 17-03-18 07:05:16.224 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:16.224 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.3 V. 17-03-18 07:05:16.224 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35445 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35445 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35441 (-167.1 uncal um), Max = 35452 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 07:05:16.224 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35445, posNoise = 7, negNoise = 4 17-03-18 07:05:16.224 -07 000000610 INF: Z Motor: After move to -0.168025, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:16.224 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms) 17-03-18 07:05:16.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:16.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:16.224 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:16.224 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:16.224 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:16.224 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:16.224 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:16.224 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:16.224 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:05:16.224 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:16.224 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 07:05:16.224 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:16.234 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 07:05:16.234 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:16.234 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:05:16.234 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:16.244 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms. 17-03-18 07:05:16.244 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms. 17-03-18 07:05:16.244 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms. 17-03-18 07:05:16.244 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-18 07:05:16.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36882 150\n [Camera] 17-03-18 07:05:16.454 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:05:16.924 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:05:16.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:05:16.924 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:05:16.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:05:16.924 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:16.934 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:05:16.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:05:16.934 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:16.934 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:16.934 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-18 07:05:16.934 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:16.934 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 07:05:17.124 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36882 859 17-03-18 07:05:17.264 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:05:17.314 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 381 ms. 17-03-18 07:05:17.314 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-18 07:05:17.314 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:17.314 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms. 17-03-18 07:05:17.314 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms. 17-03-18 07:05:17.314 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:17.324 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:05:17.324 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-18 07:05:17.324 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:05:17.324 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 07:05:17.494 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:05:17.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:05:17.494 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:17.504 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:05:17.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:05:17.504 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:17.504 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:17.504 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-18 07:05:17.504 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:17.504 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-18 07:05:17.684 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:05:17.694 -07 000000569 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:17.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36882 150' command took 2 ms to send, 1430 ms to get response, and 1437 ms overall 17-03-18 07:05:17.694 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168248 17-03-18 07:05:17.694 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16825 mm 17-03-18 07:05:17.694 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:17.694 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True) 17-03-18 07:05:17.694 -07 000000581 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm 17-03-18 07:05:17.694 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 36754, sync = True, waitForSettling = False) 17-03-18 07:05:17.694 -07 000000569 INF: Z Motor: Moving to -0.168249 mm, started at -0.168030 mm, distance = -0.22 um 17-03-18 07:05:17.694 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:17.704 -07 000000569 INF: FPGA: Xmit ZDACW 36754\n [Z Motor] 17-03-18 07:05:17.704 -07 000000561 INF: FPGA: Recv YRDPOS 141365 17-03-18 07:05:17.704 -07 000000581 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:05:17.704 -07 000000581 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:17.704 -07 000000581 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:05:17.704 -07 000000581 INF: Y Motor: Moving 1355 steps-34 17-03-18 07:05:17.704 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 07:05:17.714 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:05:17.714 -07 000000569 INF: FPGA: 'ZDACW 36754' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-18 07:05:17.724 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:17.724 -07 000000625 INF: FPGA: Recv ZDACR 36754 17-03-18 07:05:17.734 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:05:17.734 -07 000000569 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet)) 17-03-18 07:05:17.884 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms. 17-03-18 07:05:17.884 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms. 17-03-18 07:05:17.884 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:17.884 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 378 ms. 17-03-18 07:05:17.884 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms. 17-03-18 07:05:17.884 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:17.884 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:17.884 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:17.884 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 07:05:17.894 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-18 07:05:18.084 -07 000000561 INF: FPGA: Recv YMVTILE 17-03-18 07:05:18.084 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 07:05:18.144 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:18.144 -07 000000626 INF: FPGA: Recv YRDPOS 143077 17-03-18 07:05:18.154 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:05:18.154 -07 000000581 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:18.154 -07 000000581 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm) 17-03-18 07:05:18.154 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.847 mm, average velocity = 2.188 mm/sec 17-03-18 07:05:19.104 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:19.104 -07 000000608 INF: FPGA: Recv YRDPOS 143077 17-03-18 07:05:19.114 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:19.114 -07 000000581 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:19.144 -07 000000581 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:19.144 -07 000000581 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:05:19.144 -07 000000581 INF: Y Motor: Moved to 69.8618 after 1446 ms (table move) 17-03-18 07:05:19.144 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168249 mm (DAC = 36754) 17-03-18 07:05:19.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.144 -07 000000581 INF: FPGA: Recv ZSGSRD 35481 17-03-18 07:05:19.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:05:19.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.154 -07 000000437 INF: FPGA: Recv ZSGSRD 35481 17-03-18 07:05:19.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.164 -07 000000437 INF: FPGA: Recv ZSGSRD 35481 17-03-18 07:05:19.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.174 -07 000000437 INF: FPGA: Recv ZSGSRD 35480 17-03-18 07:05:19.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.184 -07 000000625 INF: FPGA: Recv ZSGSRD 35478 17-03-18 07:05:19.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.194 -07 000000625 INF: FPGA: Recv ZSGSRD 35479 17-03-18 07:05:19.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.204 -07 000000625 INF: FPGA: Recv ZSGSRD 35482 17-03-18 07:05:19.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.214 -07 000000581 INF: FPGA: Recv ZSGSRD 35484 17-03-18 07:05:19.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.224 -07 000000437 INF: FPGA: Recv ZSGSRD 35480 17-03-18 07:05:19.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.234 -07 000000581 INF: FPGA: Recv ZSGSRD 35476 17-03-18 07:05:19.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:19.244 -07 000000625 INF: FPGA: Recv ZPIEZORD 31241 17-03-18 07:05:19.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.254 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.608 V. Piezo Error = -9.3 V. 17-03-18 07:05:19.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35480 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35480 (-167.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35476 (-167.4 uncal um), Max = 35484 (-167.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 07:05:19.254 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35480, posNoise = 4, negNoise = 4 17-03-18 07:05:19.254 -07 000000610 INF: Z Motor: After move to -0.168249, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:19.254 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 106 ms (allowed 150 ms), total time = 1554 ms 17-03-18 07:05:19.254 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:19.304 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms 17-03-18 07:05:19.304 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:19.304 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.168254398800814. ---------- 17-03-18 07:05:19.304 -07 000000610 INF: Cycle 157 Tile 13 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:19.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36577, sync = True, waitForSettling = True) 17-03-18 07:05:19.304 -07 000000610 INF: Z Motor: Moving to -0.167439 mm, started at -0.168254 mm, distance = 0.82 um 17-03-18 07:05:19.304 -07 000000610 INF: FPGA: Xmit ZDACW 36577\n [Z Motor] 17-03-18 07:05:19.304 -07 000000625 INF: FPGA: Recv ZDACW 17-03-18 07:05:19.314 -07 000000610 INF: FPGA: 'ZDACW 36577' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:05:19.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:19.314 -07 000000581 INF: FPGA: Recv ZDACR 36577 17-03-18 07:05:19.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:19.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.474 -07 000000625 INF: FPGA: Recv ZSGSRD 35353 17-03-18 07:05:19.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:19.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.484 -07 000000625 INF: FPGA: Recv ZSGSRD 35359 17-03-18 07:05:19.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.494 -07 000000625 INF: FPGA: Recv ZSGSRD 35357 17-03-18 07:05:19.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.504 -07 000000625 INF: FPGA: Recv ZSGSRD 35347 17-03-18 07:05:19.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.514 -07 000000581 INF: FPGA: Recv ZSGSRD 35354 17-03-18 07:05:19.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.524 -07 000000625 INF: FPGA: Recv ZSGSRD 35353 17-03-18 07:05:19.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.534 -07 000000625 INF: FPGA: Recv ZSGSRD 35351 17-03-18 07:05:19.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.544 -07 000000437 INF: FPGA: Recv ZSGSRD 35350 17-03-18 07:05:19.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.554 -07 000000437 INF: FPGA: Recv ZSGSRD 35356 17-03-18 07:05:19.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:19.564 -07 000000625 INF: FPGA: Recv ZSGSRD 35356 17-03-18 07:05:19.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:19.574 -07 000000625 INF: FPGA: Recv ZPIEZORD 31061 17-03-18 07:05:19.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:19.584 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.581 V. Piezo Error = -9.5 V. 17-03-18 07:05:19.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35354 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35354 (-166.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35347 (-166.5 uncal um), Max = 35359 (-166.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:05:19.584 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35354, posNoise = 5, negNoise = 7 17-03-18 07:05:19.584 -07 000000610 INF: Z Motor: After move to -0.167439, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:19.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 07:05:19.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:19.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:19.584 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:19.584 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:19.584 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:19.584 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:19.584 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:19.584 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:19.584 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:05:19.584 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:19.584 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:05:19.584 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:19.594 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:05:19.594 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:19.594 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:05:19.594 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:19.604 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 07:05:19.604 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 07:05:19.604 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 07:05:19.604 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:05:19.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36754 150\n [Camera] 17-03-18 07:05:19.724 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.0344, 17-03-18 07:05:19.804 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:05:20.284 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 669 17-03-18 07:05:20.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 669 17-03-18 07:05:20.284 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:20.284 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:20.284 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start. 17-03-18 07:05:20.294 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 669 17-03-18 07:05:20.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 669 17-03-18 07:05:20.294 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:20.414 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:20.414 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:05:20.474 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36754 859 17-03-18 07:05:20.624 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:05:20.664 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 377 ms. 17-03-18 07:05:20.664 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms. 17-03-18 07:05:20.664 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:20.664 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:20.664 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-18 07:05:20.784 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 368 ms. 17-03-18 07:05:20.784 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms. 17-03-18 07:05:20.784 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:20.784 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:20.794 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms. 17-03-18 07:05:20.854 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:05:20.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:05:20.854 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:20.854 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:05:20.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:05:20.854 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:20.854 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:20.864 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 07:05:20.864 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:20.864 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-18 07:05:21.044 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1429 17-03-18 07:05:21.044 -07 000000591 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:21.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36754 150' command took 2 ms to send, 1426 ms to get response, and 1436 ms overall 17-03-18 07:05:21.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 07:05:21.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86181640625, Z-Position -0.167444948070952. ------ 17-03-18 07:05:21.054 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:05:21.054 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17378 mm 17-03-18 07:05:21.054 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:21.054 -07 000000606 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:05:21.054 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37962, sync = True, waitForSettling = False) 17-03-18 07:05:21.054 -07 000000626 INF: Z Motor: Moving to -0.173779 mm, started at -0.167445 mm, distance = -6.33 um 17-03-18 07:05:21.054 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True) 17-03-18 07:05:21.054 -07 000000437 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm 17-03-18 07:05:21.064 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:05:21.064 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:21.064 -07 000000591 INF: FPGA: Recv YRDPOS 143077 17-03-18 07:05:21.074 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 07:05:21.074 -07 000000437 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:21.074 -07 000000437 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:05:21.074 -07 000000437 INF: Y Motor: Moving 1345 steps-22 17-03-18 07:05:21.074 -07 000000626 INF: FPGA: Xmit ZDACW 37962\n [Z Motor] 17-03-18 07:05:21.074 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 07:05:21.084 -07 000000581 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 07:05:21.084 -07 000000626 INF: FPGA: 'ZDACW 37962' command took 0 ms to send, 0 ms to get response, and 21 ms overall 17-03-18 07:05:21.094 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:05:21.104 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:21.104 -07 000000608 INF: FPGA: Recv ZDACR 37962 17-03-18 07:05:21.114 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 07:05:21.114 -07 000000626 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet)) 17-03-18 07:05:21.244 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 377 ms. 17-03-18 07:05:21.244 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms. 17-03-18 07:05:21.244 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:21.244 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms. 17-03-18 07:05:21.244 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms. 17-03-18 07:05:21.244 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:21.244 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:21.244 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:21.244 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 07:05:21.254 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 07:05:21.284 -07 000000606 INF: FPGA: Recv FOCMRRFOC 17-03-18 07:05:21.284 -07 000000581 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall 17-03-18 07:05:21.464 -07 000000608 INF: FPGA: Recv YMVTILE 17-03-18 07:05:21.464 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:05:21.524 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:21.524 -07 000000606 INF: FPGA: Recv YRDPOS 144767 17-03-18 07:05:21.534 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:21.534 -07 000000437 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:21.534 -07 000000437 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm) 17-03-18 07:05:21.534 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.113 mm/sec 17-03-18 07:05:21.924 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:05:21.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:05:22.484 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:22.484 -07 000000474 INF: FPGA: Recv YRDPOS 144767 17-03-18 07:05:22.494 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:22.494 -07 000000437 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:22.524 -07 000000437 INF: Y Motor: After move to 70.702606, error = -0.015594, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:22.524 -07 000000437 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:05:22.524 -07 000000437 INF: Y Motor: Moved to 70.6870 after 1464 ms (table move) 17-03-18 07:05:22.524 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173779 mm (DAC = 37962) 17-03-18 07:05:22.524 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:22.524 -07 000000606 INF: FPGA: Recv ZSGSRD 36346 17-03-18 07:05:22.534 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:05:22.534 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:22.534 -07 000000608 INF: FPGA: Recv ZSGSRD 36333 17-03-18 07:05:22.544 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:22.544 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:22.544 -07 000000437 INF: FPGA: Recv ZSGSRD 36338 17-03-18 07:05:22.554 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:22.554 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:22.554 -07 000000606 INF: FPGA: Recv ZSGSRD 36343 17-03-18 07:05:22.564 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:22.564 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:22.564 -07 000000606 INF: FPGA: Recv ZSGSRD 36336 17-03-18 07:05:22.574 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:22.574 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:22.574 -07 000000437 INF: FPGA: Recv ZSGSRD 36341 17-03-18 07:05:22.584 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:22.584 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:22.584 -07 000000437 INF: FPGA: Recv ZSGSRD 36332 17-03-18 07:05:22.594 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:22.594 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:22.594 -07 000000606 INF: FPGA: Recv ZSGSRD 36346 17-03-18 07:05:22.604 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:22.604 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:22.604 -07 000000437 INF: FPGA: Recv ZSGSRD 36342 17-03-18 07:05:22.614 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:22.614 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:22.614 -07 000000437 INF: FPGA: Recv ZSGSRD 36337 17-03-18 07:05:22.624 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:22.624 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:22.624 -07 000000606 INF: FPGA: Recv ZPIEZORD 32412 17-03-18 07:05:22.634 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:22.634 -07 000000512 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.793 V. Piezo Error = -8.7 V. 17-03-18 07:05:22.634 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36339 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36340 (-172.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36332 (-172.8 uncal um), Max = 36346 (-172.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:05:22.634 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36339, posNoise = 7, negNoise = 7 17-03-18 07:05:22.634 -07 000000512 INF: Z Motor: After move to -0.173779, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:22.634 -07 000000512 INF: Z Motor: Settle wait time = 1467 ms, measure time = 105 ms (allowed 150 ms), total time = 1572 ms 17-03-18 07:05:22.634 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:22.684 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms 17-03-18 07:05:22.684 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:22.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:22.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:22.684 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:22.684 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:22.684 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 07:05:22.684 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:22.684 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 07:05:22.684 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 07:05:22.694 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 07:05:22.694 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 07:05:22.704 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-18 07:05:22.704 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-18 07:05:22.704 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 07:05:22.744 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 07:05:23.044 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 07:05:23.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 07:05:23.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 07:05:23.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start. 17-03-18 07:05:23.084 -07 000000606 INF: FPGA: Recv @CAMSNAP 380 17-03-18 07:05:23.084 -07 000000512 INF: FPGA: Recv CAMSNAP 17-03-18 07:05:23.084 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall 17-03-18 07:05:23.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 115 ms. 17-03-18 07:05:23.164 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:23.164 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 07:05:23.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-18 07:05:23.284 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:05:23.284 -07 000000606 INF: Autofocus start 17-03-18 07:05:23.284 -07 000000606 INF: MeasureProfile start 17-03-18 07:05:23.284 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:05:23.294 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:05:23.294 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 07:05:23.294 -07 000000606 INF: MeasureProfile done 17-03-18 07:05:23.294 -07 000000606 INF: X=80 Z correction [um]=0.337546 17-03-18 07:05:23.294 -07 000000606 INF: Autofocus finished 17-03-18 07:05:23.494 -07 000000606 INF: FPGA: Recv FOCMRRIMG 17-03-18 07:05:23.494 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 07:05:23.494 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68701171875, Z-position -0.173772797030586. ---------- 17-03-18 07:05:23.494 -07 000000610 INF: Cycle 157 Tile 14 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:23.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36549, sync = True, waitForSettling = True) 17-03-18 07:05:23.504 -07 000000610 INF: Z Motor: Moving to -0.167311 mm, started at -0.173773 mm, distance = 6.46 um 17-03-18 07:05:23.504 -07 000000610 INF: FPGA: Xmit ZDACW 36549\n [Z Motor] 17-03-18 07:05:23.504 -07 000000437 INF: FPGA: Recv ZDACW 17-03-18 07:05:23.514 -07 000000610 INF: FPGA: 'ZDACW 36549' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:23.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:23.514 -07 000000437 INF: FPGA: Recv ZDACR 36549 17-03-18 07:05:23.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:23.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:23.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:23.674 -07 000000437 INF: FPGA: Recv ZSGSRD 35335 17-03-18 07:05:23.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:23.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:23.684 -07 000000606 INF: FPGA: Recv ZSGSRD 35333 17-03-18 07:05:23.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:23.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:23.694 -07 000000606 INF: FPGA: Recv ZSGSRD 35341 17-03-18 07:05:23.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:23.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:23.704 -07 000000512 INF: FPGA: Recv ZSGSRD 35331 17-03-18 07:05:23.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:23.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:23.714 -07 000000569 INF: FPGA: Recv ZSGSRD 35336 17-03-18 07:05:23.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:23.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:23.724 -07 000000606 INF: FPGA: Recv ZSGSRD 35338 17-03-18 07:05:23.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:23.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:23.734 -07 000000437 INF: FPGA: Recv ZSGSRD 35334 17-03-18 07:05:23.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:23.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:23.744 -07 000000437 INF: FPGA: Recv ZSGSRD 35333 17-03-18 07:05:23.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:23.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:23.754 -07 000000437 INF: FPGA: Recv ZSGSRD 35336 17-03-18 07:05:23.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:23.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:23.764 -07 000000512 INF: FPGA: Recv ZSGSRD 35330 17-03-18 07:05:23.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:23.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:23.774 -07 000000512 INF: FPGA: Recv ZPIEZORD 31063 17-03-18 07:05:23.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:23.784 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.577 V. Piezo Error = -9.4 V. 17-03-18 07:05:23.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35335 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35334 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35330 (-166.4 uncal um), Max = 35341 (-166.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 07:05:23.784 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35335, posNoise = 6, negNoise = 5 17-03-18 07:05:23.784 -07 000000610 INF: Z Motor: After move to -0.167311, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:23.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 07:05:23.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:23.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:23.784 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:23.784 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:23.784 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:23.784 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:23.784 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:23.784 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:23.784 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:05:23.784 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:23.784 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:05:23.784 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:23.794 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 07:05:23.794 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:23.794 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:05:23.794 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:23.804 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-18 07:05:23.804 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 07:05:23.804 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 07:05:23.804 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 07:05:23.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36725 150\n [Camera] 17-03-18 07:05:24.004 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:05:24.474 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:05:24.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:05:24.474 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:24.474 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:24.474 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-18 07:05:24.484 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:05:24.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:05:24.484 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:24.484 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:24.484 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start. 17-03-18 07:05:24.674 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36725 859 17-03-18 07:05:24.824 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:05:24.864 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms. 17-03-18 07:05:24.864 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-18 07:05:24.864 -07 000000591 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:24.864 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms. 17-03-18 07:05:24.864 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-18 07:05:24.864 -07 000000437 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:24.874 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 07:05:24.874 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-18 07:05:24.874 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 07:05:24.884 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 07:05:25.044 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:05:25.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:05:25.054 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:25.054 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:05:25.054 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:25.054 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start. 17-03-18 07:05:25.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:05:25.054 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:25.054 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:25.054 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start. 17-03-18 07:05:25.084 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.039839, 17-03-18 07:05:25.244 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:05:25.244 -07 000000437 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:25.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36725 150' command took 2 ms to send, 1430 ms to get response, and 1437 ms overall 17-03-18 07:05:25.244 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.168164 17-03-18 07:05:25.244 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16816 mm 17-03-18 07:05:25.244 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:25.244 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True) 17-03-18 07:05:25.244 -07 000000561 INF: Y Motor: Moving to 71.5326 mm, started at 70.6870 mm, delta = 0.8456 mm 17-03-18 07:05:25.244 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 36735, sync = True, waitForSettling = False) 17-03-18 07:05:25.244 -07 000000625 INF: Z Motor: Moving to -0.168162 mm, started at -0.167323 mm, distance = -0.84 um 17-03-18 07:05:25.244 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:25.244 -07 000000569 INF: FPGA: Recv YRDPOS 144768 17-03-18 07:05:25.254 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:05:25.254 -07 000000561 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:25.254 -07 000000625 INF: FPGA: Xmit ZDACW 36735\n [Z Motor] 17-03-18 07:05:25.254 -07 000000512 INF: FPGA: Recv ZDACW 17-03-18 07:05:25.254 -07 000000561 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:05:25.254 -07 000000561 INF: Y Motor: Moving 1352 steps-32 17-03-18 07:05:25.264 -07 000000625 INF: FPGA: 'ZDACW 36735' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-18 07:05:25.264 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:25.264 -07 000000591 INF: FPGA: Recv ZDACR 36735 17-03-18 07:05:25.274 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:05:25.274 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:25.274 -07 000000625 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet)) 17-03-18 07:05:25.454 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms. 17-03-18 07:05:25.454 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-18 07:05:25.454 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:25.454 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms. 17-03-18 07:05:25.454 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 07:05:25.454 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:25.454 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:05:25.454 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-18 07:05:25.464 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:25.464 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-18 07:05:25.644 -07 000000625 INF: FPGA: Recv YMVTILE 17-03-18 07:05:25.644 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall 17-03-18 07:05:25.704 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:25.704 -07 000000625 INF: FPGA: Recv YRDPOS 146468 17-03-18 07:05:25.714 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:05:25.714 -07 000000561 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:25.714 -07 000000561 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-18 07:05:25.714 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.846 mm, average velocity = 2.152 mm/sec 17-03-18 07:05:26.664 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:26.664 -07 000000606 INF: FPGA: Recv YRDPOS 146468 17-03-18 07:05:26.674 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:26.674 -07 000000561 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:26.704 -07 000000561 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:26.704 -07 000000561 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:05:26.704 -07 000000561 INF: Y Motor: Moved to 71.5176 after 1458 ms (table move) 17-03-18 07:05:26.704 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168162 mm (DAC = 36735) 17-03-18 07:05:26.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:26.704 -07 000000437 INF: FPGA: Recv ZSGSRD 35474 17-03-18 07:05:26.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:05:26.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:26.714 -07 000000512 INF: FPGA: Recv ZSGSRD 35467 17-03-18 07:05:26.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:26.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:26.724 -07 000000569 INF: FPGA: Recv ZSGSRD 35474 17-03-18 07:05:26.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:26.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:26.734 -07 000000569 INF: FPGA: Recv ZSGSRD 35457 17-03-18 07:05:26.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:05:26.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:26.744 -07 000000569 INF: FPGA: Recv ZSGSRD 35462 17-03-18 07:05:26.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:26.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:26.754 -07 000000569 INF: FPGA: Recv ZSGSRD 35470 17-03-18 07:05:26.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:26.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:26.764 -07 000000437 INF: FPGA: Recv ZSGSRD 35464 17-03-18 07:05:26.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:26.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:26.774 -07 000000569 INF: FPGA: Recv ZSGSRD 35468 17-03-18 07:05:26.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:26.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:26.784 -07 000000512 INF: FPGA: Recv ZSGSRD 35472 17-03-18 07:05:26.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:26.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:26.794 -07 000000512 INF: FPGA: Recv ZSGSRD 35469 17-03-18 07:05:26.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:26.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:26.804 -07 000000512 INF: FPGA: Recv ZPIEZORD 31259 17-03-18 07:05:26.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:26.814 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.605 V. Piezo Error = -9.3 V. 17-03-18 07:05:26.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35468 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35468 (-167.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35457 (-167.2 uncal um), Max = 35474 (-167.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um) 17-03-18 07:05:26.814 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35468, posNoise = 6, negNoise = 11 17-03-18 07:05:26.814 -07 000000610 INF: Z Motor: After move to -0.168162, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:26.814 -07 000000610 INF: Z Motor: Settle wait time = 1460 ms, measure time = 105 ms (allowed 150 ms), total time = 1565 ms 17-03-18 07:05:26.814 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:26.864 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms 17-03-18 07:05:26.864 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:26.864 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.168177308255113. ---------- 17-03-18 07:05:26.864 -07 000000610 INF: Cycle 157 Tile 15 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:26.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36559, sync = True, waitForSettling = True) 17-03-18 07:05:26.864 -07 000000610 INF: Z Motor: Moving to -0.167356 mm, started at -0.168177 mm, distance = 0.82 um 17-03-18 07:05:26.864 -07 000000610 INF: FPGA: Xmit ZDACW 36559\n [Z Motor] 17-03-18 07:05:26.864 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 07:05:26.874 -07 000000610 INF: FPGA: 'ZDACW 36559' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:05:26.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:26.874 -07 000000512 INF: FPGA: Recv ZDACR 36559 17-03-18 07:05:26.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:26.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:26.924 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:05:26.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:05:27.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:27.034 -07 000000512 INF: FPGA: Recv ZSGSRD 35351 17-03-18 07:05:27.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:27.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:27.044 -07 000000512 INF: FPGA: Recv ZSGSRD 35346 17-03-18 07:05:27.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:27.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:27.054 -07 000000437 INF: FPGA: Recv ZSGSRD 35334 17-03-18 07:05:27.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:27.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:27.064 -07 000000569 INF: FPGA: Recv ZSGSRD 35341 17-03-18 07:05:27.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:27.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:27.074 -07 000000512 INF: FPGA: Recv ZSGSRD 35339 17-03-18 07:05:27.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:27.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:27.084 -07 000000437 INF: FPGA: Recv ZSGSRD 35343 17-03-18 07:05:27.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:27.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:27.094 -07 000000569 INF: FPGA: Recv ZSGSRD 35337 17-03-18 07:05:27.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:05:27.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:27.104 -07 000000437 INF: FPGA: Recv ZSGSRD 35340 17-03-18 07:05:27.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:27.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:27.114 -07 000000437 INF: FPGA: Recv ZSGSRD 35349 17-03-18 07:05:27.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:27.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:27.124 -07 000000569 INF: FPGA: Recv ZSGSRD 35348 17-03-18 07:05:27.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:27.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:27.134 -07 000000437 INF: FPGA: Recv ZPIEZORD 31118 17-03-18 07:05:27.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:27.144 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.579 V. Piezo Error = -9.3 V. 17-03-18 07:05:27.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35343 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35342 (-166.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35334 (-166.4 uncal um), Max = 35351 (-166.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-18 07:05:27.144 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35343, posNoise = 8, negNoise = 9 17-03-18 07:05:27.144 -07 000000610 INF: Z Motor: After move to -0.167356, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:27.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 07:05:27.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:27.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:27.144 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:27.144 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:27.144 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:27.144 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:27.144 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:05:27.144 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:27.154 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:27.154 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:27.154 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:05:27.154 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:27.154 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-18 07:05:27.154 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:27.154 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 07:05:27.154 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:27.164 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-18 07:05:27.164 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:05:27.174 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms. 17-03-18 07:05:27.174 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:05:27.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36735 150\n [Camera] 17-03-18 07:05:27.384 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:05:27.854 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:05:27.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:05:27.854 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:27.854 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:27.854 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-18 07:05:27.854 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:05:27.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:05:27.854 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:27.854 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:27.854 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-18 07:05:28.044 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36735 859 17-03-18 07:05:28.194 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:05:28.234 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms. 17-03-18 07:05:28.234 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms. 17-03-18 07:05:28.234 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:28.234 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms. 17-03-18 07:05:28.234 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms. 17-03-18 07:05:28.234 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:28.244 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:28.244 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-18 07:05:28.244 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:28.244 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 07:05:28.424 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:05:28.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:05:28.424 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:28.554 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:05:28.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:05:28.554 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:28.554 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:28.554 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-18 07:05:28.554 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:28.554 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-18 07:05:28.614 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1429 17-03-18 07:05:28.614 -07 000000591 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:28.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36735 150' command took 2 ms to send, 1428 ms to get response, and 1440 ms overall 17-03-18 07:05:28.624 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167749 17-03-18 07:05:28.624 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16775 mm 17-03-18 07:05:28.624 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:28.624 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True) 17-03-18 07:05:28.624 -07 000000625 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm 17-03-18 07:05:28.624 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:28.624 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 36645, sync = True, waitForSettling = False) 17-03-18 07:05:28.624 -07 000000608 INF: Z Motor: Moving to -0.167750 mm, started at -0.167374 mm, distance = -0.38 um 17-03-18 07:05:28.624 -07 000000569 INF: FPGA: Recv YRDPOS 146468 17-03-18 07:05:28.634 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:05:28.634 -07 000000625 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:28.634 -07 000000625 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:05:28.634 -07 000000625 INF: Y Motor: Moving 1352 steps-31 17-03-18 07:05:28.634 -07 000000608 INF: FPGA: Xmit ZDACW 36645\n [Z Motor] 17-03-18 07:05:28.634 -07 000000591 INF: FPGA: Recv ZDACW 17-03-18 07:05:28.644 -07 000000608 INF: FPGA: 'ZDACW 36645' command took 0 ms to send, 0 ms to get response, and 15 ms overall 17-03-18 07:05:28.644 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:05:28.654 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:28.654 -07 000000437 INF: FPGA: Recv ZDACR 36645 17-03-18 07:05:28.664 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:05:28.664 -07 000000608 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet)) 17-03-18 07:05:28.934 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 375 ms. 17-03-18 07:05:28.934 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms. 17-03-18 07:05:28.934 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:28.934 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 380 ms. 17-03-18 07:05:28.934 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms. 17-03-18 07:05:28.934 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:28.934 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:28.944 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:28.944 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms. 17-03-18 07:05:28.944 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-18 07:05:29.014 -07 000000512 INF: FPGA: Recv YMVTILE 17-03-18 07:05:29.014 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 07:05:29.074 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:29.074 -07 000000430 INF: FPGA: Recv YRDPOS 148169 17-03-18 07:05:29.084 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:29.084 -07 000000625 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:29.084 -07 000000625 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm) 17-03-18 07:05:29.084 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.178 mm/sec 17-03-18 07:05:30.034 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:30.034 -07 000000512 INF: FPGA: Recv YRDPOS 148169 17-03-18 07:05:30.044 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.044 -07 000000625 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:30.074 -07 000000625 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:30.074 -07 000000625 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:05:30.074 -07 000000625 INF: Y Motor: Moved to 72.3481 after 1449 ms (table move) 17-03-18 07:05:30.074 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167750 mm (DAC = 36645) 17-03-18 07:05:30.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.074 -07 000000611 INF: FPGA: Recv ZSGSRD 35404 17-03-18 07:05:30.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:05:30.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.084 -07 000000611 INF: FPGA: Recv ZSGSRD 35395 17-03-18 07:05:30.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.094 -07 000000625 INF: FPGA: Recv ZSGSRD 35402 17-03-18 07:05:30.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.104 -07 000000625 INF: FPGA: Recv ZSGSRD 35400 17-03-18 07:05:30.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.114 -07 000000625 INF: FPGA: Recv ZSGSRD 35402 17-03-18 07:05:30.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.134 -07 000000625 INF: FPGA: Recv ZSGSRD 35409 17-03-18 07:05:30.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:05:30.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.144 -07 000000625 INF: FPGA: Recv ZSGSRD 35406 17-03-18 07:05:30.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.154 -07 000000606 INF: FPGA: Recv ZSGSRD 35401 17-03-18 07:05:30.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.164 -07 000000569 INF: FPGA: Recv ZSGSRD 35397 17-03-18 07:05:30.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.174 -07 000000430 INF: FPGA: Recv ZSGSRD 35406 17-03-18 07:05:30.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:30.184 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:30.184 -07 000000625 INF: FPGA: Recv ZPIEZORD 31222 17-03-18 07:05:30.194 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.194 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.2 V. 17-03-18 07:05:30.194 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35402 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35402 (-166.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35395 (-166.8 uncal um), Max = 35409 (-166.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:05:30.194 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35402, posNoise = 7, negNoise = 7 17-03-18 07:05:30.194 -07 000000610 INF: Z Motor: After move to -0.167750, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:30.194 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 116 ms (allowed 150 ms), total time = 1566 ms 17-03-18 07:05:30.194 -07 000000610 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:30.234 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms 17-03-18 07:05:30.234 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:30.234 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.167753310253756. ---------- 17-03-18 07:05:30.234 -07 000000610 INF: Cycle 157 Tile 16 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:30.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36468, sync = True, waitForSettling = True) 17-03-18 07:05:30.234 -07 000000610 INF: Z Motor: Moving to -0.166940 mm, started at -0.167753 mm, distance = 0.81 um 17-03-18 07:05:30.234 -07 000000610 INF: FPGA: Xmit ZDACW 36468\n [Z Motor] 17-03-18 07:05:30.234 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 07:05:30.244 -07 000000610 INF: FPGA: 'ZDACW 36468' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:05:30.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:30.244 -07 000000606 INF: FPGA: Recv ZDACR 36468 17-03-18 07:05:30.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:30.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.404 -07 000000606 INF: FPGA: Recv ZSGSRD 35277 17-03-18 07:05:30.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:30.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.414 -07 000000606 INF: FPGA: Recv ZSGSRD 35281 17-03-18 07:05:30.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.424 -07 000000606 INF: FPGA: Recv ZSGSRD 35280 17-03-18 07:05:30.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.444 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.019446, 17-03-18 07:05:30.444 -07 000000618 INF: FPGA: Recv ZSGSRD 35280 17-03-18 07:05:30.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:05:30.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.464 -07 000000512 INF: FPGA: Recv ZSGSRD 35277 17-03-18 07:05:30.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:05:30.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.474 -07 000000512 INF: FPGA: Recv ZSGSRD 35278 17-03-18 07:05:30.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.504 -07 000000512 INF: FPGA: Recv ZSGSRD 35278 17-03-18 07:05:30.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 07:05:30.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.514 -07 000000512 INF: FPGA: Recv ZSGSRD 35274 17-03-18 07:05:30.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.534 -07 000000512 INF: FPGA: Recv ZSGSRD 35281 17-03-18 07:05:30.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:05:30.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:30.544 -07 000000512 INF: FPGA: Recv ZSGSRD 35286 17-03-18 07:05:30.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:30.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:30.554 -07 000000512 INF: FPGA: Recv ZPIEZORD 31040 17-03-18 07:05:30.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:30.564 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.565 V. Piezo Error = -9.3 V. 17-03-18 07:05:30.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35279 (-166.1 uncal um), Error = 0.8 uncal um, Median = 35279 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35274 (-166.1 uncal um), Max = 35286 (-166.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 07:05:30.564 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35279, posNoise = 7, negNoise = 5 17-03-18 07:05:30.564 -07 000000610 INF: Z Motor: After move to -0.166940, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:30.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms) 17-03-18 07:05:30.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:30.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:30.564 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:30.564 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:30.564 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:30.564 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:30.564 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:05:30.564 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:30.574 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 07:05:30.574 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:30.584 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 07:05:30.584 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:05:30.594 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:30.594 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:30.594 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 07:05:30.594 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:30.594 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 07:05:30.594 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:30.604 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms. 17-03-18 07:05:30.604 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 07:05:30.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36645 150\n [Camera] 17-03-18 07:05:30.804 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:05:31.284 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:05:31.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:05:31.284 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:31.284 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:31.284 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 07:05:31.664 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms. 17-03-18 07:05:31.664 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms. 17-03-18 07:05:31.664 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:31.664 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-18 07:05:31.664 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms. 17-03-18 07:05:31.674 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:05:31.674 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36645 859 17-03-18 07:05:31.674 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:05:31.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:05:31.674 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:31.674 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:31.674 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-18 07:05:32.054 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 371 ms. 17-03-18 07:05:32.054 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms. 17-03-18 07:05:32.054 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:32.054 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:32.054 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-18 07:05:32.074 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:05:32.074 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:05:32.074 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:05:32.074 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:05:32.074 -07 000000561 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:32.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36645 150' command took 2 ms to send, 1453 ms to get response, and 1464 ms overall 17-03-18 07:05:32.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:05:32.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:05:32.074 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:32.074 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:32.184 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:32.184 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-18 07:05:32.194 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:05:32.194 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167305 17-03-18 07:05:32.194 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16731 mm 17-03-18 07:05:32.194 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:32.194 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:32.194 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:05:32.194 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True) 17-03-18 07:05:32.194 -07 000000626 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm 17-03-18 07:05:32.194 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 36548, sync = True, waitForSettling = False) 17-03-18 07:05:32.194 -07 000000581 INF: Z Motor: Moving to -0.167306 mm, started at -0.166963 mm, distance = -0.34 um 17-03-18 07:05:32.204 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:32.204 -07 000000606 INF: FPGA: Recv YRDPOS 148169 17-03-18 07:05:32.214 -07 000000581 INF: FPGA: Xmit ZDACW 36548\n [Z Motor] 17-03-18 07:05:32.214 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-18 07:05:32.214 -07 000000626 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:32.214 -07 000000626 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:05:32.214 -07 000000626 INF: Y Motor: Moving 1351 steps-30 17-03-18 07:05:32.214 -07 000000512 INF: FPGA: Recv ZDACW 17-03-18 07:05:32.224 -07 000000581 INF: FPGA: 'ZDACW 36548' command took 0 ms to send, 0 ms to get response, and 23 ms overall 17-03-18 07:05:32.234 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:05:32.244 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:32.244 -07 000000608 INF: FPGA: Recv ZDACR 36548 17-03-18 07:05:32.254 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 07:05:32.254 -07 000000581 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet)) 17-03-18 07:05:32.574 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 381 ms. 17-03-18 07:05:32.574 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms. 17-03-18 07:05:32.574 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:32.574 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms. 17-03-18 07:05:32.574 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 501 ms. 17-03-18 07:05:32.574 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:32.584 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:32.584 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:32.584 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms. 17-03-18 07:05:32.584 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms. 17-03-18 07:05:32.604 -07 000000606 INF: FPGA: Recv YMVTILE 17-03-18 07:05:32.604 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:05:32.664 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:32.664 -07 000000606 INF: FPGA: Recv YRDPOS 149861 17-03-18 07:05:32.674 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:05:32.674 -07 000000626 INF: Y Motor: Encoder = 149861 = motor step 117078.9 = 73.1743 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:32.674 -07 000000626 INF: Y Motor: Position error before settling (table move) = -37 encoder counts (-0.018 mm) 17-03-18 07:05:32.674 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.116 mm/sec 17-03-18 07:05:33.624 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:33.624 -07 000000581 INF: FPGA: Recv YRDPOS 149862 17-03-18 07:05:33.634 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:33.634 -07 000000626 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:33.664 -07 000000626 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:33.664 -07 000000626 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 07:05:33.664 -07 000000626 INF: Y Motor: Moved to 73.1748 after 1467 ms (table move) 17-03-18 07:05:33.664 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167306 mm (DAC = 36548) 17-03-18 07:05:33.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:33.664 -07 000000512 INF: FPGA: Recv ZSGSRD 35334 17-03-18 07:05:33.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:05:33.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:33.674 -07 000000581 INF: FPGA: Recv ZSGSRD 35336 17-03-18 07:05:33.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:33.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:33.684 -07 000000512 INF: FPGA: Recv ZSGSRD 35330 17-03-18 07:05:33.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:33.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:33.694 -07 000000608 INF: FPGA: Recv ZSGSRD 35335 17-03-18 07:05:33.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:33.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:33.704 -07 000000512 INF: FPGA: Recv ZSGSRD 35339 17-03-18 07:05:33.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:33.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:33.714 -07 000000608 INF: FPGA: Recv ZSGSRD 35328 17-03-18 07:05:33.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:33.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:33.724 -07 000000591 INF: FPGA: Recv ZSGSRD 35336 17-03-18 07:05:33.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:33.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:33.734 -07 000000626 INF: FPGA: Recv ZSGSRD 35329 17-03-18 07:05:33.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:33.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:33.744 -07 000000561 INF: FPGA: Recv ZSGSRD 35335 17-03-18 07:05:33.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:33.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:33.754 -07 000000581 INF: FPGA: Recv ZSGSRD 35343 17-03-18 07:05:33.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:33.764 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:33.764 -07 000000561 INF: FPGA: Recv ZPIEZORD 31137 17-03-18 07:05:33.774 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:33.774 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.577 V. Piezo Error = -9.3 V. 17-03-18 07:05:33.774 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35334 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35335 (-166.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35328 (-166.4 uncal um), Max = 35343 (-166.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:05:33.774 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35334, posNoise = 9, negNoise = 6 17-03-18 07:05:33.774 -07 000000610 INF: Z Motor: After move to -0.167306, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:33.774 -07 000000610 INF: Z Motor: Settle wait time = 1469 ms, measure time = 105 ms (allowed 150 ms), total time = 1574 ms 17-03-18 07:05:33.774 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:33.824 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms 17-03-18 07:05:33.824 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:33.824 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.167316463828117. ---------- 17-03-18 07:05:33.824 -07 000000610 INF: Cycle 157 Tile 17 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:33.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36371, sync = True, waitForSettling = True) 17-03-18 07:05:33.824 -07 000000610 INF: Z Motor: Moving to -0.166496 mm, started at -0.167316 mm, distance = 0.82 um 17-03-18 07:05:33.824 -07 000000610 INF: FPGA: Xmit ZDACW 36371\n [Z Motor] 17-03-18 07:05:33.824 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 07:05:33.834 -07 000000610 INF: FPGA: 'ZDACW 36371' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:05:33.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:33.834 -07 000000591 INF: FPGA: Recv ZDACR 36371 17-03-18 07:05:33.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:33.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:33.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:33.994 -07 000000608 INF: FPGA: Recv ZSGSRD 35210 17-03-18 07:05:34.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:34.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:34.584 -07 000000581 INF: FPGA: Recv ZSGSRD 35208 17-03-18 07:05:34.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 570 ms to get response, and 580 ms overall 17-03-18 07:05:34.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:34.584 -07 000000561 INF: FPGA: Recv ZSGSRD 35214 17-03-18 07:05:34.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:34.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:34.594 -07 000000512 INF: FPGA: Recv ZSGSRD 35212 17-03-18 07:05:34.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:34.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:34.604 -07 000000561 INF: FPGA: Recv ZSGSRD 35204 17-03-18 07:05:34.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:34.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:34.614 -07 000000512 INF: FPGA: Recv ZSGSRD 35202 17-03-18 07:05:34.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:34.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:34.624 -07 000000606 INF: FPGA: Recv ZSGSRD 35207 17-03-18 07:05:34.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:34.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:34.634 -07 000000581 INF: FPGA: Recv ZSGSRD 35207 17-03-18 07:05:34.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:34.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:34.644 -07 000000606 INF: FPGA: Recv ZSGSRD 35212 17-03-18 07:05:34.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:34.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:34.654 -07 000000581 INF: FPGA: Recv ZSGSRD 35208 17-03-18 07:05:34.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:34.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:34.664 -07 000000606 INF: FPGA: Recv ZPIEZORD 30982 17-03-18 07:05:34.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:34.674 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.550 V. Piezo Error = -9.3 V. 17-03-18 07:05:34.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35208 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35208 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35202 (-165.6 uncal um), Max = 35214 (-165.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:05:34.674 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35208, posNoise = 6, negNoise = 6 17-03-18 07:05:34.674 -07 000000610 INF: Z Motor: After move to -0.166496, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:34.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 845 ms) 17-03-18 07:05:34.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:34.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:34.674 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:34.674 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:34.674 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:34.674 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:34.674 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:34.674 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:34.674 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 07:05:34.674 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:34.674 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 07:05:34.674 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:34.684 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 07:05:34.684 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:34.684 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 07:05:34.684 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:34.694 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 07:05:34.694 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 07:05:34.694 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 07:05:34.694 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 07:05:34.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36548 150\n [Camera] 17-03-18 07:05:34.894 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:05:35.364 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:05:35.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:05:35.364 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:35.364 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:05:35.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:05:35.374 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:35.374 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:35.374 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start. 17-03-18 07:05:35.374 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:35.374 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 07:05:35.554 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36548 859 17-03-18 07:05:35.704 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:05:35.744 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 368 ms. 17-03-18 07:05:35.744 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms. 17-03-18 07:05:35.744 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:35.744 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 373 ms. 17-03-18 07:05:35.744 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms. 17-03-18 07:05:35.744 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:35.744 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:35.744 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:35.754 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 07:05:35.754 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-18 07:05:35.854 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.99219, 17-03-18 07:05:35.934 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:05:35.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:05:35.934 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:35.944 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:05:35.944 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:35.944 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-18 07:05:35.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:05:35.944 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:35.944 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:35.944 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start. 17-03-18 07:05:36.124 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:05:36.124 -07 000000581 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:36.124 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36548 150' command took 2 ms to send, 1428 ms to get response, and 1436 ms overall 17-03-18 07:05:36.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-18 07:05:36.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.166507013098255. ------ 17-03-18 07:05:36.134 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:05:36.134 -07 000000581 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17244 mm 17-03-18 07:05:36.134 -07 000000581 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:36.134 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True) 17-03-18 07:05:36.134 -07 000000561 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm 17-03-18 07:05:36.134 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37670, sync = True, waitForSettling = False) 17-03-18 07:05:36.134 -07 000000611 INF: Z Motor: Moving to -0.172442 mm, started at -0.166507 mm, distance = -5.94 um 17-03-18 07:05:36.144 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:36.144 -07 000000437 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:05:36.144 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall 17-03-18 07:05:36.144 -07 000000437 INF: FPGA: Recv YRDPOS 149862 17-03-18 07:05:36.154 -07 000000611 INF: FPGA: Xmit ZDACW 37670\n [Z Motor] 17-03-18 07:05:36.154 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:36.154 -07 000000561 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:36.154 -07 000000561 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:05:36.154 -07 000000561 INF: Y Motor: Moving 1356 steps-37 17-03-18 07:05:36.154 -07 000000430 INF: FPGA: Recv ZDACW 17-03-18 07:05:36.164 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 07:05:36.164 -07 000000611 INF: FPGA: 'ZDACW 37670' command took 0 ms to send, 0 ms to get response, and 20 ms overall 17-03-18 07:05:36.174 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:05:36.184 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:36.184 -07 000000474 INF: FPGA: Recv ZDACR 37670 17-03-18 07:05:36.194 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 07:05:36.194 -07 000000611 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet)) 17-03-18 07:05:36.334 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 388 ms. 17-03-18 07:05:36.334 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 07:05:36.334 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:36.334 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:36.334 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 07:05:36.334 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 391 ms. 17-03-18 07:05:36.334 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-18 07:05:36.334 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:36.334 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:36.344 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 07:05:36.364 -07 000000611 INF: FPGA: Recv FOCMRRFOC 17-03-18 07:05:36.364 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall 17-03-18 07:05:36.544 -07 000000611 INF: FPGA: Recv YMVTILE 17-03-18 07:05:36.544 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:05:36.594 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:36.594 -07 000000430 INF: FPGA: Recv YRDPOS 151566 17-03-18 07:05:36.604 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:05:36.604 -07 000000561 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:36.604 -07 000000561 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm) 17-03-18 07:05:36.604 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.848 mm, average velocity = 2.136 mm/sec 17-03-18 07:05:36.924 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:05:36.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:05:37.554 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:37.554 -07 000000430 INF: FPGA: Recv YRDPOS 151566 17-03-18 07:05:37.564 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:37.564 -07 000000561 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:37.584 -07 000000561 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:37.584 -07 000000561 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:05:37.584 -07 000000561 INF: Y Motor: Moved to 74.0068 after 1448 ms (table move) 17-03-18 07:05:37.594 -07 000000581 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172442 mm (DAC = 37670) 17-03-18 07:05:37.604 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:37.604 -07 000000430 INF: FPGA: Recv ZSGSRD 36130 17-03-18 07:05:37.614 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-18 07:05:37.614 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:37.614 -07 000000611 INF: FPGA: Recv ZSGSRD 36129 17-03-18 07:05:37.624 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:37.624 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:37.624 -07 000000430 INF: FPGA: Recv ZSGSRD 36131 17-03-18 07:05:37.634 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:37.634 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:37.634 -07 000000430 INF: FPGA: Recv ZSGSRD 36128 17-03-18 07:05:37.644 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:37.644 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:37.644 -07 000000512 INF: FPGA: Recv ZSGSRD 36129 17-03-18 07:05:37.654 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:37.654 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:37.654 -07 000000512 INF: FPGA: Recv ZSGSRD 36137 17-03-18 07:05:37.664 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:37.664 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:37.664 -07 000000430 INF: FPGA: Recv ZSGSRD 36137 17-03-18 07:05:37.674 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:37.674 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:37.674 -07 000000512 INF: FPGA: Recv ZSGSRD 36137 17-03-18 07:05:37.684 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:37.684 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:37.684 -07 000000626 INF: FPGA: Recv ZSGSRD 36138 17-03-18 07:05:37.694 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:37.694 -07 000000581 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:37.694 -07 000000626 INF: FPGA: Recv ZSGSRD 36128 17-03-18 07:05:37.704 -07 000000581 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:37.704 -07 000000581 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:37.704 -07 000000512 INF: FPGA: Recv ZPIEZORD 32204 17-03-18 07:05:37.714 -07 000000581 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:37.714 -07 000000581 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.748 V. Piezo Error = -8.7 V. 17-03-18 07:05:37.714 -07 000000581 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36132 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36130 (-171.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36128 (-171.5 uncal um), Max = 36138 (-171.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 07:05:37.714 -07 000000581 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36132, posNoise = 6, negNoise = 4 17-03-18 07:05:37.714 -07 000000581 INF: Z Motor: After move to -0.172442, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:37.714 -07 000000581 INF: Z Motor: Settle wait time = 1451 ms, measure time = 120 ms (allowed 150 ms), total time = 1571 ms 17-03-18 07:05:37.714 -07 000000581 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:37.744 -07 000000581 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms 17-03-18 07:05:37.744 -07 000000581 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:37.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:37.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:37.744 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:37.744 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:37.744 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 07:05:37.744 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:37.744 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:05:37.744 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 07:05:37.754 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 07:05:37.754 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 07:05:37.764 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-18 07:05:37.764 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-18 07:05:37.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 07:05:37.814 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 07:05:38.114 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 07:05:38.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 07:05:38.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 07:05:38.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start. 17-03-18 07:05:38.154 -07 000000606 INF: FPGA: Recv @CAMSNAP 380 17-03-18 07:05:38.154 -07 000000430 INF: FPGA: Recv CAMSNAP 17-03-18 07:05:38.154 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall 17-03-18 07:05:38.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 126 ms. 17-03-18 07:05:38.244 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:38.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 07:05:38.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-18 07:05:38.254 -07 000000618 INF: Autofocus start 17-03-18 07:05:38.254 -07 000000618 INF: MeasureProfile start 17-03-18 07:05:38.254 -07 000000581 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:05:38.254 -07 000000437 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:05:38.264 -07 000000581 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:05:38.264 -07 000000581 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 07:05:38.264 -07 000000618 INF: MeasureProfile done 17-03-18 07:05:38.264 -07 000000618 INF: X=-16 Z correction [um]=-0.1496812 17-03-18 07:05:38.264 -07 000000618 INF: Autofocus finished 17-03-18 07:05:38.464 -07 000000561 INF: FPGA: Recv FOCMRRIMG 17-03-18 07:05:38.464 -07 000000581 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 07:05:38.464 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.172442985117242. ---------- 17-03-18 07:05:38.464 -07 000000610 INF: Cycle 157 Tile 18 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:38.474 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36150, sync = True, waitForSettling = True) 17-03-18 07:05:38.474 -07 000000610 INF: Z Motor: Moving to -0.165484 mm, started at -0.172443 mm, distance = 6.96 um 17-03-18 07:05:38.474 -07 000000610 INF: FPGA: Xmit ZDACW 36150\n [Z Motor] 17-03-18 07:05:38.474 -07 000000512 INF: FPGA: Recv ZDACW 17-03-18 07:05:38.484 -07 000000610 INF: FPGA: 'ZDACW 36150' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:38.484 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:38.484 -07 000000626 INF: FPGA: Recv ZDACR 36150 17-03-18 07:05:38.494 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:38.494 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:38.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:38.644 -07 000000512 INF: FPGA: Recv ZSGSRD 35050 17-03-18 07:05:38.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:38.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:38.654 -07 000000474 INF: FPGA: Recv ZSGSRD 35049 17-03-18 07:05:38.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:38.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:38.664 -07 000000581 INF: FPGA: Recv ZSGSRD 35053 17-03-18 07:05:38.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:05:38.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:38.674 -07 000000626 INF: FPGA: Recv ZSGSRD 35049 17-03-18 07:05:38.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:38.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:38.684 -07 000000581 INF: FPGA: Recv ZSGSRD 35050 17-03-18 07:05:38.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:38.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:38.694 -07 000000512 INF: FPGA: Recv ZSGSRD 35049 17-03-18 07:05:38.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:38.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:38.704 -07 000000606 INF: FPGA: Recv ZSGSRD 35052 17-03-18 07:05:38.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:38.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:38.714 -07 000000561 INF: FPGA: Recv ZSGSRD 35056 17-03-18 07:05:38.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:38.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:38.724 -07 000000611 INF: FPGA: Recv ZSGSRD 35051 17-03-18 07:05:38.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:38.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:38.734 -07 000000626 INF: FPGA: Recv ZSGSRD 35051 17-03-18 07:05:38.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:38.744 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:38.744 -07 000000611 INF: FPGA: Recv ZPIEZORD 30759 17-03-18 07:05:38.754 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:38.754 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.516 V. Piezo Error = -9.5 V. 17-03-18 07:05:38.754 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35051 (-164.6 uncal um), Error = 0.8 uncal um, Median = 35050 (-164.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35049 (-164.6 uncal um), Max = 35056 (-164.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um) 17-03-18 07:05:38.754 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35051, posNoise = 5, negNoise = 2 17-03-18 07:05:38.754 -07 000000610 INF: Z Motor: After move to -0.165484, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:38.754 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 07:05:38.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:38.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:38.754 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:38.754 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:38.754 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:38.754 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:38.754 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:38.754 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:38.754 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:05:38.754 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:38.754 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:05:38.754 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:38.754 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 07:05:38.754 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:38.754 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 07:05:38.754 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:38.764 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 07:05:38.764 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 07:05:38.764 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 07:05:38.774 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 07:05:38.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36327 150\n [Camera] 17-03-18 07:05:38.974 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:05:39.444 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:05:39.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:05:39.444 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:39.444 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:39.444 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 07:05:39.444 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:05:39.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:05:39.454 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:39.454 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:39.454 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 07:05:39.644 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36327 859 17-03-18 07:05:39.794 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1012 17-03-18 07:05:39.824 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms. 17-03-18 07:05:39.824 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms. 17-03-18 07:05:39.824 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms. 17-03-18 07:05:39.824 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:39.824 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms. 17-03-18 07:05:39.824 -07 000000437 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:39.834 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:39.834 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-18 07:05:39.834 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:39.834 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 07:05:40.014 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:05:40.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:05:40.014 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:40.014 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:40.014 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-18 07:05:40.014 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:05:40.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:05:40.024 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:40.024 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:40.024 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-18 07:05:40.204 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:05:40.204 -07 000000437 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:40.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36327 150' command took 2 ms to send, 1429 ms to get response, and 1437 ms overall 17-03-18 07:05:40.214 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.165739 17-03-18 07:05:40.324 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16574 mm 17-03-18 07:05:40.324 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:40.334 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True) 17-03-18 07:05:40.334 -07 000000437 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm 17-03-18 07:05:40.334 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:40.404 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 388 ms. 17-03-18 07:05:40.404 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 07:05:40.404 -07 000000591 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:40.404 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms. 17-03-18 07:05:40.404 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-18 07:05:40.404 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:40.414 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:40.414 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-18 07:05:40.414 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 07:05:40.414 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-18 07:05:40.424 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 36206, sync = True, waitForSettling = False) 17-03-18 07:05:40.424 -07 000000591 INF: Z Motor: Moving to -0.165740 mm, started at -0.165498 mm, distance = -0.24 um 17-03-18 07:05:40.424 -07 000000591 INF: FPGA: Xmit ZDACW 36206\n [Z Motor] 17-03-18 07:05:40.424 -07 000000430 INF: FPGA: Recv YRDPOS 151566 17-03-18 07:05:40.424 -07 000000430 INF: FPGA: Recv ZDACW 17-03-18 07:05:40.424 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 89 ms to get response, and 96 ms overall 17-03-18 07:05:40.424 -07 000000437 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:40.424 -07 000000437 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:05:40.424 -07 000000437 INF: Y Motor: Moving 1353 steps-32 17-03-18 07:05:40.434 -07 000000591 INF: FPGA: 'ZDACW 36206' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:05:40.434 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:40.434 -07 000000430 INF: FPGA: Recv ZDACR 36206 17-03-18 07:05:40.444 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:40.444 -07 000000591 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet)) 17-03-18 07:05:40.444 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:05:40.814 -07 000000430 INF: FPGA: Recv YMVTILE 17-03-18 07:05:40.814 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall 17-03-18 07:05:40.854 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:40.854 -07 000000430 INF: FPGA: Recv YRDPOS 153253 17-03-18 07:05:40.864 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:05:40.864 -07 000000437 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:40.864 -07 000000437 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm) 17-03-18 07:05:40.864 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.180 mm/sec 17-03-18 07:05:41.214 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.997626, 17-03-18 07:05:41.814 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:41.814 -07 000000430 INF: FPGA: Recv YRDPOS 153253 17-03-18 07:05:41.824 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:41.824 -07 000000437 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:41.844 -07 000000437 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:41.844 -07 000000437 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:05:41.844 -07 000000437 INF: Y Motor: Moved to 74.8306 after 1508 ms (table move) 17-03-18 07:05:41.844 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.165740 mm (DAC = 36206) 17-03-18 07:05:41.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:41.844 -07 000000618 INF: FPGA: Recv ZSGSRD 35092 17-03-18 07:05:41.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:05:41.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:41.854 -07 000000512 INF: FPGA: Recv ZSGSRD 35086 17-03-18 07:05:41.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:41.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:41.864 -07 000000569 INF: FPGA: Recv ZSGSRD 35088 17-03-18 07:05:41.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:41.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:41.874 -07 000000512 INF: FPGA: Recv ZSGSRD 35094 17-03-18 07:05:41.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:41.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:41.884 -07 000000608 INF: FPGA: Recv ZSGSRD 35095 17-03-18 07:05:41.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:41.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:41.894 -07 000000430 INF: FPGA: Recv ZSGSRD 35093 17-03-18 07:05:41.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:41.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:41.904 -07 000000437 INF: FPGA: Recv ZSGSRD 35095 17-03-18 07:05:41.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:41.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:41.914 -07 000000591 INF: FPGA: Recv ZSGSRD 35083 17-03-18 07:05:41.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:41.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:41.924 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:05:41.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:05:41.924 -07 000000437 INF: FPGA: Recv ZSGSRD 35087 17-03-18 07:05:41.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:41.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:41.934 -07 000000430 INF: FPGA: Recv ZSGSRD 35087 17-03-18 07:05:41.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:41.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:41.944 -07 000000608 INF: FPGA: Recv ZPIEZORD 30832 17-03-18 07:05:41.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:41.954 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.525 V. Piezo Error = -9.4 V. 17-03-18 07:05:41.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35090 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35090 (-164.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35083 (-164.8 uncal um), Max = 35095 (-164.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:05:41.954 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35090, posNoise = 5, negNoise = 7 17-03-18 07:05:41.954 -07 000000610 INF: Z Motor: After move to -0.165740, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:41.954 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 107 ms (allowed 150 ms), total time = 1525 ms 17-03-18 07:05:41.954 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:42.004 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1670 ms 17-03-18 07:05:42.004 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:42.004 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.165748956065527. ---------- 17-03-18 07:05:42.004 -07 000000610 INF: Cycle 157 Tile 19 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:42.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36029, sync = True, waitForSettling = True) 17-03-18 07:05:42.004 -07 000000610 INF: Z Motor: Moving to -0.164930 mm, started at -0.165749 mm, distance = 0.82 um 17-03-18 07:05:42.004 -07 000000610 INF: FPGA: Xmit ZDACW 36029\n [Z Motor] 17-03-18 07:05:42.004 -07 000000437 INF: FPGA: Recv ZDACW 17-03-18 07:05:42.014 -07 000000610 INF: FPGA: 'ZDACW 36029' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:05:42.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:42.014 -07 000000437 INF: FPGA: Recv ZDACR 36029 17-03-18 07:05:42.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:42.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:42.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:42.174 -07 000000437 INF: FPGA: Recv ZSGSRD 34962 17-03-18 07:05:42.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:42.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:42.184 -07 000000569 INF: FPGA: Recv ZSGSRD 34969 17-03-18 07:05:42.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:42.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:42.194 -07 000000569 INF: FPGA: Recv ZSGSRD 34965 17-03-18 07:05:42.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:42.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:42.204 -07 000000437 INF: FPGA: Recv ZSGSRD 34966 17-03-18 07:05:42.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:42.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:42.214 -07 000000569 INF: FPGA: Recv ZSGSRD 34967 17-03-18 07:05:42.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:42.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:42.224 -07 000000437 INF: FPGA: Recv ZSGSRD 34965 17-03-18 07:05:42.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:42.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:42.234 -07 000000437 INF: FPGA: Recv ZSGSRD 34963 17-03-18 07:05:42.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:42.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:42.244 -07 000000437 INF: FPGA: Recv ZSGSRD 34965 17-03-18 07:05:42.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:42.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:42.254 -07 000000569 INF: FPGA: Recv ZSGSRD 34957 17-03-18 07:05:42.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:42.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:42.264 -07 000000569 INF: FPGA: Recv ZSGSRD 34970 17-03-18 07:05:42.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:42.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:42.274 -07 000000569 INF: FPGA: Recv ZPIEZORD 30657 17-03-18 07:05:42.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:42.284 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.498 V. Piezo Error = -9.5 V. 17-03-18 07:05:42.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34965 (-164.1 uncal um), Error = 0.8 uncal um, Median = 34965 (-164.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 34957 (-164.0 uncal um), Max = 34970 (-164.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 07:05:42.284 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34965, posNoise = 5, negNoise = 8 17-03-18 07:05:42.284 -07 000000610 INF: Z Motor: After move to -0.164930, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:42.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 07:05:42.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:42.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:42.284 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:42.284 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:42.284 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:42.284 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:42.284 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:42.284 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:42.284 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:05:42.284 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:05:42.284 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:42.284 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:42.294 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:05:42.294 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:05:42.294 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:42.294 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:42.304 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms. 17-03-18 07:05:42.304 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 07:05:42.304 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 07:05:42.304 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 07:05:42.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36206 150\n [Camera] 17-03-18 07:05:42.504 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:05:42.974 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:05:42.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:05:42.974 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:42.984 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:05:42.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:05:42.984 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:42.984 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:42.984 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:05:42.984 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:42.984 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-18 07:05:43.364 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 372 ms. 17-03-18 07:05:43.364 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms. 17-03-18 07:05:43.364 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:43.364 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 371 ms. 17-03-18 07:05:43.364 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms. 17-03-18 07:05:43.364 -07 000000611 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:43.364 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:43.364 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:43.364 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-18 07:05:43.374 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-18 07:05:43.374 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36206 859 17-03-18 07:05:43.374 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:05:43.544 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:05:43.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:05:43.554 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:05:43.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:05:43.554 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:43.554 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:43.554 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:43.554 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start. 17-03-18 07:05:43.554 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:43.554 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 07:05:43.934 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms. 17-03-18 07:05:43.934 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms. 17-03-18 07:05:43.934 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:43.934 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 378 ms. 17-03-18 07:05:43.934 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms. 17-03-18 07:05:43.934 -07 000000611 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:43.944 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:05:43.944 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:05:43.944 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-18 07:05:43.954 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-18 07:05:43.954 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1433 17-03-18 07:05:43.954 -07 000000611 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:43.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36206 150' command took 2 ms to send, 1643 ms to get response, and 1649 ms overall 17-03-18 07:05:43.954 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start. 17-03-18 07:05:43.994 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms. 17-03-18 07:05:43.994 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start. 17-03-18 07:05:44.034 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms. 17-03-18 07:05:44.044 -07 000000610 INF: Move compensator for Bottom-surface imaging. 17-03-18 07:05:44.044 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator] 17-03-18 07:05:44.044 -07 000000608 INF: FPGA: Recv EMCUR 17-03-18 07:05:44.054 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:05:44.054 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator] 17-03-18 07:05:44.554 -07 000000611 INF: FPGA: Recv EMIN 17-03-18 07:05:44.554 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall 17-03-18 07:05:44.554 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator] 17-03-18 07:05:44.554 -07 000000608 INF: FPGA: Recv EMCUR 17-03-18 07:05:44.564 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:05:44.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 07:05:44.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164945929547807. ------ 17-03-18 07:05:44.564 -07 000000611 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13941 mm 17-03-18 07:05:44.564 -07 000000611 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:44.564 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:05:45.314 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-18 07:05:45.314 -07 000000606 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm 17-03-18 07:05:45.314 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:46.314 -07 000000625 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:05:46.314 -07 000000625 INF: FPGA: Recv YRDPOS 153255 17-03-18 07:05:46.314 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 993 ms to get response, and 1001 ms overall 17-03-18 07:05:46.314 -07 000000606 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:46.314 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1743 ms to get response, and 1746 ms overall 17-03-18 07:05:46.314 -07 000000625 INF: Z Motor: Entering MoveAbsStepped (DAC = 30454, sync = True, waitForSettling = False) 17-03-18 07:05:46.314 -07 000000625 INF: Z Motor: Moving to -0.139409 mm, started at -0.164946 mm, distance = 25.54 um 17-03-18 07:05:46.314 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 07:05:46.324 -07 000000625 INF: FPGA: Xmit ZDACW 30454\n [Z Motor] 17-03-18 07:05:46.324 -07 000000606 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False 17-03-18 07:05:46.324 -07 000000606 INF: Y Motor: Moving to 122701 encoder counts 17-03-18 07:05:46.334 -07 000000606 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-18 07:05:47.314 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 07:05:47.314 -07 000000581 INF: FPGA: Recv FOCMRRFOC 17-03-18 07:05:47.314 -07 000000625 INF: FPGA: 'ZDACW 30454' command took 0 ms to send, 980 ms to get response, and 995 ms overall 17-03-18 07:05:47.314 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:05:47.314 -07 000000625 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:47.314 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:05:47.314 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 990 ms to get response, and 995 ms overall 17-03-18 07:05:47.314 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.963579, 17-03-18 07:05:47.314 -07 000000608 INF: FPGA: Recv ZDACR 30454 17-03-18 07:05:47.324 -07 000000625 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:05:47.324 -07 000000625 INF: Z Motor: MoveAbsStepped took 1004 ms (did NOT wait for settling yet)) 17-03-18 07:05:47.954 -07 000000581 INF: FPGA: Recv YMVTO 122701 23904 17-03-18 07:05:47.954 -07 000000606 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1633 ms overall 17-03-18 07:05:47.954 -07 000000606 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm) 17-03-18 07:05:47.954 -07 000000606 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%). 17-03-18 07:05:47.954 -07 000000606 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1634 ms, distance = 14.918 mm, average velocity = 9.130 mm/sec 17-03-18 07:05:50.804 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:50.804 -07 000000608 INF: FPGA: Recv YRDPOS 122695 17-03-18 07:05:50.814 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:50.814 -07 000000606 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:50.854 -07 000000606 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:50.854 -07 000000606 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm) 17-03-18 07:05:50.854 -07 000000606 INF: Y Motor: Moved to 59.9097 after 5542 ms 17-03-18 07:05:50.854 -07 000000611 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139409 mm (DAC = 30454) 17-03-18 07:05:50.854 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:50.864 -07 000000625 INF: FPGA: Recv ZSGSRD 31001 17-03-18 07:05:50.864 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-18 07:05:50.864 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:50.864 -07 000000561 INF: FPGA: Recv ZSGSRD 30991 17-03-18 07:05:50.874 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:05:50.874 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:50.874 -07 000000625 INF: FPGA: Recv ZSGSRD 30990 17-03-18 07:05:50.884 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:50.884 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:50.884 -07 000000591 INF: FPGA: Recv ZSGSRD 30990 17-03-18 07:05:50.894 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:50.894 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:50.894 -07 000000474 INF: FPGA: Recv ZSGSRD 30985 17-03-18 07:05:50.904 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:50.904 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:50.904 -07 000000561 INF: FPGA: Recv ZSGSRD 30997 17-03-18 07:05:50.914 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:50.914 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:50.914 -07 000000608 INF: FPGA: Recv ZSGSRD 30990 17-03-18 07:05:50.924 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:50.924 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:50.924 -07 000000591 INF: FPGA: Recv ZSGSRD 30987 17-03-18 07:05:50.934 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:50.934 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:50.934 -07 000000625 INF: FPGA: Recv ZSGSRD 30989 17-03-18 07:05:50.944 -07 000000611 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:50.944 -07 000000611 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:50.944 -07 000000606 INF: FPGA: Recv ZSGSRD 31002 17-03-18 07:05:50.954 -07 000000611 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:50.954 -07 000000611 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:50.954 -07 000000474 INF: FPGA: Recv ZPIEZORD 26507 17-03-18 07:05:50.964 -07 000000611 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:50.964 -07 000000611 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.647 V. Piezo Error = -9.8 V. 17-03-18 07:05:50.964 -07 000000611 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30992 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30990 (-138.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30985 (-138.6 uncal um), Max = 31002 (-138.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:05:50.964 -07 000000611 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30992, posNoise = 10, negNoise = 7 17-03-18 07:05:50.964 -07 000000611 INF: Z Motor: After move to -0.139409, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:50.964 -07 000000611 INF: Z Motor: Settle wait time = 4543 ms, measure time = 102 ms (allowed 150 ms), total time = 4645 ms 17-03-18 07:05:50.964 -07 000000611 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:51.014 -07 000000611 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 6442 ms 17-03-18 07:05:51.014 -07 000000611 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:51.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:51.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:51.014 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:51.014 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:51.014 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 07:05:51.014 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:51.014 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 07:05:51.014 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) start. 17-03-18 07:05:51.034 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms. 17-03-18 07:05:51.034 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 07:05:51.044 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-18 07:05:51.044 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 07:05:51.044 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-18 07:05:51.044 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 32 ms. 17-03-18 07:05:51.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 07:05:51.094 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 07:05:51.394 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 07:05:51.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 07:05:51.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 07:05:51.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start. 17-03-18 07:05:51.434 -07 000000608 INF: FPGA: Recv @CAMSNAP 380 17-03-18 07:05:51.434 -07 000000606 INF: FPGA: Recv CAMSNAP 17-03-18 07:05:51.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-18 07:05:51.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 120 ms. 17-03-18 07:05:51.524 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:51.524 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 07:05:51.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms. 17-03-18 07:05:51.534 -07 000000437 INF: Image SNR check: start 17-03-18 07:05:51.534 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:05:51.534 -07 000000608 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:05:51.544 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:05:51.544 -07 000000625 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 07:05:51.544 -07 000000437 INF: Image SNR check: pass [peak (Max-Min)=109.45] 17-03-18 07:05:51.544 -07 000000437 INF: Autofocus start 17-03-18 07:05:51.544 -07 000000437 INF: MeasureProfile start 17-03-18 07:05:51.554 -07 000000437 INF: MeasureProfile done 17-03-18 07:05:51.554 -07 000000437 INF: X=16 Z correction [um]=0.0530179 17-03-18 07:05:51.554 -07 000000437 INF: Autofocus finished 17-03-18 07:05:51.744 -07 000000626 INF: FPGA: Recv FOCMRRIMG 17-03-18 07:05:51.744 -07 000000625 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall 17-03-18 07:05:51.744 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.139422534708591. ---------- 17-03-18 07:05:51.744 -07 000000610 INF: Cycle 157 Tile 1 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:51.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28978, sync = True, waitForSettling = True) 17-03-18 07:05:51.754 -07 000000610 INF: Z Motor: Moving to -0.132653 mm, started at -0.139423 mm, distance = 6.77 um 17-03-18 07:05:51.754 -07 000000610 INF: FPGA: Xmit ZDACW 28978\n [Z Motor] 17-03-18 07:05:51.754 -07 000000591 INF: FPGA: Recv ZDACW 17-03-18 07:05:51.764 -07 000000610 INF: FPGA: 'ZDACW 28978' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:05:51.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:51.764 -07 000000606 INF: FPGA: Recv ZDACR 28978 17-03-18 07:05:51.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:51.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:51.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:51.924 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:05:51.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:05:51.924 -07 000000625 INF: FPGA: Recv ZSGSRD 29938 17-03-18 07:05:51.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:51.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:51.934 -07 000000430 INF: FPGA: Recv ZSGSRD 29938 17-03-18 07:05:51.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:51.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:51.944 -07 000000437 INF: FPGA: Recv ZSGSRD 29931 17-03-18 07:05:51.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:51.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:51.954 -07 000000591 INF: FPGA: Recv ZSGSRD 29935 17-03-18 07:05:51.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:51.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:51.964 -07 000000437 INF: FPGA: Recv ZSGSRD 29943 17-03-18 07:05:51.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:51.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:51.974 -07 000000430 INF: FPGA: Recv ZSGSRD 29941 17-03-18 07:05:51.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:51.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:51.984 -07 000000625 INF: FPGA: Recv ZSGSRD 29939 17-03-18 07:05:51.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:51.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:51.994 -07 000000591 INF: FPGA: Recv ZSGSRD 29933 17-03-18 07:05:52.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:52.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:52.004 -07 000000625 INF: FPGA: Recv ZSGSRD 29943 17-03-18 07:05:52.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:52.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:52.014 -07 000000608 INF: FPGA: Recv ZSGSRD 29942 17-03-18 07:05:52.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:52.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:52.024 -07 000000608 INF: FPGA: Recv ZPIEZORD 25331 17-03-18 07:05:52.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:52.034 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.422 V. Piezo Error = -10.1 V. 17-03-18 07:05:52.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29938 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29938 (-131.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29931 (-131.8 uncal um), Max = 29943 (-131.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:05:52.034 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29938, posNoise = 5, negNoise = 7 17-03-18 07:05:52.034 -07 000000610 INF: Z Motor: After move to -0.132653, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:52.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-18 07:05:52.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:52.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:52.034 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:52.034 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:52.034 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:52.034 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:52.034 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms. 17-03-18 07:05:52.034 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:52.044 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:52.044 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:52.044 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:05:52.044 -07 000000581 INF: Camera: sBCa_SetPowerMode(785074704, 1) start. 17-03-18 07:05:52.044 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:05:52.044 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:52.054 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-18 07:05:52.054 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 07:05:52.064 -07 000000581 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms. 17-03-18 07:05:52.064 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:52.064 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 07:05:52.064 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:52.084 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 07:05:52.084 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 42 ms. 17-03-18 07:05:52.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 29155 150\n [Camera] 17-03-18 07:05:52.284 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:05:52.684 -07 000000581 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.974486, 17-03-18 07:05:52.754 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:05:52.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:05:52.764 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:52.764 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:05:52.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:05:52.764 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:52.884 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:52.884 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 07:05:52.894 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:52.894 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:05:53.284 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms. 17-03-18 07:05:53.284 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-18 07:05:53.284 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:53.284 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 395 ms. 17-03-18 07:05:53.284 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-18 07:05:53.284 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:53.284 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:53.284 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms. 17-03-18 07:05:53.294 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:53.294 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms. 17-03-18 07:05:53.294 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29155 859 17-03-18 07:05:53.294 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:05:53.334 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:05:53.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:05:53.334 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:53.334 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:05:53.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:05:53.334 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:53.334 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:53.334 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start. 17-03-18 07:05:53.344 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:53.344 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 07:05:53.524 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:05:53.524 -07 000000618 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:53.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 29155 150' command took 2 ms to send, 1431 ms to get response, and 1436 ms overall 17-03-18 07:05:53.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 07:05:53.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.90966796875, Z-Position -0.132651415111175. ------ 17-03-18 07:05:53.524 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:05:53.524 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13905 mm 17-03-18 07:05:53.524 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:53.534 -07 000000581 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:05:53.534 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:05:53.534 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 07:05:53.534 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30376, sync = True, waitForSettling = False) 17-03-18 07:05:53.534 -07 000000626 INF: Z Motor: Moving to -0.139052 mm, started at -0.132651 mm, distance = -6.40 um 17-03-18 07:05:53.534 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True) 17-03-18 07:05:53.534 -07 000000430 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm 17-03-18 07:05:53.544 -07 000000626 INF: FPGA: Xmit ZDACW 30376\n [Z Motor] 17-03-18 07:05:53.544 -07 000000611 INF: FPGA: Recv ZDACW 17-03-18 07:05:53.554 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:53.554 -07 000000626 INF: FPGA: 'ZDACW 30376' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 07:05:53.554 -07 000000512 INF: FPGA: Recv YRDPOS 122695 17-03-18 07:05:53.564 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-18 07:05:53.564 -07 000000430 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:53.564 -07 000000430 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:05:53.564 -07 000000430 INF: Y Motor: Moving 1333 steps0 17-03-18 07:05:53.564 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:53.564 -07 000000474 INF: FPGA: Recv ZDACR 30376 17-03-18 07:05:53.574 -07 000000626 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:05:53.574 -07 000000626 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet)) 17-03-18 07:05:53.574 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:05:53.724 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 384 ms. 17-03-18 07:05:53.724 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-18 07:05:53.724 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:53.724 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:53.724 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 389 ms. 17-03-18 07:05:53.724 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 07:05:53.724 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:53.734 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:05:53.734 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 07:05:53.734 -07 000000625 INF: FPGA: Recv FOCMRRFOC 17-03-18 07:05:53.734 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall 17-03-18 07:05:53.734 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-18 07:05:53.944 -07 000000437 INF: FPGA: Recv YMVTILE 17-03-18 07:05:53.944 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 07:05:53.994 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:53.994 -07 000000581 INF: FPGA: Recv YRDPOS 124378 17-03-18 07:05:54.004 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:05:54.004 -07 000000430 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:54.004 -07 000000430 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm) 17-03-18 07:05:54.004 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.833 mm, average velocity = 2.147 mm/sec 17-03-18 07:05:54.954 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:54.954 -07 000000626 INF: FPGA: Recv YRDPOS 124379 17-03-18 07:05:54.964 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:54.964 -07 000000430 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:54.994 -07 000000430 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:54.994 -07 000000430 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 07:05:54.994 -07 000000430 INF: Y Motor: Moved to 60.7319 after 1461 ms (table move) 17-03-18 07:05:54.994 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139052 mm (DAC = 30376) 17-03-18 07:05:54.994 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:55.004 -07 000000608 INF: FPGA: Recv ZSGSRD 30930 17-03-18 07:05:55.004 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-18 07:05:55.004 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:55.004 -07 000000608 INF: FPGA: Recv ZSGSRD 30938 17-03-18 07:05:55.014 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:05:55.014 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:55.014 -07 000000608 INF: FPGA: Recv ZSGSRD 30924 17-03-18 07:05:55.024 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:55.024 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:55.024 -07 000000581 INF: FPGA: Recv ZSGSRD 30927 17-03-18 07:05:55.034 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:55.034 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:55.034 -07 000000611 INF: FPGA: Recv ZSGSRD 30937 17-03-18 07:05:55.044 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:55.044 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:55.044 -07 000000512 INF: FPGA: Recv ZSGSRD 30930 17-03-18 07:05:55.054 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:55.054 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:55.054 -07 000000512 INF: FPGA: Recv ZSGSRD 30945 17-03-18 07:05:55.064 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:55.064 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:55.064 -07 000000512 INF: FPGA: Recv ZSGSRD 30941 17-03-18 07:05:55.074 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:55.074 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:55.074 -07 000000512 INF: FPGA: Recv ZSGSRD 30937 17-03-18 07:05:55.084 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:55.084 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:55.084 -07 000000474 INF: FPGA: Recv ZSGSRD 30931 17-03-18 07:05:55.094 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:55.094 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:55.094 -07 000000430 INF: FPGA: Recv ZPIEZORD 26701 17-03-18 07:05:55.104 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:55.104 -07 000000618 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.635 V. Piezo Error = -9.3 V. 17-03-18 07:05:55.104 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30934 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30934 (-138.2 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30924 (-138.2 uncal um), Max = 30945 (-138.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um) 17-03-18 07:05:55.104 -07 000000618 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30934, posNoise = 11, negNoise = 10 17-03-18 07:05:55.104 -07 000000618 INF: Z Motor: After move to -0.139052, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:55.104 -07 000000618 INF: Z Motor: Settle wait time = 1466 ms, measure time = 101 ms (allowed 150 ms), total time = 1567 ms 17-03-18 07:05:55.104 -07 000000618 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms 17-03-18 07:05:55.154 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms 17-03-18 07:05:55.154 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:05:55.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:55.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:55.154 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:55.154 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 07:05:55.154 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:55.154 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:55.154 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:05:55.154 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 07:05:55.164 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 07:05:55.164 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 07:05:55.174 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 07:05:55.174 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-18 07:05:55.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 07:05:55.224 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 07:05:55.524 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 07:05:55.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 07:05:55.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 07:05:55.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start. 17-03-18 07:05:55.564 -07 000000437 INF: FPGA: Recv @CAMSNAP 380 17-03-18 07:05:55.564 -07 000000606 INF: FPGA: Recv CAMSNAP 17-03-18 07:05:55.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall 17-03-18 07:05:55.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 126 ms. 17-03-18 07:05:55.654 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:55.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 07:05:55.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-18 07:05:55.664 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:05:55.664 -07 000000618 INF: Autofocus start 17-03-18 07:05:55.664 -07 000000618 INF: MeasureProfile start 17-03-18 07:05:55.664 -07 000000626 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:05:55.674 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:05:55.674 -07 000000437 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 07:05:55.674 -07 000000618 INF: MeasureProfile done 17-03-18 07:05:55.674 -07 000000618 INF: X=0 Z correction [um]=-0.02394831 17-03-18 07:05:55.674 -07 000000618 INF: Autofocus finished 17-03-18 07:05:55.874 -07 000000569 INF: FPGA: Recv FOCMRRIMG 17-03-18 07:05:55.874 -07 000000437 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 07:05:55.874 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.139049930404368. ---------- 17-03-18 07:05:55.874 -07 000000610 INF: Cycle 157 Tile 2 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:05:55.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28884, sync = True, waitForSettling = True) 17-03-18 07:05:55.884 -07 000000610 INF: Z Motor: Moving to -0.132222 mm, started at -0.139050 mm, distance = 6.83 um 17-03-18 07:05:55.884 -07 000000610 INF: FPGA: Xmit ZDACW 28884\n [Z Motor] 17-03-18 07:05:55.884 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 07:05:55.894 -07 000000610 INF: FPGA: 'ZDACW 28884' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:05:55.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:55.894 -07 000000625 INF: FPGA: Recv ZDACR 28884 17-03-18 07:05:55.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:55.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:05:56.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:56.054 -07 000000430 INF: FPGA: Recv ZSGSRD 29865 17-03-18 07:05:56.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:56.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:56.064 -07 000000430 INF: FPGA: Recv ZSGSRD 29873 17-03-18 07:05:56.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:56.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:56.074 -07 000000430 INF: FPGA: Recv ZSGSRD 29876 17-03-18 07:05:56.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:56.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:56.084 -07 000000430 INF: FPGA: Recv ZSGSRD 29871 17-03-18 07:05:56.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:56.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:56.094 -07 000000430 INF: FPGA: Recv ZSGSRD 29871 17-03-18 07:05:56.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:56.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:56.104 -07 000000430 INF: FPGA: Recv ZSGSRD 29868 17-03-18 07:05:56.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:56.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:56.114 -07 000000430 INF: FPGA: Recv ZSGSRD 29874 17-03-18 07:05:56.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:56.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:56.124 -07 000000430 INF: FPGA: Recv ZSGSRD 29870 17-03-18 07:05:56.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:56.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:56.134 -07 000000430 INF: FPGA: Recv ZSGSRD 29871 17-03-18 07:05:56.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:56.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:56.144 -07 000000430 INF: FPGA: Recv ZSGSRD 29863 17-03-18 07:05:56.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:56.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:05:56.154 -07 000000430 INF: FPGA: Recv ZPIEZORD 25275 17-03-18 07:05:56.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:56.164 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -10.1 V. 17-03-18 07:05:56.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29870 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29871 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29863 (-131.4 uncal um), Max = 29876 (-131.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:05:56.164 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29870, posNoise = 6, negNoise = 7 17-03-18 07:05:56.164 -07 000000610 INF: Z Motor: After move to -0.132222, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:05:56.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 07:05:56.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:05:56.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:05:56.164 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:05:56.164 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:05:56.164 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:05:56.164 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:05:56.174 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:05:56.174 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:05:56.174 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:05:56.174 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:05:56.194 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 07:05:56.194 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:05:56.194 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:05:56.194 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:05:56.194 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:05:56.194 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:05:56.194 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:05:56.194 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:05:56.214 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms. 17-03-18 07:05:56.214 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms. 17-03-18 07:05:56.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 29060 150\n [Camera] 17-03-18 07:05:56.414 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:05:56.884 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:05:56.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:05:56.884 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:56.884 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:56.884 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-18 07:05:57.284 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms. 17-03-18 07:05:57.404 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 513 ms. 17-03-18 07:05:57.404 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:57.404 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-18 07:05:57.404 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms. 17-03-18 07:05:57.414 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:05:57.414 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:05:57.414 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29060 859 17-03-18 07:05:57.414 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:05:57.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:05:57.414 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:05:57.414 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:57.414 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:57.414 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:05:57.804 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 381 ms. 17-03-18 07:05:57.804 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms. 17-03-18 07:05:57.804 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:57.804 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-18 07:05:57.804 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-18 07:05:57.814 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:05:57.814 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:05:57.814 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:05:57.814 -07 000000591 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:05:57.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:05:57.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 29060 150' command took 2 ms to send, 1599 ms to get response, and 1608 ms overall 17-03-18 07:05:57.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:05:57.824 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:05:57.824 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:05:57.824 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:05:57.824 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-18 07:05:57.824 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:05:57.834 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 07:05:57.924 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133134 17-03-18 07:05:57.924 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13313 mm 17-03-18 07:05:57.924 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:05:57.924 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True) 17-03-18 07:05:57.924 -07 000000591 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm 17-03-18 07:05:57.924 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:57.924 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 29083, sync = True, waitForSettling = False) 17-03-18 07:05:57.924 -07 000000581 INF: Z Motor: Moving to -0.133133 mm, started at -0.132215 mm, distance = -0.92 um 17-03-18 07:05:57.924 -07 000000512 INF: FPGA: Recv YRDPOS 124379 17-03-18 07:05:57.934 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:05:57.934 -07 000000591 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:57.934 -07 000000591 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:05:57.934 -07 000000591 INF: Y Motor: Moving 1345 steps-23 17-03-18 07:05:57.934 -07 000000581 INF: FPGA: Xmit ZDACW 29083\n [Z Motor] 17-03-18 07:05:57.934 -07 000000512 INF: FPGA: Recv ZDACW 17-03-18 07:05:57.944 -07 000000581 INF: FPGA: 'ZDACW 29083' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-18 07:05:57.944 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:05:57.944 -07 000000474 INF: FPGA: Recv ZDACR 29083 17-03-18 07:05:57.954 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:05:57.954 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:57.954 -07 000000581 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet)) 17-03-18 07:05:58.134 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.999021, 17-03-18 07:05:58.224 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms. 17-03-18 07:05:58.224 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 07:05:58.224 -07 000000611 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:58.224 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms. 17-03-18 07:05:58.224 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 07:05:58.224 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:05:58.234 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:58.234 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:05:58.234 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-18 07:05:58.234 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-18 07:05:58.324 -07 000000512 INF: FPGA: Recv YMVTILE 17-03-18 07:05:58.324 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:05:58.374 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:58.384 -07 000000611 INF: FPGA: Recv YRDPOS 126080 17-03-18 07:05:58.394 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:58.394 -07 000000591 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:58.394 -07 000000591 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm) 17-03-18 07:05:58.394 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec 17-03-18 07:05:59.344 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:05:59.344 -07 000000611 INF: FPGA: Recv YRDPOS 126080 17-03-18 07:05:59.354 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:59.354 -07 000000591 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:05:59.384 -07 000000591 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:05:59.384 -07 000000591 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:05:59.384 -07 000000591 INF: Y Motor: Moved to 61.5625 after 1460 ms (table move) 17-03-18 07:05:59.384 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133133 mm (DAC = 29083) 17-03-18 07:05:59.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:59.394 -07 000000591 INF: FPGA: Recv ZSGSRD 30007 17-03-18 07:05:59.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 07:05:59.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:59.394 -07 000000626 INF: FPGA: Recv ZSGSRD 30004 17-03-18 07:05:59.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:59.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:59.404 -07 000000591 INF: FPGA: Recv ZSGSRD 30018 17-03-18 07:05:59.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:59.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:59.414 -07 000000591 INF: FPGA: Recv ZSGSRD 30007 17-03-18 07:05:59.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:59.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:59.424 -07 000000591 INF: FPGA: Recv ZSGSRD 30011 17-03-18 07:05:59.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:59.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:59.434 -07 000000591 INF: FPGA: Recv ZSGSRD 30014 17-03-18 07:05:59.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:05:59.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:05:59.444 -07 000000591 INF: FPGA: Recv ZSGSRD 30014 17-03-18 07:05:59.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:05:59.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:00.314 -07 000000437 INF: FPGA: Recv ZSGSRD 30017 17-03-18 07:06:00.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 850 ms to get response, and 860 ms overall 17-03-18 07:06:00.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:00.314 -07 000000591 INF: FPGA: Recv ZSGSRD 30022 17-03-18 07:06:00.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:00.324 -07 000000474 INF: FPGA: Recv ZSGSRD 30020 17-03-18 07:06:00.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:00.334 -07 000000611 INF: FPGA: Recv ZPIEZORD 25556 17-03-18 07:06:00.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.344 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -9.8 V. 17-03-18 07:06:00.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30013 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30014 (-132.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30004 (-132.3 uncal um), Max = 30022 (-132.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-18 07:06:00.344 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30013, posNoise = 9, negNoise = 9 17-03-18 07:06:00.344 -07 000000610 INF: Z Motor: After move to -0.133133, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:00.344 -07 000000610 INF: Z Motor: Settle wait time = 1462 ms, measure time = 953 ms (allowed 150 ms), total time = 2415 ms 17-03-18 07:06:00.344 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 953 ms, longer than max expected time of 150 ms 17-03-18 07:06:00.344 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2418 ms 17-03-18 07:06:00.344 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:00.344 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.133133231021807. ---------- 17-03-18 07:06:00.344 -07 000000610 INF: Cycle 157 Tile 3 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:00.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28906, sync = True, waitForSettling = True) 17-03-18 07:06:00.344 -07 000000610 INF: Z Motor: Moving to -0.132323 mm, started at -0.133133 mm, distance = 0.81 um 17-03-18 07:06:00.344 -07 000000610 INF: FPGA: Xmit ZDACW 28906\n [Z Motor] 17-03-18 07:06:00.354 -07 000000474 INF: FPGA: Recv ZDACW 17-03-18 07:06:00.354 -07 000000610 INF: FPGA: 'ZDACW 28906' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 07:06:00.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:00.354 -07 000000430 INF: FPGA: Recv ZDACR 28906 17-03-18 07:06:00.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:00.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:00.514 -07 000000437 INF: FPGA: Recv ZSGSRD 29883 17-03-18 07:06:00.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:00.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:00.524 -07 000000512 INF: FPGA: Recv ZSGSRD 29890 17-03-18 07:06:00.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:00.534 -07 000000591 INF: FPGA: Recv ZSGSRD 29888 17-03-18 07:06:00.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:00.544 -07 000000611 INF: FPGA: Recv ZSGSRD 29884 17-03-18 07:06:00.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:00.554 -07 000000430 INF: FPGA: Recv ZSGSRD 29896 17-03-18 07:06:00.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:00.564 -07 000000474 INF: FPGA: Recv ZSGSRD 29882 17-03-18 07:06:00.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:00.574 -07 000000626 INF: FPGA: Recv ZSGSRD 29892 17-03-18 07:06:00.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:00.584 -07 000000512 INF: FPGA: Recv ZSGSRD 29886 17-03-18 07:06:00.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:00.594 -07 000000626 INF: FPGA: Recv ZSGSRD 29890 17-03-18 07:06:00.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:00.604 -07 000000512 INF: FPGA: Recv ZSGSRD 29888 17-03-18 07:06:00.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:00.614 -07 000000626 INF: FPGA: Recv ZPIEZORD 25390 17-03-18 07:06:00.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:00.624 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.411 V. Piezo Error = -9.9 V. 17-03-18 07:06:00.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29888 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29888 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29882 (-131.5 uncal um), Max = 29896 (-131.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:06:00.624 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29888, posNoise = 8, negNoise = 6 17-03-18 07:06:00.624 -07 000000610 INF: Z Motor: After move to -0.132323, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:00.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms) 17-03-18 07:06:00.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:00.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:00.624 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:00.624 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:00.624 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:00.624 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:00.624 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:00.624 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:00.624 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms. 17-03-18 07:06:00.624 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:00.624 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms. 17-03-18 07:06:00.624 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:00.634 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:06:00.634 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:06:00.634 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:00.634 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:00.644 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 07:06:00.644 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 07:06:00.644 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-18 07:06:00.644 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 07:06:00.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 29083 150\n [Camera] 17-03-18 07:06:00.844 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:01.314 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:01.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:01.314 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:01.314 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:01.314 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start. 17-03-18 07:06:01.324 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:01.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:01.324 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:01.324 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:01.324 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start. 17-03-18 07:06:01.514 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29083 859 17-03-18 07:06:01.664 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:01.694 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms. 17-03-18 07:06:01.694 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms. 17-03-18 07:06:01.694 -07 000000591 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:01.704 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:01.704 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 385 ms. 17-03-18 07:06:01.704 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 07:06:01.704 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:01.704 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-18 07:06:01.704 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:01.704 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 07:06:01.884 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:01.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:01.894 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:01.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:01.894 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:01.894 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:01.894 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start. 17-03-18 07:06:01.894 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:02.004 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:06:02.004 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:06:02.014 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:02.014 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:06:02.074 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1429 17-03-18 07:06:02.084 -07 000000569 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:02.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 29083 150' command took 2 ms to send, 1430 ms to get response, and 1437 ms overall 17-03-18 07:06:02.084 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.132674 17-03-18 07:06:02.084 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13267 mm 17-03-18 07:06:02.084 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:02.084 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True) 17-03-18 07:06:02.084 -07 000000611 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm 17-03-18 07:06:02.084 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:02.084 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 28983, sync = True, waitForSettling = False) 17-03-18 07:06:02.084 -07 000000437 INF: Z Motor: Moving to -0.132676 mm, started at -0.132330 mm, distance = -0.35 um 17-03-18 07:06:02.084 -07 000000569 INF: FPGA: Recv YRDPOS 126080 17-03-18 07:06:02.094 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:06:02.094 -07 000000437 INF: FPGA: Xmit ZDACW 28983\n [Z Motor] 17-03-18 07:06:02.094 -07 000000611 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:02.094 -07 000000611 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:02.094 -07 000000611 INF: Y Motor: Moving 1344 steps-21 17-03-18 07:06:02.094 -07 000000626 INF: FPGA: Recv ZDACW 17-03-18 07:06:02.104 -07 000000437 INF: FPGA: 'ZDACW 28983' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 07:06:02.104 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:02.104 -07 000000626 INF: FPGA: Recv ZDACR 28983 17-03-18 07:06:02.114 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:02.114 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:02.114 -07 000000437 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet)) 17-03-18 07:06:02.284 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms. 17-03-18 07:06:02.284 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 07:06:02.284 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:02.294 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:02.294 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-18 07:06:02.414 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 398 ms. 17-03-18 07:06:02.414 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-18 07:06:02.414 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:02.414 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-18 07:06:02.414 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms. 17-03-18 07:06:02.484 -07 000000430 INF: FPGA: Recv YMVTILE 17-03-18 07:06:02.484 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:06:02.534 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:02.544 -07 000000437 INF: FPGA: Recv YRDPOS 127783 17-03-18 07:06:02.544 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-18 07:06:02.544 -07 000000611 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:02.544 -07 000000611 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-18 07:06:02.544 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec 17-03-18 07:06:03.494 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:03.494 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.989471, 17-03-18 07:06:03.494 -07 000000606 INF: FPGA: Recv YRDPOS 127783 17-03-18 07:06:03.504 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.504 -07 000000611 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:03.534 -07 000000611 INF: Y Motor: After move to 62.402607, error = -0.008564, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:03.534 -07 000000611 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:03.534 -07 000000611 INF: Y Motor: Moved to 62.3940 after 1450 ms (table move) 17-03-18 07:06:03.534 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132676 mm (DAC = 28983) 17-03-18 07:06:03.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.544 -07 000000591 INF: FPGA: Recv ZSGSRD 29945 17-03-18 07:06:03.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 07:06:03.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.554 -07 000000591 INF: FPGA: Recv ZSGSRD 29942 17-03-18 07:06:03.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.564 -07 000000611 INF: FPGA: Recv ZSGSRD 29939 17-03-18 07:06:03.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.574 -07 000000611 INF: FPGA: Recv ZSGSRD 29936 17-03-18 07:06:03.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.584 -07 000000618 INF: FPGA: Recv ZSGSRD 29940 17-03-18 07:06:03.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:06:03.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.594 -07 000000618 INF: FPGA: Recv ZSGSRD 29946 17-03-18 07:06:03.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.604 -07 000000430 INF: FPGA: Recv ZSGSRD 29948 17-03-18 07:06:03.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.614 -07 000000430 INF: FPGA: Recv ZSGSRD 29946 17-03-18 07:06:03.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.624 -07 000000430 INF: FPGA: Recv ZSGSRD 29941 17-03-18 07:06:03.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.634 -07 000000430 INF: FPGA: Recv ZSGSRD 29942 17-03-18 07:06:03.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:03.644 -07 000000430 INF: FPGA: Recv ZPIEZORD 25473 17-03-18 07:06:03.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.654 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.423 V. Piezo Error = -9.8 V. 17-03-18 07:06:03.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29942 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29942 (-131.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29936 (-131.9 uncal um), Max = 29948 (-131.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:06:03.654 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29942, posNoise = 6, negNoise = 6 17-03-18 07:06:03.654 -07 000000610 INF: Z Motor: After move to -0.132676, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:03.654 -07 000000610 INF: Z Motor: Settle wait time = 1452 ms, measure time = 112 ms (allowed 150 ms), total time = 1564 ms 17-03-18 07:06:03.654 -07 000000610 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:03.694 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms 17-03-18 07:06:03.694 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:03.694 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39404296875, Z-position -0.132677111959742. ---------- 17-03-18 07:06:03.694 -07 000000610 INF: Cycle 157 Tile 4 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:03.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28806, sync = True, waitForSettling = True) 17-03-18 07:06:03.694 -07 000000610 INF: Z Motor: Moving to -0.131865 mm, started at -0.132677 mm, distance = 0.81 um 17-03-18 07:06:03.694 -07 000000610 INF: FPGA: Xmit ZDACW 28806\n [Z Motor] 17-03-18 07:06:03.694 -07 000000474 INF: FPGA: Recv ZDACW 17-03-18 07:06:03.704 -07 000000610 INF: FPGA: 'ZDACW 28806' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:06:03.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:03.704 -07 000000474 INF: FPGA: Recv ZDACR 28806 17-03-18 07:06:03.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:03.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.864 -07 000000474 INF: FPGA: Recv ZSGSRD 29813 17-03-18 07:06:03.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.874 -07 000000474 INF: FPGA: Recv ZSGSRD 29813 17-03-18 07:06:03.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.884 -07 000000474 INF: FPGA: Recv ZSGSRD 29821 17-03-18 07:06:03.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.894 -07 000000474 INF: FPGA: Recv ZSGSRD 29812 17-03-18 07:06:03.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.904 -07 000000474 INF: FPGA: Recv ZSGSRD 29812 17-03-18 07:06:03.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.914 -07 000000474 INF: FPGA: Recv ZSGSRD 29818 17-03-18 07:06:03.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.924 -07 000000474 INF: FPGA: Recv ZSGSRD 29817 17-03-18 07:06:03.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.934 -07 000000474 INF: FPGA: Recv ZSGSRD 29817 17-03-18 07:06:03.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.944 -07 000000474 INF: FPGA: Recv ZSGSRD 29809 17-03-18 07:06:03.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:03.954 -07 000000430 INF: FPGA: Recv ZSGSRD 29817 17-03-18 07:06:03.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:06:03.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:03.964 -07 000000430 INF: FPGA: Recv ZPIEZORD 25321 17-03-18 07:06:03.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:03.974 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -9.9 V. 17-03-18 07:06:03.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29815 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29815 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29809 (-131.0 uncal um), Max = 29821 (-131.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:06:03.974 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29815, posNoise = 6, negNoise = 6 17-03-18 07:06:03.974 -07 000000610 INF: Z Motor: After move to -0.131865, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:03.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms) 17-03-18 07:06:03.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:03.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:03.974 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:03.974 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:03.974 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:03.974 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:03.974 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:03.974 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:03.974 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:06:03.974 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:03.974 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:06:03.974 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:03.974 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:06:03.974 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:03.974 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:06:03.984 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:03.984 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 07:06:03.984 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 07:06:03.984 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 07:06:03.984 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 07:06:03.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28983 150\n [Camera] 17-03-18 07:06:04.194 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:04.664 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:04.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:04.664 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:04.674 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:04.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:04.674 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:04.674 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:04.674 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start. 17-03-18 07:06:04.674 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:04.674 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 07:06:04.864 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28983 859 17-03-18 07:06:05.014 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:05.044 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 369 ms. 17-03-18 07:06:05.044 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms. 17-03-18 07:06:05.044 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:05.054 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:05.054 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 377 ms. 17-03-18 07:06:05.054 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms. 17-03-18 07:06:05.054 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:05.054 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:05.054 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-18 07:06:05.054 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-18 07:06:05.234 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:05.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:05.234 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:05.244 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:05.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:05.244 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:05.244 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:05.244 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-18 07:06:05.254 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:05.254 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 07:06:05.434 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1429 17-03-18 07:06:05.434 -07 000000437 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:05.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28983 150' command took 2 ms to send, 1431 ms to get response, and 1436 ms overall 17-03-18 07:06:05.434 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.132416 17-03-18 07:06:05.434 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13242 mm 17-03-18 07:06:05.434 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:05.434 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True) 17-03-18 07:06:05.434 -07 000000626 INF: Y Motor: Moving to 63.2326 mm, started at 62.3940 mm, delta = 0.8386 mm 17-03-18 07:06:05.434 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:05.434 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 28926, sync = True, waitForSettling = False) 17-03-18 07:06:05.434 -07 000000611 INF: Z Motor: Moving to -0.132415 mm, started at -0.131861 mm, distance = -0.55 um 17-03-18 07:06:05.434 -07 000000430 INF: FPGA: Recv YRDPOS 127783 17-03-18 07:06:05.444 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:06:05.444 -07 000000626 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:05.444 -07 000000626 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:05.444 -07 000000626 INF: Y Motor: Moving 1342 steps-18 17-03-18 07:06:05.444 -07 000000611 INF: FPGA: Xmit ZDACW 28926\n [Z Motor] 17-03-18 07:06:05.444 -07 000000474 INF: FPGA: Recv ZDACW 17-03-18 07:06:05.454 -07 000000611 INF: FPGA: 'ZDACW 28926' command took 1 ms to send, 0 ms to get response, and 12 ms overall 17-03-18 07:06:05.454 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:05.454 -07 000000512 INF: FPGA: Recv ZDACR 28926 17-03-18 07:06:05.464 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:05.464 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:05.464 -07 000000611 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet)) 17-03-18 07:06:05.624 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms. 17-03-18 07:06:05.624 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms. 17-03-18 07:06:05.624 -07 000000591 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:05.634 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:05.634 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms. 17-03-18 07:06:05.634 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms. 17-03-18 07:06:05.634 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:05.634 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:05.634 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 07:06:05.634 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-18 07:06:05.834 -07 000000618 INF: FPGA: Recv YMVTILE 17-03-18 07:06:05.834 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:06:05.894 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:05.894 -07 000000474 INF: FPGA: Recv YRDPOS 129480 17-03-18 07:06:05.904 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:06:05.904 -07 000000626 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:05.904 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-18 07:06:05.904 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec 17-03-18 07:06:06.854 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:06.854 -07 000000437 INF: FPGA: Recv YRDPOS 129480 17-03-18 07:06:06.864 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:06.864 -07 000000626 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:06.894 -07 000000626 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:06.894 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:06.894 -07 000000626 INF: Y Motor: Moved to 63.2227 after 1457 ms (table move) 17-03-18 07:06:06.894 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132415 mm (DAC = 28926) 17-03-18 07:06:06.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:06.894 -07 000000437 INF: FPGA: Recv ZSGSRD 29905 17-03-18 07:06:06.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:06:06.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:06.904 -07 000000591 INF: FPGA: Recv ZSGSRD 29899 17-03-18 07:06:06.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:06.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:06.914 -07 000000606 INF: FPGA: Recv ZSGSRD 29900 17-03-18 07:06:06.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:06.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:06.924 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:06:06.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:06:06.924 -07 000000625 INF: FPGA: Recv ZSGSRD 29907 17-03-18 07:06:06.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:06.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:06.934 -07 000000606 INF: FPGA: Recv ZSGSRD 29899 17-03-18 07:06:06.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:06.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:06.944 -07 000000626 INF: FPGA: Recv ZSGSRD 29904 17-03-18 07:06:06.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:06.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:06.954 -07 000000611 INF: FPGA: Recv ZSGSRD 29898 17-03-18 07:06:06.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:06.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:06.964 -07 000000606 INF: FPGA: Recv ZSGSRD 29903 17-03-18 07:06:06.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:06.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:06.974 -07 000000591 INF: FPGA: Recv ZSGSRD 29901 17-03-18 07:06:06.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:06.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:06.984 -07 000000512 INF: FPGA: Recv ZSGSRD 29903 17-03-18 07:06:06.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:06.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:06.994 -07 000000626 INF: FPGA: Recv ZPIEZORD 25422 17-03-18 07:06:07.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:07.004 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -9.8 V. 17-03-18 07:06:07.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29902 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29902 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29898 (-131.6 uncal um), Max = 29907 (-131.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 07:06:07.004 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29902, posNoise = 5, negNoise = 4 17-03-18 07:06:07.004 -07 000000610 INF: Z Motor: After move to -0.132415, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:07.004 -07 000000610 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms 17-03-18 07:06:07.004 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:07.054 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms 17-03-18 07:06:07.054 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:07.054 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.132420143474071. ---------- 17-03-18 07:06:07.054 -07 000000610 INF: Cycle 157 Tile 5 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:07.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28750, sync = True, waitForSettling = True) 17-03-18 07:06:07.054 -07 000000610 INF: Z Motor: Moving to -0.131609 mm, started at -0.132420 mm, distance = 0.81 um 17-03-18 07:06:07.054 -07 000000610 INF: FPGA: Xmit ZDACW 28750\n [Z Motor] 17-03-18 07:06:07.054 -07 000000512 INF: FPGA: Recv ZDACW 17-03-18 07:06:07.064 -07 000000610 INF: FPGA: 'ZDACW 28750' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:06:07.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:07.064 -07 000000618 INF: FPGA: Recv ZDACR 28750 17-03-18 07:06:07.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:07.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:07.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:07.224 -07 000000591 INF: FPGA: Recv ZSGSRD 29779 17-03-18 07:06:07.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:07.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:07.234 -07 000000606 INF: FPGA: Recv ZSGSRD 29782 17-03-18 07:06:07.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:07.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:07.244 -07 000000430 INF: FPGA: Recv ZSGSRD 29775 17-03-18 07:06:07.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:07.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:07.254 -07 000000611 INF: FPGA: Recv ZSGSRD 29777 17-03-18 07:06:07.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:07.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:07.264 -07 000000512 INF: FPGA: Recv ZSGSRD 29780 17-03-18 07:06:07.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:07.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:07.274 -07 000000611 INF: FPGA: Recv ZSGSRD 29774 17-03-18 07:06:07.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:07.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:07.284 -07 000000611 INF: FPGA: Recv ZSGSRD 29777 17-03-18 07:06:07.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:07.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:07.294 -07 000000512 INF: FPGA: Recv ZSGSRD 29779 17-03-18 07:06:07.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:07.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:07.304 -07 000000625 INF: FPGA: Recv ZSGSRD 29776 17-03-18 07:06:07.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:07.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:07.314 -07 000000626 INF: FPGA: Recv ZSGSRD 29780 17-03-18 07:06:07.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:07.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:07.324 -07 000000625 INF: FPGA: Recv ZPIEZORD 25254 17-03-18 07:06:07.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:07.334 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.9 V. 17-03-18 07:06:07.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29778 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29778 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29774 (-130.8 uncal um), Max = 29782 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 07:06:07.334 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29778, posNoise = 4, negNoise = 4 17-03-18 07:06:07.334 -07 000000610 INF: Z Motor: After move to -0.131609, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:07.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms) 17-03-18 07:06:07.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:07.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:07.334 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:07.334 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:07.334 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:07.334 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:07.334 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:07.334 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:07.334 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 07:06:07.334 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:07.334 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:06:07.334 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:07.344 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:06:07.344 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:07.344 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:06:07.344 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:07.354 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 07:06:07.354 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:06:07.354 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 07:06:07.354 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:06:07.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28926 150\n [Camera] 17-03-18 07:06:07.564 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:08.034 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:08.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:08.034 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:08.034 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:08.034 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start. 17-03-18 07:06:08.034 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:08.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:08.034 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:08.164 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:08.164 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:06:08.224 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28926 859 17-03-18 07:06:08.374 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:08.414 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 381 ms. 17-03-18 07:06:08.414 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-18 07:06:08.414 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:08.424 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:08.424 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 07:06:08.534 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 368 ms. 17-03-18 07:06:08.534 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms. 17-03-18 07:06:08.534 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:08.534 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:08.544 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms. 17-03-18 07:06:08.604 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:08.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:08.604 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:08.604 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:08.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:08.614 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:08.614 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:08.614 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start. 17-03-18 07:06:08.614 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:08.614 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 07:06:08.794 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1431 17-03-18 07:06:08.794 -07 000000618 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:08.804 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28926 150' command took 2 ms to send, 1429 ms to get response, and 1438 ms overall 17-03-18 07:06:08.804 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 07:06:08.804 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.131623541168493. ------ 17-03-18 07:06:08.804 -07 000000625 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:06:08.804 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13804 mm 17-03-18 07:06:08.804 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:08.804 -07 000000585 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:06:08.804 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 30156, sync = True, waitForSettling = False) 17-03-18 07:06:08.814 -07 000000581 INF: Z Motor: Moving to -0.138045 mm, started at -0.131624 mm, distance = -6.42 um 17-03-18 07:06:08.814 -07 000000625 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:06:08.814 -07 000000581 INF: FPGA: Xmit ZDACW 30156\n [Z Motor] 17-03-18 07:06:08.814 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True) 17-03-18 07:06:08.814 -07 000000608 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm 17-03-18 07:06:08.814 -07 000000626 INF: FPGA: Recv ZDACW 17-03-18 07:06:08.824 -07 000000581 INF: FPGA: 'ZDACW 30156' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:08.824 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:08.824 -07 000000606 INF: FPGA: Recv YRDPOS 129480 17-03-18 07:06:08.834 -07 000000625 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 07:06:08.834 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-18 07:06:08.834 -07 000000608 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:08.834 -07 000000608 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:08.834 -07 000000608 INF: Y Motor: Moving 1344 steps-20 17-03-18 07:06:08.844 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:08.844 -07 000000611 INF: FPGA: Recv ZDACR 30156 17-03-18 07:06:08.854 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:08.854 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 07:06:08.854 -07 000000581 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet)) 17-03-18 07:06:08.874 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.973092, 17-03-18 07:06:08.994 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms. 17-03-18 07:06:08.994 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms. 17-03-18 07:06:08.994 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:08.994 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 386 ms. 17-03-18 07:06:08.994 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-18 07:06:08.994 -07 000000591 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:09.004 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:09.004 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:09.004 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 07:06:09.014 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-18 07:06:09.034 -07 000000581 INF: FPGA: Recv FOCMRRFOC 17-03-18 07:06:09.034 -07 000000625 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 07:06:09.224 -07 000000606 INF: FPGA: Recv YMVTILE 17-03-18 07:06:09.224 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:06:09.284 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:09.284 -07 000000626 INF: FPGA: Recv YRDPOS 131186 17-03-18 07:06:09.294 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:06:09.294 -07 000000608 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:09.294 -07 000000608 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm) 17-03-18 07:06:09.294 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec 17-03-18 07:06:10.244 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:10.244 -07 000000576 INF: FPGA: Recv YRDPOS 131186 17-03-18 07:06:10.254 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:10.254 -07 000000608 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:10.284 -07 000000608 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:10.284 -07 000000608 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:10.284 -07 000000608 INF: Y Motor: Moved to 64.0557 after 1469 ms (table move) 17-03-18 07:06:10.284 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138045 mm (DAC = 30156) 17-03-18 07:06:10.284 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:10.284 -07 000000611 INF: FPGA: Recv ZSGSRD 30779 17-03-18 07:06:10.294 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:06:10.294 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:10.294 -07 000000625 INF: FPGA: Recv ZSGSRD 30778 17-03-18 07:06:10.304 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:10.304 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:10.304 -07 000000576 INF: FPGA: Recv ZSGSRD 30781 17-03-18 07:06:10.314 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:10.314 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:10.314 -07 000000608 INF: FPGA: Recv ZSGSRD 30773 17-03-18 07:06:10.324 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:10.324 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:10.324 -07 000000591 INF: FPGA: Recv ZSGSRD 30774 17-03-18 07:06:10.334 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:10.334 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:10.334 -07 000000606 INF: FPGA: Recv ZSGSRD 30778 17-03-18 07:06:10.344 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:10.344 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:10.344 -07 000000012 INF: FPGA: Recv ZSGSRD 30783 17-03-18 07:06:10.354 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:10.354 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:10.354 -07 000000430 INF: FPGA: Recv ZSGSRD 30786 17-03-18 07:06:10.364 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:10.364 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:10.364 -07 000000618 INF: FPGA: Recv ZSGSRD 30776 17-03-18 07:06:10.374 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:10.374 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:10.374 -07 000000585 INF: FPGA: Recv ZSGSRD 30784 17-03-18 07:06:10.384 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:10.384 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:10.384 -07 000000608 INF: FPGA: Recv ZPIEZORD 26607 17-03-18 07:06:10.394 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:10.394 -07 000000512 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.602 V. Piezo Error = -9.2 V. 17-03-18 07:06:10.394 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30779 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30778 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30773 (-137.2 uncal um), Max = 30786 (-137.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:06:10.394 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30779, posNoise = 7, negNoise = 6 17-03-18 07:06:10.394 -07 000000512 INF: Z Motor: After move to -0.138045, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:10.394 -07 000000512 INF: Z Motor: Settle wait time = 1474 ms, measure time = 106 ms (allowed 150 ms), total time = 1580 ms 17-03-18 07:06:10.394 -07 000000512 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:10.444 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms 17-03-18 07:06:10.444 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:10.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:10.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:10.444 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:10.444 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:10.444 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 07:06:10.444 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:10.444 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-18 07:06:10.444 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 07:06:10.454 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 07:06:10.454 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 07:06:10.464 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 07:06:10.464 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-18 07:06:10.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 07:06:10.514 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 07:06:10.814 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 07:06:10.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 07:06:10.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 07:06:10.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start. 17-03-18 07:06:10.854 -07 000000606 INF: FPGA: Recv @CAMSNAP 381 17-03-18 07:06:10.854 -07 000000569 INF: FPGA: Recv CAMSNAP 17-03-18 07:06:10.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 386 ms overall 17-03-18 07:06:10.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 125 ms. 17-03-18 07:06:10.934 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:10.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 07:06:10.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-18 07:06:10.954 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:06:10.954 -07 000000626 INF: Autofocus start 17-03-18 07:06:10.954 -07 000000626 INF: MeasureProfile start 17-03-18 07:06:10.954 -07 000000618 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:06:10.964 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:06:10.964 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 07:06:10.964 -07 000000626 INF: MeasureProfile done 17-03-18 07:06:10.964 -07 000000626 INF: X=-48 Z correction [um]=-0.2370583 17-03-18 07:06:10.964 -07 000000626 INF: Autofocus finished 17-03-18 07:06:11.164 -07 000000569 INF: FPGA: Recv FOCMRRIMG 17-03-18 07:06:11.164 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 07:06:11.164 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.138054177522395. ---------- 17-03-18 07:06:11.164 -07 000000610 INF: Cycle 157 Tile 6 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:11.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28617, sync = True, waitForSettling = True) 17-03-18 07:06:11.174 -07 000000610 INF: Z Motor: Moving to -0.131000 mm, started at -0.138054 mm, distance = 7.05 um 17-03-18 07:06:11.174 -07 000000610 INF: FPGA: Xmit ZDACW 28617\n [Z Motor] 17-03-18 07:06:11.174 -07 000000430 INF: FPGA: Recv ZDACW 17-03-18 07:06:11.184 -07 000000610 INF: FPGA: 'ZDACW 28617' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:06:11.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:11.184 -07 000000625 INF: FPGA: Recv ZDACR 28617 17-03-18 07:06:11.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:11.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:11.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:11.344 -07 000000561 INF: FPGA: Recv ZSGSRD 29681 17-03-18 07:06:11.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:11.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:11.354 -07 000000626 INF: FPGA: Recv ZSGSRD 29682 17-03-18 07:06:11.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:11.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:11.364 -07 000000591 INF: FPGA: Recv ZSGSRD 29681 17-03-18 07:06:11.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:11.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:11.374 -07 000000479 INF: FPGA: Recv ZSGSRD 29679 17-03-18 07:06:11.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:11.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:11.384 -07 000000625 INF: FPGA: Recv ZSGSRD 29684 17-03-18 07:06:11.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:11.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:11.394 -07 000000569 INF: FPGA: Recv ZSGSRD 29686 17-03-18 07:06:11.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:11.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:11.404 -07 000000581 INF: FPGA: Recv ZSGSRD 29687 17-03-18 07:06:11.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:11.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:11.414 -07 000000611 INF: FPGA: Recv ZSGSRD 29679 17-03-18 07:06:11.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:11.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:11.424 -07 000000576 INF: FPGA: Recv ZSGSRD 29680 17-03-18 07:06:11.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:11.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:11.434 -07 000000625 INF: FPGA: Recv ZSGSRD 29681 17-03-18 07:06:11.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:11.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:11.444 -07 000000585 INF: FPGA: Recv ZPIEZORD 25161 17-03-18 07:06:11.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:11.454 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.9 V. 17-03-18 07:06:11.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29682 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29681 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29679 (-130.2 uncal um), Max = 29687 (-130.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-18 07:06:11.454 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29682, posNoise = 5, negNoise = 3 17-03-18 07:06:11.454 -07 000000610 INF: Z Motor: After move to -0.131000, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:11.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 07:06:11.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:11.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:11.454 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:11.454 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:11.454 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:11.454 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:11.454 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:11.454 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:11.454 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms. 17-03-18 07:06:11.454 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:11.454 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms. 17-03-18 07:06:11.454 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:11.464 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 07:06:11.464 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:11.464 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:06:11.464 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:11.474 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 07:06:11.474 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms. 17-03-18 07:06:11.474 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms. 17-03-18 07:06:11.474 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms. 17-03-18 07:06:11.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28793 150\n [Camera] 17-03-18 07:06:11.674 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:11.924 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:06:11.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:06:12.154 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 670 17-03-18 07:06:12.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 670 17-03-18 07:06:12.154 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:12.154 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:12.154 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-18 07:06:12.154 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 670 17-03-18 07:06:12.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 670 17-03-18 07:06:12.154 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:12.154 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:12.154 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start. 17-03-18 07:06:12.344 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28793 859 17-03-18 07:06:12.494 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:12.544 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms. 17-03-18 07:06:12.544 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 07:06:12.544 -07 000000012 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:12.544 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 390 ms. 17-03-18 07:06:12.544 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-18 07:06:12.544 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:12.554 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:12.554 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-18 07:06:12.554 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:12.564 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms. 17-03-18 07:06:12.724 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:12.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:12.724 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:12.834 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:12.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:12.834 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:12.834 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start. 17-03-18 07:06:12.834 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:12.844 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:12.844 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:06:12.914 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:06:12.914 -07 000000581 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:12.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28793 150' command took 2 ms to send, 1432 ms to get response, and 1436 ms overall 17-03-18 07:06:12.914 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.131646 17-03-18 07:06:12.914 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13165 mm 17-03-18 07:06:12.914 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:12.914 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True) 17-03-18 07:06:12.914 -07 000000561 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm 17-03-18 07:06:12.914 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:12.914 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 28758, sync = True, waitForSettling = False) 17-03-18 07:06:12.914 -07 000000626 INF: Z Motor: Moving to -0.131646 mm, started at -0.131007 mm, distance = -0.64 um 17-03-18 07:06:12.924 -07 000000626 INF: FPGA: Xmit ZDACW 28758\n [Z Motor] 17-03-18 07:06:12.924 -07 000000581 INF: FPGA: Recv YRDPOS 131187 17-03-18 07:06:12.924 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:06:12.924 -07 000000561 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:12.924 -07 000000591 INF: FPGA: Recv ZDACW 17-03-18 07:06:12.924 -07 000000561 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:12.924 -07 000000561 INF: Y Motor: Moving 1338 steps-14 17-03-18 07:06:12.934 -07 000000626 INF: FPGA: 'ZDACW 28758' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-18 07:06:12.934 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:12.934 -07 000000012 INF: FPGA: Recv ZDACR 28758 17-03-18 07:06:12.944 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:12.944 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:12.944 -07 000000626 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet)) 17-03-18 07:06:13.224 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 385 ms. 17-03-18 07:06:13.224 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-18 07:06:13.224 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:13.234 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms. 17-03-18 07:06:13.234 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-18 07:06:13.234 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:13.234 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:13.234 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:13.234 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms. 17-03-18 07:06:13.244 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms. 17-03-18 07:06:13.314 -07 000000569 INF: FPGA: Recv YMVTILE 17-03-18 07:06:13.314 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall 17-03-18 07:06:13.374 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:13.374 -07 000000581 INF: FPGA: Recv YRDPOS 132869 17-03-18 07:06:13.384 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:13.384 -07 000000561 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:13.384 -07 000000561 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-18 07:06:13.384 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.124 mm/sec 17-03-18 07:06:14.234 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.997626, 17-03-18 07:06:14.334 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:14.334 -07 000000581 INF: FPGA: Recv YRDPOS 132869 17-03-18 07:06:14.344 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:14.344 -07 000000561 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:14.374 -07 000000561 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:14.374 -07 000000561 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:14.374 -07 000000561 INF: Y Motor: Moved to 64.8774 after 1457 ms (table move) 17-03-18 07:06:14.374 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131646 mm (DAC = 28758) 17-03-18 07:06:14.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.384 -07 000000479 INF: FPGA: Recv ZSGSRD 29780 17-03-18 07:06:14.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 07:06:14.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.384 -07 000000591 INF: FPGA: Recv ZSGSRD 29787 17-03-18 07:06:14.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.394 -07 000000576 INF: FPGA: Recv ZSGSRD 29780 17-03-18 07:06:14.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.404 -07 000000581 INF: FPGA: Recv ZSGSRD 29785 17-03-18 07:06:14.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.414 -07 000000561 INF: FPGA: Recv ZSGSRD 29776 17-03-18 07:06:14.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.424 -07 000000591 INF: FPGA: Recv ZSGSRD 29786 17-03-18 07:06:14.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.434 -07 000000626 INF: FPGA: Recv ZSGSRD 29782 17-03-18 07:06:14.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.444 -07 000000012 INF: FPGA: Recv ZSGSRD 29778 17-03-18 07:06:14.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.454 -07 000000576 INF: FPGA: Recv ZSGSRD 29786 17-03-18 07:06:14.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.464 -07 000000591 INF: FPGA: Recv ZSGSRD 29788 17-03-18 07:06:14.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:14.474 -07 000000576 INF: FPGA: Recv ZPIEZORD 25355 17-03-18 07:06:14.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.484 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.7 V. 17-03-18 07:06:14.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29783 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29784 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29776 (-130.8 uncal um), Max = 29788 (-130.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:06:14.484 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29783, posNoise = 5, negNoise = 7 17-03-18 07:06:14.484 -07 000000610 INF: Z Motor: After move to -0.131646, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:14.484 -07 000000610 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms 17-03-18 07:06:14.484 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:14.534 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms 17-03-18 07:06:14.534 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:14.534 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.131655662229202. ---------- 17-03-18 07:06:14.534 -07 000000610 INF: Cycle 157 Tile 7 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:14.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28581, sync = True, waitForSettling = True) 17-03-18 07:06:14.534 -07 000000610 INF: Z Motor: Moving to -0.130835 mm, started at -0.131656 mm, distance = 0.82 um 17-03-18 07:06:14.534 -07 000000610 INF: FPGA: Xmit ZDACW 28581\n [Z Motor] 17-03-18 07:06:14.534 -07 000000561 INF: FPGA: Recv ZDACW 17-03-18 07:06:14.544 -07 000000610 INF: FPGA: 'ZDACW 28581' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:06:14.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:14.544 -07 000000626 INF: FPGA: Recv ZDACR 28581 17-03-18 07:06:14.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:14.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.704 -07 000000576 INF: FPGA: Recv ZSGSRD 29660 17-03-18 07:06:14.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:14.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.714 -07 000000561 INF: FPGA: Recv ZSGSRD 29659 17-03-18 07:06:14.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.724 -07 000000576 INF: FPGA: Recv ZSGSRD 29659 17-03-18 07:06:14.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.734 -07 000000626 INF: FPGA: Recv ZSGSRD 29654 17-03-18 07:06:14.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.744 -07 000000479 INF: FPGA: Recv ZSGSRD 29657 17-03-18 07:06:14.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.754 -07 000000569 INF: FPGA: Recv ZSGSRD 29649 17-03-18 07:06:14.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.774 -07 000000581 INF: FPGA: Recv ZSGSRD 29660 17-03-18 07:06:14.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:06:14.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.784 -07 000000569 INF: FPGA: Recv ZSGSRD 29651 17-03-18 07:06:14.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.794 -07 000000479 INF: FPGA: Recv ZSGSRD 29662 17-03-18 07:06:14.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:14.804 -07 000000581 INF: FPGA: Recv ZSGSRD 29656 17-03-18 07:06:14.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:14.814 -07 000000591 INF: FPGA: Recv ZPIEZORD 25186 17-03-18 07:06:14.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:14.824 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.8 V. 17-03-18 07:06:14.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29657 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29658 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29649 (-130.0 uncal um), Max = 29662 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 07:06:14.824 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29657, posNoise = 5, negNoise = 8 17-03-18 07:06:14.824 -07 000000610 INF: Z Motor: After move to -0.130835, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:14.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms) 17-03-18 07:06:14.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:14.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:14.824 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:14.824 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:14.824 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:14.824 -07 000000581 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:14.824 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:14.824 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:14.824 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:06:14.824 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:14.824 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:06:14.824 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:14.824 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-18 07:06:14.824 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:14.824 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:06:14.834 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:14.844 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms. 17-03-18 07:06:14.844 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms. 17-03-18 07:06:14.844 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms. 17-03-18 07:06:14.844 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-18 07:06:14.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28758 150\n [Camera] 17-03-18 07:06:15.044 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:15.524 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:15.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:15.524 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:15.524 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:15.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:15.524 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:15.524 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:15.524 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start. 17-03-18 07:06:15.534 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:15.534 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 07:06:15.714 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28758 859 17-03-18 07:06:15.864 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:15.904 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 373 ms. 17-03-18 07:06:15.904 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms. 17-03-18 07:06:15.904 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:15.904 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 371 ms. 17-03-18 07:06:15.904 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms. 17-03-18 07:06:15.904 -07 000000591 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:15.904 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:15.904 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-18 07:06:15.904 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:15.914 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 07:06:16.094 -07 000000479 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:16.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:16.094 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:16.094 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:16.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:16.094 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:16.094 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:16.094 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-18 07:06:16.104 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:16.104 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start. 17-03-18 07:06:16.284 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:06:16.284 -07 000000437 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:16.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28758 150' command took 2 ms to send, 1434 ms to get response, and 1436 ms overall 17-03-18 07:06:16.284 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.131534 17-03-18 07:06:16.284 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13153 mm 17-03-18 07:06:16.284 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:16.414 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 28734, sync = True, waitForSettling = False) 17-03-18 07:06:16.414 -07 000000626 INF: Z Motor: Moving to -0.131536 mm, started at -0.130846 mm, distance = -0.69 um 17-03-18 07:06:16.414 -07 000000626 INF: FPGA: Xmit ZDACW 28734\n [Z Motor] 17-03-18 07:06:16.414 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True) 17-03-18 07:06:16.414 -07 000000591 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm 17-03-18 07:06:16.414 -07 000000430 INF: FPGA: Recv ZDACW 17-03-18 07:06:16.424 -07 000000626 INF: FPGA: 'ZDACW 28734' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:06:16.424 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:16.424 -07 000000512 INF: FPGA: Recv YRDPOS 132869 17-03-18 07:06:16.434 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:16.434 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-18 07:06:16.434 -07 000000591 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:16.434 -07 000000591 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:16.434 -07 000000591 INF: Y Motor: Moving 1352 steps-31 17-03-18 07:06:16.434 -07 000000569 INF: FPGA: Recv ZDACR 28734 17-03-18 07:06:16.444 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:06:16.444 -07 000000626 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet)) 17-03-18 07:06:16.444 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:16.474 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 377 ms. 17-03-18 07:06:16.474 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms. 17-03-18 07:06:16.474 -07 000000012 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:16.474 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:16.474 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-18 07:06:16.474 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms. 17-03-18 07:06:16.474 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms. 17-03-18 07:06:16.484 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:16.484 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:16.494 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-18 07:06:16.814 -07 000000437 INF: FPGA: Recv YMVTILE 17-03-18 07:06:16.814 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 07:06:16.874 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:16.874 -07 000000611 INF: FPGA: Recv YRDPOS 134580 17-03-18 07:06:16.884 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:06:16.884 -07 000000591 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:16.884 -07 000000591 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-18 07:06:16.884 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.178 mm/sec 17-03-18 07:06:16.924 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:06:16.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:06:17.834 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:17.834 -07 000000012 INF: FPGA: Recv YRDPOS 134580 17-03-18 07:06:17.844 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:17.844 -07 000000591 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:17.884 -07 000000591 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:17.884 -07 000000591 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:17.884 -07 000000591 INF: Y Motor: Moved to 65.7129 after 1468 ms (table move) 17-03-18 07:06:17.884 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131536 mm (DAC = 28734) 17-03-18 07:06:17.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:17.884 -07 000000608 INF: FPGA: Recv ZSGSRD 29763 17-03-18 07:06:17.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:06:17.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:17.894 -07 000000576 INF: FPGA: Recv ZSGSRD 29764 17-03-18 07:06:17.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:17.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:17.904 -07 000000437 INF: FPGA: Recv ZSGSRD 29759 17-03-18 07:06:17.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:17.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:17.914 -07 000000474 INF: FPGA: Recv ZSGSRD 29758 17-03-18 07:06:17.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:17.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:17.924 -07 000000608 INF: FPGA: Recv ZSGSRD 29761 17-03-18 07:06:17.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:17.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:17.934 -07 000000561 INF: FPGA: Recv ZSGSRD 29773 17-03-18 07:06:17.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:17.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:17.944 -07 000000625 INF: FPGA: Recv ZSGSRD 29768 17-03-18 07:06:17.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:17.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:17.954 -07 000000012 INF: FPGA: Recv ZSGSRD 29760 17-03-18 07:06:17.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:17.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:17.964 -07 000000569 INF: FPGA: Recv ZSGSRD 29768 17-03-18 07:06:17.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:17.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:17.974 -07 000000626 INF: FPGA: Recv ZSGSRD 29764 17-03-18 07:06:17.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:17.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:17.984 -07 000000437 INF: FPGA: Recv ZPIEZORD 25296 17-03-18 07:06:17.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:17.994 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.385 V. Piezo Error = -9.8 V. 17-03-18 07:06:17.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29764 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29764 (-130.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29758 (-130.7 uncal um), Max = 29773 (-130.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:06:17.994 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29764, posNoise = 9, negNoise = 6 17-03-18 07:06:17.994 -07 000000610 INF: Z Motor: After move to -0.131536, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:17.994 -07 000000610 INF: Z Motor: Settle wait time = 1471 ms, measure time = 107 ms (allowed 150 ms), total time = 1578 ms 17-03-18 07:06:17.994 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:18.044 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1753 ms 17-03-18 07:06:18.044 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:18.044 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.131533602198508. ---------- 17-03-18 07:06:18.044 -07 000000610 INF: Cycle 157 Tile 8 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:18.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28557, sync = True, waitForSettling = True) 17-03-18 07:06:18.044 -07 000000610 INF: Z Motor: Moving to -0.130726 mm, started at -0.131534 mm, distance = 0.81 um 17-03-18 07:06:18.044 -07 000000610 INF: FPGA: Xmit ZDACW 28557\n [Z Motor] 17-03-18 07:06:18.044 -07 000000591 INF: FPGA: Recv ZDACW 17-03-18 07:06:18.054 -07 000000610 INF: FPGA: 'ZDACW 28557' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:06:18.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:18.054 -07 000000512 INF: FPGA: Recv ZDACR 28557 17-03-18 07:06:18.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:18.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:18.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:18.214 -07 000000012 INF: FPGA: Recv ZSGSRD 29642 17-03-18 07:06:18.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:18.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:18.224 -07 000000512 INF: FPGA: Recv ZSGSRD 29643 17-03-18 07:06:18.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:18.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:18.234 -07 000000591 INF: FPGA: Recv ZSGSRD 29638 17-03-18 07:06:18.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:18.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:18.244 -07 000000581 INF: FPGA: Recv ZSGSRD 29638 17-03-18 07:06:18.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:18.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:18.254 -07 000000608 INF: FPGA: Recv ZSGSRD 29640 17-03-18 07:06:18.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:18.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:18.264 -07 000000512 INF: FPGA: Recv ZSGSRD 29648 17-03-18 07:06:18.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:18.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:18.274 -07 000000591 INF: FPGA: Recv ZSGSRD 29637 17-03-18 07:06:18.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:18.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:18.284 -07 000000437 INF: FPGA: Recv ZSGSRD 29634 17-03-18 07:06:18.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:18.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:18.294 -07 000000561 INF: FPGA: Recv ZSGSRD 29642 17-03-18 07:06:18.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:18.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:18.304 -07 000000479 INF: FPGA: Recv ZSGSRD 29639 17-03-18 07:06:18.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:18.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:18.314 -07 000000626 INF: FPGA: Recv ZPIEZORD 25160 17-03-18 07:06:18.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:18.324 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.8 V. 17-03-18 07:06:18.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29640 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29640 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29634 (-129.9 uncal um), Max = 29648 (-130.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:06:18.324 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29640, posNoise = 8, negNoise = 6 17-03-18 07:06:18.324 -07 000000610 INF: Z Motor: After move to -0.130726, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:18.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 07:06:18.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:18.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:18.324 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:18.324 -07 000000479 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:18.324 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:18.324 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:18.324 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:18.324 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:18.324 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 07:06:18.324 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:18.324 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:06:18.324 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:18.324 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 07:06:18.324 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:18.334 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 07:06:18.334 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:18.334 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 07:06:18.334 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 07:06:18.344 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 07:06:18.344 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 07:06:18.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28734 150\n [Camera] 17-03-18 07:06:18.544 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:19.024 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:19.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:19.024 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:19.024 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:19.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:19.024 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:19.024 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:19.024 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-18 07:06:19.034 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:19.034 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-18 07:06:19.214 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28734 859 17-03-18 07:06:19.364 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:19.404 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 370 ms. 17-03-18 07:06:19.404 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 373 ms. 17-03-18 07:06:19.404 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms. 17-03-18 07:06:19.404 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:19.404 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms. 17-03-18 07:06:19.404 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:19.404 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:19.404 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-18 07:06:19.404 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:19.414 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-18 07:06:19.594 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.988112, 17-03-18 07:06:19.594 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:19.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:19.594 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:19.594 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:19.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:19.594 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:19.594 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:19.594 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-18 07:06:19.594 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:19.594 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 07:06:19.784 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:06:19.784 -07 000000561 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:19.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28734 150' command took 2 ms to send, 1434 ms to get response, and 1440 ms overall 17-03-18 07:06:19.784 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131019 17-03-18 07:06:19.784 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13102 mm 17-03-18 07:06:19.784 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:19.784 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True) 17-03-18 07:06:19.784 -07 000000591 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm 17-03-18 07:06:19.784 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:19.784 -07 000000581 INF: Z Motor: Entering MoveAbsStepped (DAC = 28621, sync = True, waitForSettling = False) 17-03-18 07:06:19.784 -07 000000581 INF: Z Motor: Moving to -0.131019 mm, started at -0.130737 mm, distance = -0.28 um 17-03-18 07:06:19.794 -07 000000581 INF: FPGA: Xmit ZDACW 28621\n [Z Motor] 17-03-18 07:06:19.794 -07 000000474 INF: FPGA: Recv YRDPOS 134580 17-03-18 07:06:19.794 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-18 07:06:19.794 -07 000000591 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:19.794 -07 000000591 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:19.794 -07 000000591 INF: Y Motor: Moving 1344 steps-20 17-03-18 07:06:19.794 -07 000000625 INF: FPGA: Recv ZDACW 17-03-18 07:06:19.804 -07 000000581 INF: FPGA: 'ZDACW 28621' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:19.804 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:19.814 -07 000000581 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:19.814 -07 000000474 INF: FPGA: Recv ZDACR 28621 17-03-18 07:06:19.824 -07 000000581 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:06:19.824 -07 000000581 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet)) 17-03-18 07:06:19.974 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms. 17-03-18 07:06:19.974 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms. 17-03-18 07:06:19.974 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:19.974 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms. 17-03-18 07:06:19.974 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms. 17-03-18 07:06:19.974 -07 000000437 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:19.974 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:19.974 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:19.984 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-18 07:06:19.984 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-18 07:06:20.174 -07 000000581 INF: FPGA: Recv YMVTILE 17-03-18 07:06:20.174 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall 17-03-18 07:06:20.234 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:20.234 -07 000000430 INF: FPGA: Recv YRDPOS 136270 17-03-18 07:06:20.244 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:06:20.244 -07 000000591 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:20.244 -07 000000591 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm) 17-03-18 07:06:20.244 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.175 mm/sec 17-03-18 07:06:21.194 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:21.194 -07 000000430 INF: FPGA: Recv YRDPOS 136270 17-03-18 07:06:21.204 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.204 -07 000000591 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:21.234 -07 000000591 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:21.234 -07 000000591 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:21.234 -07 000000591 INF: Y Motor: Moved to 66.5381 after 1447 ms (table move) 17-03-18 07:06:21.234 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131019 mm (DAC = 28621) 17-03-18 07:06:21.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.244 -07 000000430 INF: FPGA: Recv ZSGSRD 29687 17-03-18 07:06:21.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.254 -07 000000591 INF: FPGA: Recv ZSGSRD 29686 17-03-18 07:06:21.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.264 -07 000000437 INF: FPGA: Recv ZSGSRD 29677 17-03-18 07:06:21.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.274 -07 000000591 INF: FPGA: Recv ZSGSRD 29681 17-03-18 07:06:21.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.284 -07 000000437 INF: FPGA: Recv ZSGSRD 29685 17-03-18 07:06:21.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.294 -07 000000474 INF: FPGA: Recv ZSGSRD 29684 17-03-18 07:06:21.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.304 -07 000000430 INF: FPGA: Recv ZSGSRD 29688 17-03-18 07:06:21.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.314 -07 000000625 INF: FPGA: Recv ZSGSRD 29684 17-03-18 07:06:21.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.324 -07 000000581 INF: FPGA: Recv ZSGSRD 29685 17-03-18 07:06:21.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.334 -07 000000437 INF: FPGA: Recv ZSGSRD 29688 17-03-18 07:06:21.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:21.344 -07 000000581 INF: FPGA: Recv ZPIEZORD 25237 17-03-18 07:06:21.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.354 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.8 V. 17-03-18 07:06:21.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29684 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29685 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29677 (-130.2 uncal um), Max = 29688 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:06:21.354 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29684, posNoise = 4, negNoise = 7 17-03-18 07:06:21.354 -07 000000610 INF: Z Motor: After move to -0.131019, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:21.354 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 111 ms (allowed 150 ms), total time = 1561 ms 17-03-18 07:06:21.354 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:21.394 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms 17-03-18 07:06:21.394 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:21.394 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.131019665227167. ---------- 17-03-18 07:06:21.394 -07 000000610 INF: Cycle 157 Tile 9 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:21.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28444, sync = True, waitForSettling = True) 17-03-18 07:06:21.394 -07 000000610 INF: Z Motor: Moving to -0.130208 mm, started at -0.131020 mm, distance = 0.81 um 17-03-18 07:06:21.394 -07 000000610 INF: FPGA: Xmit ZDACW 28444\n [Z Motor] 17-03-18 07:06:21.404 -07 000000474 INF: FPGA: Recv ZDACW 17-03-18 07:06:21.404 -07 000000610 INF: FPGA: 'ZDACW 28444' command took 0 ms to send, 1 ms to get response, and 6 ms overall 17-03-18 07:06:21.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:21.404 -07 000000569 INF: FPGA: Recv ZDACR 28444 17-03-18 07:06:21.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:06:21.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:21.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.564 -07 000000581 INF: FPGA: Recv ZSGSRD 29559 17-03-18 07:06:21.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:21.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.574 -07 000000430 INF: FPGA: Recv ZSGSRD 29562 17-03-18 07:06:21.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.584 -07 000000561 INF: FPGA: Recv ZSGSRD 29556 17-03-18 07:06:21.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.594 -07 000000561 INF: FPGA: Recv ZSGSRD 29555 17-03-18 07:06:21.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.604 -07 000000625 INF: FPGA: Recv ZSGSRD 29556 17-03-18 07:06:21.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.614 -07 000000474 INF: FPGA: Recv ZSGSRD 29564 17-03-18 07:06:21.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.624 -07 000000625 INF: FPGA: Recv ZSGSRD 29561 17-03-18 07:06:21.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.634 -07 000000430 INF: FPGA: Recv ZSGSRD 29556 17-03-18 07:06:21.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.644 -07 000000437 INF: FPGA: Recv ZSGSRD 29558 17-03-18 07:06:21.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:21.654 -07 000000561 INF: FPGA: Recv ZSGSRD 29559 17-03-18 07:06:21.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:21.664 -07 000000591 INF: FPGA: Recv ZPIEZORD 25045 17-03-18 07:06:21.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:21.674 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.9 V. 17-03-18 07:06:21.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29559 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29558 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29555 (-129.4 uncal um), Max = 29564 (-129.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 07:06:21.674 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29559, posNoise = 5, negNoise = 4 17-03-18 07:06:21.674 -07 000000610 INF: Z Motor: After move to -0.130208, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:21.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 07:06:21.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:21.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:21.674 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:21.674 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:21.674 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:21.674 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:21.674 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:21.674 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:21.674 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:06:21.674 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:21.674 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:06:21.674 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:21.674 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 07:06:21.674 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:21.684 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:06:21.684 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:21.694 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 07:06:21.694 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms. 17-03-18 07:06:21.694 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 07:06:21.694 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 07:06:21.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28621 150\n [Camera] 17-03-18 07:06:21.894 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:21.924 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:06:21.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:06:22.374 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:22.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:22.374 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:22.374 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:22.374 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start. 17-03-18 07:06:22.374 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:22.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:22.374 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:22.374 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:22.374 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 07:06:22.564 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28621 859 17-03-18 07:06:22.714 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:22.754 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 377 ms. 17-03-18 07:06:22.754 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms. 17-03-18 07:06:22.754 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:22.754 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms. 17-03-18 07:06:22.754 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms. 17-03-18 07:06:22.754 -07 000000437 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:22.754 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:22.754 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 07:06:22.754 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:22.764 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-18 07:06:22.944 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:22.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:22.944 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:22.944 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:22.944 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-18 07:06:22.944 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:22.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:22.944 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:22.944 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:22.944 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-18 07:06:23.134 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1429 17-03-18 07:06:23.134 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:23.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28621 150' command took 2 ms to send, 1425 ms to get response, and 1436 ms overall 17-03-18 07:06:23.144 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 07:06:23.144 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.130216638709447. ------ 17-03-18 07:06:23.144 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:06:23.144 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13709 mm 17-03-18 07:06:23.144 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:23.144 -07 000000581 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:06:23.144 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True) 17-03-18 07:06:23.144 -07 000000437 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm 17-03-18 07:06:23.144 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 29947, sync = True, waitForSettling = False) 17-03-18 07:06:23.144 -07 000000474 INF: Z Motor: Moving to -0.137089 mm, started at -0.130217 mm, distance = -6.87 um 17-03-18 07:06:23.154 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:06:23.154 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:23.154 -07 000000581 INF: FPGA: Recv YRDPOS 136270 17-03-18 07:06:23.164 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:23.164 -07 000000437 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:23.164 -07 000000437 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:23.164 -07 000000437 INF: Y Motor: Moving 1351 steps-30 17-03-18 07:06:23.164 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 07:06:23.174 -07 000000474 INF: FPGA: Xmit ZDACW 29947\n [Z Motor] 17-03-18 07:06:23.174 -07 000000581 INF: FPGA: Recv ZDACW 17-03-18 07:06:23.184 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:23.184 -07 000000474 INF: FPGA: 'ZDACW 29947' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-18 07:06:23.194 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:23.194 -07 000000569 INF: FPGA: Recv ZDACR 29947 17-03-18 07:06:23.204 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:06:23.204 -07 000000474 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet)) 17-03-18 07:06:23.334 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 388 ms. 17-03-18 07:06:23.334 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 07:06:23.334 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:23.334 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms. 17-03-18 07:06:23.334 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-18 07:06:23.334 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:23.344 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:23.344 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:23.344 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 07:06:23.344 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 07:06:23.364 -07 000000569 INF: FPGA: Recv FOCMRRFOC 17-03-18 07:06:23.364 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall 17-03-18 07:06:23.554 -07 000000618 INF: FPGA: Recv YMVTILE 17-03-18 07:06:23.554 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:06:23.624 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:23.624 -07 000000569 INF: FPGA: Recv YRDPOS 137976 17-03-18 07:06:23.634 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:06:23.634 -07 000000437 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:23.634 -07 000000437 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm) 17-03-18 07:06:23.634 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.127 mm/sec 17-03-18 07:06:24.584 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:24.584 -07 000000430 INF: FPGA: Recv YRDPOS 137976 17-03-18 07:06:24.594 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:24.594 -07 000000437 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:24.624 -07 000000437 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:24.624 -07 000000437 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:24.624 -07 000000437 INF: Y Motor: Moved to 67.3711 after 1475 ms (table move) 17-03-18 07:06:24.624 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137089 mm (DAC = 29947) 17-03-18 07:06:24.624 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:24.634 -07 000000581 INF: FPGA: Recv ZSGSRD 30633 17-03-18 07:06:24.634 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-18 07:06:24.644 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:24.644 -07 000000474 INF: FPGA: Recv ZSGSRD 30627 17-03-18 07:06:24.654 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-18 07:06:24.654 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:24.654 -07 000000474 INF: FPGA: Recv ZSGSRD 30624 17-03-18 07:06:24.664 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:24.664 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:24.664 -07 000000606 INF: FPGA: Recv ZSGSRD 30625 17-03-18 07:06:24.674 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:24.674 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:24.674 -07 000000606 INF: FPGA: Recv ZSGSRD 30640 17-03-18 07:06:24.684 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:24.684 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:24.684 -07 000000606 INF: FPGA: Recv ZSGSRD 30631 17-03-18 07:06:24.694 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:24.694 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:24.694 -07 000000606 INF: FPGA: Recv ZSGSRD 30630 17-03-18 07:06:24.704 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:24.704 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:24.704 -07 000000606 INF: FPGA: Recv ZSGSRD 30632 17-03-18 07:06:24.714 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:24.714 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:24.714 -07 000000606 INF: FPGA: Recv ZSGSRD 30628 17-03-18 07:06:24.724 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:24.724 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:24.724 -07 000000606 INF: FPGA: Recv ZSGSRD 30634 17-03-18 07:06:24.734 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:24.734 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:24.734 -07 000000474 INF: FPGA: Recv ZPIEZORD 26459 17-03-18 07:06:24.744 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:24.744 -07 000000591 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.570 V. Piezo Error = -9.2 V. 17-03-18 07:06:24.744 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30630 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30630 (-136.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30624 (-136.3 uncal um), Max = 30640 (-136.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:06:24.744 -07 000000591 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30630, posNoise = 10, negNoise = 6 17-03-18 07:06:24.744 -07 000000591 INF: Z Motor: After move to -0.137089, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:24.744 -07 000000591 INF: Z Motor: Settle wait time = 1480 ms, measure time = 111 ms (allowed 150 ms), total time = 1591 ms 17-03-18 07:06:24.744 -07 000000591 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:24.784 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms 17-03-18 07:06:24.784 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:24.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:24.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:24.784 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:24.784 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:24.784 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 07:06:24.784 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:24.784 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:06:24.784 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 07:06:24.794 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 07:06:24.794 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 07:06:24.804 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 07:06:24.804 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-18 07:06:24.804 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 07:06:24.854 -07 000000474 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 07:06:24.954 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.02213, 17-03-18 07:06:25.154 -07 000000581 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 07:06:25.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 07:06:25.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 07:06:25.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start. 17-03-18 07:06:25.194 -07 000000437 INF: FPGA: Recv @CAMSNAP 380 17-03-18 07:06:25.194 -07 000000474 INF: FPGA: Recv CAMSNAP 17-03-18 07:06:25.194 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 6 ms to send, 376 ms to get response, and 390 ms overall 17-03-18 07:06:25.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 125 ms. 17-03-18 07:06:25.284 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:25.284 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 07:06:25.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-18 07:06:25.394 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:06:25.394 -07 000000430 INF: Autofocus start 17-03-18 07:06:25.394 -07 000000430 INF: MeasureProfile start 17-03-18 07:06:25.394 -07 000000625 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:06:25.404 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:06:25.404 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 07:06:25.404 -07 000000430 INF: MeasureProfile done 17-03-18 07:06:25.404 -07 000000430 INF: X=-16 Z correction [um]=-0.08128808 17-03-18 07:06:25.404 -07 000000430 INF: Autofocus finished 17-03-18 07:06:25.604 -07 000000618 INF: FPGA: Recv FOCMRRIMG 17-03-18 07:06:25.604 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 07:06:25.614 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.137096969913273. ---------- 17-03-18 07:06:25.614 -07 000000610 INF: Cycle 157 Tile 10 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:25.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28441, sync = True, waitForSettling = True) 17-03-18 07:06:25.614 -07 000000610 INF: Z Motor: Moving to -0.130195 mm, started at -0.137097 mm, distance = 6.90 um 17-03-18 07:06:25.614 -07 000000610 INF: FPGA: Xmit ZDACW 28441\n [Z Motor] 17-03-18 07:06:25.614 -07 000000474 INF: FPGA: Recv ZDACW 17-03-18 07:06:25.624 -07 000000610 INF: FPGA: 'ZDACW 28441' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:06:25.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:25.624 -07 000000591 INF: FPGA: Recv ZDACR 28441 17-03-18 07:06:25.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:25.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:25.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:25.784 -07 000000576 INF: FPGA: Recv ZSGSRD 29556 17-03-18 07:06:25.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:25.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:25.804 -07 000000591 INF: FPGA: Recv ZSGSRD 29559 17-03-18 07:06:25.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:06:25.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:25.824 -07 000000581 INF: FPGA: Recv ZSGSRD 29549 17-03-18 07:06:25.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:06:25.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:25.854 -07 000000430 INF: FPGA: Recv ZSGSRD 29557 17-03-18 07:06:25.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 07:06:25.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:25.874 -07 000000618 INF: FPGA: Recv ZSGSRD 29551 17-03-18 07:06:25.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:06:25.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:25.884 -07 000000576 INF: FPGA: Recv ZSGSRD 29559 17-03-18 07:06:25.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:25.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:25.894 -07 000000437 INF: FPGA: Recv ZSGSRD 29556 17-03-18 07:06:25.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:25.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:25.904 -07 000000576 INF: FPGA: Recv ZSGSRD 29555 17-03-18 07:06:25.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:25.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:25.914 -07 000000437 INF: FPGA: Recv ZSGSRD 29557 17-03-18 07:06:25.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:25.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:25.924 -07 000000474 INF: FPGA: Recv ZSGSRD 29555 17-03-18 07:06:25.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:25.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:25.934 -07 000000585 INF: FPGA: Recv ZPIEZORD 25049 17-03-18 07:06:25.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:25.944 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.9 V. 17-03-18 07:06:25.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29555 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29556 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29549 (-129.4 uncal um), Max = 29559 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:06:25.944 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29555, posNoise = 4, negNoise = 6 17-03-18 07:06:25.944 -07 000000610 INF: Z Motor: After move to -0.130195, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:25.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 327 ms) 17-03-18 07:06:25.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:25.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:25.944 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:25.944 -07 000000581 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:25.944 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:25.944 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:25.944 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:25.944 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:25.944 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-18 07:06:25.944 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:25.944 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 07:06:25.944 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:25.944 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 07:06:25.944 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:25.944 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 07:06:25.944 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:25.954 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-18 07:06:25.954 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms. 17-03-18 07:06:25.954 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 07:06:25.954 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms. 17-03-18 07:06:25.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28618 150\n [Camera] 17-03-18 07:06:26.154 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:26.634 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:26.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:26.634 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:26.634 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:26.634 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start. 17-03-18 07:06:26.634 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:26.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:26.634 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:26.634 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:26.634 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start. 17-03-18 07:06:26.824 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28618 859 17-03-18 07:06:26.924 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:06:26.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:06:26.974 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:27.014 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 383 ms. 17-03-18 07:06:27.014 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 07:06:27.014 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:27.014 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 380 ms. 17-03-18 07:06:27.014 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms. 17-03-18 07:06:27.014 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:27.024 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:27.024 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 07:06:27.024 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:27.034 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-18 07:06:27.204 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:27.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:27.204 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:27.204 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:27.204 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start. 17-03-18 07:06:27.204 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1238 17-03-18 07:06:27.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1238 17-03-18 07:06:27.204 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:27.204 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:27.204 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start. 17-03-18 07:06:27.394 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:06:27.394 -07 000000585 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:27.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28618 150' command took 3 ms to send, 1426 ms to get response, and 1436 ms overall 17-03-18 07:06:27.394 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.130538 17-03-18 07:06:27.394 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13054 mm 17-03-18 07:06:27.394 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:27.524 -07 000000581 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True) 17-03-18 07:06:27.524 -07 000000581 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm 17-03-18 07:06:27.524 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 28516, sync = True, waitForSettling = False) 17-03-18 07:06:27.524 -07 000000576 INF: Z Motor: Moving to -0.130538 mm, started at -0.130191 mm, distance = -0.35 um 17-03-18 07:06:27.534 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:27.534 -07 000000430 INF: FPGA: Recv YRDPOS 137976 17-03-18 07:06:27.544 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:27.544 -07 000000576 INF: FPGA: Xmit ZDACW 28516\n [Z Motor] 17-03-18 07:06:27.544 -07 000000581 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:27.544 -07 000000581 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:27.544 -07 000000581 INF: Y Motor: Moving 1346 steps-24 17-03-18 07:06:27.544 -07 000000430 INF: FPGA: Recv ZDACW 17-03-18 07:06:27.554 -07 000000576 INF: FPGA: 'ZDACW 28516' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:06:27.554 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:27.554 -07 000000585 INF: FPGA: Recv ZDACR 28516 17-03-18 07:06:27.564 -07 000000581 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:27.564 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:27.564 -07 000000576 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet)) 17-03-18 07:06:27.604 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 391 ms. 17-03-18 07:06:27.604 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-18 07:06:27.604 -07 000000591 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:27.604 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms. 17-03-18 07:06:27.604 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-18 07:06:27.604 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:27.604 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:27.614 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-18 07:06:27.614 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-18 07:06:27.614 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 07:06:27.934 -07 000000625 INF: FPGA: Recv YMVTILE 17-03-18 07:06:27.934 -07 000000581 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:06:27.994 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:27.994 -07 000000576 INF: FPGA: Recv YRDPOS 139682 17-03-18 07:06:28.004 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:06:28.004 -07 000000581 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:28.004 -07 000000581 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm) 17-03-18 07:06:28.004 -07 000000581 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.120 mm/sec 17-03-18 07:06:28.954 -07 000000581 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:28.954 -07 000000591 INF: FPGA: Recv YRDPOS 139682 17-03-18 07:06:28.964 -07 000000581 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:28.964 -07 000000581 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:28.994 -07 000000581 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:28.994 -07 000000581 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:28.994 -07 000000581 INF: Y Motor: Moved to 68.2041 after 1464 ms (table move) 17-03-18 07:06:28.994 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130538 mm (DAC = 28516) 17-03-18 07:06:28.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:28.994 -07 000000618 INF: FPGA: Recv ZSGSRD 29612 17-03-18 07:06:29.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:06:29.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.004 -07 000000591 INF: FPGA: Recv ZSGSRD 29617 17-03-18 07:06:29.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.014 -07 000000591 INF: FPGA: Recv ZSGSRD 29608 17-03-18 07:06:29.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.024 -07 000000591 INF: FPGA: Recv ZSGSRD 29603 17-03-18 07:06:29.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.034 -07 000000591 INF: FPGA: Recv ZSGSRD 29609 17-03-18 07:06:29.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.044 -07 000000591 INF: FPGA: Recv ZSGSRD 29611 17-03-18 07:06:29.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.054 -07 000000591 INF: FPGA: Recv ZSGSRD 29605 17-03-18 07:06:29.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.064 -07 000000591 INF: FPGA: Recv ZSGSRD 29614 17-03-18 07:06:29.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.074 -07 000000591 INF: FPGA: Recv ZSGSRD 29608 17-03-18 07:06:29.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.084 -07 000000437 INF: FPGA: Recv ZSGSRD 29615 17-03-18 07:06:29.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:29.094 -07 000000591 INF: FPGA: Recv ZPIEZORD 25157 17-03-18 07:06:29.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.104 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -9.8 V. 17-03-18 07:06:29.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29610 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29610 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29603 (-129.7 uncal um), Max = 29617 (-129.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:06:29.104 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29610, posNoise = 7, negNoise = 7 17-03-18 07:06:29.104 -07 000000610 INF: Z Motor: After move to -0.130538, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:29.104 -07 000000610 INF: Z Motor: Settle wait time = 1466 ms, measure time = 104 ms (allowed 150 ms), total time = 1570 ms 17-03-18 07:06:29.104 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:29.154 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1751 ms 17-03-18 07:06:29.154 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:29.154 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.130544273528677. ---------- 17-03-18 07:06:29.154 -07 000000610 INF: Cycle 157 Tile 11 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:29.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28339, sync = True, waitForSettling = True) 17-03-18 07:06:29.154 -07 000000610 INF: Z Motor: Moving to -0.129728 mm, started at -0.130544 mm, distance = 0.82 um 17-03-18 07:06:29.154 -07 000000610 INF: FPGA: Xmit ZDACW 28339\n [Z Motor] 17-03-18 07:06:29.154 -07 000000625 INF: FPGA: Recv ZDACW 17-03-18 07:06:29.164 -07 000000610 INF: FPGA: 'ZDACW 28339' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 07:06:29.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:29.164 -07 000000430 INF: FPGA: Recv ZDACR 28339 17-03-18 07:06:29.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:29.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.324 -07 000000430 INF: FPGA: Recv ZSGSRD 29487 17-03-18 07:06:29.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.334 -07 000000437 INF: FPGA: Recv ZSGSRD 29477 17-03-18 07:06:29.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.344 -07 000000430 INF: FPGA: Recv ZSGSRD 29482 17-03-18 07:06:29.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.354 -07 000000430 INF: FPGA: Recv ZSGSRD 29477 17-03-18 07:06:29.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.364 -07 000000430 INF: FPGA: Recv ZSGSRD 29488 17-03-18 07:06:29.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.374 -07 000000430 INF: FPGA: Recv ZSGSRD 29494 17-03-18 07:06:29.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.384 -07 000000430 INF: FPGA: Recv ZSGSRD 29485 17-03-18 07:06:29.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.394 -07 000000430 INF: FPGA: Recv ZSGSRD 29486 17-03-18 07:06:29.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.404 -07 000000430 INF: FPGA: Recv ZSGSRD 29480 17-03-18 07:06:29.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:29.414 -07 000000430 INF: FPGA: Recv ZSGSRD 29480 17-03-18 07:06:29.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:29.424 -07 000000618 INF: FPGA: Recv ZPIEZORD 25004 17-03-18 07:06:29.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:29.434 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.8 V. 17-03-18 07:06:29.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29484 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29484 (-129.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29477 (-128.9 uncal um), Max = 29494 (-129.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:06:29.434 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29484, posNoise = 10, negNoise = 7 17-03-18 07:06:29.434 -07 000000610 INF: Z Motor: After move to -0.129728, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:29.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms) 17-03-18 07:06:29.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:29.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:29.434 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:29.434 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:29.434 -07 000000625 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:29.434 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:29.444 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:29.444 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:29.444 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-18 07:06:29.444 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:29.444 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:06:29.444 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:29.444 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-18 07:06:29.444 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:29.444 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 07:06:29.444 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:29.454 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms. 17-03-18 07:06:29.454 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:06:29.454 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-18 07:06:29.454 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 07:06:29.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28516 150\n [Camera] 17-03-18 07:06:29.664 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:30.134 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:30.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:30.134 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:30.134 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:30.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:30.134 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:30.144 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:30.144 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:06:30.144 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:30.144 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-18 07:06:30.314 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.008536, 17-03-18 07:06:30.324 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28516 859 17-03-18 07:06:30.474 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:30.514 -07 000000585 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 371 ms. 17-03-18 07:06:30.514 -07 000000585 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms. 17-03-18 07:06:30.514 -07 000000585 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:30.524 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:30.524 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms. 17-03-18 07:06:30.524 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms. 17-03-18 07:06:30.524 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:30.524 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:30.524 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 07:06:30.524 -07 000000585 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 07:06:30.704 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:30.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:30.704 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:30.704 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:30.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:30.714 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:30.714 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:30.714 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start. 17-03-18 07:06:30.714 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:30.714 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 07:06:30.894 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP 1429 17-03-18 07:06:30.894 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:30.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28516 150' command took 2 ms to send, 1427 ms to get response, and 1436 ms overall 17-03-18 07:06:30.894 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.130264 17-03-18 07:06:30.904 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13026 mm 17-03-18 07:06:30.904 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:30.904 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True) 17-03-18 07:06:30.904 -07 000000618 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm 17-03-18 07:06:30.904 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 28456, sync = True, waitForSettling = False) 17-03-18 07:06:30.904 -07 000000591 INF: Z Motor: Moving to -0.130263 mm, started at -0.129735 mm, distance = -0.53 um 17-03-18 07:06:30.904 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:30.904 -07 000000576 INF: FPGA: Recv YRDPOS 139682 17-03-18 07:06:30.914 -07 000000618 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:06:30.914 -07 000000618 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:30.914 -07 000000618 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:30.914 -07 000000618 INF: Y Motor: Moving 1342 steps-17 17-03-18 07:06:30.914 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:30.924 -07 000000591 INF: FPGA: Xmit ZDACW 28456\n [Z Motor] 17-03-18 07:06:30.924 -07 000000437 INF: FPGA: Recv ZDACW 17-03-18 07:06:30.934 -07 000000591 INF: FPGA: 'ZDACW 28456' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-18 07:06:30.934 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:30.934 -07 000000626 INF: FPGA: Recv ZDACR 28456 17-03-18 07:06:30.944 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:30.944 -07 000000591 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-18 07:06:31.094 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 380 ms. 17-03-18 07:06:31.094 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-18 07:06:31.094 -07 000000585 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:31.094 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms. 17-03-18 07:06:31.094 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms. 17-03-18 07:06:31.094 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:31.094 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:31.094 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-18 07:06:31.094 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:31.104 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-18 07:06:31.284 -07 000000626 INF: FPGA: Recv YMVTILE 17-03-18 07:06:31.284 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall 17-03-18 07:06:31.344 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:31.344 -07 000000625 INF: FPGA: Recv YRDPOS 141365 17-03-18 07:06:31.354 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:06:31.354 -07 000000618 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:31.354 -07 000000618 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm) 17-03-18 07:06:31.354 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.218 mm/sec 17-03-18 07:06:31.924 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:06:31.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:06:32.304 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:32.304 -07 000000626 INF: FPGA: Recv YRDPOS 141365 17-03-18 07:06:32.314 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:32.314 -07 000000618 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:32.344 -07 000000618 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:32.344 -07 000000618 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:32.344 -07 000000618 INF: Y Motor: Moved to 69.0259 after 1440 ms (table move) 17-03-18 07:06:32.344 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130263 mm (DAC = 28456) 17-03-18 07:06:32.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.354 -07 000000430 INF: FPGA: Recv ZSGSRD 29569 17-03-18 07:06:32.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 07:06:32.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.354 -07 000000576 INF: FPGA: Recv ZSGSRD 29564 17-03-18 07:06:32.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.364 -07 000000591 INF: FPGA: Recv ZSGSRD 29562 17-03-18 07:06:32.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.374 -07 000000625 INF: FPGA: Recv ZSGSRD 29571 17-03-18 07:06:32.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.384 -07 000000618 INF: FPGA: Recv ZSGSRD 29567 17-03-18 07:06:32.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.394 -07 000000576 INF: FPGA: Recv ZSGSRD 29576 17-03-18 07:06:32.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.404 -07 000000591 INF: FPGA: Recv ZSGSRD 29563 17-03-18 07:06:32.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.414 -07 000000626 INF: FPGA: Recv ZSGSRD 29566 17-03-18 07:06:32.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.424 -07 000000430 INF: FPGA: Recv ZSGSRD 29562 17-03-18 07:06:32.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.434 -07 000000625 INF: FPGA: Recv ZSGSRD 29570 17-03-18 07:06:32.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:32.444 -07 000000581 INF: FPGA: Recv ZPIEZORD 25156 17-03-18 07:06:32.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.454 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.342 V. Piezo Error = -9.7 V. 17-03-18 07:06:32.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29567 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29566 (-129.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29562 (-129.5 uncal um), Max = 29576 (-129.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 07:06:32.454 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29567, posNoise = 9, negNoise = 5 17-03-18 07:06:32.454 -07 000000610 INF: Z Motor: After move to -0.130263, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:32.454 -07 000000610 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms 17-03-18 07:06:32.454 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:32.504 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms 17-03-18 07:06:32.504 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:32.504 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.130268032406581. ---------- 17-03-18 07:06:32.504 -07 000000610 INF: Cycle 157 Tile 12 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:32.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28279, sync = True, waitForSettling = True) 17-03-18 07:06:32.504 -07 000000610 INF: Z Motor: Moving to -0.129453 mm, started at -0.130268 mm, distance = 0.82 um 17-03-18 07:06:32.504 -07 000000610 INF: FPGA: Xmit ZDACW 28279\n [Z Motor] 17-03-18 07:06:32.504 -07 000000430 INF: FPGA: Recv ZDACW 17-03-18 07:06:32.514 -07 000000610 INF: FPGA: 'ZDACW 28279' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:06:32.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:32.514 -07 000000625 INF: FPGA: Recv ZDACR 28279 17-03-18 07:06:32.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:32.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.674 -07 000000581 INF: FPGA: Recv ZSGSRD 29439 17-03-18 07:06:32.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:32.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.684 -07 000000625 INF: FPGA: Recv ZSGSRD 29442 17-03-18 07:06:32.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.694 -07 000000430 INF: FPGA: Recv ZSGSRD 29447 17-03-18 07:06:32.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.704 -07 000000430 INF: FPGA: Recv ZSGSRD 29430 17-03-18 07:06:32.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.714 -07 000000591 INF: FPGA: Recv ZSGSRD 29449 17-03-18 07:06:32.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.724 -07 000000625 INF: FPGA: Recv ZSGSRD 29451 17-03-18 07:06:32.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.734 -07 000000576 INF: FPGA: Recv ZSGSRD 29435 17-03-18 07:06:32.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.744 -07 000000430 INF: FPGA: Recv ZSGSRD 29442 17-03-18 07:06:32.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.754 -07 000000625 INF: FPGA: Recv ZSGSRD 29443 17-03-18 07:06:32.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:32.764 -07 000000430 INF: FPGA: Recv ZSGSRD 29442 17-03-18 07:06:32.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:32.774 -07 000000591 INF: FPGA: Recv ZPIEZORD 24927 17-03-18 07:06:32.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:32.784 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.315 V. Piezo Error = -9.9 V. 17-03-18 07:06:32.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29442 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29442 (-128.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29430 (-128.6 uncal um), Max = 29451 (-128.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um) 17-03-18 07:06:32.784 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29442, posNoise = 9, negNoise = 12 17-03-18 07:06:32.784 -07 000000610 INF: Z Motor: After move to -0.129453, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:32.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 07:06:32.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:32.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:32.784 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:32.784 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:32.784 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:32.784 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:32.784 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:06:32.784 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:32.784 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:32.784 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:32.784 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:06:32.784 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:32.794 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:06:32.794 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:32.794 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:06:32.794 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:32.804 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 07:06:32.804 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-18 07:06:32.804 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 07:06:32.804 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:06:32.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28456 150\n [Camera] 17-03-18 07:06:33.004 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:33.484 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:33.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:33.484 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:33.484 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:33.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:33.484 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:33.604 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:33.604 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-18 07:06:33.604 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:33.604 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-18 07:06:33.674 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28456 859 17-03-18 07:06:33.824 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:33.974 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 374 ms. 17-03-18 07:06:33.974 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms. 17-03-18 07:06:33.974 -07 000000591 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:33.974 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 370 ms. 17-03-18 07:06:33.974 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms. 17-03-18 07:06:33.974 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:33.984 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:33.984 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 498 ms. 17-03-18 07:06:33.984 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:33.994 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms. 17-03-18 07:06:34.054 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:34.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:34.054 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:34.054 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:34.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:34.064 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:34.064 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:34.064 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-18 07:06:34.064 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:34.064 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-18 07:06:34.244 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:06:34.244 -07 000000625 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:34.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28456 150' command took 2 ms to send, 1426 ms to get response, and 1436 ms overall 17-03-18 07:06:34.244 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.129926 17-03-18 07:06:34.244 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.12993 mm 17-03-18 07:06:34.244 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:34.254 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True) 17-03-18 07:06:34.254 -07 000000576 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm 17-03-18 07:06:34.254 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:34.254 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 28382, sync = True, waitForSettling = False) 17-03-18 07:06:34.254 -07 000000430 INF: Z Motor: Moving to -0.129924 mm, started at -0.129465 mm, distance = -0.46 um 17-03-18 07:06:34.254 -07 000000591 INF: FPGA: Recv YRDPOS 141365 17-03-18 07:06:34.264 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:34.264 -07 000000430 INF: FPGA: Xmit ZDACW 28382\n [Z Motor] 17-03-18 07:06:34.264 -07 000000576 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:34.264 -07 000000576 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:34.264 -07 000000576 INF: Y Motor: Moving 1355 steps-34 17-03-18 07:06:34.264 -07 000000512 INF: FPGA: Recv ZDACW 17-03-18 07:06:34.274 -07 000000430 INF: FPGA: 'ZDACW 28382' command took 2 ms to send, 0 ms to get response, and 18 ms overall 17-03-18 07:06:34.274 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:34.274 -07 000000618 INF: FPGA: Recv ZDACR 28382 17-03-18 07:06:34.284 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:34.284 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:34.284 -07 000000430 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet)) 17-03-18 07:06:34.434 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 376 ms. 17-03-18 07:06:34.434 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms. 17-03-18 07:06:34.434 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:34.434 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 373 ms. 17-03-18 07:06:34.434 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms. 17-03-18 07:06:34.434 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:34.444 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:34.444 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-18 07:06:34.444 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:34.454 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-18 07:06:34.654 -07 000000618 INF: FPGA: Recv YMVTILE 17-03-18 07:06:34.654 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall 17-03-18 07:06:34.714 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:34.714 -07 000000625 INF: FPGA: Recv YRDPOS 143078 17-03-18 07:06:34.724 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:06:34.724 -07 000000576 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:34.724 -07 000000576 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm) 17-03-18 07:06:34.724 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.847 mm, average velocity = 2.144 mm/sec 17-03-18 07:06:35.684 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:35.684 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.978563, 17-03-18 07:06:35.684 -07 000000625 INF: FPGA: Recv YRDPOS 143078 17-03-18 07:06:35.694 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:06:35.694 -07 000000576 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:35.724 -07 000000576 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:35.724 -07 000000576 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:35.724 -07 000000576 INF: Y Motor: Moved to 69.8623 after 1475 ms (table move) 17-03-18 07:06:35.724 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129924 mm (DAC = 28382) 17-03-18 07:06:35.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:35.734 -07 000000474 INF: FPGA: Recv ZSGSRD 29510 17-03-18 07:06:35.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 07:06:35.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:35.744 -07 000000576 INF: FPGA: Recv ZSGSRD 29517 17-03-18 07:06:35.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:35.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:35.754 -07 000000576 INF: FPGA: Recv ZSGSRD 29512 17-03-18 07:06:35.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:35.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:35.764 -07 000000591 INF: FPGA: Recv ZSGSRD 29513 17-03-18 07:06:35.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:35.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:35.774 -07 000000576 INF: FPGA: Recv ZSGSRD 29515 17-03-18 07:06:35.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:35.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:35.784 -07 000000591 INF: FPGA: Recv ZSGSRD 29514 17-03-18 07:06:35.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:35.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:35.794 -07 000000591 INF: FPGA: Recv ZSGSRD 29522 17-03-18 07:06:35.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:35.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:35.804 -07 000000576 INF: FPGA: Recv ZSGSRD 29506 17-03-18 07:06:35.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:35.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:35.814 -07 000000626 INF: FPGA: Recv ZSGSRD 29513 17-03-18 07:06:35.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:35.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:35.824 -07 000000576 INF: FPGA: Recv ZSGSRD 29515 17-03-18 07:06:35.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:35.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:35.834 -07 000000626 INF: FPGA: Recv ZPIEZORD 25051 17-03-18 07:06:35.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:35.844 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.8 V. 17-03-18 07:06:35.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29514 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29514 (-129.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29506 (-129.1 uncal um), Max = 29522 (-129.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-18 07:06:35.844 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29514, posNoise = 8, negNoise = 8 17-03-18 07:06:35.844 -07 000000610 INF: Z Motor: After move to -0.129924, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:35.844 -07 000000610 INF: Z Motor: Settle wait time = 1477 ms, measure time = 112 ms (allowed 150 ms), total time = 1589 ms 17-03-18 07:06:35.844 -07 000000610 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:35.884 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms 17-03-18 07:06:35.884 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:35.884 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.129927549163068. ---------- 17-03-18 07:06:35.884 -07 000000610 INF: Cycle 157 Tile 13 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:35.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28206, sync = True, waitForSettling = True) 17-03-18 07:06:35.884 -07 000000610 INF: Z Motor: Moving to -0.129119 mm, started at -0.129928 mm, distance = 0.81 um 17-03-18 07:06:35.884 -07 000000610 INF: FPGA: Xmit ZDACW 28206\n [Z Motor] 17-03-18 07:06:35.884 -07 000000625 INF: FPGA: Recv ZDACW 17-03-18 07:06:35.894 -07 000000610 INF: FPGA: 'ZDACW 28206' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:06:35.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:35.894 -07 000000512 INF: FPGA: Recv ZDACR 28206 17-03-18 07:06:35.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:35.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:36.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:36.054 -07 000000512 INF: FPGA: Recv ZSGSRD 29388 17-03-18 07:06:36.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:36.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:36.064 -07 000000608 INF: FPGA: Recv ZSGSRD 29385 17-03-18 07:06:36.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:36.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:36.074 -07 000000512 INF: FPGA: Recv ZSGSRD 29386 17-03-18 07:06:36.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:36.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:36.084 -07 000000512 INF: FPGA: Recv ZSGSRD 29387 17-03-18 07:06:36.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:36.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:36.094 -07 000000512 INF: FPGA: Recv ZSGSRD 29390 17-03-18 07:06:36.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:36.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:36.104 -07 000000512 INF: FPGA: Recv ZSGSRD 29388 17-03-18 07:06:36.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:36.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:36.114 -07 000000512 INF: FPGA: Recv ZSGSRD 29394 17-03-18 07:06:36.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:36.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:36.124 -07 000000576 INF: FPGA: Recv ZSGSRD 29392 17-03-18 07:06:36.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:36.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:36.134 -07 000000512 INF: FPGA: Recv ZSGSRD 29388 17-03-18 07:06:36.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:36.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:36.144 -07 000000576 INF: FPGA: Recv ZSGSRD 29388 17-03-18 07:06:36.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:36.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:36.154 -07 000000512 INF: FPGA: Recv ZPIEZORD 24893 17-03-18 07:06:36.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:36.164 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.304 V. Piezo Error = -9.9 V. 17-03-18 07:06:36.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29389 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29388 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29385 (-128.3 uncal um), Max = 29394 (-128.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 07:06:36.164 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29389, posNoise = 5, negNoise = 4 17-03-18 07:06:36.164 -07 000000610 INF: Z Motor: After move to -0.129119, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:36.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms) 17-03-18 07:06:36.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:36.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:36.164 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:36.164 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:36.164 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:36.164 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:36.164 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:06:36.164 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:36.164 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:36.164 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:36.164 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:06:36.164 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:36.174 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:06:36.174 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:36.174 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-18 07:06:36.174 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:36.184 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 07:06:36.184 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 07:06:36.184 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-18 07:06:36.184 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:06:36.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28382 150\n [Camera] 17-03-18 07:06:36.394 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:36.864 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:36.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:36.864 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:36.864 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:36.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:36.864 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:36.864 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:36.864 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start. 17-03-18 07:06:36.874 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:36.874 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 07:06:36.924 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:06:36.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:06:37.054 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28382 861 17-03-18 07:06:37.204 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:37.244 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms. 17-03-18 07:06:37.244 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms. 17-03-18 07:06:37.244 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:37.244 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 376 ms. 17-03-18 07:06:37.244 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms. 17-03-18 07:06:37.244 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:37.244 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:37.244 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-18 07:06:37.254 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:37.254 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 07:06:37.434 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:37.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:37.434 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:37.434 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:37.434 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 07:06:37.434 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:37.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:37.434 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:37.564 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:37.564 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-18 07:06:37.624 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:06:37.624 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:37.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28382 150' command took 2 ms to send, 1427 ms to get response, and 1436 ms overall 17-03-18 07:06:37.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 07:06:37.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.129124522645348. ------ 17-03-18 07:06:37.634 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:06:37.634 -07 000000625 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13555 mm 17-03-18 07:06:37.634 -07 000000625 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:37.634 -07 000000591 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:06:37.634 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True) 17-03-18 07:06:37.634 -07 000000576 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm 17-03-18 07:06:37.634 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29611, sync = True, waitForSettling = False) 17-03-18 07:06:37.634 -07 000000608 INF: Z Motor: Moving to -0.135550 mm, started at -0.129125 mm, distance = -6.43 um 17-03-18 07:06:37.644 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:06:37.644 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:37.644 -07 000000474 INF: FPGA: Recv YRDPOS 143078 17-03-18 07:06:37.654 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 07:06:37.654 -07 000000576 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:37.654 -07 000000576 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:37.654 -07 000000576 INF: Y Motor: Moving 1344 steps-21 17-03-18 07:06:37.654 -07 000000608 INF: FPGA: Xmit ZDACW 29611\n [Z Motor] 17-03-18 07:06:37.654 -07 000000474 INF: FPGA: Recv ZDACW 17-03-18 07:06:37.664 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 07:06:37.664 -07 000000608 INF: FPGA: 'ZDACW 29611' command took 1 ms to send, 0 ms to get response, and 21 ms overall 17-03-18 07:06:37.674 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:37.684 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:37.684 -07 000000591 INF: FPGA: Recv ZDACR 29611 17-03-18 07:06:37.694 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 07:06:37.694 -07 000000608 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet)) 17-03-18 07:06:37.824 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms. 17-03-18 07:06:37.824 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 07:06:37.824 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:37.824 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:37.824 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-18 07:06:37.864 -07 000000626 INF: FPGA: Recv FOCMRRFOC 17-03-18 07:06:37.864 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 07:06:37.934 -07 000000581 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms. 17-03-18 07:06:37.934 -07 000000581 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms. 17-03-18 07:06:37.934 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:37.934 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:37.944 -07 000000581 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms. 17-03-18 07:06:38.044 -07 000000581 INF: FPGA: Recv YMVTILE 17-03-18 07:06:38.044 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:06:38.104 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:38.104 -07 000000626 INF: FPGA: Recv YRDPOS 144767 17-03-18 07:06:38.114 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:06:38.114 -07 000000576 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:38.114 -07 000000576 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm) 17-03-18 07:06:38.114 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.117 mm/sec 17-03-18 07:06:39.064 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:39.064 -07 000000581 INF: FPGA: Recv YRDPOS 144768 17-03-18 07:06:39.074 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:39.074 -07 000000576 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:39.104 -07 000000576 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:39.104 -07 000000576 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 07:06:39.104 -07 000000576 INF: Y Motor: Moved to 70.6875 after 1464 ms (table move) 17-03-18 07:06:39.104 -07 000000625 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135550 mm (DAC = 29611) 17-03-18 07:06:39.104 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:39.104 -07 000000626 INF: FPGA: Recv ZSGSRD 30396 17-03-18 07:06:39.114 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 07:06:39.114 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:39.114 -07 000000591 INF: FPGA: Recv ZSGSRD 30389 17-03-18 07:06:39.124 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:39.124 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:39.124 -07 000000608 INF: FPGA: Recv ZSGSRD 30392 17-03-18 07:06:39.134 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:39.134 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:39.134 -07 000000591 INF: FPGA: Recv ZSGSRD 30386 17-03-18 07:06:39.144 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:39.144 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:39.144 -07 000000474 INF: FPGA: Recv ZSGSRD 30390 17-03-18 07:06:39.154 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:39.154 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:39.154 -07 000000608 INF: FPGA: Recv ZSGSRD 30388 17-03-18 07:06:39.164 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:39.164 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:39.164 -07 000000576 INF: FPGA: Recv ZSGSRD 30389 17-03-18 07:06:39.174 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:39.174 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:39.174 -07 000000591 INF: FPGA: Recv ZSGSRD 30394 17-03-18 07:06:39.184 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:39.184 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:39.184 -07 000000618 INF: FPGA: Recv ZSGSRD 30393 17-03-18 07:06:39.194 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:39.194 -07 000000625 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:39.194 -07 000000591 INF: FPGA: Recv ZSGSRD 30392 17-03-18 07:06:39.204 -07 000000625 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:39.204 -07 000000625 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:39.204 -07 000000474 INF: FPGA: Recv ZPIEZORD 26203 17-03-18 07:06:39.214 -07 000000625 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:39.214 -07 000000625 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.518 V. Piezo Error = -9.2 V. 17-03-18 07:06:39.214 -07 000000625 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30391 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30391 (-134.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30386 (-134.7 uncal um), Max = 30396 (-134.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 07:06:39.214 -07 000000625 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30391, posNoise = 5, negNoise = 5 17-03-18 07:06:39.214 -07 000000625 INF: Z Motor: After move to -0.135550, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:39.214 -07 000000625 INF: Z Motor: Settle wait time = 1468 ms, measure time = 104 ms (allowed 150 ms), total time = 1572 ms 17-03-18 07:06:39.214 -07 000000625 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:39.264 -07 000000625 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms 17-03-18 07:06:39.264 -07 000000625 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:39.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:39.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:39.264 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:39.264 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:39.264 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 07:06:39.264 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:39.264 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:06:39.264 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 07:06:39.274 -07 000000474 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 07:06:39.274 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 07:06:39.284 -07 000000474 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 07:06:39.284 -07 000000474 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-18 07:06:39.284 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 07:06:39.334 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 07:06:39.634 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 07:06:39.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 07:06:39.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 07:06:39.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-18 07:06:39.674 -07 000000576 INF: FPGA: Recv @CAMSNAP 380 17-03-18 07:06:39.674 -07 000000474 INF: FPGA: Recv CAMSNAP 17-03-18 07:06:39.674 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall 17-03-18 07:06:39.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms. 17-03-18 07:06:39.764 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:39.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-18 07:06:39.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-18 07:06:39.774 -07 000000608 INF: Autofocus start 17-03-18 07:06:39.774 -07 000000608 INF: MeasureProfile start 17-03-18 07:06:39.774 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:06:39.774 -07 000000581 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:06:39.784 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:06:39.784 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 07:06:39.784 -07 000000608 INF: MeasureProfile done 17-03-18 07:06:39.784 -07 000000608 INF: X=64 Z correction [um]=0.2839165 17-03-18 07:06:39.784 -07 000000608 INF: Autofocus finished 17-03-18 07:06:39.984 -07 000000474 INF: FPGA: Recv FOCMRRIMG 17-03-18 07:06:39.984 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 07:06:39.984 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.135561583211392. ---------- 17-03-18 07:06:39.984 -07 000000610 INF: Cycle 157 Tile 14 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:39.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28186, sync = True, waitForSettling = True) 17-03-18 07:06:39.994 -07 000000610 INF: Z Motor: Moving to -0.129027 mm, started at -0.135562 mm, distance = 6.53 um 17-03-18 07:06:39.994 -07 000000610 INF: FPGA: Xmit ZDACW 28186\n [Z Motor] 17-03-18 07:06:39.994 -07 000000626 INF: FPGA: Recv ZDACW 17-03-18 07:06:40.004 -07 000000610 INF: FPGA: 'ZDACW 28186' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:06:40.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:40.004 -07 000000608 INF: FPGA: Recv ZDACR 28186 17-03-18 07:06:40.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:40.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:40.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:40.164 -07 000000626 INF: FPGA: Recv ZSGSRD 29377 17-03-18 07:06:40.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:40.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:40.174 -07 000000608 INF: FPGA: Recv ZSGSRD 29372 17-03-18 07:06:40.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:40.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:40.184 -07 000000626 INF: FPGA: Recv ZSGSRD 29375 17-03-18 07:06:40.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:40.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:40.194 -07 000000581 INF: FPGA: Recv ZSGSRD 29377 17-03-18 07:06:40.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:40.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:40.204 -07 000000474 INF: FPGA: Recv ZSGSRD 29376 17-03-18 07:06:40.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:40.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:40.214 -07 000000606 INF: FPGA: Recv ZSGSRD 29378 17-03-18 07:06:40.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:40.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:40.224 -07 000000576 INF: FPGA: Recv ZSGSRD 29375 17-03-18 07:06:40.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:40.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:40.234 -07 000000581 INF: FPGA: Recv ZSGSRD 29373 17-03-18 07:06:40.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:40.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:40.244 -07 000000626 INF: FPGA: Recv ZSGSRD 29373 17-03-18 07:06:40.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:40.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:40.254 -07 000000618 INF: FPGA: Recv ZSGSRD 29373 17-03-18 07:06:40.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:40.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:40.264 -07 000000626 INF: FPGA: Recv ZPIEZORD 24890 17-03-18 07:06:40.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:40.274 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -9.8 V. 17-03-18 07:06:40.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29375 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29375 (-128.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29372 (-128.2 uncal um), Max = 29378 (-128.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-18 07:06:40.274 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29375, posNoise = 3, negNoise = 3 17-03-18 07:06:40.274 -07 000000610 INF: Z Motor: After move to -0.129027, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:40.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-18 07:06:40.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:40.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:40.274 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:40.274 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:40.274 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:40.274 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:40.274 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:40.274 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:40.274 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:06:40.274 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:40.274 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:06:40.274 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:40.284 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:06:40.284 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:40.284 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 07:06:40.284 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:40.284 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 07:06:40.294 -07 000000581 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 07:06:40.294 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 07:06:40.294 -07 000000625 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 07:06:40.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28362 150\n [Camera] 17-03-18 07:06:40.494 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:40.964 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:40.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:40.964 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:40.964 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:40.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:40.974 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:40.974 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-18 07:06:40.974 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:40.974 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:40.974 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-18 07:06:41.054 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.981281, 17-03-18 07:06:41.164 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28362 860 17-03-18 07:06:41.304 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:41.344 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 374 ms. 17-03-18 07:06:41.344 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms. 17-03-18 07:06:41.344 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:41.344 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 371 ms. 17-03-18 07:06:41.344 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms. 17-03-18 07:06:41.344 -07 000000591 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:41.354 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:41.354 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-18 07:06:41.354 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:41.364 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-18 07:06:41.534 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:41.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:41.534 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:41.544 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:41.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:41.544 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:41.544 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:41.544 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 07:06:41.544 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:41.544 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-18 07:06:41.724 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:06:41.724 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:41.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28362 150' command took 2 ms to send, 1429 ms to get response, and 1437 ms overall 17-03-18 07:06:41.734 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129665 17-03-18 07:06:41.734 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12966 mm 17-03-18 07:06:41.734 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:41.734 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True) 17-03-18 07:06:41.734 -07 000000626 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm 17-03-18 07:06:41.734 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:41.854 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 28325, sync = True, waitForSettling = False) 17-03-18 07:06:41.854 -07 000000608 INF: Z Motor: Moving to -0.129664 mm, started at -0.129035 mm, distance = -0.63 um 17-03-18 07:06:41.854 -07 000000606 INF: FPGA: Recv YRDPOS 144768 17-03-18 07:06:41.864 -07 000000626 INF: FPGA: 'YRDPOS' command took 121 ms to send, 0 ms to get response, and 125 ms overall 17-03-18 07:06:41.864 -07 000000626 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:41.864 -07 000000608 INF: FPGA: Xmit ZDACW 28325\n [Z Motor] 17-03-18 07:06:41.864 -07 000000626 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:41.864 -07 000000626 INF: Y Motor: Moving 1352 steps-32 17-03-18 07:06:41.864 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 07:06:41.874 -07 000000608 INF: FPGA: 'ZDACW 28325' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 07:06:41.874 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:41.874 -07 000000569 INF: FPGA: Recv ZDACR 28325 17-03-18 07:06:41.884 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:41.884 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:41.884 -07 000000608 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet)) 17-03-18 07:06:41.924 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:06:41.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:06:41.934 -07 000000625 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 384 ms. 17-03-18 07:06:41.934 -07 000000625 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-18 07:06:41.934 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:41.934 -07 000000581 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms. 17-03-18 07:06:41.934 -07 000000581 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-18 07:06:41.934 -07 000000581 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:41.934 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:41.934 -07 000000581 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:41.934 -07 000000581 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-18 07:06:41.944 -07 000000625 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-18 07:06:42.254 -07 000000569 INF: FPGA: Recv YMVTILE 17-03-18 07:06:42.254 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:06:42.314 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:42.314 -07 000000591 INF: FPGA: Recv YRDPOS 146468 17-03-18 07:06:42.324 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:06:42.324 -07 000000626 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:42.324 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-18 07:06:42.324 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec 17-03-18 07:06:43.274 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:43.274 -07 000000569 INF: FPGA: Recv YRDPOS 146468 17-03-18 07:06:43.284 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:43.284 -07 000000626 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:43.314 -07 000000626 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:43.314 -07 000000626 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:43.314 -07 000000626 INF: Y Motor: Moved to 71.5176 after 1579 ms (table move) 17-03-18 07:06:43.314 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129664 mm (DAC = 28325) 17-03-18 07:06:43.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.314 -07 000000591 INF: FPGA: Recv ZSGSRD 29472 17-03-18 07:06:43.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:06:43.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.324 -07 000000625 INF: FPGA: Recv ZSGSRD 29471 17-03-18 07:06:43.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.334 -07 000000581 INF: FPGA: Recv ZSGSRD 29473 17-03-18 07:06:43.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.344 -07 000000625 INF: FPGA: Recv ZSGSRD 29478 17-03-18 07:06:43.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.354 -07 000000591 INF: FPGA: Recv ZSGSRD 29468 17-03-18 07:06:43.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.364 -07 000000581 INF: FPGA: Recv ZSGSRD 29474 17-03-18 07:06:43.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.374 -07 000000591 INF: FPGA: Recv ZSGSRD 29472 17-03-18 07:06:43.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.384 -07 000000618 INF: FPGA: Recv ZSGSRD 29475 17-03-18 07:06:43.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.394 -07 000000625 INF: FPGA: Recv ZSGSRD 29479 17-03-18 07:06:43.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.404 -07 000000618 INF: FPGA: Recv ZSGSRD 29471 17-03-18 07:06:43.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:43.414 -07 000000618 INF: FPGA: Recv ZPIEZORD 25082 17-03-18 07:06:43.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.424 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -9.6 V. 17-03-18 07:06:43.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29473 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29472 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29468 (-128.9 uncal um), Max = 29479 (-128.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 07:06:43.424 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29473, posNoise = 6, negNoise = 5 17-03-18 07:06:43.424 -07 000000610 INF: Z Motor: After move to -0.129664, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:43.424 -07 000000610 INF: Z Motor: Settle wait time = 1459 ms, measure time = 106 ms (allowed 150 ms), total time = 1565 ms 17-03-18 07:06:43.424 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:43.474 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1738 ms 17-03-18 07:06:43.474 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:43.474 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.129664156465256. ---------- 17-03-18 07:06:43.474 -07 000000610 INF: Cycle 157 Tile 15 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:43.474 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28148, sync = True, waitForSettling = True) 17-03-18 07:06:43.474 -07 000000610 INF: Z Motor: Moving to -0.128853 mm, started at -0.129664 mm, distance = 0.81 um 17-03-18 07:06:43.474 -07 000000610 INF: FPGA: Xmit ZDACW 28148\n [Z Motor] 17-03-18 07:06:43.484 -07 000000591 INF: FPGA: Recv ZDACW 17-03-18 07:06:43.484 -07 000000610 INF: FPGA: 'ZDACW 28148' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-18 07:06:43.484 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:43.484 -07 000000626 INF: FPGA: Recv ZDACR 28148 17-03-18 07:06:43.494 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-18 07:06:43.494 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:43.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.644 -07 000000569 INF: FPGA: Recv ZSGSRD 29347 17-03-18 07:06:43.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:43.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.654 -07 000000581 INF: FPGA: Recv ZSGSRD 29352 17-03-18 07:06:43.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.664 -07 000000569 INF: FPGA: Recv ZSGSRD 29349 17-03-18 07:06:43.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.674 -07 000000581 INF: FPGA: Recv ZSGSRD 29347 17-03-18 07:06:43.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.684 -07 000000569 INF: FPGA: Recv ZSGSRD 29347 17-03-18 07:06:43.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.694 -07 000000626 INF: FPGA: Recv ZSGSRD 29347 17-03-18 07:06:43.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.704 -07 000000569 INF: FPGA: Recv ZSGSRD 29347 17-03-18 07:06:43.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.714 -07 000000591 INF: FPGA: Recv ZSGSRD 29349 17-03-18 07:06:43.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.724 -07 000000474 INF: FPGA: Recv ZSGSRD 29347 17-03-18 07:06:43.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:43.734 -07 000000591 INF: FPGA: Recv ZSGSRD 29350 17-03-18 07:06:43.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.744 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:43.744 -07 000000626 INF: FPGA: Recv ZPIEZORD 24877 17-03-18 07:06:43.754 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:43.754 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.295 V. Piezo Error = -9.8 V. 17-03-18 07:06:43.754 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29348 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29347 (-128.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29347 (-128.1 uncal um), Max = 29352 (-128.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um) 17-03-18 07:06:43.754 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29348, posNoise = 4, negNoise = 1 17-03-18 07:06:43.754 -07 000000610 INF: Z Motor: After move to -0.128853, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:43.754 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms) 17-03-18 07:06:43.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:43.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:43.754 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:43.754 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:43.754 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:43.754 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:43.754 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:43.754 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:43.754 -07 000000581 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:06:43.764 -07 000000625 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms. 17-03-18 07:06:43.764 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:43.764 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:43.764 -07 000000581 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-18 07:06:43.764 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:43.764 -07 000000625 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 07:06:43.764 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:43.774 -07 000000625 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 07:06:43.774 -07 000000625 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms. 17-03-18 07:06:43.774 -07 000000581 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 07:06:43.774 -07 000000581 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms. 17-03-18 07:06:43.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28325 150\n [Camera] 17-03-18 07:06:43.974 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:44.444 -07 000000581 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:44.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:44.444 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:44.454 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:44.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:44.454 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:44.454 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:44.454 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-18 07:06:44.454 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:44.454 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-18 07:06:44.644 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28325 859 17-03-18 07:06:44.794 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:44.834 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 374 ms. 17-03-18 07:06:44.834 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms. 17-03-18 07:06:44.834 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:44.834 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:44.834 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 381 ms. 17-03-18 07:06:44.834 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms. 17-03-18 07:06:44.834 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:44.834 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:44.844 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-18 07:06:44.844 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-18 07:06:45.014 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:45.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:45.024 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:45.024 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:45.024 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-18 07:06:45.024 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:45.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:45.024 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:45.024 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:45.024 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start. 17-03-18 07:06:45.214 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:06:45.214 -07 000000581 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:45.214 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28325 150' command took 2 ms to send, 1431 ms to get response, and 1436 ms overall 17-03-18 07:06:45.214 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129206 17-03-18 07:06:45.214 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12921 mm 17-03-18 07:06:45.214 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:45.214 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True) 17-03-18 07:06:45.214 -07 000000591 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm 17-03-18 07:06:45.214 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:45.214 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 28225, sync = True, waitForSettling = False) 17-03-18 07:06:45.214 -07 000000626 INF: Z Motor: Moving to -0.129206 mm, started at -0.128861 mm, distance = -0.34 um 17-03-18 07:06:45.214 -07 000000437 INF: FPGA: Recv YRDPOS 146468 17-03-18 07:06:45.224 -07 000000626 INF: FPGA: Xmit ZDACW 28225\n [Z Motor] 17-03-18 07:06:45.224 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:06:45.224 -07 000000591 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:45.224 -07 000000591 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:45.224 -07 000000591 INF: Y Motor: Moving 1352 steps-31 17-03-18 07:06:45.224 -07 000000618 INF: FPGA: Recv ZDACW 17-03-18 07:06:45.234 -07 000000626 INF: FPGA: 'ZDACW 28225' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-18 07:06:45.234 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:45.234 -07 000000581 INF: FPGA: Recv ZDACR 28225 17-03-18 07:06:45.244 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:45.244 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:45.244 -07 000000626 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet)) 17-03-18 07:06:45.404 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 380 ms. 17-03-18 07:06:45.404 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms. 17-03-18 07:06:45.404 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:45.404 -07 000000625 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms. 17-03-18 07:06:45.404 -07 000000625 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-18 07:06:45.404 -07 000000625 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:45.404 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:45.404 -07 000000625 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:45.404 -07 000000625 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 07:06:45.414 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-18 07:06:45.614 -07 000000626 INF: FPGA: Recv YMVTILE 17-03-18 07:06:45.614 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:06:45.664 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:45.674 -07 000000618 INF: FPGA: Recv YRDPOS 148169 17-03-18 07:06:45.684 -07 000000591 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:45.684 -07 000000591 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:45.684 -07 000000591 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm) 17-03-18 07:06:45.684 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec 17-03-18 07:06:46.414 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.99219, 17-03-18 07:06:46.634 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:46.634 -07 000000585 INF: FPGA: Recv YRDPOS 148169 17-03-18 07:06:46.644 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:46.644 -07 000000591 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:46.674 -07 000000591 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:46.674 -07 000000591 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:46.674 -07 000000591 INF: Y Motor: Moved to 72.3481 after 1457 ms (table move) 17-03-18 07:06:46.674 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129206 mm (DAC = 28225) 17-03-18 07:06:46.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:46.674 -07 000000626 INF: FPGA: Recv ZSGSRD 29404 17-03-18 07:06:46.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-18 07:06:46.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:46.684 -07 000000618 INF: FPGA: Recv ZSGSRD 29402 17-03-18 07:06:46.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:46.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:46.694 -07 000000474 INF: FPGA: Recv ZSGSRD 29401 17-03-18 07:06:46.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:46.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:46.704 -07 000000581 INF: FPGA: Recv ZSGSRD 29393 17-03-18 07:06:46.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:46.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:46.714 -07 000000585 INF: FPGA: Recv ZSGSRD 29403 17-03-18 07:06:46.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:46.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:46.724 -07 000000581 INF: FPGA: Recv ZSGSRD 29402 17-03-18 07:06:46.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:46.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:46.734 -07 000000569 INF: FPGA: Recv ZSGSRD 29411 17-03-18 07:06:46.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:46.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:46.744 -07 000000474 INF: FPGA: Recv ZSGSRD 29406 17-03-18 07:06:46.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:46.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:46.754 -07 000000591 INF: FPGA: Recv ZSGSRD 29399 17-03-18 07:06:46.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:46.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:46.764 -07 000000585 INF: FPGA: Recv ZSGSRD 29405 17-03-18 07:06:46.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:46.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:46.774 -07 000000626 INF: FPGA: Recv ZPIEZORD 24935 17-03-18 07:06:46.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:46.784 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.307 V. Piezo Error = -9.8 V. 17-03-18 07:06:46.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29403 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29402 (-128.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29393 (-128.4 uncal um), Max = 29411 (-128.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um) 17-03-18 07:06:46.784 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29403, posNoise = 8, negNoise = 10 17-03-18 07:06:46.784 -07 000000610 INF: Z Motor: After move to -0.129206, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:46.784 -07 000000610 INF: Z Motor: Settle wait time = 1459 ms, measure time = 105 ms (allowed 150 ms), total time = 1564 ms 17-03-18 07:06:46.784 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:46.834 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms 17-03-18 07:06:46.834 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:46.834 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.129214461615332. ---------- 17-03-18 07:06:46.834 -07 000000610 INF: Cycle 157 Tile 16 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:46.834 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28048, sync = True, waitForSettling = True) 17-03-18 07:06:46.834 -07 000000610 INF: Z Motor: Moving to -0.128396 mm, started at -0.129214 mm, distance = 0.82 um 17-03-18 07:06:46.834 -07 000000610 INF: FPGA: Xmit ZDACW 28048\n [Z Motor] 17-03-18 07:06:46.834 -07 000000437 INF: FPGA: Recv ZDACW 17-03-18 07:06:46.844 -07 000000610 INF: FPGA: 'ZDACW 28048' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:06:46.844 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:46.844 -07 000000625 INF: FPGA: Recv ZDACR 28048 17-03-18 07:06:46.854 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:46.854 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:46.924 -07 000000581 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:06:46.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:06:47.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:47.004 -07 000000618 INF: FPGA: Recv ZSGSRD 29278 17-03-18 07:06:47.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:47.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:47.014 -07 000000581 INF: FPGA: Recv ZSGSRD 29275 17-03-18 07:06:47.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:47.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:47.024 -07 000000585 INF: FPGA: Recv ZSGSRD 29276 17-03-18 07:06:47.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:47.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:47.034 -07 000000437 INF: FPGA: Recv ZSGSRD 29270 17-03-18 07:06:47.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:47.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:47.044 -07 000000591 INF: FPGA: Recv ZSGSRD 29278 17-03-18 07:06:47.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:47.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:47.054 -07 000000437 INF: FPGA: Recv ZSGSRD 29281 17-03-18 07:06:47.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:47.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:47.064 -07 000000437 INF: FPGA: Recv ZSGSRD 29278 17-03-18 07:06:47.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:47.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:47.074 -07 000000437 INF: FPGA: Recv ZSGSRD 29280 17-03-18 07:06:47.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:47.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:47.084 -07 000000474 INF: FPGA: Recv ZSGSRD 29270 17-03-18 07:06:47.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:47.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:47.094 -07 000000437 INF: FPGA: Recv ZSGSRD 29275 17-03-18 07:06:47.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:47.104 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:47.104 -07 000000437 INF: FPGA: Recv ZPIEZORD 24773 17-03-18 07:06:47.114 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:47.114 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.280 V. Piezo Error = -9.9 V. 17-03-18 07:06:47.114 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29276 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29277 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29270 (-127.6 uncal um), Max = 29281 (-127.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:06:47.114 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29276, posNoise = 5, negNoise = 6 17-03-18 07:06:47.114 -07 000000610 INF: Z Motor: After move to -0.128396, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:47.114 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-18 07:06:47.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:47.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:47.114 -07 000000625 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:47.114 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:47.114 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:47.114 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:47.114 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:47.114 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:47.114 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:06:47.114 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:47.114 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 07:06:47.114 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:47.124 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:06:47.124 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:47.124 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:06:47.124 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:47.134 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 07:06:47.134 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:06:47.134 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-18 07:06:47.134 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-18 07:06:47.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28225 150\n [Camera] 17-03-18 07:06:47.344 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:47.814 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:47.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:47.814 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:47.814 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:47.814 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-18 07:06:47.814 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:47.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:47.814 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:47.814 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:47.814 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-18 07:06:48.004 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28225 859 17-03-18 07:06:48.154 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:48.194 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms. 17-03-18 07:06:48.194 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-18 07:06:48.194 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:48.204 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:48.204 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-18 07:06:48.224 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 402 ms. 17-03-18 07:06:48.224 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-18 07:06:48.224 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:48.224 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:48.234 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-18 07:06:48.384 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:48.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:48.384 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:48.384 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:48.384 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-18 07:06:48.384 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:48.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:48.384 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:48.384 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:48.384 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-18 07:06:48.574 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:06:48.574 -07 000000430 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:48.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28225 150' command took 2 ms to send, 1427 ms to get response, and 1437 ms overall 17-03-18 07:06:48.574 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.128826 17-03-18 07:06:48.584 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12883 mm 17-03-18 07:06:48.584 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:48.584 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 28142, sync = True, waitForSettling = False) 17-03-18 07:06:48.584 -07 000000430 INF: Z Motor: Moving to -0.128826 mm, started at -0.128399 mm, distance = -0.43 um 17-03-18 07:06:48.584 -07 000000430 INF: FPGA: Xmit ZDACW 28142\n [Z Motor] 17-03-18 07:06:48.584 -07 000000625 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True) 17-03-18 07:06:48.584 -07 000000625 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm 17-03-18 07:06:48.584 -07 000000618 INF: FPGA: Recv ZDACW 17-03-18 07:06:48.594 -07 000000430 INF: FPGA: 'ZDACW 28142' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:06:48.594 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:48.594 -07 000000626 INF: FPGA: Recv YRDPOS 148169 17-03-18 07:06:48.604 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-18 07:06:48.604 -07 000000625 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:48.604 -07 000000625 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:48.604 -07 000000625 INF: Y Motor: Moving 1351 steps-30 17-03-18 07:06:48.604 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:48.604 -07 000000437 INF: FPGA: Recv ZDACR 28142 17-03-18 07:06:48.614 -07 000000430 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:06:48.614 -07 000000430 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet)) 17-03-18 07:06:48.614 -07 000000625 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:48.764 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms. 17-03-18 07:06:48.764 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-18 07:06:48.764 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:48.764 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms. 17-03-18 07:06:48.764 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms. 17-03-18 07:06:48.764 -07 000000591 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:48.774 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:48.774 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-18 07:06:48.774 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:48.774 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-18 07:06:48.984 -07 000000430 INF: FPGA: Recv YMVTILE 17-03-18 07:06:48.984 -07 000000625 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall 17-03-18 07:06:49.044 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:49.044 -07 000000430 INF: FPGA: Recv YRDPOS 149861 17-03-18 07:06:49.054 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:06:49.054 -07 000000625 INF: Y Motor: Encoder = 149861 = motor step 117078.9 = 73.1743 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:49.054 -07 000000625 INF: Y Motor: Position error before settling (table move) = -37 encoder counts (-0.018 mm) 17-03-18 07:06:49.054 -07 000000625 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.176 mm/sec 17-03-18 07:06:50.004 -07 000000625 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:50.004 -07 000000626 INF: FPGA: Recv YRDPOS 149862 17-03-18 07:06:50.014 -07 000000625 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:50.014 -07 000000625 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:50.044 -07 000000625 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:50.044 -07 000000625 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 1 counts (0.000 mm) 17-03-18 07:06:50.044 -07 000000625 INF: Y Motor: Moved to 73.1748 after 1461 ms (table move) 17-03-18 07:06:50.044 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128826 mm (DAC = 28142) 17-03-18 07:06:50.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.054 -07 000000437 INF: FPGA: Recv ZSGSRD 29345 17-03-18 07:06:50.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-18 07:06:50.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.054 -07 000000625 INF: FPGA: Recv ZSGSRD 29343 17-03-18 07:06:50.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.064 -07 000000474 INF: FPGA: Recv ZSGSRD 29343 17-03-18 07:06:50.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.074 -07 000000618 INF: FPGA: Recv ZSGSRD 29344 17-03-18 07:06:50.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.084 -07 000000474 INF: FPGA: Recv ZSGSRD 29343 17-03-18 07:06:50.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.094 -07 000000626 INF: FPGA: Recv ZSGSRD 29345 17-03-18 07:06:50.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.104 -07 000000474 INF: FPGA: Recv ZSGSRD 29343 17-03-18 07:06:50.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.114 -07 000000626 INF: FPGA: Recv ZSGSRD 29341 17-03-18 07:06:50.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.124 -07 000000591 INF: FPGA: Recv ZSGSRD 29347 17-03-18 07:06:50.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.134 -07 000000430 INF: FPGA: Recv ZSGSRD 29347 17-03-18 07:06:50.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:50.144 -07 000000618 INF: FPGA: Recv ZPIEZORD 24846 17-03-18 07:06:50.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.154 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.9 V. 17-03-18 07:06:50.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29344 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29344 (-128.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29341 (-128.0 uncal um), Max = 29347 (-128.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-18 07:06:50.154 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29344, posNoise = 3, negNoise = 3 17-03-18 07:06:50.154 -07 000000610 INF: Z Motor: After move to -0.128826, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:50.154 -07 000000610 INF: Z Motor: Settle wait time = 1464 ms, measure time = 103 ms (allowed 150 ms), total time = 1567 ms 17-03-18 07:06:50.154 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:50.204 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms 17-03-18 07:06:50.204 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:50.204 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.128835433098969. ---------- 17-03-18 07:06:50.204 -07 000000610 INF: Cycle 157 Tile 17 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:50.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27965, sync = True, waitForSettling = True) 17-03-18 07:06:50.204 -07 000000610 INF: Z Motor: Moving to -0.128016 mm, started at -0.128835 mm, distance = 0.82 um 17-03-18 07:06:50.204 -07 000000610 INF: FPGA: Xmit ZDACW 27965\n [Z Motor] 17-03-18 07:06:50.204 -07 000000591 INF: FPGA: Recv ZDACW 17-03-18 07:06:50.214 -07 000000610 INF: FPGA: 'ZDACW 27965' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:06:50.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:50.214 -07 000000625 INF: FPGA: Recv ZDACR 27965 17-03-18 07:06:50.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:50.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.374 -07 000000437 INF: FPGA: Recv ZSGSRD 29220 17-03-18 07:06:50.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:50.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.384 -07 000000430 INF: FPGA: Recv ZSGSRD 29216 17-03-18 07:06:50.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.394 -07 000000591 INF: FPGA: Recv ZSGSRD 29216 17-03-18 07:06:50.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.404 -07 000000625 INF: FPGA: Recv ZSGSRD 29223 17-03-18 07:06:50.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.414 -07 000000626 INF: FPGA: Recv ZSGSRD 29220 17-03-18 07:06:50.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.424 -07 000000618 INF: FPGA: Recv ZSGSRD 29216 17-03-18 07:06:50.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.434 -07 000000625 INF: FPGA: Recv ZSGSRD 29215 17-03-18 07:06:50.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.444 -07 000000618 INF: FPGA: Recv ZSGSRD 29216 17-03-18 07:06:50.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.454 -07 000000437 INF: FPGA: Recv ZSGSRD 29219 17-03-18 07:06:50.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:50.464 -07 000000591 INF: FPGA: Recv ZSGSRD 29214 17-03-18 07:06:50.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:50.474 -07 000000625 INF: FPGA: Recv ZPIEZORD 24693 17-03-18 07:06:50.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:50.484 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.9 V. 17-03-18 07:06:50.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29218 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29216 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29214 (-127.2 uncal um), Max = 29223 (-127.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 07:06:50.484 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29218, posNoise = 5, negNoise = 4 17-03-18 07:06:50.484 -07 000000610 INF: Z Motor: After move to -0.128016, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:50.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms) 17-03-18 07:06:50.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:50.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:50.484 -07 000000474 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:50.484 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:50.484 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:50.484 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:50.484 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:50.484 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:50.484 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-18 07:06:50.484 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:50.484 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:06:50.484 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:50.494 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:06:50.494 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:50.494 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-18 07:06:50.494 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:50.504 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-18 07:06:50.504 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:06:50.504 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-18 07:06:50.504 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-18 07:06:50.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28142 150\n [Camera] 17-03-18 07:06:50.714 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 194 17-03-18 07:06:51.184 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:51.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:51.184 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:51.184 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:51.184 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start. 17-03-18 07:06:51.184 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:51.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:51.184 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:51.184 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:51.184 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start. 17-03-18 07:06:51.374 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28142 859 17-03-18 07:06:51.584 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 398 ms. 17-03-18 07:06:51.584 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-18 07:06:51.584 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms. 17-03-18 07:06:51.584 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-18 07:06:51.584 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:51.584 -07 000000430 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:51.584 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:51.594 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:51.594 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-18 07:06:51.594 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:51.604 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-18 07:06:51.754 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:51.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:51.754 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:51.754 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:51.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:51.754 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:51.764 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:51.764 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-18 07:06:51.764 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:51.764 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-18 07:06:51.774 -07 000000625 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 4.009895, 17-03-18 07:06:51.924 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:06:51.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:06:51.944 -07 000000625 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:06:51.944 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:51.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28142 150' command took 2 ms to send, 1426 ms to get response, and 1436 ms overall 17-03-18 07:06:51.944 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-18 07:06:51.944 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.128025982369107. ------ 17-03-18 07:06:51.954 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:06:51.954 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13403 mm 17-03-18 07:06:51.954 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:51.954 -07 000000626 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:06:51.954 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True) 17-03-18 07:06:51.954 -07 000000430 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm 17-03-18 07:06:51.954 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29278, sync = True, waitForSettling = False) 17-03-18 07:06:51.954 -07 000000576 INF: Z Motor: Moving to -0.134026 mm, started at -0.128026 mm, distance = -6.00 um 17-03-18 07:06:51.964 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-18 07:06:51.964 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:51.964 -07 000000606 INF: FPGA: Recv YRDPOS 149862 17-03-18 07:06:51.974 -07 000000576 INF: FPGA: Xmit ZDACW 29278\n [Z Motor] 17-03-18 07:06:51.974 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-18 07:06:51.974 -07 000000430 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:51.974 -07 000000430 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:51.974 -07 000000430 INF: Y Motor: Moving 1356 steps-37 17-03-18 07:06:51.974 -07 000000625 INF: FPGA: Recv ZDACW 17-03-18 07:06:51.984 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-18 07:06:51.984 -07 000000576 INF: FPGA: 'ZDACW 29278' command took 0 ms to send, 0 ms to get response, and 21 ms overall 17-03-18 07:06:51.994 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:52.004 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:52.004 -07 000000474 INF: FPGA: Recv ZDACR 29278 17-03-18 07:06:52.014 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-18 07:06:52.014 -07 000000576 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet)) 17-03-18 07:06:52.134 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 372 ms. 17-03-18 07:06:52.134 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms. 17-03-18 07:06:52.134 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:52.134 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 379 ms. 17-03-18 07:06:52.144 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms. 17-03-18 07:06:52.144 -07 000000585 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:52.144 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:52.144 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:52.144 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-18 07:06:52.144 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-18 07:06:52.184 -07 000000541 INF: FPGA: Recv FOCMRRFOC 17-03-18 07:06:52.184 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-18 07:06:52.364 -07 000000576 INF: FPGA: Recv YMVTILE 17-03-18 07:06:52.364 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-18 07:06:52.414 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:52.414 -07 000000474 INF: FPGA: Recv YRDPOS 151566 17-03-18 07:06:52.424 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:06:52.424 -07 000000430 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:52.424 -07 000000430 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm) 17-03-18 07:06:52.424 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.848 mm, average velocity = 2.136 mm/sec 17-03-18 07:06:53.374 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:53.374 -07 000000474 INF: FPGA: Recv YRDPOS 151566 17-03-18 07:06:53.384 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:53.384 -07 000000430 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:53.404 -07 000000430 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:53.404 -07 000000430 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:53.404 -07 000000430 INF: Y Motor: Moved to 74.0068 after 1448 ms (table move) 17-03-18 07:06:53.404 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134026 mm (DAC = 29278) 17-03-18 07:06:53.404 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:53.414 -07 000000585 INF: FPGA: Recv ZSGSRD 30154 17-03-18 07:06:53.414 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-18 07:06:53.414 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:53.414 -07 000000569 INF: FPGA: Recv ZSGSRD 30151 17-03-18 07:06:53.424 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-18 07:06:53.424 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:53.424 -07 000000585 INF: FPGA: Recv ZSGSRD 30153 17-03-18 07:06:53.434 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:53.434 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:53.434 -07 000000569 INF: FPGA: Recv ZSGSRD 30147 17-03-18 07:06:53.444 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:53.444 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:53.444 -07 000000437 INF: FPGA: Recv ZSGSRD 30151 17-03-18 07:06:53.454 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:53.454 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:53.454 -07 000000606 INF: FPGA: Recv ZSGSRD 30148 17-03-18 07:06:53.464 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:53.464 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:53.464 -07 000000585 INF: FPGA: Recv ZSGSRD 30155 17-03-18 07:06:53.474 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:53.474 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:53.474 -07 000000606 INF: FPGA: Recv ZSGSRD 30150 17-03-18 07:06:53.484 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:53.484 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:53.484 -07 000000569 INF: FPGA: Recv ZSGSRD 30157 17-03-18 07:06:53.494 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:53.494 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:53.494 -07 000000626 INF: FPGA: Recv ZSGSRD 30154 17-03-18 07:06:53.504 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:53.504 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:53.504 -07 000000569 INF: FPGA: Recv ZPIEZORD 25959 17-03-18 07:06:53.514 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:53.514 -07 000000512 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.468 V. Piezo Error = -9.2 V. 17-03-18 07:06:53.514 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30152 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30152 (-133.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30147 (-133.2 uncal um), Max = 30157 (-133.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-18 07:06:53.514 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30152, posNoise = 5, negNoise = 5 17-03-18 07:06:53.514 -07 000000512 INF: Z Motor: After move to -0.134026, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:53.514 -07 000000512 INF: Z Motor: Settle wait time = 1451 ms, measure time = 101 ms (allowed 150 ms), total time = 1552 ms 17-03-18 07:06:53.514 -07 000000512 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:53.564 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms 17-03-18 07:06:53.564 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:53.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:53.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:53.564 -07 000000585 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:53.564 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:53.564 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-18 07:06:53.564 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:53.564 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:06:53.564 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-18 07:06:53.574 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-18 07:06:53.574 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-18 07:06:53.584 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-18 07:06:53.584 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-18 07:06:53.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-18 07:06:53.634 -07 000000585 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-18 07:06:53.934 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-18 07:06:53.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-18 07:06:53.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-18 07:06:53.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-18 07:06:53.964 -07 000000626 INF: FPGA: Recv @CAMSNAP 380 17-03-18 07:06:53.974 -07 000000585 INF: FPGA: Recv CAMSNAP 17-03-18 07:06:53.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall 17-03-18 07:06:54.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms. 17-03-18 07:06:54.054 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:54.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-18 07:06:54.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms. 17-03-18 07:06:54.074 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-18 07:06:54.074 -07 000000606 INF: Autofocus start 17-03-18 07:06:54.074 -07 000000606 INF: MeasureProfile start 17-03-18 07:06:54.074 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-18 07:06:54.084 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:06:54.084 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-18 07:06:54.084 -07 000000606 INF: MeasureProfile done 17-03-18 07:06:54.084 -07 000000606 INF: X=-32 Z correction [um]=-0.1591732 17-03-18 07:06:54.084 -07 000000606 INF: Autofocus finished 17-03-18 07:06:54.284 -07 000000437 INF: FPGA: Recv FOCMRRIMG 17-03-18 07:06:54.284 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-18 07:06:54.284 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.134026196509511. ---------- 17-03-18 07:06:54.284 -07 000000610 INF: Cycle 157 Tile 18 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:54.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27756, sync = True, waitForSettling = True) 17-03-18 07:06:54.294 -07 000000610 INF: Z Motor: Moving to -0.127059 mm, started at -0.134026 mm, distance = 6.97 um 17-03-18 07:06:54.294 -07 000000610 INF: FPGA: Xmit ZDACW 27756\n [Z Motor] 17-03-18 07:06:54.294 -07 000000606 INF: FPGA: Recv ZDACW 17-03-18 07:06:54.304 -07 000000610 INF: FPGA: 'ZDACW 27756' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:54.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:54.304 -07 000000512 INF: FPGA: Recv ZDACR 27756 17-03-18 07:06:54.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:54.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:54.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:54.464 -07 000000606 INF: FPGA: Recv ZSGSRD 29070 17-03-18 07:06:54.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:54.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:54.474 -07 000000585 INF: FPGA: Recv ZSGSRD 29064 17-03-18 07:06:54.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:54.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:54.484 -07 000000608 INF: FPGA: Recv ZSGSRD 29067 17-03-18 07:06:54.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:54.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:54.494 -07 000000585 INF: FPGA: Recv ZSGSRD 29070 17-03-18 07:06:54.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:54.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:54.504 -07 000000569 INF: FPGA: Recv ZSGSRD 29066 17-03-18 07:06:54.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:54.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:54.514 -07 000000437 INF: FPGA: Recv ZSGSRD 29066 17-03-18 07:06:54.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:54.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:54.524 -07 000000569 INF: FPGA: Recv ZSGSRD 29072 17-03-18 07:06:54.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:54.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:54.534 -07 000000606 INF: FPGA: Recv ZSGSRD 29072 17-03-18 07:06:54.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:54.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:54.544 -07 000000626 INF: FPGA: Recv ZSGSRD 29068 17-03-18 07:06:54.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:54.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:54.554 -07 000000606 INF: FPGA: Recv ZSGSRD 29066 17-03-18 07:06:54.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:54.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:54.564 -07 000000569 INF: FPGA: Recv ZPIEZORD 24509 17-03-18 07:06:54.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:54.574 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.235 V. Piezo Error = -10.0 V. 17-03-18 07:06:54.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.1 um, Read 10 ADC samples: Avg = 29068 (-126.3 uncal um), Error = 0.8 uncal um, Median = 29068 (-126.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29064 (-126.3 uncal um), Max = 29072 (-126.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-18 07:06:54.574 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29068, posNoise = 4, negNoise = 4 17-03-18 07:06:54.574 -07 000000610 INF: Z Motor: After move to -0.127059, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:54.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-18 07:06:54.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:54.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:54.574 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:54.574 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:54.574 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:54.574 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:54.574 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:54.574 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:54.574 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 07:06:54.574 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:54.574 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-18 07:06:54.574 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:54.574 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:06:54.574 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:54.584 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 07:06:54.584 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:54.584 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-18 07:06:54.584 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 07:06:54.584 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-18 07:06:54.584 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-18 07:06:54.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 27933 150\n [Camera] 17-03-18 07:06:54.794 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:55.264 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:55.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:55.264 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:55.264 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:55.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:55.274 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:55.274 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:55.274 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-18 07:06:55.274 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:55.274 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-18 07:06:55.464 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27933 859 17-03-18 07:06:55.614 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:55.654 -07 000000585 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms. 17-03-18 07:06:55.654 -07 000000585 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-18 07:06:55.654 -07 000000585 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:55.664 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 384 ms. 17-03-18 07:06:55.664 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-18 07:06:55.664 -07 000000606 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:55.664 -07 000000585 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:55.674 -07 000000585 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-18 07:06:55.674 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-18 07:06:55.674 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms. 17-03-18 07:06:55.834 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:55.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:55.834 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:55.844 -07 000000585 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:55.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:55.844 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:55.964 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:55.964 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-18 07:06:55.964 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:55.964 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start. 17-03-18 07:06:56.024 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:06:56.024 -07 000000606 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:56.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 27933 150' command took 2 ms to send, 1429 ms to get response, and 1436 ms overall 17-03-18 07:06:56.034 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.127434 17-03-18 07:06:56.034 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12743 mm 17-03-18 07:06:56.034 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-18 07:06:56.034 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 27838, sync = True, waitForSettling = False) 17-03-18 07:06:56.034 -07 000000437 INF: Z Motor: Moving to -0.127434 mm, started at -0.127062 mm, distance = -0.37 um 17-03-18 07:06:56.034 -07 000000437 INF: FPGA: Xmit ZDACW 27838\n [Z Motor] 17-03-18 07:06:56.034 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True) 17-03-18 07:06:56.034 -07 000000474 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm 17-03-18 07:06:56.034 -07 000000569 INF: FPGA: Recv ZDACW 17-03-18 07:06:56.044 -07 000000437 INF: FPGA: 'ZDACW 27838' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:06:56.044 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:56.044 -07 000000569 INF: FPGA: Recv YRDPOS 151566 17-03-18 07:06:56.054 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:56.054 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-18 07:06:56.054 -07 000000474 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:56.054 -07 000000474 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-18 07:06:56.054 -07 000000474 INF: Y Motor: Moving 1353 steps-32 17-03-18 07:06:56.054 -07 000000606 INF: FPGA: Recv ZDACR 27838 17-03-18 07:06:56.064 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-18 07:06:56.064 -07 000000437 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet)) 17-03-18 07:06:56.064 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-18 07:06:56.354 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 383 ms. 17-03-18 07:06:56.354 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-18 07:06:56.354 -07 000000626 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:56.354 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms. 17-03-18 07:06:56.354 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-18 07:06:56.354 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:56.354 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:56.354 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:56.354 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms. 17-03-18 07:06:56.364 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms. 17-03-18 07:06:56.434 -07 000000626 INF: FPGA: Recv YMVTILE 17-03-18 07:06:56.434 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-18 07:06:56.474 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:56.474 -07 000000569 INF: FPGA: Recv YRDPOS 153253 17-03-18 07:06:56.484 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:56.484 -07 000000474 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:56.484 -07 000000474 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm) 17-03-18 07:06:56.484 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.185 mm/sec 17-03-18 07:06:56.924 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-18 07:06:56.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 156. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval. 17-03-18 07:06:57.134 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.999021, 17-03-18 07:06:57.434 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-18 07:06:57.434 -07 000000569 INF: FPGA: Recv YRDPOS 153253 17-03-18 07:06:57.444 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:57.444 -07 000000474 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-18 07:06:57.464 -07 000000474 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm 17-03-18 07:06:57.464 -07 000000474 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm) 17-03-18 07:06:57.464 -07 000000474 INF: Y Motor: Moved to 74.8306 after 1426 ms (table move) 17-03-18 07:06:57.464 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.127434 mm (DAC = 27838) 17-03-18 07:06:57.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.464 -07 000000585 INF: FPGA: Recv ZSGSRD 29121 17-03-18 07:06:57.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-18 07:06:57.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.474 -07 000000512 INF: FPGA: Recv ZSGSRD 29122 17-03-18 07:06:57.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.484 -07 000000608 INF: FPGA: Recv ZSGSRD 29128 17-03-18 07:06:57.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.494 -07 000000474 INF: FPGA: Recv ZSGSRD 29129 17-03-18 07:06:57.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.504 -07 000000606 INF: FPGA: Recv ZSGSRD 29129 17-03-18 07:06:57.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.514 -07 000000569 INF: FPGA: Recv ZSGSRD 29126 17-03-18 07:06:57.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.524 -07 000000606 INF: FPGA: Recv ZSGSRD 29133 17-03-18 07:06:57.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.534 -07 000000626 INF: FPGA: Recv ZSGSRD 29123 17-03-18 07:06:57.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.544 -07 000000585 INF: FPGA: Recv ZSGSRD 29120 17-03-18 07:06:57.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.554 -07 000000512 INF: FPGA: Recv ZSGSRD 29125 17-03-18 07:06:57.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:57.564 -07 000000606 INF: FPGA: Recv ZPIEZORD 24654 17-03-18 07:06:57.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.574 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.248 V. Piezo Error = -9.8 V. 17-03-18 07:06:57.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29126 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29126 (-126.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29120 (-126.6 uncal um), Max = 29133 (-126.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-18 07:06:57.574 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29126, posNoise = 7, negNoise = 6 17-03-18 07:06:57.574 -07 000000610 INF: Z Motor: After move to -0.127434, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:57.574 -07 000000610 INF: Z Motor: Settle wait time = 1430 ms, measure time = 106 ms (allowed 150 ms), total time = 1536 ms 17-03-18 07:06:57.574 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms 17-03-18 07:06:57.624 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms 17-03-18 07:06:57.624 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-18 07:06:57.624 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.127434954852065. ---------- 17-03-18 07:06:57.624 -07 000000610 INF: Cycle 157 Tile 19 Exposure Settings A 474 G 228 T 228 C 474 17-03-18 07:06:57.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27661, sync = True, waitForSettling = True) 17-03-18 07:06:57.624 -07 000000610 INF: Z Motor: Moving to -0.126624 mm, started at -0.127435 mm, distance = 0.81 um 17-03-18 07:06:57.624 -07 000000610 INF: FPGA: Xmit ZDACW 27661\n [Z Motor] 17-03-18 07:06:57.624 -07 000000608 INF: FPGA: Recv ZDACW 17-03-18 07:06:57.634 -07 000000610 INF: FPGA: 'ZDACW 27661' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:06:57.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-18 07:06:57.634 -07 000000626 INF: FPGA: Recv ZDACR 27661 17-03-18 07:06:57.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:57.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-18 07:06:57.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.794 -07 000000626 INF: FPGA: Recv ZSGSRD 28999 17-03-18 07:06:57.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-18 07:06:57.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.804 -07 000000474 INF: FPGA: Recv ZSGSRD 29003 17-03-18 07:06:57.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.814 -07 000000626 INF: FPGA: Recv ZSGSRD 29004 17-03-18 07:06:57.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.824 -07 000000569 INF: FPGA: Recv ZSGSRD 28994 17-03-18 07:06:57.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.834 -07 000000585 INF: FPGA: Recv ZSGSRD 29001 17-03-18 07:06:57.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.844 -07 000000512 INF: FPGA: Recv ZSGSRD 29004 17-03-18 07:06:57.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.854 -07 000000626 INF: FPGA: Recv ZSGSRD 28997 17-03-18 07:06:57.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.864 -07 000000606 INF: FPGA: Recv ZSGSRD 28993 17-03-18 07:06:57.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.874 -07 000000585 INF: FPGA: Recv ZSGSRD 29002 17-03-18 07:06:57.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-18 07:06:57.884 -07 000000606 INF: FPGA: Recv ZSGSRD 29005 17-03-18 07:06:57.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-18 07:06:57.894 -07 000000626 INF: FPGA: Recv ZPIEZORD 24504 17-03-18 07:06:57.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-18 07:06:57.904 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.221 V. Piezo Error = -9.9 V. 17-03-18 07:06:57.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 29000 (-125.9 uncal um), Error = 0.8 uncal um, Median = 29002 (-125.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 28993 (-125.8 uncal um), Max = 29005 (-125.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-18 07:06:57.904 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29000, posNoise = 5, negNoise = 7 17-03-18 07:06:57.904 -07 000000610 INF: Z Motor: After move to -0.126624, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-18 07:06:57.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms) 17-03-18 07:06:57.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-18 07:06:57.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-18 07:06:57.904 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-18 07:06:57.904 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-18 07:06:57.904 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-18 07:06:57.904 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-18 07:06:57.904 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-18 07:06:57.904 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-18 07:06:57.904 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-18 07:06:57.904 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-18 07:06:57.904 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-18 07:06:57.904 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-18 07:06:57.914 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-18 07:06:57.914 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-18 07:06:57.914 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-18 07:06:57.914 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-18 07:06:57.914 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-18 07:06:57.914 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-18 07:06:57.924 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-18 07:06:57.924 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms. 17-03-18 07:06:57.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 27838 150\n [Camera] 17-03-18 07:06:58.124 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-18 07:06:58.594 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666 17-03-18 07:06:58.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666 17-03-18 07:06:58.594 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:58.594 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666 17-03-18 07:06:58.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666 17-03-18 07:06:58.604 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:58.604 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:58.604 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start. 17-03-18 07:06:58.604 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:58.604 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-18 07:06:58.784 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27838 859 17-03-18 07:06:58.934 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009 17-03-18 07:06:58.974 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 371 ms. 17-03-18 07:06:58.974 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms. 17-03-18 07:06:58.974 -07 000000474 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:58.984 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-18 07:06:58.984 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 379 ms. 17-03-18 07:06:58.984 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms. 17-03-18 07:06:58.984 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:58.984 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:58.984 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-18 07:06:58.984 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-18 07:06:59.164 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237 17-03-18 07:06:59.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237 17-03-18 07:06:59.164 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-18 07:06:59.174 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237 17-03-18 07:06:59.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237 17-03-18 07:06:59.174 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-18 07:06:59.174 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-18 07:06:59.174 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-18 07:06:59.174 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-18 07:06:59.174 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-18 07:06:59.354 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP 1430 17-03-18 07:06:59.354 -07 000000512 INF: FPGA: Recv CAMDBLSNAP 17-03-18 07:06:59.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 27838 150' command took 2 ms to send, 1429 ms to get response, and 1436 ms overall 17-03-18 07:06:59.554 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms. 17-03-18 07:06:59.554 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-18 07:06:59.554 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:59.554 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms. 17-03-18 07:06:59.554 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms. 17-03-18 07:06:59.554 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-18 07:06:59.554 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:59.554 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-18 07:06:59.554 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start. 17-03-18 07:06:59.554 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-18 07:06:59.564 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-18 07:06:59.604 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms. 17-03-18 07:06:59.604 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start. 17-03-18 07:06:59.644 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms. 17-03-18 07:06:59.764 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles. 17-03-18 07:06:59.764 -07 000000610 INF: Imaging Cycle 157: ScanTilesCommand Cycle 157 time end. Duration was 153325 ms. 17-03-18 07:06:59.764 -07 000000610 INF: =================== Cycle #157 =================== 17-03-18 07:06:59.764 -07 000000610 INF: =================== =================== 17-03-18 07:06:59.764 -07 000000512 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED] 17-03-18 07:06:59.764 -07 000000608 INF: FPGA: Recv EXLED1ADCR 28 17-03-18 07:06:59.774 -07 000000512 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-18 07:06:59.774 -07 000000512 INF: GreenLED: Using Green data: Photodiode ADC 28 --> 0.0 mW (old method), or 2.1 mW (new method). Difference = 2.1 mW 17-03-18 07:06:59.774 -07 000000512 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 157, FrontChillerTemperature: 3.999021, FrontChillerHeatSinkTemperature: 0.477504, AmbientTemperature: 18.74582, FlowCellCompartmentTemperature: 21.99255, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.59271, GreenLEDSensorTemperature: 25.47586, PhotodiodePowerAdcGreen: 28, PhotodiodePowerMwGreen: 2.10942 17-03-18 07:06:59.904 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.