17-03-18 07:06:59.954 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:06:59.954 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 07:06:59.954 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8306 mm, delta = 0.5500 mm
17-03-18 07:06:59.954 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:06:59.954 -07 000000512 INF: FPGA: Recv YRDPOS 153253
17-03-18 07:06:59.964 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:06:59.964 -07 000000610 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:06:59.964 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 07:06:59.964 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 07:06:59.964 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 07:07:00.074 -07 000000608 INF: FPGA: Recv YMVTO 154378 873
17-03-18 07:07:00.074 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 115 ms overall
17-03-18 07:07:00.074 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 07:07:00.074 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 880 steps, but required 873 steps (0.546 mm). Slippage = -0.004 mm (-0.01%).
17-03-18 07:07:00.074 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.550 mm, average velocity = 4.741 mm/sec
17-03-18 07:07:01.924 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:07:01.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2049, R2=2134, Total=4183. Warn if over 250 bubbles per interval.
17-03-18 07:07:02.494 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.98264,
17-03-18 07:07:03.074 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:07:03.074 -07 000000512 INF: FPGA: Recv YRDPOS 154377
17-03-18 07:07:03.084 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:07:03.084 -07 000000610 INF: Y Motor: Encoder = 154377 = motor step 120607.0 = 75.3794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:07:03.104 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.001185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:07:03.104 -07 000000610 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -1 counts (0.000 mm)
17-03-18 07:07:03.104 -07 000000610 INF: Y Motor: Moved to 75.3794 after 3149 ms
17-03-18 07:07:03.114 -07 000000610 INF: =================== Cycle #158, Flow Cell Temp 60° ===================
17-03-18 07:07:03.114 -07 000000610 INF: =================== Cycle #158, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 07:07:03.394 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 07:07:03.394 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-18 07:07:03.404 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:07:03.404 -07 000000610 INF: =================== Cycle #158, Flow Cell Temp 60° ===================
17-03-18 07:07:03.404 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:07:03.404 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 07:07:03.404 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:07:03.434 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 07:07:03.434 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 07:07:03.434 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 07:07:03.734 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 07:07:03.754 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 07:07:03.754 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 07:07:03.804 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:07:03.824 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 07:07:03.824 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 07:07:03.924 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:07:03.924 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 07:07:03.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:04.014 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 07:07:04.014 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 07:07:04.014 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 07:07:04.144 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 07:07:04.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:06.924 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 5
17-03-18 07:07:06.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=5, R2=4, Total=9. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2054, R2=2138, Total=4192. Warn if over 250 bubbles per interval.
17-03-18 07:07:07.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:07.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:07.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:07.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:07.854 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.004458,
17-03-18 07:07:08.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:08.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:08.244 -07 000000610 INF: LanePump: Waited 4060 ms for pump motion to complete
17-03-18 07:07:08.244 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:07:08.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:08.404 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 07:07:08.404 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 07:07:08.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:08.564 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 07:07:08.564 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 07:07:08.564 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 07:07:08.694 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 07:07:08.724 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:09.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:09.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:09.184 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 07:07:09.184 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:07:10.404 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 07:07:10.404 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 07:07:10.404 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:07:10.424 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 07:07:10.424 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 07:07:10.424 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 07:07:10.554 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 07:07:10.574 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 07:07:10.574 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 07:07:10.624 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:07:10.644 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 07:07:10.644 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 07:07:10.744 -07 000000610 INF: =================== Cycle #158, Pumping Reagent CMS (4) ===================
17-03-18 07:07:10.744 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 07:07:10.744 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:10.774 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 07:07:10.774 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 07:07:10.774 -07 000000610 INF: =================== Cycle #158, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 07:07:10.904 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 07:07:10.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:11.924 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-18 07:07:11.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2055, R2=2140, Total=4195. Warn if over 250 bubbles per interval.
17-03-18 07:07:12.384 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:12.414 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:12.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:12.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:12.864 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 07:07:12.864 -07 000000610 INF: =================== Cycle #158, Pumping Reagent CMS (4) ===================
17-03-18 07:07:12.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:13.024 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 07:07:13.024 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 07:07:13.154 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:13.184 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 07:07:13.184 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 07:07:13.184 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 07:07:13.214 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.990831,
17-03-18 07:07:13.314 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 07:07:13.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:13.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:13.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:13.804 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 07:07:13.804 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:07:15.024 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 07:07:15.024 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 07:07:15.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:07:15.044 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 07:07:15.044 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 07:07:15.044 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 07:07:15.194 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 07:07:15.214 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 07:07:15.214 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 07:07:15.264 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:07:15.284 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 07:07:15.284 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 07:07:15.384 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:07:15.384 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 07:07:15.384 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:15.414 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 07:07:15.414 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 07:07:15.414 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 07:07:15.544 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 07:07:15.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:16.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:16.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:16.484 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 07:07:16.484 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:07:16.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:16.644 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 07:07:16.644 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 07:07:16.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:16.804 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 07:07:16.804 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 07:07:16.804 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 07:07:16.924 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:07:16.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2055, R2=2140, Total=4195. Warn if over 250 bubbles per interval.
17-03-18 07:07:16.934 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 07:07:16.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:17.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:17.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:17.424 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 07:07:17.424 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:07:17.424 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 07:07:17.424 -07 000000585 INF: WaitCommand(10000) start
17-03-18 07:07:17.424 -07 000000608 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 07:07:18.574 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.979922,
17-03-18 07:07:18.644 -07 000000608 INF: AsyncDelayTimer waited 1218ms
17-03-18 07:07:18.644 -07 000000608 INF: LanePump: Xmit /1?\r
17-03-18 07:07:18.674 -07 000000608 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 07:07:18.674 -07 000000608 INF: LanePump: Current Position of Pump is: 1110
17-03-18 07:07:18.804 -07 000000608 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 07:07:18.844 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:20.374 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:20.404 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:20.824 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:20.854 -07 000000608 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:20.854 -07 000000608 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 07:07:20.854 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 07:07:20.854 -07 000000608 INF: ===================  ===================
17-03-18 07:07:21.924 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:07:21.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2055, R2=2140, Total=4195. Warn if over 250 bubbles per interval.
17-03-18 07:07:23.934 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.000345,
17-03-18 07:07:26.924 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:07:26.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2055, R2=2140, Total=4195. Warn if over 250 bubbles per interval.
17-03-18 07:07:27.434 -07 000000585 INF: WaitCommand(10000) end
17-03-18 07:07:27.434 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:07:27.434 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 07:07:27.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:27.464 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 07:07:27.464 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 07:07:27.464 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 07:07:27.594 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 07:07:27.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:29.294 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.98264,
17-03-18 07:07:31.924 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 07:07:31.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2057, R2=2142, Total=4199. Warn if over 250 bubbles per interval.
17-03-18 07:07:33.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:33.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:34.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:34.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:34.654 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.985358,
17-03-18 07:07:34.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:34.694 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:35.114 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:35.144 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:35.564 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:35.594 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:35.594 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 07:07:35.594 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:07:35.724 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:35.754 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 07:07:35.754 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 07:07:35.884 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:35.914 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 07:07:35.914 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 07:07:35.914 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 07:07:36.044 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 07:07:36.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:36.504 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:36.534 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:36.534 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 07:07:36.534 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:07:36.924 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 07:07:36.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:07:37.754 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 07:07:37.754 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 07:07:37.754 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:07:37.774 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 07:07:37.774 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 07:07:37.774 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 07:07:37.984 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 07:07:38.004 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 07:07:38.004 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 07:07:38.054 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:07:38.074 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 07:07:38.074 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 07:07:38.174 -07 000000610 INF: =================== Cycle #158, Pumping Reagent IMT (1) ===================
17-03-18 07:07:38.174 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 07:07:38.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:38.204 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 07:07:38.204 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 07:07:38.204 -07 000000610 INF: =================== Cycle #158, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 07:07:38.334 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 07:07:38.374 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:39.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:39.844 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:40.014 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.001704,
17-03-18 07:07:40.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:40.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:40.294 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 07:07:40.294 -07 000000610 INF: =================== Cycle #158, Pumping Reagent IMT (1) ===================
17-03-18 07:07:40.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:40.454 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 07:07:40.454 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 07:07:40.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:40.614 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 07:07:40.614 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 07:07:40.614 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 07:07:40.744 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 07:07:40.774 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:41.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:41.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:41.234 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 07:07:41.234 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:07:41.924 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:07:41.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:07:42.454 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 07:07:42.454 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 07:07:42.454 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:07:42.474 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 07:07:42.474 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 07:07:42.474 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 07:07:42.704 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 07:07:42.724 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 07:07:42.724 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 07:07:42.774 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:07:42.794 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 07:07:42.794 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 07:07:42.894 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:07:42.894 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 07:07:42.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:42.924 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 07:07:42.924 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 07:07:42.924 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 07:07:43.054 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 07:07:43.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:07:43.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:43.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:43.994 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 07:07:43.994 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:07:44.124 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:44.154 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 07:07:44.154 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 07:07:44.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:07:44.314 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 07:07:44.314 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 07:07:44.314 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 07:07:44.444 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 07:07:44.474 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:44.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:07:44.934 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:07:44.934 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 07:07:44.934 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:07:44.934 -07 000000610 INF: =================== Cycle #158, Flow Cell Temp 65° ===================
17-03-18 07:07:44.934 -07 000000610 INF: =================== Cycle #158, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 07:07:44.934 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 07:07:44.934 -07 000000618 INF: FPGA: Recv TEC2TEMP 
17-03-18 07:07:44.944 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:07:44.944 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 07:07:44.944 -07 000000437 INF: FPGA: Recv TEC2EN 
17-03-18 07:07:44.954 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:07:44.954 -07 000000610 INF: =================== Cycle #158, Flow Cell Temp 65° ===================
17-03-18 07:07:44.954 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:07:44.954 -07 000000610 INF: WaitCommand(30000) start
17-03-18 07:07:45.374 -07 000000585 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.98264,
17-03-18 07:07:46.924 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:07:46.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:07:50.734 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.996267,
17-03-18 07:07:51.924 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:07:51.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:07:56.094 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.019446,
17-03-18 07:07:56.924 -07 000000585 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:07:56.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:08:01.454 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.026244,
17-03-18 07:08:01.924 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:08:01.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:08:06.814 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.016692,
17-03-18 07:08:06.924 -07 000000611 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:08:06.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:08:11.924 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:08:11.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:08:12.174 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.028963,
17-03-18 07:08:14.964 -07 000000610 INF: WaitCommand(30000) end
17-03-18 07:08:14.964 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:08:14.964 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 07:08:15.064 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:08:15.094 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 07:08:15.094 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 07:08:15.094 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 07:08:15.224 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 07:08:15.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:08:15.804 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:08:15.834 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:08:15.834 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 07:08:15.834 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:08:15.964 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:08:15.994 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 07:08:15.994 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 07:08:16.124 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:08:16.154 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 07:08:16.154 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 07:08:16.154 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 07:08:16.284 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 07:08:16.314 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:08:16.744 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:08:16.774 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:08:16.774 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 07:08:16.774 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:08:16.774 -07 000000611 INF: WaitCommand(30000) start
17-03-18 07:08:16.774 -07 000000447 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 07:08:16.774 -07 000000447 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 07:08:16.924 -07 000000474 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:08:16.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:08:17.534 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.018051,
17-03-18 07:08:17.994 -07 000000447 INF: AsyncDelayTimer waited 1216ms
17-03-18 07:08:17.994 -07 000000447 INF: LanePump: Xmit /1?\r
17-03-18 07:08:18.024 -07 000000447 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 07:08:18.024 -07 000000447 INF: LanePump: Current Position of Pump is: 1920
17-03-18 07:08:18.154 -07 000000447 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 07:08:18.194 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:08:20.534 -07 000000447 INF: LanePump: Xmit /1Q\r
17-03-18 07:08:20.564 -07 000000447 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:08:20.984 -07 000000447 INF: LanePump: Xmit /1Q\r
17-03-18 07:08:21.014 -07 000000447 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:08:21.014 -07 000000447 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 07:08:21.014 -07 000000447 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 07:08:21.014 -07 000000447 INF: ===================  ===================
17-03-18 07:08:21.924 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:08:21.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:08:22.894 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.989471,
17-03-18 07:08:26.924 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:08:26.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:08:28.254 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.983999,
17-03-18 07:08:31.924 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:08:31.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:08:33.614 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.004458,
17-03-18 07:08:36.924 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:08:36.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:08:38.974 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.004458,
17-03-18 07:08:41.924 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:08:41.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:08:44.334 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.008536,
17-03-18 07:08:46.784 -07 000000611 INF: WaitCommand(30000) end
17-03-18 07:08:46.784 -07 000000610 INF: =================== Cycle #158, Flow Cell Temp 22° ===================
17-03-18 07:08:46.784 -07 000000610 INF: =================== Cycle #158, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 07:08:46.784 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 07:08:46.784 -07 000000437 INF: FPGA: Recv TEC2TEMP 
17-03-18 07:08:46.794 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:08:46.794 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 07:08:46.794 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-18 07:08:46.804 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:08:46.804 -07 000000610 INF: =================== Cycle #158, Flow Cell Temp 22° ===================
17-03-18 07:08:46.804 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:08:46.804 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:08:46.804 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 07:08:46.804 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:08:46.844 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 07:08:46.844 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 07:08:46.844 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 07:08:46.924 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:08:46.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2059, R2=2144, Total=4203. Warn if over 250 bubbles per interval.
17-03-18 07:08:46.974 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 07:08:47.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:08:49.694 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.974486,
17-03-18 07:08:50.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:08:50.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:08:50.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:08:50.624 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:08:51.044 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:08:51.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:08:51.074 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 07:08:51.074 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:08:51.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:08:51.234 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 07:08:51.234 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 07:08:51.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:08:51.394 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 07:08:51.394 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 07:08:51.394 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 07:08:51.524 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 07:08:51.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:08:51.924 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 07:08:51.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:08:51.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:08:52.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:08:52.014 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 07:08:52.014 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:08:53.234 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 07:08:53.234 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 07:08:53.234 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:08:53.254 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 07:08:53.254 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 07:08:53.254 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 07:08:53.404 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 07:08:53.424 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 07:08:53.424 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 07:08:53.474 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:08:53.494 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 07:08:53.494 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 07:08:53.594 -07 000000610 INF: =================== Cycle #158, Pumping Reagent USM (2) ===================
17-03-18 07:08:53.594 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 07:08:53.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:08:53.624 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 07:08:53.624 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 07:08:53.624 -07 000000610 INF: =================== Cycle #158, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 07:08:53.754 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 07:08:53.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:08:55.054 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.020806,
17-03-18 07:08:55.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:08:55.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:08:55.684 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:08:55.714 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:08:55.714 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 07:08:55.714 -07 000000610 INF: =================== Cycle #158, Pumping Reagent USM (2) ===================
17-03-18 07:08:55.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:08:55.874 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 07:08:55.874 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 07:08:56.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:08:56.034 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 07:08:56.034 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 07:08:56.034 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 07:08:56.164 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 07:08:56.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:08:56.624 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:08:56.654 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:08:56.654 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 07:08:56.654 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:08:56.924 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:08:56.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:08:57.874 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 07:08:57.874 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 07:08:57.874 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:08:57.894 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 07:08:57.894 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 07:08:57.894 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 07:08:58.044 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 07:08:58.064 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 07:08:58.064 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 07:08:58.114 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:08:58.134 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 07:08:58.134 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 07:08:58.234 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:08:58.234 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 07:08:58.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:08:58.264 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 07:08:58.264 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 07:08:58.264 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 07:08:58.394 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 07:08:58.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:08:59.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:08:59.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:08:59.334 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 07:08:59.334 -07 000000610 INF: =================== Cycle #158, Pumping Reagent PR2 (3) ===================
17-03-18 07:08:59.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:08:59.494 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 07:08:59.494 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 07:08:59.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:08:59.654 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 07:08:59.654 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 07:08:59.654 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 07:08:59.784 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 07:08:59.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:09:00.244 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:09:00.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:09:00.274 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 07:09:00.274 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:09:00.274 -07 000000487 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 07:09:00.274 -07 000000474 INF: WaitCommand(10000) start
17-03-18 07:09:00.274 -07 000000487 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 07:09:00.414 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.008536,
17-03-18 07:09:01.494 -07 000000487 INF: AsyncDelayTimer waited 1215ms
17-03-18 07:09:01.494 -07 000000487 INF: LanePump: Xmit /1?\r
17-03-18 07:09:01.524 -07 000000487 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 07:09:01.524 -07 000000487 INF: LanePump: Current Position of Pump is: 1110
17-03-18 07:09:01.654 -07 000000487 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 07:09:01.694 -07 000000487 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:09:01.924 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:09:01.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:09:03.224 -07 000000487 INF: LanePump: Xmit /1Q\r
17-03-18 07:09:03.254 -07 000000487 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:09:03.674 -07 000000487 INF: LanePump: Xmit /1Q\r
17-03-18 07:09:03.704 -07 000000487 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:09:03.704 -07 000000487 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 07:09:03.704 -07 000000487 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 07:09:03.704 -07 000000487 INF: ===================  ===================
17-03-18 07:09:05.774 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.99219,
17-03-18 07:09:06.924 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:09:06.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:09:10.284 -07 000000474 INF: WaitCommand(10000) end
17-03-18 07:09:10.284 -07 000000610 INF: =================== Cycle #158, Imaging ===================
17-03-18 07:09:10.284 -07 000000610 INF: Imaging Cycle 158: ScanTilesCommand Cycle 158 time start.
17-03-18 07:09:10.294 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 07:09:10.294 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:09:10.314 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 07:09:10.314 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 07:09:10.314 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 07:09:10.614 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 07:09:10.634 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 07:09:10.634 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 07:09:10.684 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:09:10.704 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 07:09:10.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:10.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:10.704 -07 000000012 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 07:09:10.704 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:10.704 -07 000000012 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 07:09:10.714 -07 000000501 INF: FPGA: Recv EXLED1ON 
17-03-18 07:09:10.714 -07 000000012 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:09:10.714 -07 000000012 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 07:09:10.714 -07 000000501 INF: FPGA: Recv EXLED1ADCR 23123
17-03-18 07:09:10.724 -07 000000012 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:10.724 -07 000000012 INF: RedLED: Using Red data: Photodiode ADC 23123 --> 7.4 mW (old method), or 205.0 mW (new method). Difference = 197.5 mW
17-03-18 07:09:10.724 -07 000000012 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 07:09:10.724 -07 000000455 INF: FPGA: Recv EXLED1OFF 
17-03-18 07:09:10.734 -07 000000012 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:10.734 -07 000000012 INF: RedLED: LED was on for 19 ms
17-03-18 07:09:10.734 -07 000000012 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 07:09:10.734 -07 000000012 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 07:09:10.734 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:10.734 -07 000000012 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 07:09:10.734 -07 000000501 INF: FPGA: Recv EXLED2ON 
17-03-18 07:09:10.744 -07 000000012 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:09:10.744 -07 000000012 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 07:09:10.744 -07 000000455 INF: FPGA: Recv EXLED1ADCR 2103
17-03-18 07:09:10.754 -07 000000012 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:10.754 -07 000000012 INF: GreenLED: Using Green data: Photodiode ADC 2103 --> 0.9 mW (old method), or 182.7 mW (new method). Difference = 181.8 mW
17-03-18 07:09:10.754 -07 000000012 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 07:09:10.754 -07 000000455 INF: FPGA: Recv EXLED2OFF 
17-03-18 07:09:10.764 -07 000000012 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:10.764 -07 000000012 INF: GreenLED: LED was on for 19 ms
17-03-18 07:09:10.764 -07 000000012 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 07:09:10.764 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 07:09:10.764 -07 000000447 INF: FPGA: Recv EMCUR 
17-03-18 07:09:10.774 -07 000000610 INF: FPGA: 'EMCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:09:10.774 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 07:09:11.134 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.994908,
17-03-18 07:09:11.274 -07 000000608 INF: FPGA: Recv EMOUT
17-03-18 07:09:11.274 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 07:09:11.274 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 07:09:11.274 -07 000000474 INF: FPGA: Recv EMCUR 
17-03-18 07:09:11.284 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:09:11.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 07:09:11.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.37939453125, Z-Position -0.126625504122203. ------
17-03-18 07:09:11.284 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:09:11.284 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17851 mm
17-03-18 07:09:11.284 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:09:11.284 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 07:09:11.284 -07 000000501 INF: Y Motor: Moving to 59.9126 mm, started at 75.3794 mm, delta = -15.4668 mm
17-03-18 07:09:11.284 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:09:11.284 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38996, sync = True, waitForSettling = False)
17-03-18 07:09:11.284 -07 000000447 INF: Z Motor: Moving to -0.178512 mm, started at -0.126626 mm, distance = -51.89 um
17-03-18 07:09:11.294 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:09:11.294 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:11.294 -07 000000512 INF: FPGA: Recv YRDPOS 154378
17-03-18 07:09:11.304 -07 000000501 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:11.304 -07 000000501 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:11.304 -07 000000447 INF: FPGA: Xmit ZDACW 38996\n [Z Motor]
17-03-18 07:09:11.304 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 07:09:11.304 -07 000000501 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 07:09:11.304 -07 000000501 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 07:09:11.314 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:09:11.314 -07 000000447 INF: FPGA: 'ZDACW 38996' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 07:09:11.324 -07 000000501 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 07:09:11.334 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:11.334 -07 000000608 INF: FPGA: Recv ZDACR 38996
17-03-18 07:09:11.344 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:09:11.344 -07 000000447 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 07:09:11.514 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:09:11.514 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 07:09:11.924 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:09:11.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:09:13.004 -07 000000608 INF: FPGA: Recv YMVTO 122701 24777
17-03-18 07:09:13.004 -07 000000501 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1702 ms overall
17-03-18 07:09:13.004 -07 000000501 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 07:09:13.004 -07 000000501 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-18 07:09:13.004 -07 000000501 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1702 ms, distance = 15.467 mm, average velocity = 9.087 mm/sec
17-03-18 07:09:15.854 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:15.854 -07 000000474 INF: FPGA: Recv YRDPOS 122694
17-03-18 07:09:15.864 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:15.864 -07 000000501 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:15.894 -07 000000501 INF: Y Motor: After move to 59.912609, error = -0.003429, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:09:15.894 -07 000000501 INF: Y Motor: Position error after settling = -7 encoder counts (-0.003 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 07:09:15.894 -07 000000501 INF: Y Motor: Moved to 59.9092 after 4606 ms
17-03-18 07:09:15.894 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178512 mm (DAC = 38996)
17-03-18 07:09:15.894 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:15.904 -07 000000501 INF: FPGA: Recv ZSGSRD 37082
17-03-18 07:09:15.904 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:09:15.904 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:15.904 -07 000000447 INF: FPGA: Recv ZSGSRD 37080
17-03-18 07:09:15.914 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:09:15.914 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:15.914 -07 000000455 INF: FPGA: Recv ZSGSRD 37073
17-03-18 07:09:15.924 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:15.924 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:15.924 -07 000000447 INF: FPGA: Recv ZSGSRD 37081
17-03-18 07:09:15.934 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:15.934 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:15.934 -07 000000455 INF: FPGA: Recv ZSGSRD 37075
17-03-18 07:09:15.944 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:15.944 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:15.944 -07 000000447 INF: FPGA: Recv ZSGSRD 37069
17-03-18 07:09:15.954 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:15.954 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:15.954 -07 000000447 INF: FPGA: Recv ZSGSRD 37085
17-03-18 07:09:15.964 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:15.964 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:15.964 -07 000000455 INF: FPGA: Recv ZSGSRD 37078
17-03-18 07:09:15.974 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:15.974 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:15.974 -07 000000455 INF: FPGA: Recv ZSGSRD 37076
17-03-18 07:09:15.984 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:15.984 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:15.984 -07 000000447 INF: FPGA: Recv ZSGSRD 37078
17-03-18 07:09:15.994 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:15.994 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:15.994 -07 000000447 INF: FPGA: Recv ZPIEZORD 33325
17-03-18 07:09:16.004 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:16.004 -07 000000487 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -8.3 V.
17-03-18 07:09:16.004 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37078 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37078 (-177.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 37069 (-177.6 uncal um), Max = 37085 (-177.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 07:09:16.004 -07 000000487 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37078, posNoise = 7, negNoise = 9
17-03-18 07:09:16.004 -07 000000487 INF: Z Motor: After move to -0.178512, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:16.004 -07 000000487 INF: Z Motor: Settle wait time = 4608 ms, measure time = 102 ms (allowed 150 ms), total time = 4710 ms
17-03-18 07:09:16.004 -07 000000487 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 07:09:16.054 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-18 07:09:16.054 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:09:16.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:16.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:16.054 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:16.054 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:16.054 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:09:16.054 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:16.054 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:09:16.054 -07 000000611 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 07:09:16.084 -07 000000611 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-18 07:09:16.084 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:09:16.084 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 07:09:16.084 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:09:16.104 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 07:09:16.104 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 07:09:16.104 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:09:16.154 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:09:16.454 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:09:16.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:09:16.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:09:16.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575767456, 0x0, 559484976) start.
17-03-18 07:09:16.494 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.011254,
17-03-18 07:09:16.494 -07 000000487 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:09:16.494 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 07:09:16.494 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 388 ms overall
17-03-18 07:09:16.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 575767456, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 07:09:16.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:16.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:09:16.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-18 07:09:16.594 -07 000000611 INF: Image SNR check: start
17-03-18 07:09:16.594 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:09:16.594 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:09:16.604 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:09:16.604 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:09:16.604 -07 000000611 INF: Image SNR check: pass  [peak (Max-Min)=120.07]
17-03-18 07:09:16.604 -07 000000611 INF: Autofocus start
17-03-18 07:09:16.604 -07 000000611 INF: MeasureProfile start
17-03-18 07:09:16.614 -07 000000611 INF: MeasureProfile done
17-03-18 07:09:16.614 -07 000000611 INF: X=48  Z correction [um]=0.1739867
17-03-18 07:09:16.614 -07 000000611 INF: Autofocus finished
17-03-18 07:09:16.804 -07 000000437 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:09:16.804 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:09:16.804 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9091796875, Z-position -0.178520289803348. ----------
17-03-18 07:09:16.804 -07 000000610 INF: Cycle	158	Tile	1	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:09:16.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37547, sync = True, waitForSettling = True)
17-03-18 07:09:16.814 -07 000000610 INF: Z Motor: Moving to -0.171879 mm, started at -0.178520 mm, distance = 6.64 um
17-03-18 07:09:16.814 -07 000000610 INF: FPGA: Xmit ZDACW 37547\n [Z Motor]
17-03-18 07:09:16.814 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:09:16.824 -07 000000610 INF: FPGA: 'ZDACW 37547' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:16.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:16.824 -07 000000437 INF: FPGA: Recv ZDACR 37547
17-03-18 07:09:16.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:16.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:09:16.924 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:09:16.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:09:16.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:16.984 -07 000000608 INF: FPGA: Recv ZSGSRD 36042
17-03-18 07:09:16.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:16.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:16.994 -07 000000611 INF: FPGA: Recv ZSGSRD 36043
17-03-18 07:09:17.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:17.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:17.004 -07 000000444 INF: FPGA: Recv ZSGSRD 36043
17-03-18 07:09:17.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:17.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:17.014 -07 000000437 INF: FPGA: Recv ZSGSRD 36046
17-03-18 07:09:17.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:17.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:17.024 -07 000000608 INF: FPGA: Recv ZSGSRD 36043
17-03-18 07:09:17.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:17.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:17.044 -07 000000447 INF: FPGA: Recv ZSGSRD 36051
17-03-18 07:09:17.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:09:17.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:17.054 -07 000000480 INF: FPGA: Recv ZSGSRD 36045
17-03-18 07:09:17.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:17.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:17.064 -07 000000437 INF: FPGA: Recv ZSGSRD 36046
17-03-18 07:09:17.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:17.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:17.074 -07 000000512 INF: FPGA: Recv ZSGSRD 36041
17-03-18 07:09:17.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:17.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:17.084 -07 000000501 INF: FPGA: Recv ZSGSRD 36054
17-03-18 07:09:17.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:17.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:17.094 -07 000000480 INF: FPGA: Recv ZPIEZORD 31948
17-03-18 07:09:17.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:17.104 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.729 V. Piezo Error = -9.0 V.
17-03-18 07:09:17.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36045 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36044 (-171.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36041 (-171.0 uncal um), Max = 36054 (-171.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:09:17.104 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36045, posNoise = 9, negNoise = 4
17-03-18 07:09:17.104 -07 000000610 INF: Z Motor: After move to -0.171879, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:17.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 07:09:17.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:17.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:17.104 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:17.104 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:09:17.104 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:09:17.104 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:17.104 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:09:17.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:17.104 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 07:09:17.104 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 07:09:17.104 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:09:17.104 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:09:17.114 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:09:17.114 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:09:17.124 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:09:17.124 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:09:17.134 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 07:09:17.134 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:09:17.134 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 07:09:17.134 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:09:17.144 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 07:09:17.144 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 41 ms.
17-03-18 07:09:17.144 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37724 150\n [Camera]
17-03-18 07:09:17.344 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:09:17.824 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:09:17.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:09:17.824 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:17.824 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:09:17.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:09:17.824 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:17.834 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:17.834 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:09:17.834 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:17.834 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-18 07:09:18.014 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37724 861
17-03-18 07:09:18.164 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:09:18.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 07:09:18.214 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 07:09:18.214 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:18.224 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:18.224 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 07:09:18.224 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 07:09:18.224 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:18.224 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:18.224 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 07:09:18.234 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 07:09:18.394 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:09:18.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:09:18.394 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:18.394 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:09:18.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:09:18.404 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:18.524 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:18.524 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 07:09:18.524 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:18.524 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 590443536, 0x0, 418435064) start.
17-03-18 07:09:18.584 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:09:18.584 -07 000000487 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:09:18.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37724 150' command took 2 ms to send, 1428 ms to get response, and 1439 ms overall
17-03-18 07:09:18.594 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172098
17-03-18 07:09:18.594 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17210 mm
17-03-18 07:09:18.594 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:09:18.594 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 07:09:18.594 -07 000000611 INF: Y Motor: Moving to 60.7426 mm, started at 59.9092 mm, delta = 0.8334 mm
17-03-18 07:09:18.594 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:18.594 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 37595, sync = True, waitForSettling = False)
17-03-18 07:09:18.594 -07 000000012 INF: Z Motor: Moving to -0.172099 mm, started at -0.171884 mm, distance = -0.21 um
17-03-18 07:09:18.594 -07 000000579 INF: FPGA: Recv YRDPOS 122694
17-03-18 07:09:18.604 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:09:18.604 -07 000000611 INF: Y Motor: Encoder = 122694 = motor step 95854.7 = 59.9092 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:18.604 -07 000000611 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:09:18.604 -07 000000611 INF: Y Motor: Moving 1333 steps0
17-03-18 07:09:18.604 -07 000000012 INF: FPGA: Xmit ZDACW 37595\n [Z Motor]
17-03-18 07:09:18.604 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 07:09:18.614 -07 000000012 INF: FPGA: 'ZDACW 37595' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 07:09:18.614 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:09:18.624 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:18.624 -07 000000455 INF: FPGA: Recv ZDACR 37595
17-03-18 07:09:18.634 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:09:18.634 -07 000000012 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 07:09:18.924 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 07:09:18.924 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 07:09:18.924 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:18.924 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 590443536, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 07:09:18.924 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 07:09:18.924 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:18.934 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 07:09:18.934 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-18 07:09:18.934 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 07:09:18.944 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 540 ms.
17-03-18 07:09:18.994 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 07:09:18.994 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 07:09:19.034 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:19.034 -07 000000579 INF: FPGA: Recv YRDPOS 124378
17-03-18 07:09:19.044 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:09:19.044 -07 000000611 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:19.044 -07 000000611 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 07:09:19.044 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.833 mm, average velocity = 2.142 mm/sec
17-03-18 07:09:19.994 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:19.994 -07 000000012 INF: FPGA: Recv YRDPOS 124379
17-03-18 07:09:20.004 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.004 -07 000000611 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:20.034 -07 000000611 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:09:20.034 -07 000000611 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:09:20.034 -07 000000611 INF: Y Motor: Moved to 60.7319 after 1441 ms (table move)
17-03-18 07:09:20.034 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172099 mm (DAC = 37595)
17-03-18 07:09:20.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.044 -07 000000444 INF: FPGA: Recv ZSGSRD 36076
17-03-18 07:09:20.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 07:09:20.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.044 -07 000000437 INF: FPGA: Recv ZSGSRD 36080
17-03-18 07:09:20.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:09:20.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.054 -07 000000611 INF: FPGA: Recv ZSGSRD 36075
17-03-18 07:09:20.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.064 -07 000000480 INF: FPGA: Recv ZSGSRD 36072
17-03-18 07:09:20.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.074 -07 000000444 INF: FPGA: Recv ZSGSRD 36078
17-03-18 07:09:20.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.084 -07 000000487 INF: FPGA: Recv ZSGSRD 36082
17-03-18 07:09:20.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.094 -07 000000474 INF: FPGA: Recv ZSGSRD 36083
17-03-18 07:09:20.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.104 -07 000000437 INF: FPGA: Recv ZSGSRD 36085
17-03-18 07:09:20.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.114 -07 000000608 INF: FPGA: Recv ZSGSRD 36089
17-03-18 07:09:20.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.124 -07 000000512 INF: FPGA: Recv ZSGSRD 36077
17-03-18 07:09:20.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:20.134 -07 000000474 INF: FPGA: Recv ZPIEZORD 32041
17-03-18 07:09:20.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.144 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.737 V. Piezo Error = -8.9 V.
17-03-18 07:09:20.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36080 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36079 (-171.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36072 (-171.2 uncal um), Max = 36089 (-171.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:09:20.144 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36080, posNoise = 9, negNoise = 8
17-03-18 07:09:20.144 -07 000000610 INF: Z Motor: After move to -0.172099, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:20.144 -07 000000610 INF: Z Motor: Settle wait time = 1444 ms, measure time = 101 ms (allowed 150 ms), total time = 1545 ms
17-03-18 07:09:20.144 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 07:09:20.194 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-18 07:09:20.194 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:09:20.194 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.17210892608587. ----------
17-03-18 07:09:20.194 -07 000000610 INF: Cycle	158	Tile	2	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:09:20.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37418, sync = True, waitForSettling = True)
17-03-18 07:09:20.194 -07 000000610 INF: Z Motor: Moving to -0.171289 mm, started at -0.172109 mm, distance = 0.82 um
17-03-18 07:09:20.194 -07 000000610 INF: FPGA: Xmit ZDACW 37418\n [Z Motor]
17-03-18 07:09:20.194 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:09:20.204 -07 000000610 INF: FPGA: 'ZDACW 37418' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:09:20.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:20.204 -07 000000512 INF: FPGA: Recv ZDACR 37418
17-03-18 07:09:20.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:09:20.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.364 -07 000000474 INF: FPGA: Recv ZSGSRD 35955
17-03-18 07:09:20.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:20.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.374 -07 000000480 INF: FPGA: Recv ZSGSRD 35948
17-03-18 07:09:20.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.384 -07 000000512 INF: FPGA: Recv ZSGSRD 35947
17-03-18 07:09:20.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.394 -07 000000444 INF: FPGA: Recv ZSGSRD 35948
17-03-18 07:09:20.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.404 -07 000000437 INF: FPGA: Recv ZSGSRD 35951
17-03-18 07:09:20.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.414 -07 000000447 INF: FPGA: Recv ZSGSRD 35956
17-03-18 07:09:20.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.424 -07 000000487 INF: FPGA: Recv ZSGSRD 35948
17-03-18 07:09:20.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.434 -07 000000455 INF: FPGA: Recv ZSGSRD 35959
17-03-18 07:09:20.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.444 -07 000000437 INF: FPGA: Recv ZSGSRD 35953
17-03-18 07:09:20.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:20.454 -07 000000480 INF: FPGA: Recv ZSGSRD 35954
17-03-18 07:09:20.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:20.464 -07 000000512 INF: FPGA: Recv ZPIEZORD 31852
17-03-18 07:09:20.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:20.474 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.710 V. Piezo Error = -9.1 V.
17-03-18 07:09:20.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35952 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35952 (-170.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35947 (-170.4 uncal um), Max = 35959 (-170.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:09:20.474 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35952, posNoise = 7, negNoise = 5
17-03-18 07:09:20.474 -07 000000610 INF: Z Motor: After move to -0.171289, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:20.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 07:09:20.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:20.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:20.474 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:20.474 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:20.474 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:09:20.474 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:20.474 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:09:20.474 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:09:20.474 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:09:20.474 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:09:20.474 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:09:20.474 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:09:20.484 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:09:20.484 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:09:20.484 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 07:09:20.484 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:09:20.494 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:09:20.494 -07 000000487 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:09:20.494 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:09:20.494 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:09:20.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37595 150\n [Camera]
17-03-18 07:09:20.704 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:09:21.174 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:09:21.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:09:21.174 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:21.174 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:21.174 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 07:09:21.174 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:09:21.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:09:21.174 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:21.184 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:21.184 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:09:21.364 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37595 861
17-03-18 07:09:21.514 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:09:21.574 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 07:09:21.574 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 07:09:21.574 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:21.584 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 07:09:21.584 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 07:09:21.584 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:21.584 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:21.584 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 07:09:21.584 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:21.594 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 07:09:21.744 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:09:21.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:09:21.744 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:21.744 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:21.744 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 07:09:21.754 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:09:21.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:09:21.754 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:21.754 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:21.754 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 07:09:21.854 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.996267,
17-03-18 07:09:21.924 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:09:21.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:09:21.934 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:09:21.944 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:09:21.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37595 150' command took 2 ms to send, 1430 ms to get response, and 1440 ms overall
17-03-18 07:09:21.944 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172065
17-03-18 07:09:21.944 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17206 mm
17-03-18 07:09:21.944 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:09:21.944 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 07:09:21.944 -07 000000455 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 07:09:21.944 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:21.944 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 37588, sync = True, waitForSettling = False)
17-03-18 07:09:21.944 -07 000000444 INF: Z Motor: Moving to -0.172067 mm, started at -0.171287 mm, distance = -0.78 um
17-03-18 07:09:21.944 -07 000000447 INF: FPGA: Recv YRDPOS 124379
17-03-18 07:09:21.954 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:09:21.954 -07 000000455 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:21.954 -07 000000455 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:09:21.954 -07 000000455 INF: Y Motor: Moving 1345 steps-23
17-03-18 07:09:21.954 -07 000000444 INF: FPGA: Xmit ZDACW 37588\n [Z Motor]
17-03-18 07:09:21.954 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 07:09:21.964 -07 000000444 INF: FPGA: 'ZDACW 37588' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 07:09:21.964 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:21.964 -07 000000480 INF: FPGA: Recv ZDACR 37588
17-03-18 07:09:21.974 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:09:21.974 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:21.974 -07 000000444 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 07:09:22.154 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 07:09:22.154 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 07:09:22.154 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:22.154 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 07:09:22.154 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 07:09:22.154 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:22.154 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:22.154 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 07:09:22.164 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:22.164 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 07:09:22.344 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 07:09:22.344 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 07:09:22.404 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:22.404 -07 000000608 INF: FPGA: Recv YRDPOS 126080
17-03-18 07:09:22.414 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:09:22.414 -07 000000455 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:22.414 -07 000000455 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 07:09:22.414 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.112 mm/sec
17-03-18 07:09:23.364 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:23.364 -07 000000437 INF: FPGA: Recv YRDPOS 126080
17-03-18 07:09:23.374 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:23.374 -07 000000455 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:23.404 -07 000000455 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:09:23.404 -07 000000455 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:09:23.404 -07 000000455 INF: Y Motor: Moved to 61.5625 after 1458 ms (table move)
17-03-18 07:09:23.404 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172067 mm (DAC = 37588)
17-03-18 07:09:23.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.404 -07 000000608 INF: FPGA: Recv ZSGSRD 36073
17-03-18 07:09:23.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:09:23.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.414 -07 000000512 INF: FPGA: Recv ZSGSRD 36071
17-03-18 07:09:23.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.424 -07 000000447 INF: FPGA: Recv ZSGSRD 36078
17-03-18 07:09:23.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.434 -07 000000590 INF: FPGA: Recv ZSGSRD 36076
17-03-18 07:09:23.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.444 -07 000000608 INF: FPGA: Recv ZSGSRD 36072
17-03-18 07:09:23.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.454 -07 000000579 INF: FPGA: Recv ZSGSRD 36072
17-03-18 07:09:23.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.464 -07 000000474 INF: FPGA: Recv ZSGSRD 36069
17-03-18 07:09:23.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.474 -07 000000480 INF: FPGA: Recv ZSGSRD 36076
17-03-18 07:09:23.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.484 -07 000000590 INF: FPGA: Recv ZSGSRD 36074
17-03-18 07:09:23.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.494 -07 000000012 INF: FPGA: Recv ZSGSRD 36077
17-03-18 07:09:23.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:23.504 -07 000000608 INF: FPGA: Recv ZPIEZORD 32035
17-03-18 07:09:23.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.514 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.736 V. Piezo Error = -8.9 V.
17-03-18 07:09:23.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36074 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36074 (-171.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36069 (-171.2 uncal um), Max = 36078 (-171.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:09:23.514 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36074, posNoise = 4, negNoise = 5
17-03-18 07:09:23.514 -07 000000610 INF: Z Motor: After move to -0.172067, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:23.514 -07 000000610 INF: Z Motor: Settle wait time = 1460 ms, measure time = 105 ms (allowed 150 ms), total time = 1565 ms
17-03-18 07:09:23.514 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:09:23.564 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 07:09:23.564 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:09:23.564 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.17207038081302. ----------
17-03-18 07:09:23.564 -07 000000610 INF: Cycle	158	Tile	3	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:09:23.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37411, sync = True, waitForSettling = True)
17-03-18 07:09:23.564 -07 000000610 INF: Z Motor: Moving to -0.171257 mm, started at -0.172070 mm, distance = 0.81 um
17-03-18 07:09:23.564 -07 000000610 INF: FPGA: Xmit ZDACW 37411\n [Z Motor]
17-03-18 07:09:23.564 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 07:09:23.574 -07 000000610 INF: FPGA: 'ZDACW 37411' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:09:23.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:23.574 -07 000000012 INF: FPGA: Recv ZDACR 37411
17-03-18 07:09:23.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:09:23.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.734 -07 000000608 INF: FPGA: Recv ZSGSRD 35951
17-03-18 07:09:23.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:23.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.744 -07 000000480 INF: FPGA: Recv ZSGSRD 35953
17-03-18 07:09:23.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.754 -07 000000444 INF: FPGA: Recv ZSGSRD 35951
17-03-18 07:09:23.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.764 -07 000000474 INF: FPGA: Recv ZSGSRD 35947
17-03-18 07:09:23.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.774 -07 000000512 INF: FPGA: Recv ZSGSRD 35945
17-03-18 07:09:23.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.784 -07 000000487 INF: FPGA: Recv ZSGSRD 35949
17-03-18 07:09:23.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.794 -07 000000447 INF: FPGA: Recv ZSGSRD 35948
17-03-18 07:09:23.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.804 -07 000000437 INF: FPGA: Recv ZSGSRD 35950
17-03-18 07:09:23.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.814 -07 000000480 INF: FPGA: Recv ZSGSRD 35946
17-03-18 07:09:23.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:23.824 -07 000000512 INF: FPGA: Recv ZSGSRD 35952
17-03-18 07:09:23.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:23.834 -07 000000447 INF: FPGA: Recv ZPIEZORD 31861
17-03-18 07:09:23.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:23.844 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.709 V. Piezo Error = -9.0 V.
17-03-18 07:09:23.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35949 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35950 (-170.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35945 (-170.4 uncal um), Max = 35953 (-170.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:09:23.844 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35949, posNoise = 4, negNoise = 4
17-03-18 07:09:23.844 -07 000000610 INF: Z Motor: After move to -0.171257, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:23.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:09:23.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:23.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:23.844 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:23.844 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:09:23.844 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:23.844 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:23.844 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:09:23.844 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:09:23.844 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:09:23.844 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:09:23.844 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:09:23.844 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:09:23.844 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:09:23.844 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:09:23.844 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:09:23.854 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:09:23.864 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:09:23.864 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:09:23.864 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:09:23.864 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:09:23.874 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37588 150\n [Camera]
17-03-18 07:09:24.064 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:09:24.544 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:09:24.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:09:24.544 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:24.544 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:24.544 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 07:09:24.544 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:09:24.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:09:24.544 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:24.684 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:24.684 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) start.
17-03-18 07:09:24.734 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37588 861
17-03-18 07:09:24.884 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:09:24.934 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 07:09:24.934 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:09:24.934 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:24.934 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:24.934 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:09:25.054 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 07:09:25.054 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 07:09:25.054 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:25.054 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 07:09:25.064 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-18 07:09:25.114 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:09:25.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:09:25.114 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:25.114 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:25.114 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 07:09:25.124 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:09:25.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:09:25.124 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:25.124 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:25.124 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 07:09:25.304 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-18 07:09:25.304 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:09:25.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37588 150' command took 2 ms to send, 1429 ms to get response, and 1439 ms overall
17-03-18 07:09:25.314 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171517
17-03-18 07:09:25.314 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17152 mm
17-03-18 07:09:25.314 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:09:25.314 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 07:09:25.314 -07 000000501 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 07:09:25.314 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37468, sync = True, waitForSettling = False)
17-03-18 07:09:25.314 -07 000000512 INF: Z Motor: Moving to -0.171518 mm, started at -0.171267 mm, distance = -0.25 um
17-03-18 07:09:25.314 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:25.314 -07 000000608 INF: FPGA: Recv YRDPOS 126080
17-03-18 07:09:25.324 -07 000000512 INF: FPGA: Xmit ZDACW 37468\n [Z Motor]
17-03-18 07:09:25.324 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:09:25.324 -07 000000501 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:25.324 -07 000000501 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:09:25.324 -07 000000501 INF: Y Motor: Moving 1344 steps-21
17-03-18 07:09:25.324 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 07:09:25.334 -07 000000512 INF: FPGA: 'ZDACW 37468' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 07:09:25.334 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:09:25.344 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:25.344 -07 000000579 INF: FPGA: Recv ZDACR 37468
17-03-18 07:09:25.354 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:09:25.354 -07 000000512 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 07:09:25.504 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 07:09:25.504 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:09:25.504 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:25.504 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 07:09:25.504 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 07:09:25.504 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:25.504 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:09:25.504 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 07:09:25.504 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:09:25.514 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 07:09:25.704 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 07:09:25.704 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 07:09:25.764 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:25.764 -07 000000474 INF: FPGA: Recv YRDPOS 127783
17-03-18 07:09:25.774 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:09:25.774 -07 000000501 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:25.774 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 07:09:25.774 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.171 mm/sec
17-03-18 07:09:26.724 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:26.724 -07 000000437 INF: FPGA: Recv YRDPOS 127783
17-03-18 07:09:26.734 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:26.734 -07 000000501 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:26.764 -07 000000501 INF: Y Motor: After move to 62.402607, error = -0.008564, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:09:26.764 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:09:26.764 -07 000000501 INF: Y Motor: Moved to 62.3940 after 1448 ms (table move)
17-03-18 07:09:26.764 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171518 mm (DAC = 37468)
17-03-18 07:09:26.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:26.774 -07 000000447 INF: FPGA: Recv ZSGSRD 35989
17-03-18 07:09:26.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:09:26.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:26.774 -07 000000590 INF: FPGA: Recv ZSGSRD 35989
17-03-18 07:09:26.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:09:26.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:26.784 -07 000000541 INF: FPGA: Recv ZSGSRD 35984
17-03-18 07:09:26.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:26.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:26.794 -07 000000480 INF: FPGA: Recv ZSGSRD 35991
17-03-18 07:09:26.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:26.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:26.804 -07 000000608 INF: FPGA: Recv ZSGSRD 35982
17-03-18 07:09:26.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:26.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:26.814 -07 000000455 INF: FPGA: Recv ZSGSRD 35990
17-03-18 07:09:26.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:26.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:26.824 -07 000000501 INF: FPGA: Recv ZSGSRD 35999
17-03-18 07:09:26.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:26.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:26.834 -07 000000608 INF: FPGA: Recv ZSGSRD 35988
17-03-18 07:09:26.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:26.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:26.844 -07 000000012 INF: FPGA: Recv ZSGSRD 35989
17-03-18 07:09:26.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:26.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:26.854 -07 000000474 INF: FPGA: Recv ZSGSRD 35986
17-03-18 07:09:26.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:26.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:26.864 -07 000000608 INF: FPGA: Recv ZPIEZORD 31894
17-03-18 07:09:26.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:26.874 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -9.0 V.
17-03-18 07:09:26.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35989 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35989 (-170.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35982 (-170.6 uncal um), Max = 35999 (-170.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:09:26.874 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35989, posNoise = 10, negNoise = 7
17-03-18 07:09:26.874 -07 000000610 INF: Z Motor: After move to -0.171518, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:26.874 -07 000000610 INF: Z Motor: Settle wait time = 1452 ms, measure time = 102 ms (allowed 150 ms), total time = 1554 ms
17-03-18 07:09:26.874 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 07:09:26.924 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 07:09:26.924 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:09:26.924 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39404296875, Z-position -0.17152432278097. ----------
17-03-18 07:09:26.924 -07 000000610 INF: Cycle	158	Tile	4	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:09:26.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37291, sync = True, waitForSettling = True)
17-03-18 07:09:26.924 -07 000000610 INF: Z Motor: Moving to -0.170707 mm, started at -0.171524 mm, distance = 0.82 um
17-03-18 07:09:26.924 -07 000000610 INF: FPGA: Xmit ZDACW 37291\n [Z Motor]
17-03-18 07:09:26.924 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:09:26.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:09:26.924 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:09:26.934 -07 000000610 INF: FPGA: 'ZDACW 37291' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:09:26.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:26.934 -07 000000487 INF: FPGA: Recv ZDACR 37291
17-03-18 07:09:26.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:09:26.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:09:27.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:27.094 -07 000000611 INF: FPGA: Recv ZSGSRD 35864
17-03-18 07:09:27.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:27.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:27.104 -07 000000480 INF: FPGA: Recv ZSGSRD 35859
17-03-18 07:09:27.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:27.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:27.114 -07 000000541 INF: FPGA: Recv ZSGSRD 35868
17-03-18 07:09:27.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:27.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:27.124 -07 000000512 INF: FPGA: Recv ZSGSRD 35869
17-03-18 07:09:27.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:27.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:27.134 -07 000000444 INF: FPGA: Recv ZSGSRD 35862
17-03-18 07:09:27.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:27.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:27.144 -07 000000455 INF: FPGA: Recv ZSGSRD 35864
17-03-18 07:09:27.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:27.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:27.154 -07 000000474 INF: FPGA: Recv ZSGSRD 35869
17-03-18 07:09:27.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:27.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:27.164 -07 000000447 INF: FPGA: Recv ZSGSRD 35856
17-03-18 07:09:27.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:27.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:27.174 -07 000000487 INF: FPGA: Recv ZSGSRD 35864
17-03-18 07:09:27.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:27.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:27.184 -07 000000444 INF: FPGA: Recv ZSGSRD 35861
17-03-18 07:09:27.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:27.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:27.194 -07 000000512 INF: FPGA: Recv ZPIEZORD 31708
17-03-18 07:09:27.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:27.204 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.690 V. Piezo Error = -9.2 V.
17-03-18 07:09:27.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35864 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35864 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35856 (-169.8 uncal um), Max = 35869 (-169.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:09:27.204 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35864, posNoise = 5, negNoise = 8
17-03-18 07:09:27.204 -07 000000610 INF: Z Motor: After move to -0.170707, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:27.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:09:27.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:27.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:27.204 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:27.204 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:27.204 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:09:27.204 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:27.204 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:09:27.204 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:09:27.204 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 07:09:27.204 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:09:27.204 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 07:09:27.204 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:09:27.214 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.012614,
17-03-18 07:09:27.214 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:09:27.214 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:09:27.214 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:09:27.214 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:09:27.224 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 07:09:27.224 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:09:27.224 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 07:09:27.224 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:09:27.234 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37468 150\n [Camera]
17-03-18 07:09:27.424 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:09:27.904 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:09:27.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:09:27.904 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:27.904 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:27.904 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 07:09:27.904 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:09:27.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:09:27.904 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:27.904 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:27.904 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 07:09:28.094 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37468 861
17-03-18 07:09:28.244 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:09:28.284 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 07:09:28.284 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 07:09:28.284 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:28.284 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 07:09:28.284 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 07:09:28.284 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:28.284 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:28.284 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 07:09:28.284 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:28.294 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 07:09:28.474 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:09:28.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:09:28.474 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:28.474 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:28.474 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 07:09:28.484 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:09:28.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:09:28.484 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:28.614 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:28.614 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) start.
17-03-18 07:09:28.664 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:09:28.664 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:09:28.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37468 150' command took 2 ms to send, 1429 ms to get response, and 1440 ms overall
17-03-18 07:09:28.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 07:09:28.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39404296875, Z-Position -0.17072129626325. ------
17-03-18 07:09:28.674 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:09:28.674 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17720 mm
17-03-18 07:09:28.674 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:09:28.674 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 38708, sync = True, waitForSettling = False)
17-03-18 07:09:28.674 -07 000000487 INF: Z Motor: Moving to -0.177194 mm, started at -0.170721 mm, distance = -6.47 um
17-03-18 07:09:28.674 -07 000000611 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 07:09:28.674 -07 000000611 INF: Y Motor: Moving to 63.2326 mm, started at 62.3940 mm, delta = 0.8386 mm
17-03-18 07:09:28.674 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:09:28.684 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:09:28.684 -07 000000487 INF: FPGA: Xmit ZDACW 38708\n [Z Motor]
17-03-18 07:09:28.684 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:09:28.694 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:28.694 -07 000000487 INF: FPGA: 'ZDACW 38708' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 07:09:28.694 -07 000000501 INF: FPGA: Recv YRDPOS 127784
17-03-18 07:09:28.704 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:09:28.704 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 07:09:28.704 -07 000000611 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:28.704 -07 000000611 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:09:28.704 -07 000000611 INF: Y Motor: Moving 1341 steps-18
17-03-18 07:09:28.714 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:28.714 -07 000000444 INF: FPGA: Recv ZDACR 38708
17-03-18 07:09:28.724 -07 000000611 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:09:28.724 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:09:28.724 -07 000000487 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 07:09:28.864 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 07:09:28.864 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:09:28.864 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:28.874 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:28.874 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 07:09:28.904 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:09:28.904 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 07:09:28.994 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 07:09:28.994 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 07:09:28.994 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:28.994 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:29.004 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 07:09:29.094 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 07:09:29.094 -07 000000611 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 07:09:29.154 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:29.154 -07 000000487 INF: FPGA: Recv YRDPOS 129480
17-03-18 07:09:29.164 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:09:29.164 -07 000000611 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:29.164 -07 000000611 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 07:09:29.164 -07 000000611 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.839 mm, average velocity = 2.145 mm/sec
17-03-18 07:09:30.114 -07 000000611 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:30.114 -07 000000480 INF: FPGA: Recv YRDPOS 129480
17-03-18 07:09:30.124 -07 000000611 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:30.124 -07 000000611 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:30.154 -07 000000611 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:09:30.154 -07 000000611 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:09:30.154 -07 000000611 INF: Y Motor: Moved to 63.2227 after 1475 ms (table move)
17-03-18 07:09:30.154 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177194 mm (DAC = 38708)
17-03-18 07:09:30.154 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:30.164 -07 000000579 INF: FPGA: Recv ZSGSRD 36873
17-03-18 07:09:30.164 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 07:09:30.164 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:30.164 -07 000000455 INF: FPGA: Recv ZSGSRD 36870
17-03-18 07:09:30.174 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:09:30.174 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:30.174 -07 000000541 INF: FPGA: Recv ZSGSRD 36875
17-03-18 07:09:30.184 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:30.184 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:30.184 -07 000000611 INF: FPGA: Recv ZSGSRD 36869
17-03-18 07:09:30.194 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:30.194 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:30.194 -07 000000579 INF: FPGA: Recv ZSGSRD 36870
17-03-18 07:09:30.204 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:30.204 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:30.204 -07 000000541 INF: FPGA: Recv ZSGSRD 36870
17-03-18 07:09:30.214 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:30.214 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:30.214 -07 000000512 INF: FPGA: Recv ZSGSRD 36874
17-03-18 07:09:30.224 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:30.224 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:30.224 -07 000000444 INF: FPGA: Recv ZSGSRD 36873
17-03-18 07:09:30.234 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:30.234 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:30.234 -07 000000579 INF: FPGA: Recv ZSGSRD 36875
17-03-18 07:09:30.244 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:30.244 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:30.244 -07 000000455 INF: FPGA: Recv ZSGSRD 36875
17-03-18 07:09:30.254 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:30.254 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:30.254 -07 000000437 INF: FPGA: Recv ZPIEZORD 33090
17-03-18 07:09:30.264 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:30.264 -07 000000012 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.906 V. Piezo Error = -8.4 V.
17-03-18 07:09:30.264 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36872 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36873 (-176.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36869 (-176.3 uncal um), Max = 36875 (-176.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 07:09:30.264 -07 000000012 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36872, posNoise = 3, negNoise = 3
17-03-18 07:09:30.264 -07 000000012 INF: Z Motor: After move to -0.177194, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:30.264 -07 000000012 INF: Z Motor: Settle wait time = 1478 ms, measure time = 105 ms (allowed 150 ms), total time = 1583 ms
17-03-18 07:09:30.264 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:09:30.314 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 07:09:30.314 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:09:30.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:30.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:30.314 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:30.314 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:30.314 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:09:30.314 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:30.314 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:09:30.314 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:09:30.324 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:09:30.324 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:09:30.334 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 07:09:30.334 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 07:09:30.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:09:30.384 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:09:30.684 -07 000000447 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:09:30.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:09:30.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:09:30.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) start.
17-03-18 07:09:30.724 -07 000000608 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:09:30.724 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 07:09:30.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 386 ms overall
17-03-18 07:09:30.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 07:09:30.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:30.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:09:30.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 07:09:30.824 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:09:30.824 -07 000000541 INF: Autofocus start
17-03-18 07:09:30.824 -07 000000541 INF: MeasureProfile start
17-03-18 07:09:30.824 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:09:30.834 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:09:30.834 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:09:30.834 -07 000000541 INF: MeasureProfile done
17-03-18 07:09:30.834 -07 000000541 INF: X=48  Z correction [um]=0.1739867
17-03-18 07:09:30.834 -07 000000541 INF: Autofocus finished
17-03-18 07:09:31.034 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:09:31.034 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:09:31.034 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.177196902102145. ----------
17-03-18 07:09:31.044 -07 000000610 INF: Cycle	158	Tile	5	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:09:31.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37259, sync = True, waitForSettling = True)
17-03-18 07:09:31.044 -07 000000610 INF: Z Motor: Moving to -0.170561 mm, started at -0.177197 mm, distance = 6.64 um
17-03-18 07:09:31.044 -07 000000610 INF: FPGA: Xmit ZDACW 37259\n [Z Motor]
17-03-18 07:09:31.044 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 07:09:31.054 -07 000000610 INF: FPGA: 'ZDACW 37259' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:09:31.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:31.054 -07 000000608 INF: FPGA: Recv ZDACR 37259
17-03-18 07:09:31.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:31.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:09:31.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:31.214 -07 000000608 INF: FPGA: Recv ZSGSRD 35837
17-03-18 07:09:31.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:31.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:31.224 -07 000000487 INF: FPGA: Recv ZSGSRD 35839
17-03-18 07:09:31.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:31.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:31.234 -07 000000512 INF: FPGA: Recv ZSGSRD 35844
17-03-18 07:09:31.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:31.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:31.244 -07 000000501 INF: FPGA: Recv ZSGSRD 35835
17-03-18 07:09:31.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:31.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:31.254 -07 000000012 INF: FPGA: Recv ZSGSRD 35838
17-03-18 07:09:31.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:31.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:31.264 -07 000000487 INF: FPGA: Recv ZSGSRD 35845
17-03-18 07:09:31.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:31.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:31.274 -07 000000474 INF: FPGA: Recv ZSGSRD 35838
17-03-18 07:09:31.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:31.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:31.284 -07 000000590 INF: FPGA: Recv ZSGSRD 35846
17-03-18 07:09:31.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:31.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:31.294 -07 000000437 INF: FPGA: Recv ZSGSRD 35843
17-03-18 07:09:31.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:31.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:31.304 -07 000000611 INF: FPGA: Recv ZSGSRD 35843
17-03-18 07:09:31.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:31.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:31.314 -07 000000541 INF: FPGA: Recv ZPIEZORD 31698
17-03-18 07:09:31.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:31.324 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.685 V. Piezo Error = -9.1 V.
17-03-18 07:09:31.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35841 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35841 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35835 (-169.7 uncal um), Max = 35846 (-169.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:09:31.324 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35841, posNoise = 5, negNoise = 6
17-03-18 07:09:31.324 -07 000000610 INF: Z Motor: After move to -0.170561, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:31.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 07:09:31.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:31.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:31.324 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:31.324 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:09:31.324 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:09:31.324 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:09:31.324 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:31.324 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:31.324 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 07:09:31.324 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:09:31.324 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:09:31.324 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:09:31.334 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:09:31.334 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:09:31.334 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:09:31.334 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:09:31.344 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:09:31.344 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:09:31.344 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 07:09:31.344 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:09:31.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37436 150\n [Camera]
17-03-18 07:09:31.544 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:09:31.924 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:09:31.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:09:32.024 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:09:32.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:09:32.024 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:32.024 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:32.024 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 07:09:32.024 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:09:32.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:09:32.024 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:32.024 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:32.024 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 07:09:32.214 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37436 861
17-03-18 07:09:32.364 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:09:32.394 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 07:09:32.394 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 07:09:32.394 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:32.404 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:32.404 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 07:09:32.404 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:09:32.404 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:32.414 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 07:09:32.414 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:32.414 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 07:09:32.584 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.971733,
17-03-18 07:09:32.594 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:09:32.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:09:32.594 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:32.594 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:32.594 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 07:09:32.594 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:09:32.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:09:32.594 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:32.594 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:32.594 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 07:09:32.784 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:09:32.784 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:09:32.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37436 150' command took 2 ms to send, 1435 ms to get response, and 1439 ms overall
17-03-18 07:09:32.784 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.170838
17-03-18 07:09:32.784 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17084 mm
17-03-18 07:09:32.784 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:09:32.904 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 37320, sync = True, waitForSettling = False)
17-03-18 07:09:32.904 -07 000000487 INF: Z Motor: Moving to -0.170840 mm, started at -0.170574 mm, distance = -0.27 um
17-03-18 07:09:32.904 -07 000000487 INF: FPGA: Xmit ZDACW 37320\n [Z Motor]
17-03-18 07:09:32.914 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 07:09:32.914 -07 000000590 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-18 07:09:32.914 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:09:32.924 -07 000000487 INF: FPGA: 'ZDACW 37320' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:32.924 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:32.924 -07 000000541 INF: FPGA: Recv ZDACR 37320
17-03-18 07:09:32.934 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:32.934 -07 000000487 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 07:09:32.934 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:32.934 -07 000000608 INF: FPGA: Recv YRDPOS 129480
17-03-18 07:09:32.944 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:09:32.944 -07 000000590 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:32.944 -07 000000590 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:09:32.944 -07 000000590 INF: Y Motor: Moving 1344 steps-20
17-03-18 07:09:32.944 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:09:32.974 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 07:09:32.984 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:09:32.984 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:32.984 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 07:09:32.984 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 07:09:32.984 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:32.984 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:32.984 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 07:09:32.984 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 07:09:32.994 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 07:09:33.314 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 07:09:33.314 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 07:09:33.374 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:33.374 -07 000000512 INF: FPGA: Recv YRDPOS 131186
17-03-18 07:09:33.384 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:09:33.384 -07 000000590 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:33.384 -07 000000590 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 07:09:33.384 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.222 mm/sec
17-03-18 07:09:34.334 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:34.334 -07 000000487 INF: FPGA: Recv YRDPOS 131186
17-03-18 07:09:34.344 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:34.344 -07 000000590 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:34.374 -07 000000590 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:09:34.374 -07 000000590 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:09:34.374 -07 000000590 INF: Y Motor: Moved to 64.0557 after 1463 ms (table move)
17-03-18 07:09:34.374 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170840 mm (DAC = 37320)
17-03-18 07:09:34.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.374 -07 000000611 INF: FPGA: Recv ZSGSRD 35891
17-03-18 07:09:34.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:09:34.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.384 -07 000000447 INF: FPGA: Recv ZSGSRD 35878
17-03-18 07:09:34.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.394 -07 000000455 INF: FPGA: Recv ZSGSRD 35881
17-03-18 07:09:34.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.404 -07 000000541 INF: FPGA: Recv ZSGSRD 35876
17-03-18 07:09:34.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.414 -07 000000487 INF: FPGA: Recv ZSGSRD 35884
17-03-18 07:09:34.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.424 -07 000000590 INF: FPGA: Recv ZSGSRD 35887
17-03-18 07:09:34.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.434 -07 000000501 INF: FPGA: Recv ZSGSRD 35889
17-03-18 07:09:34.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.444 -07 000000447 INF: FPGA: Recv ZSGSRD 35890
17-03-18 07:09:34.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.454 -07 000000455 INF: FPGA: Recv ZSGSRD 35882
17-03-18 07:09:34.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.464 -07 000000474 INF: FPGA: Recv ZSGSRD 35887
17-03-18 07:09:34.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:34.474 -07 000000447 INF: FPGA: Recv ZPIEZORD 31814
17-03-18 07:09:34.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.484 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.695 V. Piezo Error = -9.0 V.
17-03-18 07:09:34.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35884 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35886 (-170.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35876 (-169.9 uncal um), Max = 35891 (-170.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:09:34.484 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35884, posNoise = 7, negNoise = 8
17-03-18 07:09:34.484 -07 000000610 INF: Z Motor: After move to -0.170840, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:34.484 -07 000000610 INF: Z Motor: Settle wait time = 1466 ms, measure time = 105 ms (allowed 150 ms), total time = 1571 ms
17-03-18 07:09:34.484 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:09:34.534 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1742 ms
17-03-18 07:09:34.534 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:09:34.534 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.170849780506085. ----------
17-03-18 07:09:34.534 -07 000000610 INF: Cycle	158	Tile	6	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:09:34.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37143, sync = True, waitForSettling = True)
17-03-18 07:09:34.534 -07 000000610 INF: Z Motor: Moving to -0.170030 mm, started at -0.170850 mm, distance = 0.82 um
17-03-18 07:09:34.534 -07 000000610 INF: FPGA: Xmit ZDACW 37143\n [Z Motor]
17-03-18 07:09:34.534 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 07:09:34.544 -07 000000610 INF: FPGA: 'ZDACW 37143' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:09:34.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:34.544 -07 000000512 INF: FPGA: Recv ZDACR 37143
17-03-18 07:09:34.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:09:34.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.704 -07 000000611 INF: FPGA: Recv ZSGSRD 35760
17-03-18 07:09:34.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.714 -07 000000444 INF: FPGA: Recv ZSGSRD 35757
17-03-18 07:09:34.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.724 -07 000000590 INF: FPGA: Recv ZSGSRD 35757
17-03-18 07:09:34.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.734 -07 000000608 INF: FPGA: Recv ZSGSRD 35760
17-03-18 07:09:34.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.744 -07 000000512 INF: FPGA: Recv ZSGSRD 35765
17-03-18 07:09:34.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.754 -07 000000444 INF: FPGA: Recv ZSGSRD 35759
17-03-18 07:09:34.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.764 -07 000000590 INF: FPGA: Recv ZSGSRD 35760
17-03-18 07:09:34.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.774 -07 000000474 INF: FPGA: Recv ZSGSRD 35757
17-03-18 07:09:34.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.784 -07 000000512 INF: FPGA: Recv ZSGSRD 35760
17-03-18 07:09:34.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:34.794 -07 000000501 INF: FPGA: Recv ZSGSRD 35756
17-03-18 07:09:34.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:34.804 -07 000000579 INF: FPGA: Recv ZPIEZORD 31627
17-03-18 07:09:34.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:34.814 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -9.1 V.
17-03-18 07:09:34.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35759 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35760 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35756 (-169.2 uncal um), Max = 35765 (-169.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 07:09:34.814 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35759, posNoise = 6, negNoise = 3
17-03-18 07:09:34.814 -07 000000610 INF: Z Motor: After move to -0.170030, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:34.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:09:34.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:34.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:34.814 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:34.814 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:34.814 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:09:34.814 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:34.814 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:09:34.814 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:09:34.814 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:09:34.814 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:09:34.814 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:09:34.814 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:09:34.824 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:09:34.824 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:09:34.824 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:09:34.824 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:09:34.834 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:09:34.834 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:09:34.834 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 07:09:34.834 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:09:34.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37320 150\n [Camera]
17-03-18 07:09:35.034 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:09:35.514 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:09:35.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:09:35.514 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:35.514 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:09:35.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:09:35.514 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:35.514 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:35.514 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) start.
17-03-18 07:09:35.524 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:35.524 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:09:35.704 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37320 861
17-03-18 07:09:35.854 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:09:35.894 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 07:09:35.894 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 07:09:35.894 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:35.894 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 07:09:35.894 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 07:09:35.894 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:35.894 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:35.894 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:09:35.894 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:35.904 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 07:09:36.084 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:09:36.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:09:36.084 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:36.084 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:36.084 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 07:09:36.084 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:09:36.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:09:36.084 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:36.084 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:36.084 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 07:09:36.274 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:09:36.274 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:09:36.274 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37320 150' command took 2 ms to send, 1434 ms to get response, and 1440 ms overall
17-03-18 07:09:36.274 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170376
17-03-18 07:09:36.274 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17038 mm
17-03-18 07:09:36.274 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:09:36.274 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 07:09:36.274 -07 000000480 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 07:09:36.274 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:36.274 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 37219, sync = True, waitForSettling = False)
17-03-18 07:09:36.274 -07 000000611 INF: Z Motor: Moving to -0.170378 mm, started at -0.170047 mm, distance = -0.33 um
17-03-18 07:09:36.284 -07 000000611 INF: FPGA: Xmit ZDACW 37219\n [Z Motor]
17-03-18 07:09:36.284 -07 000000541 INF: FPGA: Recv YRDPOS 131186
17-03-18 07:09:36.284 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 07:09:36.284 -07 000000480 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:36.284 -07 000000480 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:09:36.284 -07 000000480 INF: Y Motor: Moving 1339 steps-14
17-03-18 07:09:36.284 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 07:09:36.294 -07 000000611 INF: FPGA: 'ZDACW 37219' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:36.294 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:09:36.304 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:36.304 -07 000000579 INF: FPGA: Recv ZDACR 37219
17-03-18 07:09:36.314 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:09:36.314 -07 000000611 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 07:09:36.474 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 07:09:36.484 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 07:09:36.484 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:36.484 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 07:09:36.484 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 07:09:36.484 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:36.484 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:36.484 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 07:09:36.484 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:36.494 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 07:09:36.664 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 07:09:36.664 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 07:09:36.724 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:36.724 -07 000000501 INF: FPGA: Recv YRDPOS 132869
17-03-18 07:09:36.734 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:09:36.734 -07 000000480 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:36.734 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 07:09:36.734 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.837 mm, average velocity = 2.168 mm/sec
17-03-18 07:09:36.924 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:09:36.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:09:37.684 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:37.684 -07 000000608 INF: FPGA: Recv YRDPOS 132869
17-03-18 07:09:37.694 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:37.694 -07 000000480 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:37.724 -07 000000480 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:09:37.724 -07 000000480 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:09:37.724 -07 000000480 INF: Y Motor: Moved to 64.8774 after 1444 ms (table move)
17-03-18 07:09:37.724 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170378 mm (DAC = 37219)
17-03-18 07:09:37.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:37.724 -07 000000590 INF: FPGA: Recv ZSGSRD 35821
17-03-18 07:09:37.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:09:37.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:37.734 -07 000000590 INF: FPGA: Recv ZSGSRD 35815
17-03-18 07:09:37.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:37.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:37.744 -07 000000480 INF: FPGA: Recv ZSGSRD 35813
17-03-18 07:09:37.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:37.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:37.754 -07 000000608 INF: FPGA: Recv ZSGSRD 35810
17-03-18 07:09:37.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:37.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:37.764 -07 000000512 INF: FPGA: Recv ZSGSRD 35813
17-03-18 07:09:37.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:37.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:37.774 -07 000000455 INF: FPGA: Recv ZSGSRD 35811
17-03-18 07:09:37.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:37.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:37.784 -07 000000437 INF: FPGA: Recv ZSGSRD 35812
17-03-18 07:09:37.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:37.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:37.794 -07 000000608 INF: FPGA: Recv ZSGSRD 35815
17-03-18 07:09:37.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:37.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:37.804 -07 000000444 INF: FPGA: Recv ZSGSRD 35813
17-03-18 07:09:37.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:37.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:37.814 -07 000000455 INF: FPGA: Recv ZSGSRD 35814
17-03-18 07:09:37.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:37.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:37.824 -07 000000487 INF: FPGA: Recv ZPIEZORD 31697
17-03-18 07:09:37.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:37.834 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.679 V. Piezo Error = -9.1 V.
17-03-18 07:09:37.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35814 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35813 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35810 (-169.5 uncal um), Max = 35821 (-169.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:09:37.834 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35814, posNoise = 7, negNoise = 4
17-03-18 07:09:37.834 -07 000000610 INF: Z Motor: After move to -0.170378, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:37.834 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-18 07:09:37.834 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:09:37.884 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 07:09:37.884 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:09:37.884 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.170400085656162. ----------
17-03-18 07:09:37.884 -07 000000610 INF: Cycle	158	Tile	7	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:09:37.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37042, sync = True, waitForSettling = True)
17-03-18 07:09:37.884 -07 000000610 INF: Z Motor: Moving to -0.169567 mm, started at -0.170400 mm, distance = 0.83 um
17-03-18 07:09:37.884 -07 000000610 INF: FPGA: Xmit ZDACW 37042\n [Z Motor]
17-03-18 07:09:37.884 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 07:09:37.894 -07 000000610 INF: FPGA: 'ZDACW 37042' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:09:37.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:37.894 -07 000000447 INF: FPGA: Recv ZDACR 37042
17-03-18 07:09:37.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:37.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:09:37.944 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.98264,
17-03-18 07:09:38.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:38.054 -07 000000608 INF: FPGA: Recv ZSGSRD 35692
17-03-18 07:09:38.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:38.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:38.064 -07 000000480 INF: FPGA: Recv ZSGSRD 35685
17-03-18 07:09:38.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:38.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:38.074 -07 000000012 INF: FPGA: Recv ZSGSRD 35685
17-03-18 07:09:38.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:38.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:38.084 -07 000000447 INF: FPGA: Recv ZSGSRD 35681
17-03-18 07:09:38.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:38.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:38.094 -07 000000474 INF: FPGA: Recv ZSGSRD 35688
17-03-18 07:09:38.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:38.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:38.104 -07 000000608 INF: FPGA: Recv ZSGSRD 35683
17-03-18 07:09:38.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:38.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:38.114 -07 000000480 INF: FPGA: Recv ZSGSRD 35684
17-03-18 07:09:38.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:38.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:38.124 -07 000000487 INF: FPGA: Recv ZSGSRD 35690
17-03-18 07:09:38.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:38.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:38.134 -07 000000447 INF: FPGA: Recv ZSGSRD 35684
17-03-18 07:09:38.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:38.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:38.144 -07 000000608 INF: FPGA: Recv ZSGSRD 35690
17-03-18 07:09:38.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:38.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:38.154 -07 000000480 INF: FPGA: Recv ZPIEZORD 31534
17-03-18 07:09:38.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:38.164 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -9.2 V.
17-03-18 07:09:38.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35686 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35685 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35681 (-168.7 uncal um), Max = 35692 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:09:38.164 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35686, posNoise = 6, negNoise = 5
17-03-18 07:09:38.164 -07 000000610 INF: Z Motor: After move to -0.169567, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:38.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:09:38.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:38.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:38.164 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:38.164 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:09:38.164 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:09:38.164 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:09:38.164 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:38.164 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:38.164 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 07:09:38.164 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:09:38.164 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:09:38.164 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:09:38.174 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:09:38.174 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:09:38.174 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:09:38.174 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:09:38.184 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:09:38.184 -07 000000447 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:09:38.184 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 07:09:38.184 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:09:38.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37219 150\n [Camera]
17-03-18 07:09:38.384 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:09:38.864 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 669
17-03-18 07:09:38.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 669
17-03-18 07:09:38.864 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:38.864 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:38.864 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 07:09:38.864 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 669
17-03-18 07:09:38.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 669
17-03-18 07:09:38.864 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:38.874 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:38.874 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 07:09:39.054 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37219 861
17-03-18 07:09:39.204 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:09:39.244 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 07:09:39.244 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 07:09:39.244 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:39.244 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 07:09:39.244 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 07:09:39.244 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:39.254 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:39.254 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 07:09:39.254 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:39.254 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:09:39.434 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:09:39.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:09:39.434 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:39.434 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:39.434 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 07:09:39.444 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:09:39.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:09:39.444 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:39.444 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:39.444 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 07:09:39.624 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:09:39.624 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:09:39.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37219 150' command took 2 ms to send, 1429 ms to get response, and 1439 ms overall
17-03-18 07:09:39.634 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170311
17-03-18 07:09:39.634 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17031 mm
17-03-18 07:09:39.634 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:09:39.634 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 07:09:39.634 -07 000000487 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 07:09:39.634 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:39.634 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37204, sync = True, waitForSettling = False)
17-03-18 07:09:39.634 -07 000000501 INF: Z Motor: Moving to -0.170309 mm, started at -0.169578 mm, distance = -0.73 um
17-03-18 07:09:39.634 -07 000000474 INF: FPGA: Recv YRDPOS 132869
17-03-18 07:09:39.644 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:09:39.644 -07 000000487 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:39.644 -07 000000487 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:09:39.644 -07 000000487 INF: Y Motor: Moving 1352 steps-31
17-03-18 07:09:39.644 -07 000000501 INF: FPGA: Xmit ZDACW 37204\n [Z Motor]
17-03-18 07:09:39.644 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:09:39.654 -07 000000501 INF: FPGA: 'ZDACW 37204' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 07:09:39.654 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:39.654 -07 000000512 INF: FPGA: Recv ZDACR 37204
17-03-18 07:09:39.664 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:39.664 -07 000000501 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 07:09:39.664 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:09:39.824 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 07:09:39.824 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 07:09:39.824 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:39.824 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:39.824 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 07:09:39.824 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 07:09:39.824 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 07:09:39.824 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:39.824 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:39.834 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 07:09:40.034 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 07:09:40.034 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-18 07:09:40.094 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:40.094 -07 000000444 INF: FPGA: Recv YRDPOS 134580
17-03-18 07:09:40.104 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:09:40.104 -07 000000487 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:40.104 -07 000000487 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 07:09:40.104 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.118 mm/sec
17-03-18 07:09:41.054 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:41.054 -07 000000480 INF: FPGA: Recv YRDPOS 134580
17-03-18 07:09:41.064 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.064 -07 000000487 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:41.104 -07 000000487 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:09:41.104 -07 000000487 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:09:41.104 -07 000000487 INF: Y Motor: Moved to 65.7129 after 1469 ms (table move)
17-03-18 07:09:41.104 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170309 mm (DAC = 37204)
17-03-18 07:09:41.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.104 -07 000000512 INF: FPGA: Recv ZSGSRD 35798
17-03-18 07:09:41.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:09:41.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.114 -07 000000012 INF: FPGA: Recv ZSGSRD 35798
17-03-18 07:09:41.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.124 -07 000000608 INF: FPGA: Recv ZSGSRD 35796
17-03-18 07:09:41.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.134 -07 000000501 INF: FPGA: Recv ZSGSRD 35797
17-03-18 07:09:41.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.144 -07 000000437 INF: FPGA: Recv ZSGSRD 35803
17-03-18 07:09:41.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.154 -07 000000447 INF: FPGA: Recv ZSGSRD 35803
17-03-18 07:09:41.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.164 -07 000000608 INF: FPGA: Recv ZSGSRD 35806
17-03-18 07:09:41.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.174 -07 000000487 INF: FPGA: Recv ZSGSRD 35800
17-03-18 07:09:41.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.184 -07 000000437 INF: FPGA: Recv ZSGSRD 35799
17-03-18 07:09:41.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.194 -07 000000474 INF: FPGA: Recv ZSGSRD 35803
17-03-18 07:09:41.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:41.204 -07 000000611 INF: FPGA: Recv ZPIEZORD 31666
17-03-18 07:09:41.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.214 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -9.1 V.
17-03-18 07:09:41.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35800 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35800 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35796 (-169.4 uncal um), Max = 35806 (-169.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:09:41.214 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35800, posNoise = 6, negNoise = 4
17-03-18 07:09:41.214 -07 000000610 INF: Z Motor: After move to -0.170309, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:41.214 -07 000000610 INF: Z Motor: Settle wait time = 1471 ms, measure time = 105 ms (allowed 150 ms), total time = 1576 ms
17-03-18 07:09:41.214 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:09:41.264 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 07:09:41.264 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:09:41.264 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.170310146686177. ----------
17-03-18 07:09:41.264 -07 000000610 INF: Cycle	158	Tile	8	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:09:41.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37028, sync = True, waitForSettling = True)
17-03-18 07:09:41.264 -07 000000610 INF: Z Motor: Moving to -0.169503 mm, started at -0.170310 mm, distance = 0.81 um
17-03-18 07:09:41.264 -07 000000610 INF: FPGA: Xmit ZDACW 37028\n [Z Motor]
17-03-18 07:09:41.264 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 07:09:41.274 -07 000000610 INF: FPGA: 'ZDACW 37028' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:09:41.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:41.274 -07 000000590 INF: FPGA: Recv ZDACR 37028
17-03-18 07:09:41.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:09:41.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.434 -07 000000437 INF: FPGA: Recv ZSGSRD 35672
17-03-18 07:09:41.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:41.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.444 -07 000000480 INF: FPGA: Recv ZSGSRD 35678
17-03-18 07:09:41.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.454 -07 000000608 INF: FPGA: Recv ZSGSRD 35677
17-03-18 07:09:41.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.464 -07 000000444 INF: FPGA: Recv ZSGSRD 35675
17-03-18 07:09:41.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.474 -07 000000447 INF: FPGA: Recv ZSGSRD 35681
17-03-18 07:09:41.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.484 -07 000000501 INF: FPGA: Recv ZSGSRD 35674
17-03-18 07:09:41.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.494 -07 000000608 INF: FPGA: Recv ZSGSRD 35681
17-03-18 07:09:41.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.504 -07 000000444 INF: FPGA: Recv ZSGSRD 35671
17-03-18 07:09:41.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.514 -07 000000512 INF: FPGA: Recv ZSGSRD 35671
17-03-18 07:09:41.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:41.524 -07 000000579 INF: FPGA: Recv ZSGSRD 35679
17-03-18 07:09:41.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:41.534 -07 000000608 INF: FPGA: Recv ZPIEZORD 31478
17-03-18 07:09:41.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:41.544 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -9.3 V.
17-03-18 07:09:41.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35676 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35676 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35671 (-168.6 uncal um), Max = 35681 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:09:41.544 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35676, posNoise = 5, negNoise = 5
17-03-18 07:09:41.544 -07 000000610 INF: Z Motor: After move to -0.169503, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:41.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 07:09:41.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:41.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:41.544 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:41.544 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:09:41.544 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:41.544 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:09:41.544 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:09:41.544 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:09:41.544 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:09:41.544 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:41.544 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 07:09:41.544 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:09:41.544 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:09:41.544 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:09:41.554 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:09:41.554 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:09:41.564 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 07:09:41.564 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 07:09:41.564 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 07:09:41.564 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:09:41.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37204 150\n [Camera]
17-03-18 07:09:41.764 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:09:41.924 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:09:41.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:09:42.244 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:09:42.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:09:42.244 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:42.244 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:42.244 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 07:09:42.244 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:09:42.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:09:42.244 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:42.244 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:42.244 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 07:09:42.434 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37204 861
17-03-18 07:09:42.584 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:09:42.624 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 07:09:42.624 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 07:09:42.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:09:42.624 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 07:09:42.624 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:42.624 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:42.634 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:42.634 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:09:42.634 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 07:09:42.634 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 07:09:42.814 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:09:42.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:09:42.814 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:42.824 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:42.824 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) start.
17-03-18 07:09:42.824 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:09:42.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:09:42.824 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:42.824 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:42.824 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 07:09:43.004 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-18 07:09:43.004 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:09:43.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37204 150' command took 2 ms to send, 1427 ms to get response, and 1439 ms overall
17-03-18 07:09:43.014 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 07:09:43.014 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.169513544380599. ------
17-03-18 07:09:43.014 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:09:43.014 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17589 mm
17-03-18 07:09:43.014 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:09:43.014 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:09:43.014 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 07:09:43.014 -07 000000501 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 07:09:43.024 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38423, sync = True, waitForSettling = False)
17-03-18 07:09:43.024 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:09:43.024 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:43.024 -07 000000012 INF: Z Motor: Moving to -0.175889 mm, started at -0.169514 mm, distance = -6.38 um
17-03-18 07:09:43.024 -07 000000579 INF: FPGA: Recv YRDPOS 134580
17-03-18 07:09:43.034 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 07:09:43.034 -07 000000501 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:43.034 -07 000000501 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:09:43.034 -07 000000501 INF: Y Motor: Moving 1344 steps-20
17-03-18 07:09:43.034 -07 000000012 INF: FPGA: Xmit ZDACW 38423\n [Z Motor]
17-03-18 07:09:43.034 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 07:09:43.044 -07 000000012 INF: FPGA: 'ZDACW 38423' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 07:09:43.044 -07 000000487 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:09:43.054 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:09:43.064 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:43.064 -07 000000480 INF: FPGA: Recv ZDACR 38423
17-03-18 07:09:43.074 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:09:43.074 -07 000000012 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 07:09:43.194 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 07:09:43.194 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 07:09:43.194 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:43.204 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:43.204 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:09:43.204 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:09:43.204 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 07:09:43.204 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:43.204 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:43.214 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 07:09:43.244 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:09:43.244 -07 000000487 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-18 07:09:43.304 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.031682,
17-03-18 07:09:43.424 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 07:09:43.424 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:09:43.484 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:43.484 -07 000000437 INF: FPGA: Recv YRDPOS 136270
17-03-18 07:09:43.494 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:09:43.494 -07 000000501 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:43.494 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 07:09:43.494 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 07:09:44.444 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:44.444 -07 000000590 INF: FPGA: Recv YRDPOS 136270
17-03-18 07:09:44.454 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:44.454 -07 000000501 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:44.484 -07 000000501 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:09:44.484 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:09:44.484 -07 000000501 INF: Y Motor: Moved to 66.5381 after 1467 ms (table move)
17-03-18 07:09:44.484 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175889 mm (DAC = 38423)
17-03-18 07:09:44.484 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:44.494 -07 000000487 INF: FPGA: Recv ZSGSRD 36667
17-03-18 07:09:44.494 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:09:44.494 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:44.494 -07 000000611 INF: FPGA: Recv ZSGSRD 36673
17-03-18 07:09:44.504 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:09:44.504 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:44.504 -07 000000512 INF: FPGA: Recv ZSGSRD 36669
17-03-18 07:09:44.514 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:44.514 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:44.514 -07 000000501 INF: FPGA: Recv ZSGSRD 36663
17-03-18 07:09:44.524 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:44.524 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:44.524 -07 000000590 INF: FPGA: Recv ZSGSRD 36672
17-03-18 07:09:44.534 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:44.534 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:44.534 -07 000000541 INF: FPGA: Recv ZSGSRD 36670
17-03-18 07:09:44.544 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:44.544 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:44.544 -07 000000012 INF: FPGA: Recv ZSGSRD 36665
17-03-18 07:09:44.554 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:44.554 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:44.554 -07 000000501 INF: FPGA: Recv ZSGSRD 36675
17-03-18 07:09:44.564 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:44.564 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:44.564 -07 000000590 INF: FPGA: Recv ZSGSRD 36665
17-03-18 07:09:44.574 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:44.574 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:44.574 -07 000000480 INF: FPGA: Recv ZSGSRD 36669
17-03-18 07:09:44.584 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:44.584 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:44.584 -07 000000012 INF: FPGA: Recv ZPIEZORD 32820
17-03-18 07:09:44.594 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:44.594 -07 000000608 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.863 V. Piezo Error = -8.5 V.
17-03-18 07:09:44.594 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36669 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36669 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36663 (-175.0 uncal um), Max = 36675 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:09:44.594 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36669, posNoise = 6, negNoise = 6
17-03-18 07:09:44.594 -07 000000608 INF: Z Motor: After move to -0.175889, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:44.594 -07 000000608 INF: Z Motor: Settle wait time = 1466 ms, measure time = 102 ms (allowed 150 ms), total time = 1568 ms
17-03-18 07:09:44.594 -07 000000608 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 07:09:44.644 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 07:09:44.644 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:09:44.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:44.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:44.644 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:44.644 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:09:44.644 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:44.644 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:44.644 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:09:44.644 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:09:44.654 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 07:09:44.654 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:09:44.664 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 07:09:44.664 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 07:09:44.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:09:44.704 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:09:45.004 -07 000000611 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:09:45.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:09:45.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:09:45.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) start.
17-03-18 07:09:45.044 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:09:45.044 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 07:09:45.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 07:09:45.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 07:09:45.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:45.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:09:45.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 07:09:45.244 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:09:45.244 -07 000000541 INF: Autofocus start
17-03-18 07:09:45.244 -07 000000541 INF: MeasureProfile start
17-03-18 07:09:45.244 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:09:45.254 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:09:45.254 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:09:45.254 -07 000000541 INF: MeasureProfile done
17-03-18 07:09:45.254 -07 000000541 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 07:09:45.254 -07 000000541 INF: Autofocus finished
17-03-18 07:09:45.454 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:09:45.454 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:09:45.454 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175892787037367. ----------
17-03-18 07:09:45.454 -07 000000610 INF: Cycle	158	Tile	9	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:09:45.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36848, sync = True, waitForSettling = True)
17-03-18 07:09:45.464 -07 000000610 INF: Z Motor: Moving to -0.168679 mm, started at -0.175893 mm, distance = 7.21 um
17-03-18 07:09:45.464 -07 000000610 INF: FPGA: Xmit ZDACW 36848\n [Z Motor]
17-03-18 07:09:45.464 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:09:45.474 -07 000000610 INF: FPGA: 'ZDACW 36848' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:09:45.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:45.474 -07 000000611 INF: FPGA: Recv ZDACR 36848
17-03-18 07:09:45.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:45.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:09:45.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:45.634 -07 000000541 INF: FPGA: Recv ZSGSRD 35545
17-03-18 07:09:45.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:45.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:45.644 -07 000000437 INF: FPGA: Recv ZSGSRD 35557
17-03-18 07:09:45.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:45.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:45.654 -07 000000608 INF: FPGA: Recv ZSGSRD 35549
17-03-18 07:09:45.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:45.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:45.664 -07 000000590 INF: FPGA: Recv ZSGSRD 35546
17-03-18 07:09:45.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:45.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:45.674 -07 000000447 INF: FPGA: Recv ZSGSRD 35547
17-03-18 07:09:45.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:45.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:45.684 -07 000000541 INF: FPGA: Recv ZSGSRD 35548
17-03-18 07:09:45.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:45.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:45.694 -07 000000608 INF: FPGA: Recv ZSGSRD 35547
17-03-18 07:09:45.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:45.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:45.704 -07 000000512 INF: FPGA: Recv ZSGSRD 35544
17-03-18 07:09:45.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:45.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:45.714 -07 000000447 INF: FPGA: Recv ZSGSRD 35550
17-03-18 07:09:45.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:45.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:45.724 -07 000000541 INF: FPGA: Recv ZSGSRD 35555
17-03-18 07:09:45.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:45.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:45.734 -07 000000608 INF: FPGA: Recv ZPIEZORD 31319
17-03-18 07:09:45.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:45.744 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.623 V. Piezo Error = -9.3 V.
17-03-18 07:09:45.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35549 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35548 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35544 (-167.8 uncal um), Max = 35557 (-167.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:09:45.744 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35549, posNoise = 8, negNoise = 5
17-03-18 07:09:45.744 -07 000000610 INF: Z Motor: After move to -0.168679, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:45.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 07:09:45.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:45.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:45.744 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:45.744 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:45.744 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:09:45.744 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:09:45.744 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:09:45.744 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:45.744 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:09:45.744 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:09:45.744 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:09:45.744 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:09:45.754 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:09:45.754 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:09:45.754 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:09:45.754 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:09:45.764 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:09:45.764 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:09:45.764 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:09:45.764 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:09:45.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37024 150\n [Camera]
17-03-18 07:09:45.964 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:09:46.444 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:09:46.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:09:46.444 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:46.444 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:46.444 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 07:09:46.444 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:09:46.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:09:46.454 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:46.454 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:46.454 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:09:46.634 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37024 861
17-03-18 07:09:46.784 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:09:46.824 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:09:46.824 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 07:09:46.824 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 07:09:46.824 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 07:09:46.824 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:46.824 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:46.834 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:09:46.834 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:09:46.834 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:09:46.844 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 07:09:46.964 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:09:46.964 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:09:47.014 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:09:47.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:09:47.014 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:47.024 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:09:47.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:09:47.024 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:47.024 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:47.024 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) start.
17-03-18 07:09:47.024 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:47.024 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 07:09:47.204 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:09:47.204 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:09:47.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37024 150' command took 2 ms to send, 1429 ms to get response, and 1439 ms overall
17-03-18 07:09:47.214 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169573
17-03-18 07:09:47.214 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16957 mm
17-03-18 07:09:47.214 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:09:47.214 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 37043, sync = True, waitForSettling = False)
17-03-18 07:09:47.214 -07 000000474 INF: Z Motor: Moving to -0.169572 mm, started at -0.168698 mm, distance = -0.87 um
17-03-18 07:09:47.214 -07 000000474 INF: FPGA: Xmit ZDACW 37043\n [Z Motor]
17-03-18 07:09:47.214 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 07:09:47.214 -07 000000579 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 07:09:47.224 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:47.224 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 07:09:47.224 -07 000000474 INF: FPGA: 'ZDACW 37043' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 07:09:47.224 -07 000000455 INF: FPGA: Recv YRDPOS 136270
17-03-18 07:09:47.234 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 07:09:47.234 -07 000000579 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:47.234 -07 000000579 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:09:47.234 -07 000000579 INF: Y Motor: Moving 1351 steps-30
17-03-18 07:09:47.234 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:47.234 -07 000000608 INF: FPGA: Recv ZDACR 37043
17-03-18 07:09:47.244 -07 000000474 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 07:09:47.244 -07 000000474 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 07:09:47.244 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:09:47.404 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 07:09:47.404 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 07:09:47.404 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:47.404 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:09:47.404 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 07:09:47.404 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:47.404 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:47.404 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:09:47.404 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:47.414 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 07:09:47.614 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 07:09:47.614 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 07:09:47.674 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:47.674 -07 000000012 INF: FPGA: Recv YRDPOS 137975
17-03-18 07:09:47.684 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:09:47.684 -07 000000579 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:47.684 -07 000000579 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 07:09:47.684 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-18 07:09:48.634 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:48.634 -07 000000512 INF: FPGA: Recv YRDPOS 137976
17-03-18 07:09:48.644 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:48.644 -07 000000579 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:48.664 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.019446,
17-03-18 07:09:48.674 -07 000000579 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:09:48.674 -07 000000579 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:09:48.674 -07 000000579 INF: Y Motor: Moved to 67.3711 after 1458 ms (table move)
17-03-18 07:09:48.674 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169572 mm (DAC = 37043)
17-03-18 07:09:48.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:48.694 -07 000000501 INF: FPGA: Recv ZSGSRD 35679
17-03-18 07:09:48.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 07:09:48.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:48.704 -07 000000579 INF: FPGA: Recv ZSGSRD 35688
17-03-18 07:09:48.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:48.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:48.724 -07 000000474 INF: FPGA: Recv ZSGSRD 35685
17-03-18 07:09:48.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:09:48.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:48.734 -07 000000611 INF: FPGA: Recv ZSGSRD 35690
17-03-18 07:09:48.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:48.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:48.744 -07 000000455 INF: FPGA: Recv ZSGSRD 35686
17-03-18 07:09:48.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:48.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:48.754 -07 000000480 INF: FPGA: Recv ZSGSRD 35691
17-03-18 07:09:48.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:48.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:48.764 -07 000000444 INF: FPGA: Recv ZSGSRD 35687
17-03-18 07:09:48.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:48.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:48.774 -07 000000487 INF: FPGA: Recv ZSGSRD 35682
17-03-18 07:09:48.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:48.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:48.784 -07 000000447 INF: FPGA: Recv ZSGSRD 35688
17-03-18 07:09:48.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:48.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:48.794 -07 000000480 INF: FPGA: Recv ZSGSRD 35688
17-03-18 07:09:48.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:48.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:48.804 -07 000000512 INF: FPGA: Recv ZPIEZORD 31523
17-03-18 07:09:48.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:48.814 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -9.2 V.
17-03-18 07:09:48.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35686 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35688 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35679 (-168.7 uncal um), Max = 35691 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:09:48.814 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35686, posNoise = 5, negNoise = 7
17-03-18 07:09:48.814 -07 000000610 INF: Z Motor: After move to -0.169572, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:48.814 -07 000000610 INF: Z Motor: Settle wait time = 1462 ms, measure time = 131 ms (allowed 150 ms), total time = 1593 ms
17-03-18 07:09:48.814 -07 000000610 INF: Z Motor: Waiting extra 19 ms after reading position to reach expected total of 150 ms
17-03-18 07:09:48.834 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 07:09:48.834 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:09:48.834 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.169577786502016. ----------
17-03-18 07:09:48.834 -07 000000610 INF: Cycle	158	Tile	10	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:09:48.834 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36867, sync = True, waitForSettling = True)
17-03-18 07:09:48.834 -07 000000610 INF: Z Motor: Moving to -0.168766 mm, started at -0.169578 mm, distance = 0.81 um
17-03-18 07:09:48.834 -07 000000610 INF: FPGA: Xmit ZDACW 36867\n [Z Motor]
17-03-18 07:09:48.834 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:09:48.844 -07 000000610 INF: FPGA: 'ZDACW 36867' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:09:48.844 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:48.844 -07 000000590 INF: FPGA: Recv ZDACR 36867
17-03-18 07:09:48.854 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:48.854 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:09:49.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:49.004 -07 000000455 INF: FPGA: Recv ZSGSRD 35561
17-03-18 07:09:49.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:49.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:49.014 -07 000000541 INF: FPGA: Recv ZSGSRD 35560
17-03-18 07:09:49.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:49.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:49.024 -07 000000608 INF: FPGA: Recv ZSGSRD 35554
17-03-18 07:09:49.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:49.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:49.034 -07 000000437 INF: FPGA: Recv ZSGSRD 35560
17-03-18 07:09:49.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:49.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:49.044 -07 000000455 INF: FPGA: Recv ZSGSRD 35563
17-03-18 07:09:49.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:49.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:49.054 -07 000000541 INF: FPGA: Recv ZSGSRD 35564
17-03-18 07:09:49.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:49.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:49.064 -07 000000608 INF: FPGA: Recv ZSGSRD 35560
17-03-18 07:09:49.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:49.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:49.074 -07 000000590 INF: FPGA: Recv ZSGSRD 35558
17-03-18 07:09:49.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:49.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:49.084 -07 000000455 INF: FPGA: Recv ZSGSRD 35555
17-03-18 07:09:49.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:49.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:49.094 -07 000000541 INF: FPGA: Recv ZSGSRD 35562
17-03-18 07:09:49.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:49.104 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:49.104 -07 000000012 INF: FPGA: Recv ZPIEZORD 31375
17-03-18 07:09:49.114 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:49.114 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -9.2 V.
17-03-18 07:09:49.114 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35560 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35560 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35554 (-167.9 uncal um), Max = 35564 (-167.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:09:49.114 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35560, posNoise = 4, negNoise = 6
17-03-18 07:09:49.114 -07 000000610 INF: Z Motor: After move to -0.168766, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:49.114 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 07:09:49.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:49.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:49.114 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:49.114 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:09:49.114 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:09:49.114 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:49.114 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:09:49.114 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:49.114 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:09:49.114 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 07:09:49.114 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:09:49.114 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:09:49.124 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:09:49.124 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:09:49.124 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:09:49.124 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:09:49.134 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:09:49.134 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:09:49.134 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 07:09:49.134 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 07:09:49.134 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37043 150\n [Camera]
17-03-18 07:09:49.334 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:09:49.804 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:09:49.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:09:49.814 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:49.814 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:49.814 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 07:09:49.814 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:09:49.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:09:49.814 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:49.814 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:49.814 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:09:50.004 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37043 861
17-03-18 07:09:50.154 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:09:50.194 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 07:09:50.194 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 07:09:50.194 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:50.194 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 07:09:50.194 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:09:50.194 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:50.194 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:50.204 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:50.204 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 07:09:50.204 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 07:09:50.384 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:09:50.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:09:50.384 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:50.384 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:50.384 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 07:09:50.384 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:09:50.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:09:50.384 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:50.514 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:50.514 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) start.
17-03-18 07:09:50.574 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:09:50.574 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:09:50.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37043 150' command took 2 ms to send, 1433 ms to get response, and 1439 ms overall
17-03-18 07:09:50.574 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.168970
17-03-18 07:09:50.574 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16897 mm
17-03-18 07:09:50.574 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:09:50.574 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 07:09:50.574 -07 000000541 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 07:09:50.574 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:50.574 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 36911, sync = True, waitForSettling = False)
17-03-18 07:09:50.574 -07 000000474 INF: Z Motor: Moving to -0.168968 mm, started at -0.168768 mm, distance = -0.20 um
17-03-18 07:09:50.584 -07 000000474 INF: FPGA: Xmit ZDACW 36911\n [Z Motor]
17-03-18 07:09:50.584 -07 000000455 INF: FPGA: Recv YRDPOS 137976
17-03-18 07:09:50.584 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:09:50.584 -07 000000541 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:50.584 -07 000000541 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:09:50.584 -07 000000541 INF: Y Motor: Moving 1346 steps-25
17-03-18 07:09:50.584 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 07:09:50.594 -07 000000474 INF: FPGA: 'ZDACW 36911' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 07:09:50.594 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:50.594 -07 000000012 INF: FPGA: Recv ZDACR 36911
17-03-18 07:09:50.604 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:50.604 -07 000000474 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 07:09:50.604 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:09:50.764 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 07:09:50.764 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 07:09:50.764 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:50.774 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:50.774 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 07:09:50.894 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 07:09:50.894 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 07:09:50.894 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:50.894 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:09:50.904 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-18 07:09:50.974 -07 000000487 INF: FPGA: Recv YMVTILE
17-03-18 07:09:50.974 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 07:09:51.034 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:51.034 -07 000000474 INF: FPGA: Recv YRDPOS 139681
17-03-18 07:09:51.044 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:09:51.044 -07 000000541 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:51.044 -07 000000541 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 07:09:51.044 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.120 mm/sec
17-03-18 07:09:51.924 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:09:51.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:09:51.994 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:51.994 -07 000000012 INF: FPGA: Recv YRDPOS 139681
17-03-18 07:09:52.004 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:52.004 -07 000000541 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:52.034 -07 000000541 INF: Y Motor: After move to 68.212608, error = -0.008995, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:09:52.034 -07 000000541 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:09:52.034 -07 000000541 INF: Y Motor: Moved to 68.2036 after 1454 ms (table move)
17-03-18 07:09:52.034 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168968 mm (DAC = 36911)
17-03-18 07:09:52.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.034 -07 000000474 INF: FPGA: Recv ZSGSRD 35593
17-03-18 07:09:52.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:09:52.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.044 -07 000000579 INF: FPGA: Recv ZSGSRD 35589
17-03-18 07:09:52.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.054 -07 000000437 INF: FPGA: Recv ZSGSRD 35588
17-03-18 07:09:52.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.064 -07 000000541 INF: FPGA: Recv ZSGSRD 35584
17-03-18 07:09:52.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.074 -07 000000590 INF: FPGA: Recv ZSGSRD 35594
17-03-18 07:09:52.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.084 -07 000000447 INF: FPGA: Recv ZSGSRD 35595
17-03-18 07:09:52.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.094 -07 000000611 INF: FPGA: Recv ZSGSRD 35598
17-03-18 07:09:52.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.104 -07 000000579 INF: FPGA: Recv ZSGSRD 35595
17-03-18 07:09:52.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.114 -07 000000512 INF: FPGA: Recv ZSGSRD 35592
17-03-18 07:09:52.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.124 -07 000000611 INF: FPGA: Recv ZSGSRD 35599
17-03-18 07:09:52.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:52.134 -07 000000541 INF: FPGA: Recv ZPIEZORD 31401
17-03-18 07:09:52.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.144 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.2 V.
17-03-18 07:09:52.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35593 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35594 (-168.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35584 (-168.1 uncal um), Max = 35599 (-168.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 07:09:52.144 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35593, posNoise = 6, negNoise = 9
17-03-18 07:09:52.144 -07 000000610 INF: Z Motor: After move to -0.168968, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:52.144 -07 000000610 INF: Z Motor: Settle wait time = 1456 ms, measure time = 106 ms (allowed 150 ms), total time = 1562 ms
17-03-18 07:09:52.144 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 07:09:52.194 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 07:09:52.194 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:09:52.194 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20361328125, Z-position -0.168980334772833. ----------
17-03-18 07:09:52.194 -07 000000610 INF: Cycle	158	Tile	11	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:09:52.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36735, sync = True, waitForSettling = True)
17-03-18 07:09:52.194 -07 000000610 INF: Z Motor: Moving to -0.168162 mm, started at -0.168980 mm, distance = 0.82 um
17-03-18 07:09:52.194 -07 000000610 INF: FPGA: Xmit ZDACW 36735\n [Z Motor]
17-03-18 07:09:52.194 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:09:52.204 -07 000000610 INF: FPGA: 'ZDACW 36735' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:09:52.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:52.204 -07 000000487 INF: FPGA: Recv ZDACR 36735
17-03-18 07:09:52.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:09:52.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.364 -07 000000012 INF: FPGA: Recv ZSGSRD 35462
17-03-18 07:09:52.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:52.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.374 -07 000000608 INF: FPGA: Recv ZSGSRD 35463
17-03-18 07:09:52.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.384 -07 000000480 INF: FPGA: Recv ZSGSRD 35469
17-03-18 07:09:52.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.394 -07 000000487 INF: FPGA: Recv ZSGSRD 35470
17-03-18 07:09:52.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.404 -07 000000447 INF: FPGA: Recv ZSGSRD 35470
17-03-18 07:09:52.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.414 -07 000000608 INF: FPGA: Recv ZSGSRD 35465
17-03-18 07:09:52.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.424 -07 000000474 INF: FPGA: Recv ZSGSRD 35469
17-03-18 07:09:52.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.434 -07 000000611 INF: FPGA: Recv ZSGSRD 35470
17-03-18 07:09:52.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.444 -07 000000590 INF: FPGA: Recv ZSGSRD 35467
17-03-18 07:09:52.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:52.454 -07 000000444 INF: FPGA: Recv ZSGSRD 35464
17-03-18 07:09:52.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:52.464 -07 000000501 INF: FPGA: Recv ZPIEZORD 31233
17-03-18 07:09:52.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:52.474 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.605 V. Piezo Error = -9.3 V.
17-03-18 07:09:52.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35467 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35468 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35462 (-167.3 uncal um), Max = 35470 (-167.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:09:52.474 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35467, posNoise = 3, negNoise = 5
17-03-18 07:09:52.474 -07 000000610 INF: Z Motor: After move to -0.168162, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:52.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 07:09:52.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:52.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:52.474 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:52.474 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:52.474 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:09:52.474 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:52.474 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:09:52.474 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:09:52.474 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:09:52.474 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:09:52.474 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:09:52.474 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:09:52.484 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:09:52.484 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:09:52.484 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:09:52.484 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:09:52.494 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:09:52.494 -07 000000611 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:09:52.494 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:09:52.494 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:09:52.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36911 150\n [Camera]
17-03-18 07:09:52.694 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:09:53.174 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:09:53.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:09:53.174 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:53.174 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:09:53.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:09:53.184 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:53.184 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:53.184 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 07:09:53.184 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:53.184 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 07:09:53.374 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36911 862
17-03-18 07:09:53.514 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:09:53.554 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 07:09:53.554 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 07:09:53.554 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:53.554 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 07:09:53.554 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 07:09:53.554 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:53.564 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:09:53.564 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:09:53.564 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 07:09:53.574 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 07:09:53.744 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:09:53.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:09:53.744 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:53.744 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:53.744 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 07:09:53.754 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:09:53.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:09:53.754 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:53.754 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:53.754 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 07:09:53.934 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:09:53.934 -07 000000447 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:09:53.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36911 150' command took 2 ms to send, 1429 ms to get response, and 1439 ms overall
17-03-18 07:09:53.944 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.168814
17-03-18 07:09:53.944 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16881 mm
17-03-18 07:09:53.944 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:09:53.944 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 07:09:53.944 -07 000000480 INF: Y Motor: Moving to 69.0426 mm, started at 68.2036 mm, delta = 0.8390 mm
17-03-18 07:09:53.944 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:53.944 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 36877, sync = True, waitForSettling = False)
17-03-18 07:09:53.944 -07 000000437 INF: Z Motor: Moving to -0.168812 mm, started at -0.168171 mm, distance = -0.64 um
17-03-18 07:09:53.944 -07 000000487 INF: FPGA: Recv YRDPOS 139682
17-03-18 07:09:53.954 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:09:53.954 -07 000000480 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:53.954 -07 000000437 INF: FPGA: Xmit ZDACW 36877\n [Z Motor]
17-03-18 07:09:53.954 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 07:09:53.954 -07 000000480 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:09:53.954 -07 000000480 INF: Y Motor: Moving 1342 steps-18
17-03-18 07:09:53.964 -07 000000437 INF: FPGA: 'ZDACW 36877' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 07:09:53.964 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:53.964 -07 000000541 INF: FPGA: Recv ZDACR 36877
17-03-18 07:09:53.974 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:09:53.974 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:53.974 -07 000000437 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 07:09:54.044 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.005817,
17-03-18 07:09:54.124 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 07:09:54.124 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:09:54.124 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:54.134 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:09:54.134 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 07:09:54.134 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:54.134 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:54.134 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:09:54.134 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:54.144 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 07:09:54.344 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 07:09:54.344 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 07:09:54.404 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:54.404 -07 000000611 INF: FPGA: Recv YRDPOS 141365
17-03-18 07:09:54.414 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:09:54.414 -07 000000480 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:54.414 -07 000000480 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 07:09:54.414 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-18 07:09:55.364 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:55.364 -07 000000455 INF: FPGA: Recv YRDPOS 141365
17-03-18 07:09:55.374 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:55.374 -07 000000480 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:55.404 -07 000000480 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:09:55.404 -07 000000480 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:09:55.404 -07 000000480 INF: Y Motor: Moved to 69.0259 after 1458 ms (table move)
17-03-18 07:09:55.404 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168812 mm (DAC = 36877)
17-03-18 07:09:55.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.404 -07 000000447 INF: FPGA: Recv ZSGSRD 35565
17-03-18 07:09:55.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:09:55.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.414 -07 000000444 INF: FPGA: Recv ZSGSRD 35562
17-03-18 07:09:55.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.424 -07 000000501 INF: FPGA: Recv ZSGSRD 35572
17-03-18 07:09:55.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.434 -07 000000480 INF: FPGA: Recv ZSGSRD 35564
17-03-18 07:09:55.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.444 -07 000000579 INF: FPGA: Recv ZSGSRD 35564
17-03-18 07:09:55.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.454 -07 000000444 INF: FPGA: Recv ZSGSRD 35570
17-03-18 07:09:55.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.464 -07 000000501 INF: FPGA: Recv ZSGSRD 35574
17-03-18 07:09:55.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.474 -07 000000455 INF: FPGA: Recv ZSGSRD 35570
17-03-18 07:09:55.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.484 -07 000000474 INF: FPGA: Recv ZSGSRD 35565
17-03-18 07:09:55.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.494 -07 000000590 INF: FPGA: Recv ZSGSRD 35569
17-03-18 07:09:55.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:55.504 -07 000000608 INF: FPGA: Recv ZPIEZORD 31399
17-03-18 07:09:55.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.514 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.2 V.
17-03-18 07:09:55.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35568 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35567 (-167.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35562 (-167.9 uncal um), Max = 35574 (-168.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:09:55.514 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35568, posNoise = 6, negNoise = 6
17-03-18 07:09:55.514 -07 000000610 INF: Z Motor: After move to -0.168812, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:55.514 -07 000000610 INF: Z Motor: Settle wait time = 1460 ms, measure time = 104 ms (allowed 150 ms), total time = 1564 ms
17-03-18 07:09:55.514 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 07:09:55.564 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 07:09:55.564 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:09:55.564 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.168819729469289. ----------
17-03-18 07:09:55.564 -07 000000610 INF: Cycle	158	Tile	12	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:09:55.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36701, sync = True, waitForSettling = True)
17-03-18 07:09:55.564 -07 000000610 INF: Z Motor: Moving to -0.168006 mm, started at -0.168820 mm, distance = 0.81 um
17-03-18 07:09:55.564 -07 000000610 INF: FPGA: Xmit ZDACW 36701\n [Z Motor]
17-03-18 07:09:55.564 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 07:09:55.574 -07 000000610 INF: FPGA: 'ZDACW 36701' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:09:55.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:55.574 -07 000000611 INF: FPGA: Recv ZDACR 36701
17-03-18 07:09:55.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:09:55.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.734 -07 000000480 INF: FPGA: Recv ZSGSRD 35441
17-03-18 07:09:55.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:55.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.744 -07 000000590 INF: FPGA: Recv ZSGSRD 35443
17-03-18 07:09:55.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.754 -07 000000455 INF: FPGA: Recv ZSGSRD 35441
17-03-18 07:09:55.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.764 -07 000000579 INF: FPGA: Recv ZSGSRD 35441
17-03-18 07:09:55.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.774 -07 000000512 INF: FPGA: Recv ZSGSRD 35447
17-03-18 07:09:55.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.784 -07 000000474 INF: FPGA: Recv ZSGSRD 35439
17-03-18 07:09:55.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.794 -07 000000437 INF: FPGA: Recv ZSGSRD 35447
17-03-18 07:09:55.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.804 -07 000000611 INF: FPGA: Recv ZSGSRD 35441
17-03-18 07:09:55.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.814 -07 000000608 INF: FPGA: Recv ZSGSRD 35440
17-03-18 07:09:55.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:55.824 -07 000000512 INF: FPGA: Recv ZSGSRD 35437
17-03-18 07:09:55.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:55.834 -07 000000012 INF: FPGA: Recv ZPIEZORD 31218
17-03-18 07:09:55.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:55.844 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.3 V.
17-03-18 07:09:55.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35442 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35441 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35437 (-167.1 uncal um), Max = 35447 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:09:55.844 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35442, posNoise = 5, negNoise = 5
17-03-18 07:09:55.844 -07 000000610 INF: Z Motor: After move to -0.168006, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:55.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:09:55.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:55.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:55.844 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:55.844 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:55.844 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:09:55.844 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:55.844 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:09:55.844 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:09:55.844 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:09:55.844 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:09:55.844 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:09:55.844 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:09:55.854 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:09:55.854 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:09:55.854 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:09:55.854 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:09:55.864 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 07:09:55.864 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 07:09:55.864 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 07:09:55.864 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 07:09:55.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36877 150\n [Camera]
17-03-18 07:09:56.074 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 07:09:56.544 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:09:56.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:09:56.544 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:56.544 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:56.544 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 07:09:56.544 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:09:56.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:09:56.544 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:56.544 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:56.544 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 07:09:56.734 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36877 861
17-03-18 07:09:56.884 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:09:56.924 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 07:09:56.924 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 07:09:56.924 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:56.924 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 07:09:56.924 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 07:09:56.924 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:56.924 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:09:56.924 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:09:56.924 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:09:56.924 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:09:56.924 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:09:56.934 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 07:09:57.114 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:09:57.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:09:57.114 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:09:57.114 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:09:57.114 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 07:09:57.114 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:09:57.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:09:57.114 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:09:57.114 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:09:57.114 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 07:09:57.304 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-18 07:09:57.304 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:09:57.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36877 150' command took 2 ms to send, 1427 ms to get response, and 1439 ms overall
17-03-18 07:09:57.304 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 07:09:57.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.168010278739427. ------
17-03-18 07:09:57.314 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:09:57.314 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17423 mm
17-03-18 07:09:57.314 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:09:57.314 -07 000000447 INF: Z Motor: Entering MoveAbsStepped (DAC = 38060, sync = True, waitForSettling = False)
17-03-18 07:09:57.314 -07 000000447 INF: Z Motor: Moving to -0.174228 mm, started at -0.168010 mm, distance = -6.22 um
17-03-18 07:09:57.314 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 07:09:57.314 -07 000000474 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 07:09:57.324 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:09:57.324 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:09:57.324 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:09:57.334 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:57.334 -07 000000590 INF: FPGA: Recv YRDPOS 141365
17-03-18 07:09:57.344 -07 000000447 INF: FPGA: Xmit ZDACW 38060\n [Z Motor]
17-03-18 07:09:57.344 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 07:09:57.344 -07 000000474 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:57.344 -07 000000474 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:09:57.344 -07 000000474 INF: Y Motor: Moving 1355 steps-34
17-03-18 07:09:57.344 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 07:09:57.354 -07 000000447 INF: FPGA: 'ZDACW 38060' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 07:09:57.354 -07 000000447 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:57.354 -07 000000512 INF: FPGA: Recv ZDACR 38060
17-03-18 07:09:57.364 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:09:57.364 -07 000000447 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:57.364 -07 000000447 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 07:09:57.504 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 07:09:57.504 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 07:09:57.514 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:57.514 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 07:09:57.514 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 07:09:57.514 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:57.514 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:57.514 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 07:09:57.514 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:09:57.524 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 07:09:57.524 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:09:57.524 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 07:09:57.734 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-18 07:09:57.734 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:09:57.794 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:57.794 -07 000000501 INF: FPGA: Recv YRDPOS 143077
17-03-18 07:09:57.804 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:09:57.804 -07 000000474 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:57.804 -07 000000474 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 07:09:57.804 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-18 07:09:58.754 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:09:58.754 -07 000000608 INF: FPGA: Recv YRDPOS 143078
17-03-18 07:09:58.764 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:58.764 -07 000000474 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:09:58.794 -07 000000474 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:09:58.794 -07 000000474 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:09:58.794 -07 000000474 INF: Y Motor: Moved to 69.8623 after 1476 ms (table move)
17-03-18 07:09:58.794 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174228 mm (DAC = 38060)
17-03-18 07:09:58.794 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:58.804 -07 000000611 INF: FPGA: Recv ZSGSRD 36415
17-03-18 07:09:58.804 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 07:09:58.804 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:58.804 -07 000000012 INF: FPGA: Recv ZSGSRD 36419
17-03-18 07:09:58.814 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:09:58.814 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:58.814 -07 000000447 INF: FPGA: Recv ZSGSRD 36408
17-03-18 07:09:58.824 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:58.824 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:58.824 -07 000000487 INF: FPGA: Recv ZSGSRD 36409
17-03-18 07:09:58.834 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:58.834 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:58.834 -07 000000501 INF: FPGA: Recv ZSGSRD 36404
17-03-18 07:09:58.844 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:58.844 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:58.844 -07 000000012 INF: FPGA: Recv ZSGSRD 36409
17-03-18 07:09:58.854 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:09:58.854 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:58.854 -07 000000437 INF: FPGA: Recv ZSGSRD 36413
17-03-18 07:09:58.864 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:58.864 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:58.864 -07 000000455 INF: FPGA: Recv ZSGSRD 36415
17-03-18 07:09:58.874 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:58.874 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:58.874 -07 000000501 INF: FPGA: Recv ZSGSRD 36412
17-03-18 07:09:58.884 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:58.884 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:09:58.884 -07 000000012 INF: FPGA: Recv ZSGSRD 36411
17-03-18 07:09:58.894 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:58.894 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:09:58.894 -07 000000437 INF: FPGA: Recv ZPIEZORD 32530
17-03-18 07:09:58.904 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:58.904 -07 000000579 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.808 V. Piezo Error = -8.6 V.
17-03-18 07:09:58.904 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36412 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36412 (-173.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36404 (-173.3 uncal um), Max = 36419 (-173.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:09:58.904 -07 000000579 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36412, posNoise = 7, negNoise = 8
17-03-18 07:09:58.904 -07 000000579 INF: Z Motor: After move to -0.174228, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:09:58.904 -07 000000579 INF: Z Motor: Settle wait time = 1480 ms, measure time = 101 ms (allowed 150 ms), total time = 1581 ms
17-03-18 07:09:58.904 -07 000000579 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 07:09:58.954 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-18 07:09:58.954 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:09:58.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:09:58.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:09:58.954 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:09:58.954 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:09:58.954 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:09:58.954 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:09:58.954 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:09:58.954 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:09:58.964 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:09:58.964 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:09:58.974 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 07:09:58.974 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 07:09:58.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:09:59.014 -07 000000611 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:09:59.314 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:09:59.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:09:59.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:09:59.454 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:09:59.454 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 07:09:59.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 475 ms to get response, and 480 ms overall
17-03-18 07:09:59.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) start.
17-03-18 07:09:59.464 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.008536,
17-03-18 07:09:59.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 07:09:59.574 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:09:59.574 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:09:59.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 251 ms.
17-03-18 07:09:59.654 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:09:59.654 -07 000000474 INF: Autofocus start
17-03-18 07:09:59.654 -07 000000474 INF: MeasureProfile start
17-03-18 07:09:59.654 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:09:59.664 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:09:59.664 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:09:59.664 -07 000000474 INF: MeasureProfile done
17-03-18 07:09:59.664 -07 000000474 INF: X=64  Z correction [um]=0.2557664
17-03-18 07:09:59.664 -07 000000474 INF: Autofocus finished
17-03-18 07:09:59.864 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:09:59.864 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:09:59.864 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.174241764516935. ----------
17-03-18 07:09:59.864 -07 000000610 INF: Cycle	158	Tile	13	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:09:59.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36629, sync = True, waitForSettling = True)
17-03-18 07:09:59.874 -07 000000610 INF: Z Motor: Moving to -0.167677 mm, started at -0.174242 mm, distance = 6.56 um
17-03-18 07:09:59.874 -07 000000610 INF: FPGA: Xmit ZDACW 36629\n [Z Motor]
17-03-18 07:09:59.874 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:09:59.884 -07 000000610 INF: FPGA: 'ZDACW 36629' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:59.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:09:59.884 -07 000000541 INF: FPGA: Recv ZDACR 36629
17-03-18 07:09:59.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:09:59.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:00.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:00.044 -07 000000579 INF: FPGA: Recv ZSGSRD 35397
17-03-18 07:10:00.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:00.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:00.054 -07 000000474 INF: FPGA: Recv ZSGSRD 35388
17-03-18 07:10:00.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:00.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:00.064 -07 000000444 INF: FPGA: Recv ZSGSRD 35390
17-03-18 07:10:00.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:00.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:00.074 -07 000000501 INF: FPGA: Recv ZSGSRD 35391
17-03-18 07:10:00.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:00.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:00.084 -07 000000480 INF: FPGA: Recv ZSGSRD 35390
17-03-18 07:10:00.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:00.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:00.094 -07 000000590 INF: FPGA: Recv ZSGSRD 35396
17-03-18 07:10:00.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:00.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:00.104 -07 000000474 INF: FPGA: Recv ZSGSRD 35390
17-03-18 07:10:00.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:00.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:00.114 -07 000000447 INF: FPGA: Recv ZSGSRD 35391
17-03-18 07:10:00.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:00.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:00.124 -07 000000512 INF: FPGA: Recv ZSGSRD 35386
17-03-18 07:10:00.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:00.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:00.134 -07 000000611 INF: FPGA: Recv ZSGSRD 35392
17-03-18 07:10:00.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:00.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:00.144 -07 000000012 INF: FPGA: Recv ZPIEZORD 31143
17-03-18 07:10:00.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:00.154 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.589 V. Piezo Error = -9.4 V.
17-03-18 07:10:00.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35391 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35390 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35386 (-166.8 uncal um), Max = 35397 (-166.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:10:00.154 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35391, posNoise = 6, negNoise = 5
17-03-18 07:10:00.154 -07 000000610 INF: Z Motor: After move to -0.167677, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:00.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 07:10:00.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:00.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:00.154 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:00.154 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:00.154 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:00.154 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:00.154 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:00.154 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:00.154 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 07:10:00.154 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:00.154 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:00.154 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:00.164 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:10:00.164 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:00.164 -07 000000487 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:10:00.164 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:00.164 -07 000000487 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 07:10:00.164 -07 000000487 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:10:00.174 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 07:10:00.174 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 07:10:00.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36805 150\n [Camera]
17-03-18 07:10:00.374 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:00.854 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:00.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:00.854 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:00.854 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:00.854 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 07:10:00.854 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:00.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:00.854 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:00.854 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:00.854 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 07:10:01.044 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36805 861
17-03-18 07:10:01.194 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:10:01.234 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:10:01.234 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:10:01.234 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:01.234 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 07:10:01.234 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 07:10:01.234 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:01.234 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:01.234 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:10:01.234 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:01.244 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 07:10:01.424 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:01.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:01.424 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:01.424 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:01.424 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 07:10:01.424 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:01.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:01.424 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:01.424 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:01.424 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 07:10:01.614 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:10:01.614 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:01.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36805 150' command took 2 ms to send, 1433 ms to get response, and 1440 ms overall
17-03-18 07:10:01.734 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168017
17-03-18 07:10:01.734 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16802 mm
17-03-18 07:10:01.734 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:01.734 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 36703, sync = True, waitForSettling = False)
17-03-18 07:10:01.734 -07 000000437 INF: Z Motor: Moving to -0.168016 mm, started at -0.167683 mm, distance = -0.33 um
17-03-18 07:10:01.734 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 07:10:01.734 -07 000000590 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 07:10:01.734 -07 000000437 INF: FPGA: Xmit ZDACW 36703\n [Z Motor]
17-03-18 07:10:01.744 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:10:01.744 -07 000000437 INF: FPGA: 'ZDACW 36703' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:10:01.744 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:01.744 -07 000000455 INF: FPGA: Recv ZDACR 36703
17-03-18 07:10:01.754 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:01.754 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:01.754 -07 000000437 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-18 07:10:01.754 -07 000000541 INF: FPGA: Recv YRDPOS 143078
17-03-18 07:10:01.764 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 07:10:01.764 -07 000000590 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:01.764 -07 000000590 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:01.764 -07 000000590 INF: Y Motor: Moving 1344 steps-22
17-03-18 07:10:01.764 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:01.814 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 07:10:01.814 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 07:10:01.814 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:01.814 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 07:10:01.814 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:10:01.814 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:01.814 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:01.814 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:01.814 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 07:10:01.824 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 07:10:01.924 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:10:01.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:10:02.134 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 07:10:02.134 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 07:10:02.194 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:02.194 -07 000000487 INF: FPGA: Recv YRDPOS 144767
17-03-18 07:10:02.204 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:10:02.204 -07 000000590 INF: Y Motor: Encoder = 144767 = motor step 113099.2 = 70.6870 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:02.204 -07 000000590 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 07:10:02.204 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.223 mm/sec
17-03-18 07:10:03.154 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:03.154 -07 000000541 INF: FPGA: Recv YRDPOS 144768
17-03-18 07:10:03.164 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:03.164 -07 000000590 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:03.194 -07 000000590 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:03.194 -07 000000590 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:10:03.194 -07 000000590 INF: Y Motor: Moved to 70.6875 after 1458 ms (table move)
17-03-18 07:10:03.194 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168016 mm (DAC = 36703)
17-03-18 07:10:03.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.204 -07 000000579 INF: FPGA: Recv ZSGSRD 35444
17-03-18 07:10:03.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:10:03.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.204 -07 000000541 INF: FPGA: Recv ZSGSRD 35450
17-03-18 07:10:03.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:10:03.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.214 -07 000000501 INF: FPGA: Recv ZSGSRD 35437
17-03-18 07:10:03.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.224 -07 000000590 INF: FPGA: Recv ZSGSRD 35440
17-03-18 07:10:03.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.234 -07 000000444 INF: FPGA: Recv ZSGSRD 35445
17-03-18 07:10:03.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.244 -07 000000480 INF: FPGA: Recv ZSGSRD 35452
17-03-18 07:10:03.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.254 -07 000000512 INF: FPGA: Recv ZSGSRD 35450
17-03-18 07:10:03.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.264 -07 000000541 INF: FPGA: Recv ZSGSRD 35444
17-03-18 07:10:03.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.274 -07 000000474 INF: FPGA: Recv ZSGSRD 35445
17-03-18 07:10:03.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.284 -07 000000608 INF: FPGA: Recv ZSGSRD 35440
17-03-18 07:10:03.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:03.294 -07 000000512 INF: FPGA: Recv ZPIEZORD 31265
17-03-18 07:10:03.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.304 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.2 V.
17-03-18 07:10:03.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35445 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35444 (-167.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35437 (-167.1 uncal um), Max = 35452 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:10:03.304 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35445, posNoise = 7, negNoise = 8
17-03-18 07:10:03.304 -07 000000610 INF: Z Motor: After move to -0.168016, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:03.304 -07 000000610 INF: Z Motor: Settle wait time = 1461 ms, measure time = 102 ms (allowed 150 ms), total time = 1563 ms
17-03-18 07:10:03.304 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:03.354 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 07:10:03.354 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:03.354 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.168029551375852. ----------
17-03-18 07:10:03.354 -07 000000610 INF: Cycle	158	Tile	14	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:03.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36527, sync = True, waitForSettling = True)
17-03-18 07:10:03.354 -07 000000610 INF: Z Motor: Moving to -0.167210 mm, started at -0.168030 mm, distance = 0.82 um
17-03-18 07:10:03.354 -07 000000610 INF: FPGA: Xmit ZDACW 36527\n [Z Motor]
17-03-18 07:10:03.354 -07 000000447 INF: FPGA: Recv ZDACW
17-03-18 07:10:03.364 -07 000000610 INF: FPGA: 'ZDACW 36527' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:10:03.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:03.364 -07 000000590 INF: FPGA: Recv ZDACR 36527
17-03-18 07:10:03.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:03.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.524 -07 000000579 INF: FPGA: Recv ZSGSRD 35320
17-03-18 07:10:03.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:03.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.534 -07 000000437 INF: FPGA: Recv ZSGSRD 35318
17-03-18 07:10:03.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.544 -07 000000447 INF: FPGA: Recv ZSGSRD 35317
17-03-18 07:10:03.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.554 -07 000000512 INF: FPGA: Recv ZSGSRD 35322
17-03-18 07:10:03.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.564 -07 000000579 INF: FPGA: Recv ZSGSRD 35322
17-03-18 07:10:03.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.574 -07 000000480 INF: FPGA: Recv ZSGSRD 35320
17-03-18 07:10:03.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.584 -07 000000608 INF: FPGA: Recv ZSGSRD 35321
17-03-18 07:10:03.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.594 -07 000000512 INF: FPGA: Recv ZSGSRD 35321
17-03-18 07:10:03.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.604 -07 000000455 INF: FPGA: Recv ZSGSRD 35316
17-03-18 07:10:03.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:03.614 -07 000000480 INF: FPGA: Recv ZSGSRD 35317
17-03-18 07:10:03.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:03.624 -07 000000012 INF: FPGA: Recv ZPIEZORD 31070
17-03-18 07:10:03.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:03.634 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -9.4 V.
17-03-18 07:10:03.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35319 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35320 (-166.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35316 (-166.3 uncal um), Max = 35322 (-166.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 07:10:03.634 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35319, posNoise = 3, negNoise = 3
17-03-18 07:10:03.634 -07 000000610 INF: Z Motor: After move to -0.167210, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:03.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:10:03.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:03.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:03.634 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:03.634 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:03.634 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:03.634 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:03.634 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:03.634 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:03.634 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:10:03.634 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:03.634 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:10:03.634 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:03.644 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:10:03.644 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:03.644 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 07:10:03.644 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:03.654 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:10:03.654 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:10:03.654 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 07:10:03.654 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:10:03.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36703 150\n [Camera]
17-03-18 07:10:03.854 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:04.334 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 671
17-03-18 07:10:04.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 671
17-03-18 07:10:04.334 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:04.334 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:04.334 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 07:10:04.334 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 671
17-03-18 07:10:04.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 671
17-03-18 07:10:04.334 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:04.334 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:04.334 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) start.
17-03-18 07:10:04.524 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36703 861
17-03-18 07:10:04.674 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1012
17-03-18 07:10:04.724 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1147047128, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 07:10:04.724 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 07:10:04.724 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:04.724 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 07:10:04.724 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 07:10:04.724 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:04.724 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:04.724 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:04.724 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 07:10:04.734 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 07:10:04.824 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.03576,
17-03-18 07:10:04.904 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:04.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:04.904 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:04.904 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:04.904 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 07:10:04.904 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:04.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:04.904 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:04.904 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:04.904 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 07:10:05.094 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:10:05.094 -07 000000437 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:05.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36703 150' command took 2 ms to send, 1432 ms to get response, and 1440 ms overall
17-03-18 07:10:05.094 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.168063
17-03-18 07:10:05.094 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16806 mm
17-03-18 07:10:05.094 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:05.094 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 07:10:05.094 -07 000000541 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 07:10:05.094 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:05.094 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 36713, sync = True, waitForSettling = False)
17-03-18 07:10:05.094 -07 000000501 INF: Z Motor: Moving to -0.168061 mm, started at -0.167220 mm, distance = -0.84 um
17-03-18 07:10:05.094 -07 000000474 INF: FPGA: Recv YRDPOS 144768
17-03-18 07:10:05.104 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:10:05.104 -07 000000541 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:05.104 -07 000000541 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:05.104 -07 000000541 INF: Y Motor: Moving 1352 steps-32
17-03-18 07:10:05.104 -07 000000501 INF: FPGA: Xmit ZDACW 36713\n [Z Motor]
17-03-18 07:10:05.104 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 07:10:05.114 -07 000000501 INF: FPGA: 'ZDACW 36713' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 07:10:05.114 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:05.114 -07 000000611 INF: FPGA: Recv ZDACR 36713
17-03-18 07:10:05.124 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:05.124 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:05.124 -07 000000501 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 07:10:05.284 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 07:10:05.284 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 07:10:05.284 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:05.294 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:05.294 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 07:10:05.294 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 07:10:05.294 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:05.294 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 07:10:05.294 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:05.294 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 07:10:05.494 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 07:10:05.494 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:10:05.554 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:05.554 -07 000000480 INF: FPGA: Recv YRDPOS 146468
17-03-18 07:10:05.564 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:10:05.564 -07 000000541 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:05.564 -07 000000541 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 07:10:05.564 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-18 07:10:06.514 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:06.514 -07 000000444 INF: FPGA: Recv YRDPOS 146468
17-03-18 07:10:06.524 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:06.524 -07 000000541 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:06.554 -07 000000541 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:06.554 -07 000000541 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:10:06.554 -07 000000541 INF: Y Motor: Moved to 71.5176 after 1457 ms (table move)
17-03-18 07:10:06.554 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168061 mm (DAC = 36713)
17-03-18 07:10:06.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.564 -07 000000444 INF: FPGA: Recv ZSGSRD 35446
17-03-18 07:10:06.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:10:06.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.564 -07 000000512 INF: FPGA: Recv ZSGSRD 35455
17-03-18 07:10:06.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.574 -07 000000447 INF: FPGA: Recv ZSGSRD 35454
17-03-18 07:10:06.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.584 -07 000000541 INF: FPGA: Recv ZSGSRD 35451
17-03-18 07:10:06.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.594 -07 000000480 INF: FPGA: Recv ZSGSRD 35447
17-03-18 07:10:06.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.604 -07 000000608 INF: FPGA: Recv ZSGSRD 35447
17-03-18 07:10:06.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.614 -07 000000447 INF: FPGA: Recv ZSGSRD 35451
17-03-18 07:10:06.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.624 -07 000000541 INF: FPGA: Recv ZSGSRD 35453
17-03-18 07:10:06.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.634 -07 000000480 INF: FPGA: Recv ZSGSRD 35453
17-03-18 07:10:06.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.644 -07 000000608 INF: FPGA: Recv ZSGSRD 35453
17-03-18 07:10:06.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:06.654 -07 000000590 INF: FPGA: Recv ZPIEZORD 31270
17-03-18 07:10:06.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.664 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.2 V.
17-03-18 07:10:06.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35451 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35452 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35446 (-167.2 uncal um), Max = 35455 (-167.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:10:06.664 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35451, posNoise = 4, negNoise = 5
17-03-18 07:10:06.664 -07 000000610 INF: Z Motor: After move to -0.168061, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:06.664 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 103 ms (allowed 150 ms), total time = 1561 ms
17-03-18 07:10:06.664 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:06.714 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 07:10:06.714 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:06.714 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.168068096648703. ----------
17-03-18 07:10:06.714 -07 000000610 INF: Cycle	158	Tile	15	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:06.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36537, sync = True, waitForSettling = True)
17-03-18 07:10:06.714 -07 000000610 INF: Z Motor: Moving to -0.167256 mm, started at -0.168068 mm, distance = 0.81 um
17-03-18 07:10:06.714 -07 000000610 INF: FPGA: Xmit ZDACW 36537\n [Z Motor]
17-03-18 07:10:06.714 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 07:10:06.724 -07 000000610 INF: FPGA: 'ZDACW 36537' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:10:06.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:06.724 -07 000000012 INF: FPGA: Recv ZDACR 36537
17-03-18 07:10:06.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:06.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.884 -07 000000444 INF: FPGA: Recv ZSGSRD 35326
17-03-18 07:10:06.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:06.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.894 -07 000000608 INF: FPGA: Recv ZSGSRD 35327
17-03-18 07:10:06.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.904 -07 000000487 INF: FPGA: Recv ZSGSRD 35329
17-03-18 07:10:06.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.914 -07 000000541 INF: FPGA: Recv ZSGSRD 35327
17-03-18 07:10:06.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.924 -07 000000444 INF: FPGA: Recv ZSGSRD 35327
17-03-18 07:10:06.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.934 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:10:06.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:10:06.934 -07 000000455 INF: FPGA: Recv ZSGSRD 35329
17-03-18 07:10:06.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.944 -07 000000487 INF: FPGA: Recv ZSGSRD 35325
17-03-18 07:10:06.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.954 -07 000000012 INF: FPGA: Recv ZSGSRD 35325
17-03-18 07:10:06.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.964 -07 000000576 INF: FPGA: Recv ZSGSRD 35319
17-03-18 07:10:06.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:06.974 -07 000000480 INF: FPGA: Recv ZSGSRD 35328
17-03-18 07:10:06.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:06.984 -07 000000590 INF: FPGA: Recv ZPIEZORD 31092
17-03-18 07:10:06.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:06.994 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.575 V. Piezo Error = -9.3 V.
17-03-18 07:10:06.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35326 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35327 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35319 (-166.4 uncal um), Max = 35329 (-166.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:10:06.994 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35326, posNoise = 3, negNoise = 7
17-03-18 07:10:06.994 -07 000000610 INF: Z Motor: After move to -0.167256, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:06.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:10:06.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:06.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:06.994 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:06.994 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:06.994 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:06.994 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:06.994 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:06.994 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:06.994 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:06.994 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:06.994 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:10:06.994 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:07.004 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:10:07.004 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:07.004 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:10:07.004 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:07.014 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 07:10:07.014 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 07:10:07.014 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 07:10:07.014 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:10:07.024 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36713 150\n [Camera]
17-03-18 07:10:07.214 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:07.694 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:07.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:07.694 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:07.694 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:07.694 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 07:10:07.694 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:07.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:07.694 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:07.704 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:07.704 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 07:10:07.884 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36713 861
17-03-18 07:10:08.034 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:10:08.074 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:10:08.084 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 07:10:08.084 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:08.084 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 07:10:08.084 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:10:08.084 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:08.084 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:08.084 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:08.084 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 07:10:08.094 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 07:10:08.264 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:08.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:08.264 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:08.264 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:08.264 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 07:10:08.274 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:08.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:08.274 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:08.274 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:08.274 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 07:10:08.454 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:10:08.464 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:08.464 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36713 150' command took 2 ms to send, 1430 ms to get response, and 1440 ms overall
17-03-18 07:10:08.464 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167648
17-03-18 07:10:08.464 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16765 mm
17-03-18 07:10:08.464 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:08.464 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 07:10:08.464 -07 000000501 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-18 07:10:08.464 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:08.464 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 36623, sync = True, waitForSettling = False)
17-03-18 07:10:08.464 -07 000000611 INF: Z Motor: Moving to -0.167649 mm, started at -0.167265 mm, distance = -0.38 um
17-03-18 07:10:08.464 -07 000000541 INF: FPGA: Recv YRDPOS 146468
17-03-18 07:10:08.474 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:10:08.474 -07 000000501 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:08.474 -07 000000501 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:08.474 -07 000000501 INF: Y Motor: Moving 1352 steps-31
17-03-18 07:10:08.474 -07 000000611 INF: FPGA: Xmit ZDACW 36623\n [Z Motor]
17-03-18 07:10:08.474 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 07:10:08.484 -07 000000611 INF: FPGA: 'ZDACW 36623' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 07:10:08.484 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:08.484 -07 000000512 INF: FPGA: Recv ZDACR 36623
17-03-18 07:10:08.494 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:08.494 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:08.494 -07 000000611 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 07:10:08.654 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 07:10:08.654 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 07:10:08.654 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:08.654 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 07:10:08.654 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 07:10:08.654 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:08.654 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:08.654 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:10:08.654 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:08.664 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 07:10:08.874 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 07:10:08.874 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-18 07:10:08.924 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:08.934 -07 000000608 INF: FPGA: Recv YRDPOS 148169
17-03-18 07:10:08.934 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:10:08.934 -07 000000501 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:08.934 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 07:10:08.934 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.845 mm, average velocity = 2.107 mm/sec
17-03-18 07:10:09.884 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:09.884 -07 000000474 INF: FPGA: Recv YRDPOS 148169
17-03-18 07:10:09.894 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:09.894 -07 000000501 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:09.924 -07 000000501 INF: Y Motor: After move to 72.362610, error = -0.014465, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:09.924 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:10:09.924 -07 000000501 INF: Y Motor: Moved to 72.3481 after 1459 ms (table move)
17-03-18 07:10:09.924 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167649 mm (DAC = 36623)
17-03-18 07:10:09.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:09.934 -07 000000480 INF: FPGA: Recv ZSGSRD 35394
17-03-18 07:10:09.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:10:09.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:09.934 -07 000000541 INF: FPGA: Recv ZSGSRD 35387
17-03-18 07:10:09.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:10:09.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:09.944 -07 000000012 INF: FPGA: Recv ZSGSRD 35382
17-03-18 07:10:09.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:09.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:09.954 -07 000000444 INF: FPGA: Recv ZSGSRD 35386
17-03-18 07:10:09.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:09.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:09.964 -07 000000579 INF: FPGA: Recv ZSGSRD 35387
17-03-18 07:10:09.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:09.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:09.974 -07 000000541 INF: FPGA: Recv ZSGSRD 35397
17-03-18 07:10:09.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:09.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:09.984 -07 000000012 INF: FPGA: Recv ZSGSRD 35387
17-03-18 07:10:09.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:09.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:09.994 -07 000000447 INF: FPGA: Recv ZSGSRD 35392
17-03-18 07:10:10.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:10.004 -07 000000590 INF: FPGA: Recv ZSGSRD 35392
17-03-18 07:10:10.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:10.014 -07 000000576 INF: FPGA: Recv ZSGSRD 35383
17-03-18 07:10:10.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:10.024 -07 000000611 INF: FPGA: Recv ZPIEZORD 31181
17-03-18 07:10:10.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.034 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -9.3 V.
17-03-18 07:10:10.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35389 (-166.8 uncal um), Error = 0.8 uncal um, Median = 35387 (-166.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35382 (-166.8 uncal um), Max = 35397 (-166.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:10:10.034 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35389, posNoise = 8, negNoise = 7
17-03-18 07:10:10.034 -07 000000610 INF: Z Motor: After move to -0.167649, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:10.034 -07 000000610 INF: Z Motor: Settle wait time = 1460 ms, measure time = 105 ms (allowed 150 ms), total time = 1565 ms
17-03-18 07:10:10.034 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:10.084 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 07:10:10.084 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:10.084 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34814453125, Z-position -0.167669795495913. ----------
17-03-18 07:10:10.084 -07 000000610 INF: Cycle	158	Tile	16	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:10.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36446, sync = True, waitForSettling = True)
17-03-18 07:10:10.084 -07 000000610 INF: Z Motor: Moving to -0.166839 mm, started at -0.167670 mm, distance = 0.83 um
17-03-18 07:10:10.084 -07 000000610 INF: FPGA: Xmit ZDACW 36446\n [Z Motor]
17-03-18 07:10:10.084 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 07:10:10.094 -07 000000610 INF: FPGA: 'ZDACW 36446' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:10:10.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:10.094 -07 000000576 INF: FPGA: Recv ZDACR 36446
17-03-18 07:10:10.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:10.184 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.008536,
17-03-18 07:10:10.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:10.254 -07 000000437 INF: FPGA: Recv ZSGSRD 35259
17-03-18 07:10:10.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:10.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:10.264 -07 000000487 INF: FPGA: Recv ZSGSRD 35264
17-03-18 07:10:10.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:10.274 -07 000000579 INF: FPGA: Recv ZSGSRD 35258
17-03-18 07:10:10.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:10.284 -07 000000447 INF: FPGA: Recv ZSGSRD 35258
17-03-18 07:10:10.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:10.294 -07 000000608 INF: FPGA: Recv ZSGSRD 35261
17-03-18 07:10:10.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:10.304 -07 000000512 INF: FPGA: Recv ZSGSRD 35265
17-03-18 07:10:10.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:10.314 -07 000000611 INF: FPGA: Recv ZSGSRD 35263
17-03-18 07:10:10.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:10.324 -07 000000455 INF: FPGA: Recv ZSGSRD 35259
17-03-18 07:10:10.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:10.334 -07 000000012 INF: FPGA: Recv ZSGSRD 35263
17-03-18 07:10:10.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:10.344 -07 000000437 INF: FPGA: Recv ZSGSRD 35262
17-03-18 07:10:10.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:10.354 -07 000000474 INF: FPGA: Recv ZPIEZORD 31009
17-03-18 07:10:10.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:10.364 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -9.4 V.
17-03-18 07:10:10.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35261 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35262 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35258 (-166.0 uncal um), Max = 35265 (-166.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 07:10:10.364 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35261, posNoise = 4, negNoise = 3
17-03-18 07:10:10.364 -07 000000610 INF: Z Motor: After move to -0.166839, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:10.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:10:10.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:10.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:10.364 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:10.364 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:10.364 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:10.364 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:10.364 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:10.364 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:10.364 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:10.364 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:10.364 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:10:10.364 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:10.374 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:10:10.374 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:10.374 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:10:10.374 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:10.384 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:10:10.384 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:10:10.384 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-18 07:10:10.384 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 07:10:10.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36623 150\n [Camera]
17-03-18 07:10:10.594 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:11.064 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:11.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:11.064 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:11.064 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:11.064 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 07:10:11.074 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:11.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:11.074 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:11.074 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:11.074 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 07:10:11.254 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36623 861
17-03-18 07:10:11.404 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:10:11.444 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 07:10:11.444 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 07:10:11.444 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:11.444 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 07:10:11.444 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 07:10:11.444 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:11.444 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:11.454 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 07:10:11.454 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:11.454 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 07:10:11.634 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:11.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:11.634 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:11.634 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:11.634 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 07:10:11.644 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:11.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:11.644 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:11.644 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:11.644 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 07:10:11.834 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP 1435
17-03-18 07:10:11.834 -07 000000474 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:11.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36623 150' command took 2 ms to send, 1432 ms to get response, and 1442 ms overall
17-03-18 07:10:11.834 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 07:10:11.834 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34814453125, Z-Position -0.166847496341768. ------
17-03-18 07:10:11.834 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:10:11.834 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17320 mm
17-03-18 07:10:11.834 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:11.844 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:10:11.844 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:10:11.844 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37836, sync = True, waitForSettling = False)
17-03-18 07:10:11.844 -07 000000480 INF: Z Motor: Moving to -0.173202 mm, started at -0.166847 mm, distance = -6.35 um
17-03-18 07:10:11.844 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:10:11.844 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 07:10:11.844 -07 000000576 INF: Y Motor: Moving to 73.1926 mm, started at 72.3481 mm, delta = 0.8445 mm
17-03-18 07:10:11.854 -07 000000480 INF: FPGA: Xmit ZDACW 37836\n [Z Motor]
17-03-18 07:10:11.854 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:10:11.864 -07 000000480 INF: FPGA: 'ZDACW 37836' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 07:10:11.864 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:11.864 -07 000000608 INF: FPGA: Recv YRDPOS 148169
17-03-18 07:10:11.874 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 07:10:11.874 -07 000000576 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:11.874 -07 000000576 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:11.874 -07 000000576 INF: Y Motor: Moving 1351 steps-30
17-03-18 07:10:11.874 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:11.874 -07 000000541 INF: FPGA: Recv ZDACR 37836
17-03-18 07:10:11.884 -07 000000480 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:10:11.884 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:11.884 -07 000000480 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 07:10:11.934 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:10:11.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:10:12.024 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 07:10:12.024 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 07:10:12.024 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:12.024 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:10:12.024 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 07:10:12.024 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:12.024 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:12.024 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:10:12.024 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:12.034 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 07:10:12.044 -07 000000474 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:10:12.044 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 07:10:12.264 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-18 07:10:12.264 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 07:10:12.314 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:12.324 -07 000000447 INF: FPGA: Recv YRDPOS 149861
17-03-18 07:10:12.324 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:10:12.324 -07 000000576 INF: Y Motor: Encoder = 149861 = motor step 117078.9 = 73.1743 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:12.324 -07 000000576 INF: Y Motor: Position error before settling (table move) = -37 encoder counts (-0.018 mm)
17-03-18 07:10:12.324 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.844 mm, average velocity = 2.171 mm/sec
17-03-18 07:10:13.274 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:13.274 -07 000000501 INF: FPGA: Recv YRDPOS 149861
17-03-18 07:10:13.284 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:13.284 -07 000000576 INF: Y Motor: Encoder = 149861 = motor step 117078.9 = 73.1743 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:13.314 -07 000000576 INF: Y Motor: After move to 73.192604, error = -0.018288, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:13.314 -07 000000576 INF: Y Motor: Position error after settling (table move) = -37 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:10:13.314 -07 000000576 INF: Y Motor: Moved to 73.1743 after 1472 ms (table move)
17-03-18 07:10:13.314 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173202 mm (DAC = 37836)
17-03-18 07:10:13.314 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:13.324 -07 000000480 INF: FPGA: Recv ZSGSRD 36253
17-03-18 07:10:13.324 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:10:13.324 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:13.324 -07 000000579 INF: FPGA: Recv ZSGSRD 36263
17-03-18 07:10:13.334 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:10:13.334 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:13.334 -07 000000611 INF: FPGA: Recv ZSGSRD 36248
17-03-18 07:10:13.344 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:13.344 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:13.344 -07 000000487 INF: FPGA: Recv ZSGSRD 36244
17-03-18 07:10:13.354 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:13.354 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:13.354 -07 000000455 INF: FPGA: Recv ZSGSRD 36254
17-03-18 07:10:13.364 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:13.364 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:13.364 -07 000000501 INF: FPGA: Recv ZSGSRD 36257
17-03-18 07:10:13.374 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:13.374 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:13.374 -07 000000608 INF: FPGA: Recv ZSGSRD 36253
17-03-18 07:10:13.384 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:13.384 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:13.384 -07 000000611 INF: FPGA: Recv ZSGSRD 36252
17-03-18 07:10:13.394 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:13.394 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:13.394 -07 000000487 INF: FPGA: Recv ZSGSRD 36254
17-03-18 07:10:13.404 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:13.404 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:13.404 -07 000000480 INF: FPGA: Recv ZSGSRD 36260
17-03-18 07:10:13.414 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:13.414 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:13.414 -07 000000608 INF: FPGA: Recv ZPIEZORD 32332
17-03-18 07:10:13.424 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:13.424 -07 000000590 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.773 V. Piezo Error = -8.7 V.
17-03-18 07:10:13.424 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36254 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36254 (-172.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36244 (-172.3 uncal um), Max = 36263 (-172.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 07:10:13.424 -07 000000590 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36254, posNoise = 9, negNoise = 10
17-03-18 07:10:13.424 -07 000000590 INF: Z Motor: After move to -0.173202, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:13.424 -07 000000590 INF: Z Motor: Settle wait time = 1476 ms, measure time = 103 ms (allowed 150 ms), total time = 1579 ms
17-03-18 07:10:13.424 -07 000000590 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:13.474 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 07:10:13.474 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:13.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:13.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:13.474 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:13.474 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:13.474 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:10:13.474 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:13.474 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:10:13.474 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:10:13.484 -07 000000611 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:10:13.484 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:10:13.494 -07 000000611 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 07:10:13.494 -07 000000611 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 07:10:13.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:10:13.544 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:10:13.844 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:10:13.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:10:13.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:10:13.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 600903832, 0x0, 559484976) start.
17-03-18 07:10:13.884 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:10:13.884 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 07:10:13.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 387 ms overall
17-03-18 07:10:13.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 600903832, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 07:10:13.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:13.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:10:13.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 07:10:13.984 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:10:13.984 -07 000000474 INF: Autofocus start
17-03-18 07:10:13.984 -07 000000474 INF: MeasureProfile start
17-03-18 07:10:13.984 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:10:13.994 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:10:13.994 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:10:13.994 -07 000000474 INF: MeasureProfile done
17-03-18 07:10:13.994 -07 000000474 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 07:10:13.994 -07 000000474 INF: Autofocus finished
17-03-18 07:10:14.194 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:10:14.194 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:10:14.194 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17431640625, Z-position -0.173226738998537. ----------
17-03-18 07:10:14.194 -07 000000610 INF: Cycle	158	Tile	17	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:14.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36261, sync = True, waitForSettling = True)
17-03-18 07:10:14.204 -07 000000610 INF: Z Motor: Moving to -0.165992 mm, started at -0.173227 mm, distance = 7.23 um
17-03-18 07:10:14.204 -07 000000610 INF: FPGA: Xmit ZDACW 36261\n [Z Motor]
17-03-18 07:10:14.204 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 07:10:14.214 -07 000000610 INF: FPGA: 'ZDACW 36261' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:10:14.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:14.214 -07 000000608 INF: FPGA: Recv ZDACR 36261
17-03-18 07:10:14.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:14.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:14.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:14.374 -07 000000541 INF: FPGA: Recv ZSGSRD 35131
17-03-18 07:10:14.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:14.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:14.384 -07 000000447 INF: FPGA: Recv ZSGSRD 35128
17-03-18 07:10:14.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:14.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:14.394 -07 000000455 INF: FPGA: Recv ZSGSRD 35126
17-03-18 07:10:14.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:14.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:14.404 -07 000000590 INF: FPGA: Recv ZSGSRD 35129
17-03-18 07:10:14.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:14.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:14.414 -07 000000579 INF: FPGA: Recv ZSGSRD 35130
17-03-18 07:10:14.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:14.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:14.424 -07 000000444 INF: FPGA: Recv ZSGSRD 35129
17-03-18 07:10:14.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:14.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:14.434 -07 000000437 INF: FPGA: Recv ZSGSRD 35129
17-03-18 07:10:14.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:14.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:14.444 -07 000000590 INF: FPGA: Recv ZSGSRD 35132
17-03-18 07:10:14.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:14.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:14.454 -07 000000474 INF: FPGA: Recv ZSGSRD 35129
17-03-18 07:10:14.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:14.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:14.464 -07 000000012 INF: FPGA: Recv ZSGSRD 35127
17-03-18 07:10:14.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:14.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:14.474 -07 000000611 INF: FPGA: Recv ZPIEZORD 30830
17-03-18 07:10:14.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:14.484 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.533 V. Piezo Error = -9.5 V.
17-03-18 07:10:14.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35129 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35129 (-165.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35126 (-165.1 uncal um), Max = 35132 (-165.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 07:10:14.484 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35129, posNoise = 3, negNoise = 3
17-03-18 07:10:14.484 -07 000000610 INF: Z Motor: After move to -0.165992, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:14.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 07:10:14.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:14.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:14.484 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:14.484 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:14.484 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:14.484 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:14.484 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:14.484 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:14.484 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:14.484 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:14.484 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:10:14.484 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:14.494 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:10:14.494 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:14.494 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:10:14.494 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:14.504 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:10:14.504 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:10:14.504 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:10:14.504 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:10:14.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36438 150\n [Camera]
17-03-18 07:10:14.704 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:15.184 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:15.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:15.184 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:15.184 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:15.184 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 07:10:15.184 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:15.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:15.184 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:15.184 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:15.184 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 07:10:15.374 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36438 861
17-03-18 07:10:15.534 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:10:15.544 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.974486,
17-03-18 07:10:15.574 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 07:10:15.574 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 07:10:15.574 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:15.574 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 07:10:15.574 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 07:10:15.574 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:15.574 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:15.574 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 07:10:15.584 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:15.584 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 07:10:15.754 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:15.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:15.754 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:15.764 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:15.764 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 07:10:15.764 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:15.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:15.764 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:15.764 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:15.764 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 07:10:15.944 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:10:15.944 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:15.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36438 150' command took 2 ms to send, 1429 ms to get response, and 1440 ms overall
17-03-18 07:10:15.954 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.165938
17-03-18 07:10:15.954 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16594 mm
17-03-18 07:10:15.954 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:15.954 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 36249, sync = True, waitForSettling = False)
17-03-18 07:10:15.954 -07 000000501 INF: Z Motor: Moving to -0.165937 mm, started at -0.166000 mm, distance = 0.06 um
17-03-18 07:10:15.954 -07 000000501 INF: FPGA: Xmit ZDACW 36249\n [Z Motor]
17-03-18 07:10:15.954 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 07:10:15.954 -07 000000474 INF: Y Motor: Moving to 74.0226 mm, started at 73.1743 mm, delta = 0.8483 mm
17-03-18 07:10:15.954 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 07:10:15.964 -07 000000501 INF: FPGA: 'ZDACW 36249' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:10:15.964 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:15.964 -07 000000590 INF: FPGA: Recv YRDPOS 149862
17-03-18 07:10:15.974 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:15.974 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 07:10:15.974 -07 000000474 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:15.974 -07 000000437 INF: FPGA: Recv ZDACR 36249
17-03-18 07:10:15.974 -07 000000474 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:15.974 -07 000000474 INF: Y Motor: Moving 1356 steps-37
17-03-18 07:10:15.984 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:10:15.984 -07 000000501 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 07:10:15.984 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:16.144 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 07:10:16.144 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 07:10:16.144 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:16.144 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 07:10:16.144 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:10:16.144 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:16.144 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:16.154 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:16.154 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 07:10:16.154 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 07:10:16.354 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 07:10:16.354 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 07:10:16.404 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:16.404 -07 000000608 INF: FPGA: Recv YRDPOS 151566
17-03-18 07:10:16.414 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:10:16.414 -07 000000474 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:16.414 -07 000000474 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 07:10:16.414 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.848 mm, average velocity = 2.215 mm/sec
17-03-18 07:10:16.934 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:10:16.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:10:17.364 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:17.364 -07 000000611 INF: FPGA: Recv YRDPOS 151566
17-03-18 07:10:17.374 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:17.374 -07 000000474 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:17.394 -07 000000474 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:17.394 -07 000000474 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:10:17.394 -07 000000474 INF: Y Motor: Moved to 74.0068 after 1439 ms (table move)
17-03-18 07:10:17.394 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.165937 mm (DAC = 36249)
17-03-18 07:10:17.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.404 -07 000000447 INF: FPGA: Recv ZSGSRD 35121
17-03-18 07:10:17.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:10:17.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.404 -07 000000480 INF: FPGA: Recv ZSGSRD 35128
17-03-18 07:10:17.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:10:17.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.414 -07 000000012 INF: FPGA: Recv ZSGSRD 35123
17-03-18 07:10:17.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.424 -07 000000541 INF: FPGA: Recv ZSGSRD 35117
17-03-18 07:10:17.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.434 -07 000000590 INF: FPGA: Recv ZSGSRD 35118
17-03-18 07:10:17.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.444 -07 000000501 INF: FPGA: Recv ZSGSRD 35123
17-03-18 07:10:17.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.454 -07 000000579 INF: FPGA: Recv ZSGSRD 35120
17-03-18 07:10:17.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.464 -07 000000576 INF: FPGA: Recv ZSGSRD 35122
17-03-18 07:10:17.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.474 -07 000000512 INF: FPGA: Recv ZSGSRD 35124
17-03-18 07:10:17.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.484 -07 000000480 INF: FPGA: Recv ZSGSRD 35123
17-03-18 07:10:17.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:17.494 -07 000000579 INF: FPGA: Recv ZPIEZORD 30882
17-03-18 07:10:17.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.504 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.531 V. Piezo Error = -9.3 V.
17-03-18 07:10:17.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35122 (-165.1 uncal um), Error = 0.8 uncal um, Median = 35122 (-165.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35117 (-165.1 uncal um), Max = 35128 (-165.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:10:17.504 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35122, posNoise = 6, negNoise = 5
17-03-18 07:10:17.504 -07 000000610 INF: Z Motor: After move to -0.165937, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:17.504 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 102 ms (allowed 150 ms), total time = 1544 ms
17-03-18 07:10:17.504 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:17.554 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-18 07:10:17.554 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:17.554 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.165954530854063. ----------
17-03-18 07:10:17.554 -07 000000610 INF: Cycle	158	Tile	18	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:17.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36072, sync = True, waitForSettling = True)
17-03-18 07:10:17.554 -07 000000610 INF: Z Motor: Moving to -0.165127 mm, started at -0.165955 mm, distance = 0.83 um
17-03-18 07:10:17.554 -07 000000610 INF: FPGA: Xmit ZDACW 36072\n [Z Motor]
17-03-18 07:10:17.554 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 07:10:17.564 -07 000000610 INF: FPGA: 'ZDACW 36072' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:10:17.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:17.564 -07 000000512 INF: FPGA: Recv ZDACR 36072
17-03-18 07:10:17.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:17.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.724 -07 000000501 INF: FPGA: Recv ZSGSRD 34999
17-03-18 07:10:17.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:17.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.734 -07 000000611 INF: FPGA: Recv ZSGSRD 34997
17-03-18 07:10:17.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.744 -07 000000487 INF: FPGA: Recv ZSGSRD 34994
17-03-18 07:10:17.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.754 -07 000000608 INF: FPGA: Recv ZSGSRD 34990
17-03-18 07:10:17.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.764 -07 000000579 INF: FPGA: Recv ZSGSRD 34995
17-03-18 07:10:17.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.774 -07 000000541 INF: FPGA: Recv ZSGSRD 34996
17-03-18 07:10:17.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.784 -07 000000487 INF: FPGA: Recv ZSGSRD 34992
17-03-18 07:10:17.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.794 -07 000000512 INF: FPGA: Recv ZSGSRD 34994
17-03-18 07:10:17.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.804 -07 000000579 INF: FPGA: Recv ZSGSRD 34993
17-03-18 07:10:17.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:17.814 -07 000000611 INF: FPGA: Recv ZSGSRD 34997
17-03-18 07:10:17.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:17.824 -07 000000487 INF: FPGA: Recv ZPIEZORD 30720
17-03-18 07:10:17.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:17.834 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.504 V. Piezo Error = -9.4 V.
17-03-18 07:10:17.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.1 um, Read 10 ADC samples: Avg = 34995 (-164.3 uncal um), Error = 0.9 uncal um, Median = 34994 (-164.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34990 (-164.2 uncal um), Max = 34999 (-164.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:10:17.834 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34995, posNoise = 4, negNoise = 5
17-03-18 07:10:17.834 -07 000000610 INF: Z Motor: After move to -0.165127, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:17.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 07:10:17.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:17.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:17.834 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:17.834 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:17.834 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:17.834 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:17.834 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:17.834 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:17.834 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:17.834 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:17.834 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 07:10:17.834 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:17.834 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:10:17.834 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:17.844 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:10:17.844 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:17.844 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:10:17.844 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 07:10:17.854 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 07:10:17.854 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 07:10:17.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36249 150\n [Camera]
17-03-18 07:10:18.054 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:18.534 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:18.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:18.534 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:18.534 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:18.534 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 07:10:18.534 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:18.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:18.534 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:18.534 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:18.534 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 07:10:18.724 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36249 861
17-03-18 07:10:18.874 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1014
17-03-18 07:10:18.914 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 07:10:18.914 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:10:18.914 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:18.914 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 07:10:18.914 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 07:10:18.914 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:18.924 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:10:18.924 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 07:10:18.924 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 07:10:18.934 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 07:10:19.104 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:19.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:19.104 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:19.104 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:19.104 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 07:10:19.104 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:19.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:19.104 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:19.104 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:19.104 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 07:10:19.294 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-18 07:10:19.294 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:19.294 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36249 150' command took 2 ms to send, 1434 ms to get response, and 1439 ms overall
17-03-18 07:10:19.294 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.165384
17-03-18 07:10:19.294 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16538 mm
17-03-18 07:10:19.294 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:19.294 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 07:10:19.294 -07 000000576 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 07:10:19.294 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:19.294 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 36128, sync = True, waitForSettling = False)
17-03-18 07:10:19.294 -07 000000611 INF: Z Motor: Moving to -0.165383 mm, started at -0.165139 mm, distance = -0.24 um
17-03-18 07:10:19.304 -07 000000611 INF: FPGA: Xmit ZDACW 36128\n [Z Motor]
17-03-18 07:10:19.304 -07 000000474 INF: FPGA: Recv YRDPOS 151566
17-03-18 07:10:19.304 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:10:19.304 -07 000000576 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:19.304 -07 000000576 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:19.304 -07 000000576 INF: Y Motor: Moving 1353 steps-32
17-03-18 07:10:19.304 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:10:19.314 -07 000000611 INF: FPGA: 'ZDACW 36128' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:19.314 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:19.324 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:19.324 -07 000000579 INF: FPGA: Recv ZDACR 36128
17-03-18 07:10:19.334 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:10:19.334 -07 000000611 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 07:10:19.484 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 07:10:19.484 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 07:10:19.484 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:19.494 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 07:10:19.494 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 07:10:19.494 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:19.494 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:19.494 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:19.494 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 07:10:19.494 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 07:10:19.684 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 07:10:19.684 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 07:10:19.724 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:19.724 -07 000000501 INF: FPGA: Recv YRDPOS 153253
17-03-18 07:10:19.734 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:10:19.734 -07 000000576 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:19.734 -07 000000576 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 07:10:19.734 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.846 mm, average velocity = 2.191 mm/sec
17-03-18 07:10:20.684 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:20.684 -07 000000444 INF: FPGA: Recv YRDPOS 153253
17-03-18 07:10:20.694 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:20.694 -07 000000576 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:20.714 -07 000000576 INF: Y Motor: After move to 74.852608, error = -0.022041, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:20.714 -07 000000576 INF: Y Motor: Position error after settling (table move) = -45 encoder counts (-0.022 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:10:20.714 -07 000000576 INF: Y Motor: Moved to 74.8306 after 1413 ms (table move)
17-03-18 07:10:20.714 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.165383 mm (DAC = 36128)
17-03-18 07:10:20.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:20.714 -07 000000501 INF: FPGA: Recv ZSGSRD 35034
17-03-18 07:10:20.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:10:20.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:20.724 -07 000000447 INF: FPGA: Recv ZSGSRD 35034
17-03-18 07:10:20.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:20.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:20.734 -07 000000444 INF: FPGA: Recv ZSGSRD 35036
17-03-18 07:10:20.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:20.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:20.744 -07 000000474 INF: FPGA: Recv ZSGSRD 35039
17-03-18 07:10:20.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:20.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:20.754 -07 000000501 INF: FPGA: Recv ZSGSRD 35038
17-03-18 07:10:20.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:20.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:20.764 -07 000000541 INF: FPGA: Recv ZSGSRD 35039
17-03-18 07:10:20.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:20.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:20.774 -07 000000012 INF: FPGA: Recv ZSGSRD 35030
17-03-18 07:10:20.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:20.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:20.784 -07 000000608 INF: FPGA: Recv ZSGSRD 35031
17-03-18 07:10:20.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:20.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:20.794 -07 000000501 INF: FPGA: Recv ZSGSRD 35039
17-03-18 07:10:20.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:20.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:20.804 -07 000000611 INF: FPGA: Recv ZSGSRD 35034
17-03-18 07:10:20.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:20.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:20.814 -07 000000480 INF: FPGA: Recv ZPIEZORD 30785
17-03-18 07:10:20.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:20.824 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.513 V. Piezo Error = -9.4 V.
17-03-18 07:10:20.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.4 um, Read 10 ADC samples: Avg = 35035 (-164.5 uncal um), Error = 0.9 uncal um, Median = 35035 (-164.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35030 (-164.5 uncal um), Max = 35039 (-164.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:10:20.824 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35035, posNoise = 4, negNoise = 5
17-03-18 07:10:20.824 -07 000000610 INF: Z Motor: After move to -0.165383, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:20.824 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 106 ms (allowed 150 ms), total time = 1521 ms
17-03-18 07:10:20.824 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:20.874 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-18 07:10:20.874 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:20.874 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83056640625, Z-position -0.16539562439773. ----------
17-03-18 07:10:20.874 -07 000000610 INF: Cycle	158	Tile	19	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:20.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35951, sync = True, waitForSettling = True)
17-03-18 07:10:20.874 -07 000000610 INF: Z Motor: Moving to -0.164573 mm, started at -0.165396 mm, distance = 0.82 um
17-03-18 07:10:20.874 -07 000000610 INF: FPGA: Xmit ZDACW 35951\n [Z Motor]
17-03-18 07:10:20.874 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:10:20.884 -07 000000610 INF: FPGA: 'ZDACW 35951' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:10:20.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:20.884 -07 000000579 INF: FPGA: Recv ZDACR 35951
17-03-18 07:10:20.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:20.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:20.904 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.99219,
17-03-18 07:10:21.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:21.044 -07 000000512 INF: FPGA: Recv ZSGSRD 34907
17-03-18 07:10:21.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:21.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:21.054 -07 000000480 INF: FPGA: Recv ZSGSRD 34904
17-03-18 07:10:21.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:21.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:21.064 -07 000000447 INF: FPGA: Recv ZSGSRD 34912
17-03-18 07:10:21.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:21.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:21.074 -07 000000579 INF: FPGA: Recv ZSGSRD 34908
17-03-18 07:10:21.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:21.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:21.084 -07 000000501 INF: FPGA: Recv ZSGSRD 34910
17-03-18 07:10:21.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:21.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:21.094 -07 000000444 INF: FPGA: Recv ZSGSRD 34908
17-03-18 07:10:21.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:21.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:21.104 -07 000000437 INF: FPGA: Recv ZSGSRD 34902
17-03-18 07:10:21.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:21.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:21.114 -07 000000012 INF: FPGA: Recv ZSGSRD 34913
17-03-18 07:10:21.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:21.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:21.124 -07 000000455 INF: FPGA: Recv ZSGSRD 34906
17-03-18 07:10:21.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:21.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:21.134 -07 000000480 INF: FPGA: Recv ZSGSRD 34907
17-03-18 07:10:21.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:21.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:21.144 -07 000000474 INF: FPGA: Recv ZPIEZORD 30613
17-03-18 07:10:21.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:21.154 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.486 V. Piezo Error = -9.5 V.
17-03-18 07:10:21.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.6 um, Read 10 ADC samples: Avg = 34908 (-163.7 uncal um), Error = 0.9 uncal um, Median = 34908 (-163.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34902 (-163.7 uncal um), Max = 34913 (-163.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:10:21.154 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34908, posNoise = 5, negNoise = 6
17-03-18 07:10:21.154 -07 000000610 INF: Z Motor: After move to -0.164573, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:21.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:10:21.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:21.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:21.154 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:21.154 -07 000000487 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:21.154 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:21.154 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:21.154 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:21.154 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:21.154 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:21.154 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:21.154 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:10:21.154 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:21.164 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:10:21.164 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:21.164 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:10:21.164 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:21.174 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:10:21.174 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:10:21.174 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:10:21.174 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:10:21.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36128 150\n [Camera]
17-03-18 07:10:21.374 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:21.854 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:21.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:21.854 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:21.854 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:21.854 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-18 07:10:21.854 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:21.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:21.864 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:21.864 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:21.864 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-18 07:10:21.924 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:10:21.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:10:22.044 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36128 861
17-03-18 07:10:22.194 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:10:22.234 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:10:22.234 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 07:10:22.234 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:22.234 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 07:10:22.244 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 07:10:22.244 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:22.244 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:22.244 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:10:22.244 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:22.254 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 07:10:22.424 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:22.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:22.424 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:22.424 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:22.424 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) start.
17-03-18 07:10:22.434 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:22.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:22.434 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:22.434 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:22.434 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) start.
17-03-18 07:10:22.614 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:10:22.614 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:22.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36128 150' command took 2 ms to send, 1429 ms to get response, and 1439 ms overall
17-03-18 07:10:22.814 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 07:10:22.814 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:10:22.814 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:22.814 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 07:10:22.814 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 07:10:22.814 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:22.824 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:10:22.824 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 07:10:22.824 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 07:10:22.824 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:10:22.834 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 07:10:22.864 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-18 07:10:22.864 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 07:10:22.904 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 07:10:22.904 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 07:10:22.904 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 07:10:22.914 -07 000000611 INF: FPGA: Recv EMCUR 
17-03-18 07:10:22.914 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:10:22.914 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 07:10:23.414 -07 000000487 INF: FPGA: Recv EMIN
17-03-18 07:10:23.414 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-18 07:10:23.414 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 07:10:23.414 -07 000000611 INF: FPGA: Recv EMCUR 
17-03-18 07:10:23.424 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:10:23.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 07:10:23.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83056640625, Z-Position -0.164579749455726. ------
17-03-18 07:10:23.424 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:10:23.424 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13946 mm
17-03-18 07:10:23.424 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:23.434 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 30466, sync = True, waitForSettling = False)
17-03-18 07:10:23.434 -07 000000590 INF: Z Motor: Moving to -0.139464 mm, started at -0.164580 mm, distance = 25.12 um
17-03-18 07:10:23.434 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 07:10:23.434 -07 000000447 INF: Y Motor: Moving to 59.9126 mm, started at 74.8306 mm, delta = -14.9180 mm
17-03-18 07:10:23.434 -07 000000437 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:10:23.434 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 8 ms overall
17-03-18 07:10:23.434 -07 000000590 INF: FPGA: Xmit ZDACW 30466\n [Z Motor]
17-03-18 07:10:23.434 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:10:23.444 -07 000000590 INF: FPGA: 'ZDACW 30466' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:10:23.444 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:23.444 -07 000000487 INF: FPGA: Recv YRDPOS 153254
17-03-18 07:10:23.454 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:10:23.454 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 07:10:23.454 -07 000000447 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:23.454 -07 000000447 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 07:10:23.454 -07 000000447 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 07:10:23.464 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:23.464 -07 000000480 INF: FPGA: Recv ZDACR 30466
17-03-18 07:10:23.474 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:10:23.474 -07 000000590 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 07:10:23.474 -07 000000447 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 07:10:23.654 -07 000000611 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:10:23.654 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-18 07:10:25.104 -07 000000480 INF: FPGA: Recv YMVTO 122701 23904
17-03-18 07:10:25.104 -07 000000447 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1621 ms to get response, and 1647 ms overall
17-03-18 07:10:25.104 -07 000000447 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 07:10:25.104 -07 000000447 INF: Y Motor: To move from 74.831 to 59.913 (-14.918 mm) should take 23870 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-18 07:10:25.104 -07 000000447 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1647 ms, distance = 14.918 mm, average velocity = 9.058 mm/sec
17-03-18 07:10:26.264 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.005817,
17-03-18 07:10:26.934 -07 000000487 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:10:26.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:10:27.954 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:27.954 -07 000000480 INF: FPGA: Recv YRDPOS 122695
17-03-18 07:10:27.964 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:27.964 -07 000000447 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:28.004 -07 000000447 INF: Y Motor: After move to 59.912609, error = -0.002941, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:28.004 -07 000000447 INF: Y Motor: Position error after settling = -6 encoder counts (-0.003 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 07:10:28.004 -07 000000447 INF: Y Motor: Moved to 59.9097 after 4571 ms
17-03-18 07:10:28.014 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139464 mm (DAC = 30466)
17-03-18 07:10:28.014 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:28.014 -07 000000608 INF: FPGA: Recv ZSGSRD 31003
17-03-18 07:10:28.024 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:28.024 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:28.024 -07 000000012 INF: FPGA: Recv ZSGSRD 30999
17-03-18 07:10:28.034 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:28.034 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:28.034 -07 000000437 INF: FPGA: Recv ZSGSRD 30992
17-03-18 07:10:28.044 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:28.044 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:28.044 -07 000000447 INF: FPGA: Recv ZSGSRD 30995
17-03-18 07:10:28.054 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:28.054 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:28.054 -07 000000444 INF: FPGA: Recv ZSGSRD 30996
17-03-18 07:10:28.064 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:28.064 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:28.064 -07 000000012 INF: FPGA: Recv ZSGSRD 31001
17-03-18 07:10:28.074 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:28.074 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:28.074 -07 000000437 INF: FPGA: Recv ZSGSRD 30995
17-03-18 07:10:28.084 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:28.084 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:28.084 -07 000000447 INF: FPGA: Recv ZSGSRD 30999
17-03-18 07:10:28.094 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:28.094 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:28.094 -07 000000444 INF: FPGA: Recv ZSGSRD 30998
17-03-18 07:10:28.104 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:28.104 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:28.104 -07 000000012 INF: FPGA: Recv ZSGSRD 30998
17-03-18 07:10:28.114 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:28.114 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:28.114 -07 000000480 INF: FPGA: Recv ZPIEZORD 26483
17-03-18 07:10:28.124 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:28.124 -07 000000541 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.649 V. Piezo Error = -9.9 V.
17-03-18 07:10:28.124 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 30998 (-138.7 uncal um), Error = 0.8 uncal um, Median = 30998 (-138.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30992 (-138.6 uncal um), Max = 31003 (-138.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:10:28.124 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30998, posNoise = 5, negNoise = 6
17-03-18 07:10:28.124 -07 000000541 INF: Z Motor: After move to -0.139464, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:28.124 -07 000000541 INF: Z Motor: Settle wait time = 4575 ms, measure time = 112 ms (allowed 150 ms), total time = 4687 ms
17-03-18 07:10:28.124 -07 000000541 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:28.164 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4731 ms
17-03-18 07:10:28.164 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:28.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:28.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:28.164 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:28.164 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:28.164 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:10:28.164 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:28.164 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:10:28.164 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 07:10:28.184 -07 000000447 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-18 07:10:28.184 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:10:28.184 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:10:28.184 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:10:28.194 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 07:10:28.194 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 07:10:28.204 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:10:28.244 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:10:28.544 -07 000000474 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:10:28.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:10:28.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:10:28.714 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:10:28.714 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-18 07:10:28.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619985216, 0x0, 559484976) start.
17-03-18 07:10:28.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 503 ms to get response, and 512 ms overall
17-03-18 07:10:28.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619985216, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 07:10:28.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:28.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:10:28.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 283 ms.
17-03-18 07:10:28.914 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:10:28.914 -07 000000480 INF: Image SNR check: start
17-03-18 07:10:28.914 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:10:28.924 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:10:28.924 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:10:28.924 -07 000000480 INF: Image SNR check: pass  [peak (Max-Min)=112.40]
17-03-18 07:10:28.924 -07 000000480 INF: Autofocus start
17-03-18 07:10:28.924 -07 000000480 INF: MeasureProfile start
17-03-18 07:10:28.934 -07 000000480 INF: MeasureProfile done
17-03-18 07:10:28.934 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-18 07:10:28.934 -07 000000480 INF: Autofocus finished
17-03-18 07:10:29.124 -07 000000487 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:10:29.124 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:10:29.124 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.90966796875, Z-position -0.139461079981441. ----------
17-03-18 07:10:29.124 -07 000000610 INF: Cycle	158	Tile	1	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:29.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28990, sync = True, waitForSettling = True)
17-03-18 07:10:29.134 -07 000000610 INF: Z Motor: Moving to -0.132708 mm, started at -0.139461 mm, distance = 6.75 um
17-03-18 07:10:29.134 -07 000000610 INF: FPGA: Xmit ZDACW 28990\n [Z Motor]
17-03-18 07:10:29.134 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:10:29.144 -07 000000610 INF: FPGA: 'ZDACW 28990' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:29.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:29.144 -07 000000480 INF: FPGA: Recv ZDACR 28990
17-03-18 07:10:29.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:29.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:29.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:29.304 -07 000000474 INF: FPGA: Recv ZSGSRD 29951
17-03-18 07:10:29.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:29.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:29.314 -07 000000487 INF: FPGA: Recv ZSGSRD 29950
17-03-18 07:10:29.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:29.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:29.324 -07 000000512 INF: FPGA: Recv ZSGSRD 29948
17-03-18 07:10:29.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:29.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:29.334 -07 000000579 INF: FPGA: Recv ZSGSRD 29943
17-03-18 07:10:29.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:29.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:29.344 -07 000000455 INF: FPGA: Recv ZSGSRD 29950
17-03-18 07:10:29.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:29.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:29.354 -07 000000576 INF: FPGA: Recv ZSGSRD 29945
17-03-18 07:10:29.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:29.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:29.364 -07 000000512 INF: FPGA: Recv ZSGSRD 29948
17-03-18 07:10:29.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:29.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:29.374 -07 000000611 INF: FPGA: Recv ZSGSRD 29945
17-03-18 07:10:29.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:29.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:29.384 -07 000000541 INF: FPGA: Recv ZSGSRD 29943
17-03-18 07:10:29.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:29.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:29.394 -07 000000480 INF: FPGA: Recv ZSGSRD 29951
17-03-18 07:10:29.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:29.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:29.404 -07 000000474 INF: FPGA: Recv ZPIEZORD 25347
17-03-18 07:10:29.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:29.414 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.424 V. Piezo Error = -10.1 V.
17-03-18 07:10:29.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29947 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29948 (-131.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29943 (-131.9 uncal um), Max = 29951 (-131.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:10:29.414 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29947, posNoise = 4, negNoise = 4
17-03-18 07:10:29.414 -07 000000610 INF: Z Motor: After move to -0.132708, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:29.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 07:10:29.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:29.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:29.414 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:29.414 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:29.414 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:29.414 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:29.414 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:29.414 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:29.414 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:29.414 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:29.414 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:10:29.414 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 07:10:29.414 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:10:29.424 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:29.424 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:10:29.424 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:10:29.434 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 07:10:29.434 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:29.444 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 07:10:29.444 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:29.454 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 07:10:29.454 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 35 ms.
17-03-18 07:10:29.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 29167 150\n [Camera]
17-03-18 07:10:29.654 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:30.124 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:30.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:30.124 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:30.134 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:30.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:30.134 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:30.134 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:30.134 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 07:10:30.134 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:30.134 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 584028768, 0x0, 391868352) start.
17-03-18 07:10:30.324 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29167 861
17-03-18 07:10:30.474 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:10:30.514 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 07:10:30.514 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 07:10:30.514 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:30.514 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:30.514 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 584028768, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 07:10:30.514 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:10:30.514 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:30.524 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 07:10:30.524 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:30.524 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 07:10:30.704 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:30.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:30.704 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:30.704 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:30.704 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 07:10:30.704 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:30.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:30.704 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:30.704 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:30.704 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:10:30.894 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-18 07:10:30.894 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:30.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 29167 150' command took 2 ms to send, 1432 ms to get response, and 1440 ms overall
17-03-18 07:10:30.894 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133107
17-03-18 07:10:31.004 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13311 mm
17-03-18 07:10:31.004 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:31.014 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 29077, sync = True, waitForSettling = False)
17-03-18 07:10:31.014 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 07:10:31.014 -07 000000487 INF: Y Motor: Moving to 60.7426 mm, started at 59.9097 mm, delta = 0.8329 mm
17-03-18 07:10:31.014 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:31.014 -07 000000437 INF: Z Motor: Moving to -0.133106 mm, started at -0.132709 mm, distance = -0.40 um
17-03-18 07:10:31.014 -07 000000611 INF: FPGA: Recv YRDPOS 122695
17-03-18 07:10:31.024 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:31.024 -07 000000487 INF: Y Motor: Encoder = 122695 = motor step 95855.5 = 59.9097 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:31.024 -07 000000487 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:31.024 -07 000000487 INF: Y Motor: Moving 1333 steps0
17-03-18 07:10:31.024 -07 000000437 INF: FPGA: Xmit ZDACW 29077\n [Z Motor]
17-03-18 07:10:31.024 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:10:31.034 -07 000000437 INF: FPGA: 'ZDACW 29077' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 07:10:31.034 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:31.034 -07 000000447 INF: FPGA: Recv ZDACR 29077
17-03-18 07:10:31.044 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:31.044 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:31.044 -07 000000437 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 07:10:31.094 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 07:10:31.094 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 07:10:31.094 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:31.104 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 07:10:31.104 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 07:10:31.104 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:31.104 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:31.104 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 07:10:31.104 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 07:10:31.114 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 07:10:31.414 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-18 07:10:31.414 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:10:31.464 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:31.464 -07 000000447 INF: FPGA: Recv YRDPOS 124378
17-03-18 07:10:31.474 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:10:31.474 -07 000000487 INF: Y Motor: Encoder = 124378 = motor step 97170.3 = 60.7314 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:31.474 -07 000000487 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 07:10:31.474 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.098 mm/sec
17-03-18 07:10:31.624 -07 000000474 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.027603,
17-03-18 07:10:31.934 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:10:31.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:10:32.434 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:32.434 -07 000000012 INF: FPGA: Recv YRDPOS 124379
17-03-18 07:10:32.444 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:10:32.444 -07 000000487 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:32.474 -07 000000487 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:32.474 -07 000000487 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:10:32.474 -07 000000487 INF: Y Motor: Moved to 60.7319 after 1465 ms (table move)
17-03-18 07:10:32.474 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133106 mm (DAC = 29077)
17-03-18 07:10:32.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.484 -07 000000541 INF: FPGA: Recv ZSGSRD 30009
17-03-18 07:10:32.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:10:32.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.484 -07 000000590 INF: FPGA: Recv ZSGSRD 30009
17-03-18 07:10:32.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:10:32.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.494 -07 000000455 INF: FPGA: Recv ZSGSRD 30000
17-03-18 07:10:32.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:32.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.504 -07 000000444 INF: FPGA: Recv ZSGSRD 30003
17-03-18 07:10:32.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.514 -07 000000576 INF: FPGA: Recv ZSGSRD 30011
17-03-18 07:10:32.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.524 -07 000000501 INF: FPGA: Recv ZSGSRD 30010
17-03-18 07:10:32.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.534 -07 000000447 INF: FPGA: Recv ZSGSRD 30004
17-03-18 07:10:32.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.544 -07 000000474 INF: FPGA: Recv ZSGSRD 30011
17-03-18 07:10:32.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.554 -07 000000541 INF: FPGA: Recv ZSGSRD 30014
17-03-18 07:10:32.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.564 -07 000000512 INF: FPGA: Recv ZSGSRD 30002
17-03-18 07:10:32.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:32.574 -07 000000012 INF: FPGA: Recv ZPIEZORD 25470
17-03-18 07:10:32.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.584 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -10.0 V.
17-03-18 07:10:32.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30007 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30009 (-132.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30000 (-132.3 uncal um), Max = 30014 (-132.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:10:32.584 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30007, posNoise = 7, negNoise = 7
17-03-18 07:10:32.584 -07 000000610 INF: Z Motor: After move to -0.133106, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:32.584 -07 000000610 INF: Z Motor: Settle wait time = 1467 ms, measure time = 102 ms (allowed 150 ms), total time = 1569 ms
17-03-18 07:10:32.584 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:32.634 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 07:10:32.634 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:32.634 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.133094685748956. ----------
17-03-18 07:10:32.634 -07 000000610 INF: Cycle	158	Tile	2	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:32.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28901, sync = True, waitForSettling = True)
17-03-18 07:10:32.634 -07 000000610 INF: Z Motor: Moving to -0.132300 mm, started at -0.133095 mm, distance = 0.79 um
17-03-18 07:10:32.634 -07 000000610 INF: FPGA: Xmit ZDACW 28901\n [Z Motor]
17-03-18 07:10:32.634 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 07:10:32.644 -07 000000610 INF: FPGA: 'ZDACW 28901' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:10:32.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:32.644 -07 000000474 INF: FPGA: Recv ZDACR 28901
17-03-18 07:10:32.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:32.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.804 -07 000000512 INF: FPGA: Recv ZSGSRD 29882
17-03-18 07:10:32.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:32.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.814 -07 000000012 INF: FPGA: Recv ZSGSRD 29881
17-03-18 07:10:32.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.824 -07 000000447 INF: FPGA: Recv ZSGSRD 29886
17-03-18 07:10:32.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.834 -07 000000474 INF: FPGA: Recv ZSGSRD 29882
17-03-18 07:10:32.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.844 -07 000000501 INF: FPGA: Recv ZSGSRD 29890
17-03-18 07:10:32.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.854 -07 000000541 INF: FPGA: Recv ZSGSRD 29885
17-03-18 07:10:32.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.864 -07 000000447 INF: FPGA: Recv ZSGSRD 29886
17-03-18 07:10:32.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.874 -07 000000611 INF: FPGA: Recv ZSGSRD 29883
17-03-18 07:10:32.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.884 -07 000000437 INF: FPGA: Recv ZSGSRD 29881
17-03-18 07:10:32.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:32.894 -07 000000012 INF: FPGA: Recv ZSGSRD 29882
17-03-18 07:10:32.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:32.904 -07 000000576 INF: FPGA: Recv ZPIEZORD 25322
17-03-18 07:10:32.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:32.914 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -10.0 V.
17-03-18 07:10:32.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29884 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29882 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29881 (-131.5 uncal um), Max = 29890 (-131.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 07:10:32.914 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29884, posNoise = 6, negNoise = 3
17-03-18 07:10:32.914 -07 000000610 INF: Z Motor: After move to -0.132300, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:32.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 07:10:32.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:32.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:32.914 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:32.914 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:32.914 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:32.914 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:32.914 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:32.914 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:32.914 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:32.914 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:32.914 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 07:10:32.914 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:32.924 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 07:10:32.924 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:32.924 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:10:32.924 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:32.934 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:10:32.934 -07 000000437 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:10:32.934 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:10:32.934 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:10:32.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 29077 150\n [Camera]
17-03-18 07:10:33.134 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:33.614 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:33.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:33.614 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:33.614 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:33.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:33.614 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:33.624 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:33.624 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) start.
17-03-18 07:10:33.624 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:33.624 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 07:10:33.804 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29077 861
17-03-18 07:10:33.954 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:10:34.014 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 07:10:34.014 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 07:10:34.014 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:34.024 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:34.024 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 07:10:34.024 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 07:10:34.024 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 07:10:34.024 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:34.034 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:34.034 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 07:10:34.184 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:34.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:34.184 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:34.184 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:34.194 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 07:10:34.194 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:34.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:34.194 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:34.194 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:34.194 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 07:10:34.384 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1434
17-03-18 07:10:34.384 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:34.384 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 29077 150' command took 2 ms to send, 1431 ms to get response, and 1441 ms overall
17-03-18 07:10:34.384 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133211
17-03-18 07:10:34.384 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13321 mm
17-03-18 07:10:34.384 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:34.384 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 07:10:34.384 -07 000000474 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-18 07:10:34.384 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:34.384 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29100, sync = True, waitForSettling = False)
17-03-18 07:10:34.384 -07 000000480 INF: Z Motor: Moving to -0.133211 mm, started at -0.132305 mm, distance = -0.91 um
17-03-18 07:10:34.384 -07 000000579 INF: FPGA: Recv YRDPOS 124379
17-03-18 07:10:34.394 -07 000000480 INF: FPGA: Xmit ZDACW 29100\n [Z Motor]
17-03-18 07:10:34.394 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:10:34.394 -07 000000474 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:34.394 -07 000000474 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:34.394 -07 000000474 INF: Y Motor: Moving 1345 steps-23
17-03-18 07:10:34.394 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 07:10:34.404 -07 000000480 INF: FPGA: 'ZDACW 29100' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 07:10:34.404 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:34.404 -07 000000012 INF: FPGA: Recv ZDACR 29100
17-03-18 07:10:34.414 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:34.414 -07 000000480 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 07:10:34.414 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:34.594 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 07:10:34.594 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 07:10:34.594 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:34.594 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 07:10:34.594 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 07:10:34.594 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:34.604 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:34.604 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 07:10:34.604 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:34.604 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 07:10:34.784 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 07:10:34.784 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 07:10:34.834 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:34.844 -07 000000541 INF: FPGA: Recv YRDPOS 126080
17-03-18 07:10:34.854 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:34.854 -07 000000474 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:34.854 -07 000000474 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 07:10:34.854 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.112 mm/sec
17-03-18 07:10:35.804 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:35.804 -07 000000512 INF: FPGA: Recv YRDPOS 126080
17-03-18 07:10:35.814 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:35.814 -07 000000474 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:35.844 -07 000000474 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:35.844 -07 000000474 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:10:35.844 -07 000000474 INF: Y Motor: Moved to 61.5625 after 1456 ms (table move)
17-03-18 07:10:35.844 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133211 mm (DAC = 29100)
17-03-18 07:10:35.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:35.844 -07 000000608 INF: FPGA: Recv ZSGSRD 30030
17-03-18 07:10:35.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:10:35.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:35.854 -07 000000444 INF: FPGA: Recv ZSGSRD 30029
17-03-18 07:10:35.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:35.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:35.864 -07 000000512 INF: FPGA: Recv ZSGSRD 30025
17-03-18 07:10:35.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:35.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:35.874 -07 000000579 INF: FPGA: Recv ZSGSRD 30023
17-03-18 07:10:35.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:35.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:35.884 -07 000000447 INF: FPGA: Recv ZSGSRD 30017
17-03-18 07:10:35.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:35.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:35.894 -07 000000541 INF: FPGA: Recv ZSGSRD 30027
17-03-18 07:10:35.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:35.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:35.904 -07 000000590 INF: FPGA: Recv ZSGSRD 30031
17-03-18 07:10:35.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:35.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:35.914 -07 000000447 INF: FPGA: Recv ZSGSRD 30031
17-03-18 07:10:35.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:35.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:35.924 -07 000000608 INF: FPGA: Recv ZSGSRD 30027
17-03-18 07:10:35.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:35.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:35.934 -07 000000541 INF: FPGA: Recv ZSGSRD 30025
17-03-18 07:10:35.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:35.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:35.944 -07 000000512 INF: FPGA: Recv ZPIEZORD 25556
17-03-18 07:10:35.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:35.954 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.8 V.
17-03-18 07:10:35.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30026 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30027 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30017 (-132.4 uncal um), Max = 30031 (-132.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 07:10:35.954 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30026, posNoise = 5, negNoise = 9
17-03-18 07:10:35.954 -07 000000610 INF: Z Motor: After move to -0.133211, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:35.954 -07 000000610 INF: Z Motor: Settle wait time = 1458 ms, measure time = 108 ms (allowed 150 ms), total time = 1566 ms
17-03-18 07:10:35.954 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:36.004 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 07:10:36.004 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:36.004 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.13321674577965. ----------
17-03-18 07:10:36.004 -07 000000610 INF: Cycle	158	Tile	3	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:36.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28923, sync = True, waitForSettling = True)
17-03-18 07:10:36.004 -07 000000610 INF: Z Motor: Moving to -0.132401 mm, started at -0.133217 mm, distance = 0.82 um
17-03-18 07:10:36.004 -07 000000610 INF: FPGA: Xmit ZDACW 28923\n [Z Motor]
17-03-18 07:10:36.004 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 07:10:36.014 -07 000000610 INF: FPGA: 'ZDACW 28923' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:10:36.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:36.014 -07 000000455 INF: FPGA: Recv ZDACR 28923
17-03-18 07:10:36.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:36.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:36.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:36.174 -07 000000608 INF: FPGA: Recv ZSGSRD 29901
17-03-18 07:10:36.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:36.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:36.184 -07 000000512 INF: FPGA: Recv ZSGSRD 29902
17-03-18 07:10:36.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:36.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:36.194 -07 000000579 INF: FPGA: Recv ZSGSRD 29898
17-03-18 07:10:36.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:36.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:36.204 -07 000000501 INF: FPGA: Recv ZSGSRD 29895
17-03-18 07:10:36.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:36.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:36.214 -07 000000541 INF: FPGA: Recv ZSGSRD 29903
17-03-18 07:10:36.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:36.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:36.224 -07 000000474 INF: FPGA: Recv ZSGSRD 29908
17-03-18 07:10:36.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:36.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:36.234 -07 000000480 INF: FPGA: Recv ZSGSRD 29897
17-03-18 07:10:36.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:36.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:36.244 -07 000000576 INF: FPGA: Recv ZSGSRD 29897
17-03-18 07:10:36.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:36.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:36.254 -07 000000541 INF: FPGA: Recv ZSGSRD 29900
17-03-18 07:10:36.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:36.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:36.264 -07 000000474 INF: FPGA: Recv ZSGSRD 29902
17-03-18 07:10:36.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:36.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:36.274 -07 000000455 INF: FPGA: Recv ZPIEZORD 25379
17-03-18 07:10:36.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:36.284 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -9.9 V.
17-03-18 07:10:36.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29900 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29900 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29895 (-131.6 uncal um), Max = 29908 (-131.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:10:36.284 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29900, posNoise = 8, negNoise = 5
17-03-18 07:10:36.284 -07 000000610 INF: Z Motor: After move to -0.132401, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:36.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:10:36.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:36.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:36.284 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:36.284 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:36.284 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:36.284 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:36.284 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:36.284 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:36.284 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:36.284 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:36.284 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:10:36.284 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:36.294 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:10:36.294 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:36.294 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:10:36.294 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:36.304 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:10:36.304 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:10:36.304 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:10:36.304 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:10:36.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 29100 150\n [Camera]
17-03-18 07:10:36.504 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:36.934 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:10:36.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:10:36.984 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.0344,
17-03-18 07:10:36.984 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:36.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:36.984 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:36.984 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:36.984 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 07:10:36.994 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:36.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:36.994 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:36.994 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:36.994 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 07:10:37.184 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29100 861
17-03-18 07:10:37.324 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:10:37.364 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 07:10:37.364 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 07:10:37.364 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:37.364 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 07:10:37.364 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 07:10:37.364 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:37.374 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:37.374 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:10:37.374 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:37.374 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:10:37.554 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:37.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:37.554 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:37.554 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:37.554 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 07:10:37.564 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:37.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:37.564 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:37.564 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:37.564 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 07:10:37.744 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:10:37.744 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:37.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 29100 150' command took 2 ms to send, 1429 ms to get response, and 1439 ms overall
17-03-18 07:10:37.754 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.132751
17-03-18 07:10:37.754 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13275 mm
17-03-18 07:10:37.754 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:37.754 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 07:10:37.754 -07 000000480 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-18 07:10:37.754 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 28999, sync = True, waitForSettling = False)
17-03-18 07:10:37.754 -07 000000611 INF: Z Motor: Moving to -0.132749 mm, started at -0.132407 mm, distance = -0.34 um
17-03-18 07:10:37.764 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:37.764 -07 000000590 INF: FPGA: Recv YRDPOS 126080
17-03-18 07:10:37.774 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 07:10:37.774 -07 000000480 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:37.774 -07 000000480 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:37.774 -07 000000480 INF: Y Motor: Moving 1344 steps-21
17-03-18 07:10:37.784 -07 000000611 INF: FPGA: Xmit ZDACW 28999\n [Z Motor]
17-03-18 07:10:37.784 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 07:10:37.794 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:37.794 -07 000000611 INF: FPGA: 'ZDACW 28999' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-18 07:10:37.814 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:37.814 -07 000000512 INF: FPGA: Recv ZDACR 28999
17-03-18 07:10:37.824 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:10:37.824 -07 000000611 INF: Z Motor: MoveAbsStepped took 61 ms (did NOT wait for settling yet))
17-03-18 07:10:37.944 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 07:10:37.944 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 07:10:37.944 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:37.944 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 07:10:37.944 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 07:10:37.944 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:37.944 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:37.944 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 07:10:37.954 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:37.954 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 07:10:38.164 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 07:10:38.164 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:10:38.224 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:38.224 -07 000000541 INF: FPGA: Recv YRDPOS 127783
17-03-18 07:10:38.234 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:10:38.234 -07 000000480 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:38.234 -07 000000480 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 07:10:38.234 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-18 07:10:39.184 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:39.184 -07 000000012 INF: FPGA: Recv YRDPOS 127783
17-03-18 07:10:39.194 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:39.194 -07 000000480 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:39.224 -07 000000480 INF: Y Motor: After move to 62.402607, error = -0.008564, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:39.224 -07 000000480 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:10:39.224 -07 000000480 INF: Y Motor: Moved to 62.3940 after 1466 ms (table move)
17-03-18 07:10:39.224 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132749 mm (DAC = 28999)
17-03-18 07:10:39.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.224 -07 000000012 INF: FPGA: Recv ZSGSRD 29957
17-03-18 07:10:39.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:10:39.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.234 -07 000000576 INF: FPGA: Recv ZSGSRD 29947
17-03-18 07:10:39.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.244 -07 000000590 INF: FPGA: Recv ZSGSRD 29951
17-03-18 07:10:39.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.254 -07 000000512 INF: FPGA: Recv ZSGSRD 29953
17-03-18 07:10:39.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.264 -07 000000447 INF: FPGA: Recv ZSGSRD 29957
17-03-18 07:10:39.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.274 -07 000000455 INF: FPGA: Recv ZSGSRD 29956
17-03-18 07:10:39.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.284 -07 000000541 INF: FPGA: Recv ZSGSRD 29961
17-03-18 07:10:39.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.294 -07 000000487 INF: FPGA: Recv ZSGSRD 29957
17-03-18 07:10:39.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.304 -07 000000447 INF: FPGA: Recv ZSGSRD 29955
17-03-18 07:10:39.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.314 -07 000000012 INF: FPGA: Recv ZSGSRD 29949
17-03-18 07:10:39.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:39.324 -07 000000541 INF: FPGA: Recv ZPIEZORD 25464
17-03-18 07:10:39.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.334 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.425 V. Piezo Error = -9.9 V.
17-03-18 07:10:39.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29954 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29956 (-132.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29947 (-131.9 uncal um), Max = 29961 (-132.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:10:39.334 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29954, posNoise = 7, negNoise = 7
17-03-18 07:10:39.334 -07 000000610 INF: Z Motor: After move to -0.132749, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:39.334 -07 000000610 INF: Z Motor: Settle wait time = 1468 ms, measure time = 104 ms (allowed 150 ms), total time = 1572 ms
17-03-18 07:10:39.334 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:39.384 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 07:10:39.384 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:39.384 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39404296875, Z-position -0.132754202505443. ----------
17-03-18 07:10:39.384 -07 000000610 INF: Cycle	158	Tile	4	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:39.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28823, sync = True, waitForSettling = True)
17-03-18 07:10:39.384 -07 000000610 INF: Z Motor: Moving to -0.131943 mm, started at -0.132754 mm, distance = 0.81 um
17-03-18 07:10:39.384 -07 000000610 INF: FPGA: Xmit ZDACW 28823\n [Z Motor]
17-03-18 07:10:39.384 -07 000000480 INF: FPGA: Recv ZDACW
17-03-18 07:10:39.394 -07 000000610 INF: FPGA: 'ZDACW 28823' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:10:39.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:39.394 -07 000000579 INF: FPGA: Recv ZDACR 28823
17-03-18 07:10:39.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:39.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.554 -07 000000447 INF: FPGA: Recv ZSGSRD 29827
17-03-18 07:10:39.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:39.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.564 -07 000000541 INF: FPGA: Recv ZSGSRD 29824
17-03-18 07:10:39.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.574 -07 000000590 INF: FPGA: Recv ZSGSRD 29826
17-03-18 07:10:39.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.584 -07 000000611 INF: FPGA: Recv ZSGSRD 29830
17-03-18 07:10:39.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.594 -07 000000474 INF: FPGA: Recv ZSGSRD 29832
17-03-18 07:10:39.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.604 -07 000000541 INF: FPGA: Recv ZSGSRD 29833
17-03-18 07:10:39.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.614 -07 000000611 INF: FPGA: Recv ZSGSRD 29828
17-03-18 07:10:39.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.624 -07 000000501 INF: FPGA: Recv ZSGSRD 29828
17-03-18 07:10:39.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.634 -07 000000012 INF: FPGA: Recv ZSGSRD 29825
17-03-18 07:10:39.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:39.644 -07 000000444 INF: FPGA: Recv ZSGSRD 29826
17-03-18 07:10:39.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:39.654 -07 000000487 INF: FPGA: Recv ZPIEZORD 25300
17-03-18 07:10:39.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:39.664 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.9 V.
17-03-18 07:10:39.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29828 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29828 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29824 (-131.1 uncal um), Max = 29833 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:10:39.664 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29828, posNoise = 5, negNoise = 4
17-03-18 07:10:39.664 -07 000000610 INF: Z Motor: After move to -0.131943, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:39.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:10:39.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:39.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:39.664 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:39.664 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:39.664 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:39.664 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:39.664 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:39.664 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:39.664 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:10:39.664 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:39.664 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:39.664 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:39.674 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:10:39.674 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:39.674 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:10:39.674 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:39.684 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:10:39.684 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:10:39.684 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:10:39.684 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:10:39.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28999 150\n [Camera]
17-03-18 07:10:39.894 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:40.364 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:40.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:40.364 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:40.364 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:40.364 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 07:10:40.364 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:40.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:40.374 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:40.374 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:40.374 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 07:10:40.554 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28999 861
17-03-18 07:10:40.704 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:10:40.744 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 07:10:40.744 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 07:10:40.744 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:40.744 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 07:10:40.744 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 07:10:40.744 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:40.754 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:40.754 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:10:40.754 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:40.764 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 07:10:40.944 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:40.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:40.944 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:40.944 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:40.944 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 07:10:40.944 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:40.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:40.944 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:40.944 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:40.944 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 07:10:41.124 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:10:41.134 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:41.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28999 150' command took 2 ms to send, 1430 ms to get response, and 1439 ms overall
17-03-18 07:10:41.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 07:10:41.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39404296875, Z-Position -0.131944751775581. ------
17-03-18 07:10:41.134 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:10:41.134 -07 000000437 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13849 mm
17-03-18 07:10:41.134 -07 000000437 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:41.134 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30254, sync = True, waitForSettling = False)
17-03-18 07:10:41.134 -07 000000579 INF: Z Motor: Moving to -0.138494 mm, started at -0.131945 mm, distance = -6.55 um
17-03-18 07:10:41.134 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 07:10:41.144 -07 000000487 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:10:41.144 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:10:41.144 -07 000000579 INF: FPGA: Xmit ZDACW 30254\n [Z Motor]
17-03-18 07:10:41.144 -07 000000455 INF: Y Motor: Moving to 63.2326 mm, started at 62.3940 mm, delta = 0.8386 mm
17-03-18 07:10:41.144 -07 000000012 INF: FPGA: Recv ZDACW
17-03-18 07:10:41.154 -07 000000579 INF: FPGA: 'ZDACW 30254' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 07:10:41.154 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:41.154 -07 000000012 INF: FPGA: Recv ZDACR 30254
17-03-18 07:10:41.164 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:41.164 -07 000000579 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 07:10:41.164 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:41.164 -07 000000576 INF: FPGA: Recv YRDPOS 127783
17-03-18 07:10:41.174 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 07:10:41.174 -07 000000455 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:41.174 -07 000000455 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:41.174 -07 000000455 INF: Y Motor: Moving 1342 steps-18
17-03-18 07:10:41.174 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:10:41.184 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:41.324 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 07:10:41.324 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 07:10:41.324 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:41.324 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 07:10:41.324 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 07:10:41.324 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:41.324 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:10:41.324 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 07:10:41.324 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:10:41.334 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 07:10:41.374 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:10:41.374 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 07:10:41.554 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 07:10:41.554 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 07:10:41.614 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:41.614 -07 000000512 INF: FPGA: Recv YRDPOS 129479
17-03-18 07:10:41.624 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:10:41.624 -07 000000455 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:41.624 -07 000000455 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 07:10:41.624 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.161 mm/sec
17-03-18 07:10:41.934 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:10:41.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:10:42.344 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.989471,
17-03-18 07:10:42.574 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:42.574 -07 000000590 INF: FPGA: Recv YRDPOS 129479
17-03-18 07:10:42.584 -07 000000455 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:42.584 -07 000000455 INF: Y Motor: Encoder = 129479 = motor step 101155.5 = 63.2222 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:42.614 -07 000000455 INF: Y Motor: After move to 63.232609, error = -0.010441, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:42.614 -07 000000455 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:10:42.614 -07 000000455 INF: Y Motor: Moved to 63.2222 after 1473 ms (table move)
17-03-18 07:10:42.614 -07 000000437 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138494 mm (DAC = 30254)
17-03-18 07:10:42.614 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:42.624 -07 000000579 INF: FPGA: Recv ZSGSRD 30846
17-03-18 07:10:42.624 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:10:42.624 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:42.624 -07 000000512 INF: FPGA: Recv ZSGSRD 30852
17-03-18 07:10:42.634 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:42.634 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:42.634 -07 000000480 INF: FPGA: Recv ZSGSRD 30848
17-03-18 07:10:42.644 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:42.644 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:42.644 -07 000000611 INF: FPGA: Recv ZSGSRD 30852
17-03-18 07:10:42.654 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:42.654 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:42.654 -07 000000590 INF: FPGA: Recv ZSGSRD 30840
17-03-18 07:10:42.664 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:42.664 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:42.664 -07 000000512 INF: FPGA: Recv ZSGSRD 30847
17-03-18 07:10:42.674 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:42.674 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:42.674 -07 000000444 INF: FPGA: Recv ZSGSRD 30851
17-03-18 07:10:42.684 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:42.684 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:42.684 -07 000000447 INF: FPGA: Recv ZSGSRD 30849
17-03-18 07:10:42.694 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:42.694 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:42.694 -07 000000541 INF: FPGA: Recv ZSGSRD 30853
17-03-18 07:10:42.704 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:42.704 -07 000000437 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:42.704 -07 000000501 INF: FPGA: Recv ZSGSRD 30857
17-03-18 07:10:42.714 -07 000000437 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:42.714 -07 000000437 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:42.714 -07 000000444 INF: FPGA: Recv ZPIEZORD 26691
17-03-18 07:10:42.724 -07 000000437 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:42.724 -07 000000437 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.616 V. Piezo Error = -9.1 V.
17-03-18 07:10:42.724 -07 000000437 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30850 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30850 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30840 (-137.6 uncal um), Max = 30857 (-137.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 07:10:42.724 -07 000000437 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30850, posNoise = 7, negNoise = 10
17-03-18 07:10:42.724 -07 000000437 INF: Z Motor: After move to -0.138494, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:42.724 -07 000000437 INF: Z Motor: Settle wait time = 1479 ms, measure time = 105 ms (allowed 150 ms), total time = 1584 ms
17-03-18 07:10:42.724 -07 000000437 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:42.774 -07 000000437 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 07:10:42.774 -07 000000437 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:42.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:42.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:42.774 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:42.774 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:42.774 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:10:42.774 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:42.774 -07 000000487 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:42.774 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:10:42.774 -07 000000487 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:10:42.774 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:10:42.794 -07 000000487 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 07:10:42.794 -07 000000487 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 07:10:42.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:10:42.844 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:10:43.144 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:10:43.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:10:43.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:10:43.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) start.
17-03-18 07:10:43.184 -07 000000579 INF: FPGA: Recv @CAMSNAP 382
17-03-18 07:10:43.184 -07 000000447 INF: FPGA: Recv CAMSNAP
17-03-18 07:10:43.184 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 386 ms overall
17-03-18 07:10:43.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 07:10:43.264 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:43.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:10:43.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 07:10:43.284 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:10:43.284 -07 000000579 INF: Autofocus start
17-03-18 07:10:43.284 -07 000000579 INF: MeasureProfile start
17-03-18 07:10:43.284 -07 000000611 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:10:43.294 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:10:43.294 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:10:43.304 -07 000000579 INF: MeasureProfile done
17-03-18 07:10:43.304 -07 000000579 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 07:10:43.304 -07 000000579 INF: Autofocus finished
17-03-18 07:10:43.494 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:10:43.494 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 07:10:43.494 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22216796875, Z-position -0.138510296584461. ----------
17-03-18 07:10:43.504 -07 000000610 INF: Cycle	158	Tile	5	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:43.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28732, sync = True, waitForSettling = True)
17-03-18 07:10:43.504 -07 000000610 INF: Z Motor: Moving to -0.131527 mm, started at -0.138510 mm, distance = 6.98 um
17-03-18 07:10:43.504 -07 000000610 INF: FPGA: Xmit ZDACW 28732\n [Z Motor]
17-03-18 07:10:43.504 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 07:10:43.514 -07 000000610 INF: FPGA: 'ZDACW 28732' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:10:43.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:43.514 -07 000000474 INF: FPGA: Recv ZDACR 28732
17-03-18 07:10:43.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:43.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:43.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:43.674 -07 000000541 INF: FPGA: Recv ZSGSRD 29763
17-03-18 07:10:43.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:43.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:43.684 -07 000000501 INF: FPGA: Recv ZSGSRD 29759
17-03-18 07:10:43.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:43.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:43.694 -07 000000455 INF: FPGA: Recv ZSGSRD 29765
17-03-18 07:10:43.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:43.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:43.704 -07 000000611 INF: FPGA: Recv ZSGSRD 29765
17-03-18 07:10:43.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:43.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:43.714 -07 000000444 INF: FPGA: Recv ZSGSRD 29762
17-03-18 07:10:43.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:43.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:43.724 -07 000000012 INF: FPGA: Recv ZSGSRD 29766
17-03-18 07:10:43.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:43.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:43.734 -07 000000487 INF: FPGA: Recv ZSGSRD 29771
17-03-18 07:10:43.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:43.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:43.744 -07 000000579 INF: FPGA: Recv ZSGSRD 29763
17-03-18 07:10:43.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:43.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:43.754 -07 000000480 INF: FPGA: Recv ZSGSRD 29763
17-03-18 07:10:43.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:43.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:43.764 -07 000000501 INF: FPGA: Recv ZSGSRD 29760
17-03-18 07:10:43.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:43.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:43.774 -07 000000608 INF: FPGA: Recv ZPIEZORD 25256
17-03-18 07:10:43.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:43.784 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.384 V. Piezo Error = -9.9 V.
17-03-18 07:10:43.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29764 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29763 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29759 (-130.7 uncal um), Max = 29771 (-130.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:10:43.784 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29764, posNoise = 7, negNoise = 5
17-03-18 07:10:43.784 -07 000000610 INF: Z Motor: After move to -0.131527, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:43.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 07:10:43.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:43.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:43.784 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:43.784 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:43.784 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:43.784 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:43.784 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:43.784 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:43.784 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:43.784 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:43.784 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:10:43.784 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:43.784 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:10:43.784 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:43.784 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:10:43.784 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:43.794 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:10:43.794 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:10:43.804 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 07:10:43.804 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:10:43.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28908 150\n [Camera]
17-03-18 07:10:44.004 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:44.484 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:44.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:44.484 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:44.484 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:44.484 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 07:10:44.484 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:44.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:44.484 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:44.484 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:44.484 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 07:10:44.674 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28908 861
17-03-18 07:10:44.824 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:10:44.864 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 07:10:44.864 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 07:10:44.864 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:44.864 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 07:10:44.864 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 07:10:44.864 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:44.864 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:10:44.864 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:10:44.864 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:10:44.874 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:10:45.054 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:45.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:45.054 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:45.054 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:45.054 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:45.054 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 07:10:45.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:45.054 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:45.054 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:45.054 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 07:10:45.244 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP 1434
17-03-18 07:10:45.244 -07 000000611 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:45.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28908 150' command took 2 ms to send, 1434 ms to get response, and 1441 ms overall
17-03-18 07:10:45.244 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.131962
17-03-18 07:10:45.244 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13196 mm
17-03-18 07:10:45.244 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:45.254 -07 000000437 INF: Z Motor: Entering MoveAbsStepped (DAC = 28827, sync = True, waitForSettling = False)
17-03-18 07:10:45.254 -07 000000437 INF: Z Motor: Moving to -0.131962 mm, started at -0.131534 mm, distance = -0.43 um
17-03-18 07:10:45.254 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 07:10:45.254 -07 000000444 INF: Y Motor: Moving to 64.0626 mm, started at 63.2222 mm, delta = 0.8404 mm
17-03-18 07:10:45.254 -07 000000437 INF: FPGA: Xmit ZDACW 28827\n [Z Motor]
17-03-18 07:10:45.254 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:10:45.264 -07 000000437 INF: FPGA: 'ZDACW 28827' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:45.264 -07 000000437 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:45.264 -07 000000447 INF: FPGA: Recv ZDACR 28827
17-03-18 07:10:45.274 -07 000000437 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:45.274 -07 000000437 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 07:10:45.274 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:45.274 -07 000000608 INF: FPGA: Recv YRDPOS 129480
17-03-18 07:10:45.284 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 07:10:45.284 -07 000000444 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:45.284 -07 000000444 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:45.284 -07 000000444 INF: Y Motor: Moving 1344 steps-21
17-03-18 07:10:45.284 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:45.444 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 07:10:45.444 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 07:10:45.444 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:45.444 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 07:10:45.444 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 07:10:45.444 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:45.454 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:10:45.454 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 07:10:45.454 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:10:45.464 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 07:10:45.664 -07 000000447 INF: FPGA: Recv YMVTILE
17-03-18 07:10:45.664 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-18 07:10:45.714 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:45.714 -07 000000590 INF: FPGA: Recv YRDPOS 131186
17-03-18 07:10:45.724 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:10:45.724 -07 000000444 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:45.724 -07 000000444 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 07:10:45.724 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.223 mm/sec
17-03-18 07:10:46.674 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:46.674 -07 000000447 INF: FPGA: Recv YRDPOS 131186
17-03-18 07:10:46.684 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:46.684 -07 000000444 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:46.714 -07 000000444 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:46.714 -07 000000444 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:10:46.714 -07 000000444 INF: Y Motor: Moved to 64.0557 after 1462 ms (table move)
17-03-18 07:10:46.714 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131962 mm (DAC = 28827)
17-03-18 07:10:46.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:46.714 -07 000000447 INF: FPGA: Recv ZSGSRD 29831
17-03-18 07:10:46.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:10:46.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:46.724 -07 000000590 INF: FPGA: Recv ZSGSRD 29834
17-03-18 07:10:46.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:46.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:46.734 -07 000000487 INF: FPGA: Recv ZSGSRD 29836
17-03-18 07:10:46.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:46.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:46.744 -07 000000455 INF: FPGA: Recv ZSGSRD 29829
17-03-18 07:10:46.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:46.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:46.754 -07 000000012 INF: FPGA: Recv ZSGSRD 29826
17-03-18 07:10:46.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:46.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:46.764 -07 000000480 INF: FPGA: Recv ZSGSRD 29833
17-03-18 07:10:46.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:46.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:46.774 -07 000000437 INF: FPGA: Recv ZSGSRD 29831
17-03-18 07:10:46.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:46.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:46.784 -07 000000611 INF: FPGA: Recv ZSGSRD 29828
17-03-18 07:10:46.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:46.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:46.794 -07 000000447 INF: FPGA: Recv ZSGSRD 29830
17-03-18 07:10:46.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:46.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:46.804 -07 000000579 INF: FPGA: Recv ZSGSRD 29831
17-03-18 07:10:46.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:46.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:46.814 -07 000000437 INF: FPGA: Recv ZPIEZORD 25387
17-03-18 07:10:46.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:46.824 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -9.8 V.
17-03-18 07:10:46.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29831 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29831 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29826 (-131.1 uncal um), Max = 29836 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:10:46.824 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29831, posNoise = 5, negNoise = 5
17-03-18 07:10:46.824 -07 000000610 INF: Z Motor: After move to -0.131962, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:46.824 -07 000000610 INF: Z Motor: Settle wait time = 1465 ms, measure time = 104 ms (allowed 150 ms), total time = 1569 ms
17-03-18 07:10:46.824 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:46.874 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 07:10:46.874 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:46.874 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.131964024412006. ----------
17-03-18 07:10:46.874 -07 000000610 INF: Cycle	158	Tile	6	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:46.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28650, sync = True, waitForSettling = True)
17-03-18 07:10:46.874 -07 000000610 INF: Z Motor: Moving to -0.131151 mm, started at -0.131964 mm, distance = 0.81 um
17-03-18 07:10:46.874 -07 000000610 INF: FPGA: Xmit ZDACW 28650\n [Z Motor]
17-03-18 07:10:46.884 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:10:46.884 -07 000000610 INF: FPGA: 'ZDACW 28650' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 07:10:46.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:46.884 -07 000000608 INF: FPGA: Recv ZDACR 28650
17-03-18 07:10:46.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:10:46.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:46.934 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:10:46.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:10:47.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:47.044 -07 000000579 INF: FPGA: Recv ZSGSRD 29709
17-03-18 07:10:47.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:47.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:47.054 -07 000000487 INF: FPGA: Recv ZSGSRD 29712
17-03-18 07:10:47.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:47.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:47.064 -07 000000608 INF: FPGA: Recv ZSGSRD 29708
17-03-18 07:10:47.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:47.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:47.074 -07 000000474 INF: FPGA: Recv ZSGSRD 29702
17-03-18 07:10:47.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:47.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:47.084 -07 000000512 INF: FPGA: Recv ZSGSRD 29705
17-03-18 07:10:47.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:47.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:47.094 -07 000000480 INF: FPGA: Recv ZSGSRD 29704
17-03-18 07:10:47.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:47.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:47.104 -07 000000501 INF: FPGA: Recv ZSGSRD 29701
17-03-18 07:10:47.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:47.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:47.114 -07 000000474 INF: FPGA: Recv ZSGSRD 29706
17-03-18 07:10:47.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:47.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:47.124 -07 000000579 INF: FPGA: Recv ZSGSRD 29706
17-03-18 07:10:47.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:47.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:47.134 -07 000000480 INF: FPGA: Recv ZSGSRD 29708
17-03-18 07:10:47.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:47.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:47.144 -07 000000447 INF: FPGA: Recv ZPIEZORD 25209
17-03-18 07:10:47.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:47.154 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.9 V.
17-03-18 07:10:47.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29706 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29706 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29701 (-130.3 uncal um), Max = 29712 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:10:47.154 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29706, posNoise = 6, negNoise = 5
17-03-18 07:10:47.154 -07 000000610 INF: Z Motor: After move to -0.131151, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:47.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:10:47.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:47.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:47.154 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:47.154 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:47.154 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:47.154 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:47.154 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:47.154 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 07:10:47.154 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:47.154 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:47.154 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 07:10:47.154 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:47.164 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:10:47.164 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:47.164 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:10:47.164 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:47.174 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 07:10:47.174 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 07:10:47.174 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 07:10:47.174 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 07:10:47.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28827 150\n [Camera]
17-03-18 07:10:47.374 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:47.704 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.981281,
17-03-18 07:10:47.854 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:47.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:47.854 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:47.854 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:47.854 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 07:10:47.854 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:47.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:47.854 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:47.854 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:47.854 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 07:10:48.044 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28827 861
17-03-18 07:10:48.204 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1012
17-03-18 07:10:48.234 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:10:48.234 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 07:10:48.234 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:48.234 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:48.234 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:10:48.244 -07 000000447 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 07:10:48.244 -07 000000447 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 07:10:48.244 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:48.244 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:48.254 -07 000000447 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 07:10:48.424 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:48.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:48.424 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:48.424 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:48.424 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 07:10:48.424 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:48.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:48.424 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:48.424 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:48.424 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 07:10:48.614 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:10:48.614 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:48.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28827 150' command took 2 ms to send, 1437 ms to get response, and 1443 ms overall
17-03-18 07:10:48.614 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.131801
17-03-18 07:10:48.624 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13180 mm
17-03-18 07:10:48.624 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:48.624 -07 000000487 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 07:10:48.624 -07 000000487 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-18 07:10:48.624 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:48.624 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 28792, sync = True, waitForSettling = False)
17-03-18 07:10:48.624 -07 000000444 INF: Z Motor: Moving to -0.131801 mm, started at -0.131161 mm, distance = -0.64 um
17-03-18 07:10:48.624 -07 000000512 INF: FPGA: Recv YRDPOS 131186
17-03-18 07:10:48.634 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:10:48.634 -07 000000487 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:48.634 -07 000000487 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:48.634 -07 000000487 INF: Y Motor: Moving 1339 steps-14
17-03-18 07:10:48.634 -07 000000444 INF: FPGA: Xmit ZDACW 28792\n [Z Motor]
17-03-18 07:10:48.634 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 07:10:48.644 -07 000000444 INF: FPGA: 'ZDACW 28792' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 07:10:48.644 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:48.644 -07 000000590 INF: FPGA: Recv ZDACR 28792
17-03-18 07:10:48.654 -07 000000487 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:48.654 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:48.654 -07 000000444 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 07:10:48.814 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 07:10:48.814 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 07:10:48.814 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:48.814 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 07:10:48.814 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 07:10:48.814 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:48.814 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:48.814 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:48.814 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 07:10:48.824 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 07:10:49.024 -07 000000437 INF: FPGA: Recv YMVTILE
17-03-18 07:10:49.024 -07 000000487 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:10:49.084 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:49.084 -07 000000501 INF: FPGA: Recv YRDPOS 132869
17-03-18 07:10:49.094 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:10:49.094 -07 000000487 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:49.094 -07 000000487 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 07:10:49.094 -07 000000487 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-18 07:10:50.044 -07 000000487 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:50.044 -07 000000512 INF: FPGA: Recv YRDPOS 132869
17-03-18 07:10:50.054 -07 000000487 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:50.054 -07 000000487 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:50.084 -07 000000487 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:50.084 -07 000000487 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:10:50.084 -07 000000487 INF: Y Motor: Moved to 64.8774 after 1459 ms (table move)
17-03-18 07:10:50.084 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131801 mm (DAC = 28792)
17-03-18 07:10:50.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.094 -07 000000012 INF: FPGA: Recv ZSGSRD 29803
17-03-18 07:10:50.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:10:50.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.094 -07 000000455 INF: FPGA: Recv ZSGSRD 29807
17-03-18 07:10:50.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.104 -07 000000480 INF: FPGA: Recv ZSGSRD 29807
17-03-18 07:10:50.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.114 -07 000000512 INF: FPGA: Recv ZSGSRD 29807
17-03-18 07:10:50.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.124 -07 000000437 INF: FPGA: Recv ZSGSRD 29803
17-03-18 07:10:50.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.134 -07 000000455 INF: FPGA: Recv ZSGSRD 29800
17-03-18 07:10:50.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.144 -07 000000501 INF: FPGA: Recv ZSGSRD 29807
17-03-18 07:10:50.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.154 -07 000000608 INF: FPGA: Recv ZSGSRD 29804
17-03-18 07:10:50.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.164 -07 000000611 INF: FPGA: Recv ZSGSRD 29806
17-03-18 07:10:50.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.174 -07 000000480 INF: FPGA: Recv ZSGSRD 29812
17-03-18 07:10:50.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.184 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:50.184 -07 000000447 INF: FPGA: Recv ZPIEZORD 25357
17-03-18 07:10:50.194 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:50.194 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.8 V.
17-03-18 07:10:50.194 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29806 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29806 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29800 (-131.0 uncal um), Max = 29812 (-131.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:10:50.194 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29806, posNoise = 6, negNoise = 6
17-03-18 07:10:50.194 -07 000000610 INF: Z Motor: After move to -0.131801, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:50.194 -07 000000610 INF: Z Motor: Settle wait time = 1461 ms, measure time = 104 ms (allowed 150 ms), total time = 1565 ms
17-03-18 07:10:50.194 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:50.244 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 07:10:50.244 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:50.244 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.131803419108462. ----------
17-03-18 07:10:50.244 -07 000000610 INF: Cycle	158	Tile	7	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:50.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28615, sync = True, waitForSettling = True)
17-03-18 07:10:50.244 -07 000000610 INF: Z Motor: Moving to -0.130991 mm, started at -0.131803 mm, distance = 0.81 um
17-03-18 07:10:50.244 -07 000000610 INF: FPGA: Xmit ZDACW 28615\n [Z Motor]
17-03-18 07:10:50.244 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:10:50.254 -07 000000610 INF: FPGA: 'ZDACW 28615' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:10:50.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:50.254 -07 000000487 INF: FPGA: Recv ZDACR 28615
17-03-18 07:10:50.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:50.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.414 -07 000000480 INF: FPGA: Recv ZSGSRD 29680
17-03-18 07:10:50.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:50.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.424 -07 000000611 INF: FPGA: Recv ZSGSRD 29682
17-03-18 07:10:50.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.434 -07 000000501 INF: FPGA: Recv ZSGSRD 29685
17-03-18 07:10:50.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.444 -07 000000512 INF: FPGA: Recv ZSGSRD 29676
17-03-18 07:10:50.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.454 -07 000000590 INF: FPGA: Recv ZSGSRD 29675
17-03-18 07:10:50.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.464 -07 000000012 INF: FPGA: Recv ZSGSRD 29672
17-03-18 07:10:50.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.474 -07 000000501 INF: FPGA: Recv ZSGSRD 29679
17-03-18 07:10:50.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.484 -07 000000444 INF: FPGA: Recv ZSGSRD 29673
17-03-18 07:10:50.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.494 -07 000000480 INF: FPGA: Recv ZSGSRD 29677
17-03-18 07:10:50.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:50.504 -07 000000447 INF: FPGA: Recv ZSGSRD 29678
17-03-18 07:10:50.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:50.514 -07 000000474 INF: FPGA: Recv ZPIEZORD 25226
17-03-18 07:10:50.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:50.524 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.8 V.
17-03-18 07:10:50.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29678 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29678 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29672 (-130.2 uncal um), Max = 29685 (-130.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:10:50.524 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29678, posNoise = 7, negNoise = 6
17-03-18 07:10:50.524 -07 000000610 INF: Z Motor: After move to -0.130991, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:50.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:10:50.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:50.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:50.524 -07 000000437 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:50.524 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:50.524 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:50.524 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:50.524 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:50.524 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:50.524 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 07:10:50.524 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:50.524 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 07:10:50.524 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:50.534 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:10:50.534 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:50.534 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:10:50.534 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:50.544 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 07:10:50.544 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 07:10:50.544 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 07:10:50.544 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:10:50.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28792 150\n [Camera]
17-03-18 07:10:50.744 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:51.224 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:51.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:51.224 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:51.224 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:51.224 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-18 07:10:51.224 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:51.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:51.224 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:51.224 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:51.224 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-18 07:10:51.414 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28792 861
17-03-18 07:10:51.564 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:10:51.604 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 07:10:51.604 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 07:10:51.604 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:51.604 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 07:10:51.604 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:10:51.604 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:51.614 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:51.614 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:51.614 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:10:51.614 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 07:10:51.794 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:51.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:51.794 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:51.794 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:51.794 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-18 07:10:51.794 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:51.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:51.804 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:51.804 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:51.804 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-18 07:10:51.934 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:10:51.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:10:51.984 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:10:51.984 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:51.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28792 150' command took 2 ms to send, 1427 ms to get response, and 1439 ms overall
17-03-18 07:10:51.984 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.131688
17-03-18 07:10:51.994 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13169 mm
17-03-18 07:10:51.994 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:51.994 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 07:10:51.994 -07 000000541 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-18 07:10:51.994 -07 000000474 INF: Z Motor: Entering MoveAbsStepped (DAC = 28767, sync = True, waitForSettling = False)
17-03-18 07:10:51.994 -07 000000474 INF: Z Motor: Moving to -0.131687 mm, started at -0.130981 mm, distance = -0.71 um
17-03-18 07:10:51.994 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:51.994 -07 000000444 INF: FPGA: Recv YRDPOS 132869
17-03-18 07:10:52.004 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:10:52.004 -07 000000541 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:52.004 -07 000000541 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:52.004 -07 000000474 INF: FPGA: Xmit ZDACW 28767\n [Z Motor]
17-03-18 07:10:52.004 -07 000000541 INF: Y Motor: Moving 1352 steps-31
17-03-18 07:10:52.004 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 07:10:52.014 -07 000000474 INF: FPGA: 'ZDACW 28767' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 07:10:52.014 -07 000000474 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:52.014 -07 000000012 INF: FPGA: Recv ZDACR 28767
17-03-18 07:10:52.024 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:52.024 -07 000000474 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:52.024 -07 000000474 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 07:10:52.184 -07 000000487 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 07:10:52.184 -07 000000487 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 07:10:52.184 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:52.184 -07 000000447 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 07:10:52.184 -07 000000447 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 07:10:52.184 -07 000000447 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:52.194 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 07:10:52.194 -07 000000447 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 07:10:52.194 -07 000000447 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 07:10:52.194 -07 000000487 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 07:10:52.394 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 07:10:52.394 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 07:10:52.454 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:52.454 -07 000000480 INF: FPGA: Recv YRDPOS 134580
17-03-18 07:10:52.464 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:10:52.464 -07 000000541 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:52.464 -07 000000541 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 07:10:52.464 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-18 07:10:53.064 -07 000000611 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.978563,
17-03-18 07:10:53.414 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:53.414 -07 000000590 INF: FPGA: Recv YRDPOS 134580
17-03-18 07:10:53.424 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:53.424 -07 000000541 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:53.464 -07 000000541 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:53.464 -07 000000541 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:10:53.464 -07 000000541 INF: Y Motor: Moved to 65.7129 after 1468 ms (table move)
17-03-18 07:10:53.464 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131687 mm (DAC = 28767)
17-03-18 07:10:53.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.464 -07 000000444 INF: FPGA: Recv ZSGSRD 29786
17-03-18 07:10:53.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:10:53.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.474 -07 000000447 INF: FPGA: Recv ZSGSRD 29790
17-03-18 07:10:53.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.484 -07 000000501 INF: FPGA: Recv ZSGSRD 29792
17-03-18 07:10:53.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.494 -07 000000480 INF: FPGA: Recv ZSGSRD 29781
17-03-18 07:10:53.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.504 -07 000000444 INF: FPGA: Recv ZSGSRD 29783
17-03-18 07:10:53.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.514 -07 000000437 INF: FPGA: Recv ZSGSRD 29794
17-03-18 07:10:53.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.524 -07 000000455 INF: FPGA: Recv ZSGSRD 29791
17-03-18 07:10:53.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.534 -07 000000487 INF: FPGA: Recv ZSGSRD 29788
17-03-18 07:10:53.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.544 -07 000000611 INF: FPGA: Recv ZSGSRD 29792
17-03-18 07:10:53.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.564 -07 000000487 INF: FPGA: Recv ZSGSRD 29789
17-03-18 07:10:53.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:10:53.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:53.574 -07 000000480 INF: FPGA: Recv ZPIEZORD 25358
17-03-18 07:10:53.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.584 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.7 V.
17-03-18 07:10:53.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29789 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29790 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29781 (-130.9 uncal um), Max = 29794 (-130.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:10:53.584 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29789, posNoise = 5, negNoise = 8
17-03-18 07:10:53.584 -07 000000610 INF: Z Motor: After move to -0.131687, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:53.584 -07 000000610 INF: Z Motor: Settle wait time = 1470 ms, measure time = 117 ms (allowed 150 ms), total time = 1587 ms
17-03-18 07:10:53.584 -07 000000610 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:53.624 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 07:10:53.624 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:53.624 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.131694207502052. ----------
17-03-18 07:10:53.624 -07 000000610 INF: Cycle	158	Tile	8	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:53.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28591, sync = True, waitForSettling = True)
17-03-18 07:10:53.624 -07 000000610 INF: Z Motor: Moving to -0.130881 mm, started at -0.131694 mm, distance = 0.81 um
17-03-18 07:10:53.624 -07 000000610 INF: FPGA: Xmit ZDACW 28591\n [Z Motor]
17-03-18 07:10:53.624 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 07:10:53.634 -07 000000610 INF: FPGA: 'ZDACW 28591' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:10:53.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:53.634 -07 000000444 INF: FPGA: Recv ZDACR 28591
17-03-18 07:10:53.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:53.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.794 -07 000000579 INF: FPGA: Recv ZSGSRD 29664
17-03-18 07:10:53.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:53.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.804 -07 000000480 INF: FPGA: Recv ZSGSRD 29662
17-03-18 07:10:53.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.814 -07 000000437 INF: FPGA: Recv ZSGSRD 29660
17-03-18 07:10:53.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.824 -07 000000447 INF: FPGA: Recv ZSGSRD 29664
17-03-18 07:10:53.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.834 -07 000000474 INF: FPGA: Recv ZSGSRD 29663
17-03-18 07:10:53.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.844 -07 000000487 INF: FPGA: Recv ZSGSRD 29664
17-03-18 07:10:53.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.854 -07 000000590 INF: FPGA: Recv ZSGSRD 29663
17-03-18 07:10:53.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.874 -07 000000455 INF: FPGA: Recv ZSGSRD 29664
17-03-18 07:10:53.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:10:53.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.884 -07 000000579 INF: FPGA: Recv ZSGSRD 29665
17-03-18 07:10:53.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:53.904 -07 000000576 INF: FPGA: Recv ZSGSRD 29660
17-03-18 07:10:53.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:10:53.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:53.914 -07 000000437 INF: FPGA: Recv ZPIEZORD 25211
17-03-18 07:10:53.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:53.924 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.8 V.
17-03-18 07:10:53.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29663 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29664 (-130.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29660 (-130.1 uncal um), Max = 29665 (-130.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 07:10:53.924 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29663, posNoise = 2, negNoise = 3
17-03-18 07:10:53.924 -07 000000610 INF: Z Motor: After move to -0.130881, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:53.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 294 ms)
17-03-18 07:10:53.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:53.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:53.924 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:53.924 -07 000000437 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:53.924 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:53.924 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:53.924 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:53.924 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:53.924 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:53.924 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:53.924 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:10:53.924 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:53.934 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:10:53.934 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:53.934 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:10:53.934 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:53.944 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 07:10:53.944 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 07:10:53.944 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 07:10:53.944 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 07:10:53.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28767 150\n [Camera]
17-03-18 07:10:54.144 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:54.624 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:54.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:54.624 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:54.624 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:54.624 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) start.
17-03-18 07:10:54.624 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:54.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:54.624 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:54.794 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:54.794 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) start.
17-03-18 07:10:54.814 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28767 861
17-03-18 07:10:54.964 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:10:55.034 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 07:10:55.034 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 07:10:55.034 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:55.034 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:55.034 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 07:10:55.164 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 07:10:55.164 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 07:10:55.164 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:55.174 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:55.174 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 547 ms.
17-03-18 07:10:55.194 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:55.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:55.194 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:55.204 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:55.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:55.204 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:55.204 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:55.204 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-18 07:10:55.214 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:55.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-18 07:10:55.384 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-18 07:10:55.394 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:55.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28767 150' command took 2 ms to send, 1429 ms to get response, and 1440 ms overall
17-03-18 07:10:55.394 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 07:10:55.394 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.13088475677219. ------
17-03-18 07:10:55.394 -07 000000487 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13717 mm
17-03-18 07:10:55.394 -07 000000487 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:55.394 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:10:55.394 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:10:55.394 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29966, sync = True, waitForSettling = False)
17-03-18 07:10:55.394 -07 000000608 INF: Z Motor: Moving to -0.137176 mm, started at -0.130885 mm, distance = -6.29 um
17-03-18 07:10:55.404 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 07:10:55.404 -07 000000444 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-18 07:10:55.404 -07 000000608 INF: FPGA: Xmit ZDACW 29966\n [Z Motor]
17-03-18 07:10:55.404 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:10:55.404 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 07:10:55.414 -07 000000608 INF: FPGA: 'ZDACW 29966' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:55.414 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:55.414 -07 000000480 INF: FPGA: Recv YRDPOS 134580
17-03-18 07:10:55.424 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:10:55.424 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:10:55.424 -07 000000444 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:55.424 -07 000000444 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:55.424 -07 000000444 INF: Y Motor: Moving 1344 steps-20
17-03-18 07:10:55.434 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:55.434 -07 000000430 INF: FPGA: Recv ZDACR 29966
17-03-18 07:10:55.444 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:55.444 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:10:55.444 -07 000000608 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 07:10:55.584 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 07:10:55.584 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 07:10:55.584 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:55.584 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 07:10:55.584 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 07:10:55.584 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:55.594 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:55.594 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 07:10:55.594 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:55.604 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 07:10:55.624 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:10:55.624 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 07:10:55.814 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 07:10:55.814 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 07:10:55.874 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:55.874 -07 000000437 INF: FPGA: Recv YRDPOS 136270
17-03-18 07:10:55.884 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:10:55.884 -07 000000444 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:55.884 -07 000000444 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 07:10:55.884 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 07:10:56.834 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:56.834 -07 000000501 INF: FPGA: Recv YRDPOS 136270
17-03-18 07:10:56.844 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:56.844 -07 000000444 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:56.874 -07 000000444 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:10:56.874 -07 000000444 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:10:56.874 -07 000000444 INF: Y Motor: Moved to 66.5381 after 1474 ms (table move)
17-03-18 07:10:56.874 -07 000000487 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137176 mm (DAC = 29966)
17-03-18 07:10:56.874 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:56.884 -07 000000611 INF: FPGA: Recv ZSGSRD 30648
17-03-18 07:10:56.884 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:10:56.884 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:56.884 -07 000000480 INF: FPGA: Recv ZSGSRD 30644
17-03-18 07:10:56.894 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:10:56.894 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:56.894 -07 000000447 INF: FPGA: Recv ZSGSRD 30635
17-03-18 07:10:56.904 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:56.904 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:56.904 -07 000000501 INF: FPGA: Recv ZSGSRD 30643
17-03-18 07:10:56.914 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:56.914 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:56.914 -07 000000012 INF: FPGA: Recv ZSGSRD 30638
17-03-18 07:10:56.924 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:56.924 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:56.924 -07 000000480 INF: FPGA: Recv ZSGSRD 30647
17-03-18 07:10:56.934 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:56.934 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:56.934 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:10:56.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:10:56.934 -07 000000541 INF: FPGA: Recv ZSGSRD 30647
17-03-18 07:10:56.944 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:56.944 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:56.944 -07 000000444 INF: FPGA: Recv ZSGSRD 30644
17-03-18 07:10:56.954 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:56.954 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:56.954 -07 000000455 INF: FPGA: Recv ZSGSRD 30649
17-03-18 07:10:56.964 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:56.964 -07 000000487 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:56.964 -07 000000474 INF: FPGA: Recv ZSGSRD 30639
17-03-18 07:10:56.974 -07 000000487 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:56.974 -07 000000487 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:56.974 -07 000000611 INF: FPGA: Recv ZPIEZORD 26465
17-03-18 07:10:56.984 -07 000000487 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:56.984 -07 000000487 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.573 V. Piezo Error = -9.2 V.
17-03-18 07:10:56.984 -07 000000487 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30643 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30644 (-136.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30635 (-136.3 uncal um), Max = 30649 (-136.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:10:56.984 -07 000000487 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30643, posNoise = 6, negNoise = 8
17-03-18 07:10:56.984 -07 000000487 INF: Z Motor: After move to -0.137176, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:56.984 -07 000000487 INF: Z Motor: Settle wait time = 1478 ms, measure time = 102 ms (allowed 150 ms), total time = 1580 ms
17-03-18 07:10:56.984 -07 000000487 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 07:10:57.034 -07 000000487 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 07:10:57.034 -07 000000487 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:10:57.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:57.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:57.034 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:57.034 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:57.034 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:10:57.034 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:57.034 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:57.034 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:10:57.044 -07 000000437 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:10:57.044 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:10:57.054 -07 000000437 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 07:10:57.054 -07 000000437 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 07:10:57.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:10:57.094 -07 000000437 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:10:57.394 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:10:57.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:10:57.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:10:57.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) start.
17-03-18 07:10:57.434 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:10:57.434 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 07:10:57.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 07:10:57.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 07:10:57.524 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:57.524 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:10:57.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 07:10:57.634 -07 000000474 INF: Autofocus start
17-03-18 07:10:57.634 -07 000000474 INF: MeasureProfile start
17-03-18 07:10:57.634 -07 000000487 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:10:57.634 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:10:57.644 -07 000000487 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:10:57.644 -07 000000487 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:10:57.644 -07 000000474 INF: MeasureProfile done
17-03-18 07:10:57.644 -07 000000474 INF: X=0  Z correction [um]=-0.02394831
17-03-18 07:10:57.644 -07 000000474 INF: Autofocus finished
17-03-18 07:10:57.844 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:10:57.844 -07 000000487 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 07:10:57.844 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.137180484671116. ----------
17-03-18 07:10:57.854 -07 000000610 INF: Cycle	158	Tile	9	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:10:57.854 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28473, sync = True, waitForSettling = True)
17-03-18 07:10:57.854 -07 000000610 INF: Z Motor: Moving to -0.130341 mm, started at -0.137180 mm, distance = 6.84 um
17-03-18 07:10:57.854 -07 000000610 INF: FPGA: Xmit ZDACW 28473\n [Z Motor]
17-03-18 07:10:57.854 -07 000000541 INF: FPGA: Recv ZDACW
17-03-18 07:10:57.864 -07 000000610 INF: FPGA: 'ZDACW 28473' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:10:57.864 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:57.864 -07 000000437 INF: FPGA: Recv ZDACR 28473
17-03-18 07:10:57.874 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:57.874 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:10:58.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:58.024 -07 000000626 INF: FPGA: Recv ZSGSRD 29582
17-03-18 07:10:58.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:10:58.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:58.034 -07 000000480 INF: FPGA: Recv ZSGSRD 29588
17-03-18 07:10:58.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:58.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:58.044 -07 000000012 INF: FPGA: Recv ZSGSRD 29585
17-03-18 07:10:58.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:58.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:58.054 -07 000000579 INF: FPGA: Recv ZSGSRD 29578
17-03-18 07:10:58.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:58.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:58.064 -07 000000611 INF: FPGA: Recv ZSGSRD 29579
17-03-18 07:10:58.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:58.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:58.074 -07 000000590 INF: FPGA: Recv ZSGSRD 29571
17-03-18 07:10:58.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:58.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:58.084 -07 000000512 INF: FPGA: Recv ZSGSRD 29583
17-03-18 07:10:58.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:58.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:58.094 -07 000000501 INF: FPGA: Recv ZSGSRD 29570
17-03-18 07:10:58.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:58.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:58.114 -07 000000626 INF: FPGA: Recv ZSGSRD 29579
17-03-18 07:10:58.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:10:58.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:10:58.124 -07 000000512 INF: FPGA: Recv ZSGSRD 29572
17-03-18 07:10:58.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:58.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:10:58.134 -07 000000501 INF: FPGA: Recv ZPIEZORD 25050
17-03-18 07:10:58.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:58.144 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.345 V. Piezo Error = -9.9 V.
17-03-18 07:10:58.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29579 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29579 (-129.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29570 (-129.5 uncal um), Max = 29588 (-129.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 07:10:58.144 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29579, posNoise = 9, negNoise = 9
17-03-18 07:10:58.144 -07 000000610 INF: Z Motor: After move to -0.130341, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:10:58.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 07:10:58.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:10:58.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:10:58.144 -07 000000487 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:10:58.144 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:10:58.144 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:10:58.144 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:10:58.144 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:10:58.144 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:10:58.144 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:10:58.144 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:10:58.144 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:10:58.144 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:10:58.154 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:10:58.154 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:10:58.154 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:10:58.154 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:10:58.164 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:10:58.164 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:10:58.164 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 07:10:58.164 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:10:58.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28650 150\n [Camera]
17-03-18 07:10:58.364 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:10:58.424 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.007176,
17-03-18 07:10:58.834 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:10:58.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:10:58.844 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:58.844 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:58.844 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) start.
17-03-18 07:10:58.844 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:10:58.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:10:58.844 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:58.974 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:58.974 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) start.
17-03-18 07:10:59.034 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28650 861
17-03-18 07:10:59.184 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:10:59.224 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1111624864, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 07:10:59.224 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:10:59.224 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:59.224 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:10:59.224 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:10:59.354 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 07:10:59.354 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 07:10:59.354 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:59.354 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:59.364 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-18 07:10:59.414 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:10:59.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:10:59.414 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:10:59.414 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:10:59.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:10:59.414 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:10:59.414 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 07:10:59.414 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:10:59.414 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:10:59.414 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:10:59.604 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:10:59.604 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:10:59.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28650 150' command took 2 ms to send, 1433 ms to get response, and 1440 ms overall
17-03-18 07:10:59.604 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131218
17-03-18 07:10:59.604 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13122 mm
17-03-18 07:10:59.604 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:10:59.604 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 28665, sync = True, waitForSettling = False)
17-03-18 07:10:59.614 -07 000000579 INF: Z Motor: Moving to -0.131220 mm, started at -0.130345 mm, distance = -0.87 um
17-03-18 07:10:59.614 -07 000000579 INF: FPGA: Xmit ZDACW 28665\n [Z Motor]
17-03-18 07:10:59.614 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 07:10:59.614 -07 000000012 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-18 07:10:59.614 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 07:10:59.624 -07 000000579 INF: FPGA: 'ZDACW 28665' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:10:59.624 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:10:59.624 -07 000000480 INF: FPGA: Recv YRDPOS 136270
17-03-18 07:10:59.634 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 07:10:59.634 -07 000000012 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:10:59.634 -07 000000012 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:10:59.634 -07 000000012 INF: Y Motor: Moving 1351 steps-30
17-03-18 07:10:59.634 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:10:59.634 -07 000000444 INF: FPGA: Recv ZDACR 28665
17-03-18 07:10:59.644 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:10:59.644 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:10:59.644 -07 000000579 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 07:10:59.794 -07 000000474 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 07:10:59.794 -07 000000474 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 07:10:59.794 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:59.794 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 07:10:59.794 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:10:59.794 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:10:59.804 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:59.804 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:10:59.804 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 07:10:59.804 -07 000000474 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 07:11:00.024 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 07:11:00.024 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 07:11:00.074 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:00.074 -07 000000430 INF: FPGA: Recv YRDPOS 137975
17-03-18 07:11:00.084 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:11:00.084 -07 000000012 INF: Y Motor: Encoder = 137975 = motor step 107793.0 = 67.3706 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:00.084 -07 000000012 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-18 07:11:00.084 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.845 mm, average velocity = 2.171 mm/sec
17-03-18 07:11:01.034 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:01.034 -07 000000430 INF: FPGA: Recv YRDPOS 137976
17-03-18 07:11:01.044 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.044 -07 000000012 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:01.074 -07 000000012 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:11:01.074 -07 000000012 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:11:01.074 -07 000000012 INF: Y Motor: Moved to 67.3711 after 1461 ms (table move)
17-03-18 07:11:01.074 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131220 mm (DAC = 28665)
17-03-18 07:11:01.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.074 -07 000000480 INF: FPGA: Recv ZSGSRD 29718
17-03-18 07:11:01.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:11:01.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.084 -07 000000487 INF: FPGA: Recv ZSGSRD 29709
17-03-18 07:11:01.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.094 -07 000000501 INF: FPGA: Recv ZSGSRD 29710
17-03-18 07:11:01.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.104 -07 000000474 INF: FPGA: Recv ZSGSRD 29722
17-03-18 07:11:01.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.114 -07 000000012 INF: FPGA: Recv ZSGSRD 29717
17-03-18 07:11:01.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.124 -07 000000541 INF: FPGA: Recv ZSGSRD 29718
17-03-18 07:11:01.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.134 -07 000000487 INF: FPGA: Recv ZSGSRD 29713
17-03-18 07:11:01.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.144 -07 000000430 INF: FPGA: Recv ZSGSRD 29721
17-03-18 07:11:01.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.154 -07 000000455 INF: FPGA: Recv ZSGSRD 29717
17-03-18 07:11:01.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.164 -07 000000576 INF: FPGA: Recv ZSGSRD 29708
17-03-18 07:11:01.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:01.174 -07 000000611 INF: FPGA: Recv ZPIEZORD 25269
17-03-18 07:11:01.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.184 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.8 V.
17-03-18 07:11:01.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29715 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29717 (-130.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29708 (-130.4 uncal um), Max = 29722 (-130.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:11:01.184 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29715, posNoise = 7, negNoise = 7
17-03-18 07:11:01.184 -07 000000610 INF: Z Motor: After move to -0.131220, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:01.184 -07 000000610 INF: Z Motor: Settle wait time = 1466 ms, measure time = 104 ms (allowed 150 ms), total time = 1570 ms
17-03-18 07:11:01.184 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 07:11:01.234 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 07:11:01.234 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:11:01.234 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.131218815803562. ----------
17-03-18 07:11:01.234 -07 000000610 INF: Cycle	158	Tile	10	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:11:01.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28488, sync = True, waitForSettling = True)
17-03-18 07:11:01.234 -07 000000610 INF: Z Motor: Moving to -0.130410 mm, started at -0.131219 mm, distance = 0.81 um
17-03-18 07:11:01.234 -07 000000610 INF: FPGA: Xmit ZDACW 28488\n [Z Motor]
17-03-18 07:11:01.234 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 07:11:01.244 -07 000000610 INF: FPGA: 'ZDACW 28488' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:11:01.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:01.244 -07 000000576 INF: FPGA: Recv ZDACR 28488
17-03-18 07:11:01.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:11:01.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.404 -07 000000608 INF: FPGA: Recv ZSGSRD 29588
17-03-18 07:11:01.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:01.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.414 -07 000000487 INF: FPGA: Recv ZSGSRD 29592
17-03-18 07:11:01.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.424 -07 000000447 INF: FPGA: Recv ZSGSRD 29591
17-03-18 07:11:01.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.434 -07 000000579 INF: FPGA: Recv ZSGSRD 29594
17-03-18 07:11:01.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.444 -07 000000012 INF: FPGA: Recv ZSGSRD 29588
17-03-18 07:11:01.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.454 -07 000000608 INF: FPGA: Recv ZSGSRD 29592
17-03-18 07:11:01.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.464 -07 000000512 INF: FPGA: Recv ZSGSRD 29585
17-03-18 07:11:01.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.474 -07 000000611 INF: FPGA: Recv ZSGSRD 29588
17-03-18 07:11:01.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.484 -07 000000579 INF: FPGA: Recv ZSGSRD 29589
17-03-18 07:11:01.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:01.494 -07 000000012 INF: FPGA: Recv ZSGSRD 29592
17-03-18 07:11:01.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:01.504 -07 000000480 INF: FPGA: Recv ZPIEZORD 25090
17-03-18 07:11:01.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:01.514 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.9 V.
17-03-18 07:11:01.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29590 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29590 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29585 (-129.6 uncal um), Max = 29594 (-129.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:11:01.514 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29590, posNoise = 4, negNoise = 5
17-03-18 07:11:01.514 -07 000000610 INF: Z Motor: After move to -0.130410, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:01.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:11:01.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:11:01.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:11:01.514 -07 000000611 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:11:01.514 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:11:01.514 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:11:01.514 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:11:01.514 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:11:01.514 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:11:01.514 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 07:11:01.514 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:11:01.514 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 07:11:01.514 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:11:01.524 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:11:01.524 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:11:01.524 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 07:11:01.524 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:11:01.534 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:11:01.534 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 07:11:01.534 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 07:11:01.534 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:11:01.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28665 150\n [Camera]
17-03-18 07:11:01.734 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:11:01.934 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:11:01.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:11:02.204 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:11:02.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:11:02.214 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:02.214 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:02.214 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 07:11:02.214 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:11:02.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:11:02.214 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:02.214 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:02.214 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 07:11:02.404 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28665 861
17-03-18 07:11:02.554 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:11:02.584 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 07:11:02.584 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 07:11:02.584 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:02.594 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:11:02.594 -07 000000611 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 07:11:02.594 -07 000000611 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 07:11:02.594 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:02.594 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:11:02.594 -07 000000611 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:11:02.594 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 07:11:02.784 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:11:02.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:11:02.784 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:02.784 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:02.784 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 07:11:02.784 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:11:02.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:11:02.784 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:02.784 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:02.784 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 07:11:02.974 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-18 07:11:02.974 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:11:02.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28665 150' command took 2 ms to send, 1432 ms to get response, and 1439 ms overall
17-03-18 07:11:02.974 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.130750
17-03-18 07:11:02.974 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13075 mm
17-03-18 07:11:02.974 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:11:02.974 -07 000000487 INF: Z Motor: Entering MoveAbsStepped (DAC = 28562, sync = True, waitForSettling = False)
17-03-18 07:11:02.974 -07 000000487 INF: Z Motor: Moving to -0.130748 mm, started at -0.130416 mm, distance = -0.33 um
17-03-18 07:11:02.974 -07 000000487 INF: FPGA: Xmit ZDACW 28562\n [Z Motor]
17-03-18 07:11:02.974 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 07:11:02.974 -07 000000501 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-18 07:11:02.974 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 07:11:02.984 -07 000000487 INF: FPGA: 'ZDACW 28562' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:11:02.984 -07 000000487 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:02.984 -07 000000512 INF: FPGA: Recv ZDACR 28562
17-03-18 07:11:02.994 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:02.994 -07 000000487 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:02.994 -07 000000487 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-18 07:11:02.994 -07 000000608 INF: FPGA: Recv YRDPOS 137976
17-03-18 07:11:03.004 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 07:11:03.004 -07 000000501 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:03.004 -07 000000501 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:11:03.004 -07 000000501 INF: Y Motor: Moving 1346 steps-25
17-03-18 07:11:03.004 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:11:03.164 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:11:03.164 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 07:11:03.164 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:03.164 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 07:11:03.164 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:11:03.164 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:03.174 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:03.174 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:03.174 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 07:11:03.174 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 07:11:03.434 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 07:11:03.434 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 427 ms to get response, and 436 ms overall
17-03-18 07:11:03.494 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:03.494 -07 000000444 INF: FPGA: Recv YRDPOS 139681
17-03-18 07:11:03.504 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:11:03.504 -07 000000501 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:03.504 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 07:11:03.504 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 437 ms, distance = 0.842 mm, average velocity = 1.926 mm/sec
17-03-18 07:11:03.784 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.033041,
17-03-18 07:11:04.454 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:04.454 -07 000000608 INF: FPGA: Recv YRDPOS 139682
17-03-18 07:11:04.464 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:04.464 -07 000000501 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:04.494 -07 000000501 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:11:04.494 -07 000000501 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:11:04.494 -07 000000501 INF: Y Motor: Moved to 68.2041 after 1515 ms (table move)
17-03-18 07:11:04.494 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130748 mm (DAC = 28562)
17-03-18 07:11:04.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.494 -07 000000012 INF: FPGA: Recv ZSGSRD 29646
17-03-18 07:11:04.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:11:04.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.504 -07 000000430 INF: FPGA: Recv ZSGSRD 29647
17-03-18 07:11:04.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:11:04.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.514 -07 000000608 INF: FPGA: Recv ZSGSRD 29638
17-03-18 07:11:04.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.524 -07 000000474 INF: FPGA: Recv ZSGSRD 29637
17-03-18 07:11:04.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.534 -07 000000447 INF: FPGA: Recv ZSGSRD 29642
17-03-18 07:11:04.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.544 -07 000000512 INF: FPGA: Recv ZSGSRD 29643
17-03-18 07:11:04.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.554 -07 000000430 INF: FPGA: Recv ZSGSRD 29646
17-03-18 07:11:04.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.564 -07 000000576 INF: FPGA: Recv ZSGSRD 29644
17-03-18 07:11:04.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.574 -07 000000626 INF: FPGA: Recv ZSGSRD 29647
17-03-18 07:11:04.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.584 -07 000000447 INF: FPGA: Recv ZSGSRD 29643
17-03-18 07:11:04.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:04.594 -07 000000487 INF: FPGA: Recv ZPIEZORD 25177
17-03-18 07:11:04.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.604 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.8 V.
17-03-18 07:11:04.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29643 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29644 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29637 (-129.9 uncal um), Max = 29647 (-130.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:11:04.604 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29643, posNoise = 4, negNoise = 6
17-03-18 07:11:04.604 -07 000000610 INF: Z Motor: After move to -0.130748, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:04.604 -07 000000610 INF: Z Motor: Settle wait time = 1519 ms, measure time = 104 ms (allowed 150 ms), total time = 1623 ms
17-03-18 07:11:04.604 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 07:11:04.654 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1674 ms
17-03-18 07:11:04.654 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:11:04.654 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.130756272529355. ----------
17-03-18 07:11:04.654 -07 000000610 INF: Cycle	158	Tile	11	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:11:04.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28386, sync = True, waitForSettling = True)
17-03-18 07:11:04.654 -07 000000610 INF: Z Motor: Moving to -0.129943 mm, started at -0.130756 mm, distance = 0.81 um
17-03-18 07:11:04.674 -07 000000610 INF: FPGA: Xmit ZDACW 28386\n [Z Motor]
17-03-18 07:11:04.674 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 07:11:04.684 -07 000000610 INF: FPGA: 'ZDACW 28386' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 07:11:04.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:04.684 -07 000000480 INF: FPGA: Recv ZDACR 28386
17-03-18 07:11:04.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:04.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:11:04.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.844 -07 000000487 INF: FPGA: Recv ZSGSRD 29507
17-03-18 07:11:04.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.854 -07 000000579 INF: FPGA: Recv ZSGSRD 29515
17-03-18 07:11:04.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.864 -07 000000512 INF: FPGA: Recv ZSGSRD 29522
17-03-18 07:11:04.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.874 -07 000000590 INF: FPGA: Recv ZSGSRD 29520
17-03-18 07:11:04.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.884 -07 000000608 INF: FPGA: Recv ZSGSRD 29515
17-03-18 07:11:04.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.894 -07 000000579 INF: FPGA: Recv ZSGSRD 29522
17-03-18 07:11:04.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.904 -07 000000455 INF: FPGA: Recv ZSGSRD 29519
17-03-18 07:11:04.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.914 -07 000000576 INF: FPGA: Recv ZSGSRD 29517
17-03-18 07:11:04.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.924 -07 000000590 INF: FPGA: Recv ZSGSRD 29517
17-03-18 07:11:04.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:04.934 -07 000000501 INF: FPGA: Recv ZSGSRD 29512
17-03-18 07:11:04.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:04.944 -07 000000012 INF: FPGA: Recv ZPIEZORD 24981
17-03-18 07:11:04.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:04.954 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.9 V.
17-03-18 07:11:04.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29517 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29517 (-129.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29507 (-129.1 uncal um), Max = 29522 (-129.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 07:11:04.954 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29517, posNoise = 5, negNoise = 10
17-03-18 07:11:04.954 -07 000000610 INF: Z Motor: After move to -0.129943, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:04.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 295 ms)
17-03-18 07:11:04.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:11:04.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:11:04.954 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:11:04.954 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:11:04.954 -07 000000447 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:11:04.954 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:11:04.954 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:11:04.954 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:11:04.954 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:11:04.954 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:11:04.954 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 07:11:04.954 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:11:04.964 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:11:04.964 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:11:04.964 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 07:11:04.964 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:11:04.974 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:11:04.974 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:11:04.974 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:11:04.974 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:11:04.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28562 150\n [Camera]
17-03-18 07:11:05.184 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:11:05.654 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:11:05.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:11:05.654 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:05.664 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:11:05.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:11:05.664 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:05.664 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:05.664 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 07:11:05.664 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:05.664 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) start.
17-03-18 07:11:05.854 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28562 861
17-03-18 07:11:06.004 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:11:06.034 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 07:11:06.034 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 07:11:06.034 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:06.034 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 07:11:06.034 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 07:11:06.034 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:06.044 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:11:06.044 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:11:06.044 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:11:06.054 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 07:11:06.234 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:11:06.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:11:06.234 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:06.234 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:06.234 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 07:11:06.234 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:11:06.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:11:06.234 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:06.234 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:06.234 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:11:06.424 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-18 07:11:06.424 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:11:06.424 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28562 150' command took 2 ms to send, 1432 ms to get response, and 1442 ms overall
17-03-18 07:11:06.424 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.130476
17-03-18 07:11:06.424 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13048 mm
17-03-18 07:11:06.424 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:11:06.424 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 07:11:06.424 -07 000000455 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-18 07:11:06.424 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:06.424 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 28502, sync = True, waitForSettling = False)
17-03-18 07:11:06.424 -07 000000430 INF: Z Motor: Moving to -0.130474 mm, started at -0.129947 mm, distance = -0.53 um
17-03-18 07:11:06.434 -07 000000430 INF: FPGA: Xmit ZDACW 28502\n [Z Motor]
17-03-18 07:11:06.434 -07 000000590 INF: FPGA: Recv YRDPOS 139682
17-03-18 07:11:06.434 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:11:06.434 -07 000000455 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:06.434 -07 000000455 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:11:06.434 -07 000000455 INF: Y Motor: Moving 1342 steps-18
17-03-18 07:11:06.434 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:11:06.444 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:11:06.444 -07 000000430 INF: FPGA: 'ZDACW 28502' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 07:11:06.454 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:06.454 -07 000000608 INF: FPGA: Recv ZDACR 28502
17-03-18 07:11:06.464 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:11:06.464 -07 000000430 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 07:11:06.614 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 07:11:06.614 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:11:06.614 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:06.614 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 07:11:06.614 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 07:11:06.614 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:06.614 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:06.614 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:11:06.614 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:11:06.624 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 07:11:06.814 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 07:11:06.814 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 07:11:06.874 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:06.874 -07 000000447 INF: FPGA: Recv YRDPOS 141365
17-03-18 07:11:06.884 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:11:06.884 -07 000000455 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:06.884 -07 000000455 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 07:11:06.884 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.172 mm/sec
17-03-18 07:11:06.934 -07 000000447 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:11:06.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:11:07.834 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:07.834 -07 000000512 INF: FPGA: Recv YRDPOS 141365
17-03-18 07:11:07.844 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:07.844 -07 000000455 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:07.874 -07 000000455 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:11:07.874 -07 000000455 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:11:07.874 -07 000000455 INF: Y Motor: Moved to 69.0259 after 1449 ms (table move)
17-03-18 07:11:07.884 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130474 mm (DAC = 28502)
17-03-18 07:11:07.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:07.884 -07 000000541 INF: FPGA: Recv ZSGSRD 29605
17-03-18 07:11:07.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:11:07.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:07.894 -07 000000437 INF: FPGA: Recv ZSGSRD 29602
17-03-18 07:11:07.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:07.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:07.904 -07 000000579 INF: FPGA: Recv ZSGSRD 29592
17-03-18 07:11:07.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:07.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:07.914 -07 000000012 INF: FPGA: Recv ZSGSRD 29598
17-03-18 07:11:07.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:07.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:07.924 -07 000000626 INF: FPGA: Recv ZSGSRD 29599
17-03-18 07:11:07.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:07.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:07.934 -07 000000590 INF: FPGA: Recv ZSGSRD 29605
17-03-18 07:11:07.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:07.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:07.944 -07 000000487 INF: FPGA: Recv ZSGSRD 29605
17-03-18 07:11:07.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:07.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:07.954 -07 000000579 INF: FPGA: Recv ZSGSRD 29600
17-03-18 07:11:07.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:07.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:07.964 -07 000000012 INF: FPGA: Recv ZSGSRD 29600
17-03-18 07:11:07.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:07.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:07.974 -07 000000512 INF: FPGA: Recv ZSGSRD 29605
17-03-18 07:11:07.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:07.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:07.984 -07 000000590 INF: FPGA: Recv ZPIEZORD 25142
17-03-18 07:11:07.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:07.994 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -9.8 V.
17-03-18 07:11:07.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29601 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29601 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29592 (-129.6 uncal um), Max = 29605 (-129.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 07:11:07.994 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29601, posNoise = 4, negNoise = 9
17-03-18 07:11:07.994 -07 000000610 INF: Z Motor: After move to -0.130474, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:07.994 -07 000000610 INF: Z Motor: Settle wait time = 1452 ms, measure time = 111 ms (allowed 150 ms), total time = 1563 ms
17-03-18 07:11:07.994 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 07:11:08.034 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 07:11:08.034 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:11:08.034 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.130486455619401. ----------
17-03-18 07:11:08.034 -07 000000610 INF: Cycle	158	Tile	12	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:11:08.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28326, sync = True, waitForSettling = True)
17-03-18 07:11:08.034 -07 000000610 INF: Z Motor: Moving to -0.129668 mm, started at -0.130486 mm, distance = 0.82 um
17-03-18 07:11:08.034 -07 000000610 INF: FPGA: Xmit ZDACW 28326\n [Z Motor]
17-03-18 07:11:08.034 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:11:08.044 -07 000000610 INF: FPGA: 'ZDACW 28326' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:11:08.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:08.044 -07 000000512 INF: FPGA: Recv ZDACR 28326
17-03-18 07:11:08.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:08.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:11:08.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:08.204 -07 000000579 INF: FPGA: Recv ZSGSRD 29477
17-03-18 07:11:08.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:08.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:08.214 -07 000000474 INF: FPGA: Recv ZSGSRD 29475
17-03-18 07:11:08.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:08.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:08.224 -07 000000447 INF: FPGA: Recv ZSGSRD 29476
17-03-18 07:11:08.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:08.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:08.234 -07 000000576 INF: FPGA: Recv ZSGSRD 29471
17-03-18 07:11:08.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:08.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:08.244 -07 000000512 INF: FPGA: Recv ZSGSRD 29473
17-03-18 07:11:08.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:08.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:08.254 -07 000000611 INF: FPGA: Recv ZSGSRD 29480
17-03-18 07:11:08.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:08.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:08.264 -07 000000474 INF: FPGA: Recv ZSGSRD 29478
17-03-18 07:11:08.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:08.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:08.274 -07 000000430 INF: FPGA: Recv ZSGSRD 29477
17-03-18 07:11:08.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:08.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:08.284 -07 000000437 INF: FPGA: Recv ZSGSRD 29469
17-03-18 07:11:08.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:08.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:08.294 -07 000000444 INF: FPGA: Recv ZSGSRD 29477
17-03-18 07:11:08.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:08.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:08.304 -07 000000501 INF: FPGA: Recv ZPIEZORD 24987
17-03-18 07:11:08.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:08.314 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -9.8 V.
17-03-18 07:11:08.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29475 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29476 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29469 (-128.9 uncal um), Max = 29480 (-128.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:11:08.314 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29475, posNoise = 5, negNoise = 6
17-03-18 07:11:08.314 -07 000000610 INF: Z Motor: After move to -0.129668, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:08.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:11:08.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:11:08.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:11:08.314 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:11:08.314 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:11:08.314 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:11:08.314 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:11:08.314 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:11:08.314 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:11:08.314 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:11:08.314 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:11:08.314 -07 000000437 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 07:11:08.314 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:11:08.324 -07 000000447 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:11:08.324 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:11:08.324 -07 000000437 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:11:08.324 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:11:08.334 -07 000000447 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 07:11:08.334 -07 000000447 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 07:11:08.334 -07 000000437 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 07:11:08.334 -07 000000437 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 07:11:08.334 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28502 150\n [Camera]
17-03-18 07:11:08.534 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:11:09.014 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:11:09.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:11:09.014 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:09.014 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:09.014 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 07:11:09.014 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:11:09.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:11:09.014 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:09.134 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:09.134 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) start.
17-03-18 07:11:09.144 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.012614,
17-03-18 07:11:09.204 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28502 861
17-03-18 07:11:09.354 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:11:09.394 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 07:11:09.394 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 07:11:09.394 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:09.394 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:11:09.394 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 07:11:09.504 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 07:11:09.504 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 07:11:09.504 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:09.514 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:11:09.514 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-18 07:11:09.584 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:11:09.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:11:09.584 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:09.584 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:11:09.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:11:09.594 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:09.594 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:09.594 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 07:11:09.594 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:09.594 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 07:11:09.774 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:11:09.774 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:11:09.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28502 150' command took 2 ms to send, 1436 ms to get response, and 1439 ms overall
17-03-18 07:11:09.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 07:11:09.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.129677004889539. ------
17-03-18 07:11:09.784 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13614 mm
17-03-18 07:11:09.784 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:11:09.784 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:11:09.784 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29739, sync = True, waitForSettling = False)
17-03-18 07:11:09.784 -07 000000608 INF: Z Motor: Moving to -0.136136 mm, started at -0.129677 mm, distance = -6.46 um
17-03-18 07:11:09.784 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 07:11:09.784 -07 000000455 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-18 07:11:09.784 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:11:09.794 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:11:09.794 -07 000000608 INF: FPGA: Xmit ZDACW 29739\n [Z Motor]
17-03-18 07:11:09.794 -07 000000437 INF: FPGA: Recv ZDACW
17-03-18 07:11:09.804 -07 000000608 INF: FPGA: 'ZDACW 29739' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:09.804 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:09.804 -07 000000444 INF: FPGA: Recv ZDACR 29739
17-03-18 07:11:09.814 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:09.814 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:09.814 -07 000000608 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 07:11:09.814 -07 000000444 INF: FPGA: Recv YRDPOS 141365
17-03-18 07:11:09.824 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:11:09.824 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 07:11:09.824 -07 000000455 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:09.824 -07 000000455 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:11:09.824 -07 000000455 INF: Y Motor: Moving 1355 steps-34
17-03-18 07:11:09.834 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:11:09.974 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:11:09.974 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:11:09.974 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:09.974 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 07:11:09.974 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 07:11:09.974 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:09.974 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:09.974 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 07:11:09.984 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:09.984 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 07:11:10.024 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:11:10.024 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 235 ms overall
17-03-18 07:11:10.204 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 07:11:10.204 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 07:11:10.264 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:10.264 -07 000000512 INF: FPGA: Recv YRDPOS 143077
17-03-18 07:11:10.274 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:11:10.274 -07 000000455 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:10.274 -07 000000455 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 07:11:10.274 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.847 mm, average velocity = 2.188 mm/sec
17-03-18 07:11:11.224 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:11.224 -07 000000444 INF: FPGA: Recv YRDPOS 143078
17-03-18 07:11:11.234 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:11.234 -07 000000455 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:11.264 -07 000000455 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:11:11.264 -07 000000455 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:11:11.264 -07 000000455 INF: Y Motor: Moved to 69.8623 after 1474 ms (table move)
17-03-18 07:11:11.264 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136136 mm (DAC = 29739)
17-03-18 07:11:11.264 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:11.264 -07 000000579 INF: FPGA: Recv ZSGSRD 30481
17-03-18 07:11:11.274 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:11:11.274 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:11.274 -07 000000501 INF: FPGA: Recv ZSGSRD 30481
17-03-18 07:11:11.284 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:11:11.284 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:11.284 -07 000000474 INF: FPGA: Recv ZSGSRD 30479
17-03-18 07:11:11.294 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:11.294 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:11.294 -07 000000626 INF: FPGA: Recv ZSGSRD 30475
17-03-18 07:11:11.304 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:11.304 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:11.304 -07 000000447 INF: FPGA: Recv ZSGSRD 30478
17-03-18 07:11:11.314 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:11.314 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:11.314 -07 000000501 INF: FPGA: Recv ZSGSRD 30483
17-03-18 07:11:11.324 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:11.324 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:11.324 -07 000000541 INF: FPGA: Recv ZSGSRD 30480
17-03-18 07:11:11.334 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:11.334 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:11.334 -07 000000512 INF: FPGA: Recv ZSGSRD 30481
17-03-18 07:11:11.344 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:11.344 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:11.344 -07 000000447 INF: FPGA: Recv ZSGSRD 30483
17-03-18 07:11:11.354 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:11.354 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:11.354 -07 000000480 INF: FPGA: Recv ZSGSRD 30485
17-03-18 07:11:11.364 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:11.364 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:11.364 -07 000000608 INF: FPGA: Recv ZPIEZORD 26337
17-03-18 07:11:11.374 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:11.374 -07 000000590 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.538 V. Piezo Error = -9.1 V.
17-03-18 07:11:11.374 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30481 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30481 (-135.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30475 (-135.3 uncal um), Max = 30485 (-135.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:11:11.374 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30481, posNoise = 4, negNoise = 6
17-03-18 07:11:11.374 -07 000000590 INF: Z Motor: After move to -0.136136, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:11.374 -07 000000590 INF: Z Motor: Settle wait time = 1477 ms, measure time = 104 ms (allowed 150 ms), total time = 1581 ms
17-03-18 07:11:11.374 -07 000000590 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 07:11:11.424 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-18 07:11:11.424 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:11:11.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:11:11.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:11:11.424 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:11:11.424 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:11:11.424 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:11:11.424 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:11:11.424 -07 000000447 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 07:11:11.424 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:11:11.434 -07 000000447 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:11:11.434 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:11:11.444 -07 000000447 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 07:11:11.444 -07 000000447 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 07:11:11.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:11:11.494 -07 000000447 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 07:11:11.794 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 07:11:11.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 07:11:11.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:11:11.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) start.
17-03-18 07:11:11.824 -07 000000480 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:11:11.834 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 07:11:11.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 07:11:11.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 07:11:11.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:11.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:11:11.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 07:11:11.934 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:11:11.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:11:11.934 -07 000000576 INF: Autofocus start
17-03-18 07:11:11.934 -07 000000576 INF: MeasureProfile start
17-03-18 07:11:11.934 -07 000000447 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:11:11.944 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:11:11.944 -07 000000447 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 07:11:11.944 -07 000000447 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:11:11.944 -07 000000576 INF: MeasureProfile done
17-03-18 07:11:11.944 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-18 07:11:11.944 -07 000000576 INF: Autofocus finished
17-03-18 07:11:12.144 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:11:12.144 -07 000000447 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 07:11:12.154 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.136139762304151. ----------
17-03-18 07:11:12.154 -07 000000610 INF: Cycle	158	Tile	13	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:11:12.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28264, sync = True, waitForSettling = True)
17-03-18 07:11:12.154 -07 000000610 INF: Z Motor: Moving to -0.129384 mm, started at -0.136140 mm, distance = 6.76 um
17-03-18 07:11:12.154 -07 000000610 INF: FPGA: Xmit ZDACW 28264\n [Z Motor]
17-03-18 07:11:12.154 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 07:11:12.164 -07 000000610 INF: FPGA: 'ZDACW 28264' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:11:12.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:12.164 -07 000000455 INF: FPGA: Recv ZDACR 28264
17-03-18 07:11:12.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:12.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:11:12.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:12.324 -07 000000541 INF: FPGA: Recv ZSGSRD 29428
17-03-18 07:11:12.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:12.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:12.334 -07 000000012 INF: FPGA: Recv ZSGSRD 29427
17-03-18 07:11:12.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:12.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:12.344 -07 000000626 INF: FPGA: Recv ZSGSRD 29429
17-03-18 07:11:12.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:12.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:12.354 -07 000000444 INF: FPGA: Recv ZSGSRD 29423
17-03-18 07:11:12.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:12.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:12.364 -07 000000512 INF: FPGA: Recv ZSGSRD 29428
17-03-18 07:11:12.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:12.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:12.374 -07 000000474 INF: FPGA: Recv ZSGSRD 29434
17-03-18 07:11:12.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:12.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:12.384 -07 000000579 INF: FPGA: Recv ZSGSRD 29432
17-03-18 07:11:12.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:12.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:12.394 -07 000000611 INF: FPGA: Recv ZSGSRD 29431
17-03-18 07:11:12.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:12.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:12.404 -07 000000541 INF: FPGA: Recv ZSGSRD 29426
17-03-18 07:11:12.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:12.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:12.414 -07 000000512 INF: FPGA: Recv ZSGSRD 29435
17-03-18 07:11:12.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:12.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:12.424 -07 000000590 INF: FPGA: Recv ZPIEZORD 24961
17-03-18 07:11:12.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:12.434 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.313 V. Piezo Error = -9.8 V.
17-03-18 07:11:12.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29429 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29428 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29423 (-128.6 uncal um), Max = 29435 (-128.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 07:11:12.434 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29429, posNoise = 6, negNoise = 6
17-03-18 07:11:12.434 -07 000000610 INF: Z Motor: After move to -0.129384, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:12.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:11:12.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:11:12.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:11:12.434 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:11:12.434 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:11:12.434 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:11:12.434 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:11:12.444 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:11:12.444 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:11:12.444 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:11:12.444 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:11:12.444 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 07:11:12.444 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:11:12.444 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:11:12.444 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:11:12.444 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:11:12.444 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:11:12.454 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 07:11:12.454 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 07:11:12.454 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 07:11:12.454 -07 000000474 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 07:11:12.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28440 150\n [Camera]
17-03-18 07:11:12.654 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:11:13.134 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:11:13.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:11:13.134 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:13.134 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:13.134 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 07:11:13.134 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:11:13.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:11:13.134 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:13.144 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:13.144 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 07:11:13.324 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28440 861
17-03-18 07:11:13.474 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:11:13.514 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 07:11:13.514 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:11:13.514 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:13.514 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 07:11:13.514 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 07:11:13.514 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:13.524 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:13.524 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:11:13.524 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:11:13.534 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 07:11:13.704 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:11:13.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:11:13.704 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:13.704 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:13.704 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 07:11:13.704 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:11:13.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:11:13.704 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:13.704 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:13.714 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 07:11:13.894 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:11:13.894 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:11:13.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28440 150' command took 2 ms to send, 1428 ms to get response, and 1440 ms overall
17-03-18 07:11:13.894 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.129815
17-03-18 07:11:13.904 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.12982 mm
17-03-18 07:11:13.904 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:11:13.904 -07 000000447 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 07:11:13.904 -07 000000447 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-18 07:11:13.904 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:13.904 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 28358, sync = True, waitForSettling = False)
17-03-18 07:11:13.904 -07 000000012 INF: Z Motor: Moving to -0.129815 mm, started at -0.129381 mm, distance = -0.43 um
17-03-18 07:11:13.904 -07 000000611 INF: FPGA: Recv YRDPOS 143078
17-03-18 07:11:13.914 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:11:13.914 -07 000000447 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:13.914 -07 000000447 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:11:13.914 -07 000000447 INF: Y Motor: Moving 1344 steps-22
17-03-18 07:11:13.914 -07 000000012 INF: FPGA: Xmit ZDACW 28358\n [Z Motor]
17-03-18 07:11:13.914 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 07:11:13.924 -07 000000012 INF: FPGA: 'ZDACW 28358' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 07:11:13.924 -07 000000447 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:11:13.934 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:13.934 -07 000000590 INF: FPGA: Recv ZDACR 28358
17-03-18 07:11:13.944 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:11:13.944 -07 000000012 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 07:11:14.084 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 07:11:14.084 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 07:11:14.084 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:14.094 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:11:14.094 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 07:11:14.094 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:11:14.094 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:14.094 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 07:11:14.094 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 07:11:14.094 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 07:11:14.294 -07 000000611 INF: FPGA: Recv YMVTILE
17-03-18 07:11:14.294 -07 000000447 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 07:11:14.354 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:14.354 -07 000000541 INF: FPGA: Recv YRDPOS 144768
17-03-18 07:11:14.364 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:11:14.364 -07 000000447 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:14.364 -07 000000447 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 07:11:14.364 -07 000000447 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.177 mm/sec
17-03-18 07:11:14.504 -07 000000437 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.014009,
17-03-18 07:11:15.314 -07 000000447 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:15.314 -07 000000541 INF: FPGA: Recv YRDPOS 144768
17-03-18 07:11:15.324 -07 000000447 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:15.324 -07 000000447 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:15.354 -07 000000447 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:11:15.354 -07 000000447 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:11:15.354 -07 000000447 INF: Y Motor: Moved to 70.6875 after 1451 ms (table move)
17-03-18 07:11:15.354 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129815 mm (DAC = 28358)
17-03-18 07:11:15.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.364 -07 000000455 INF: FPGA: Recv ZSGSRD 29502
17-03-18 07:11:15.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:11:15.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.364 -07 000000608 INF: FPGA: Recv ZSGSRD 29502
17-03-18 07:11:15.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.374 -07 000000611 INF: FPGA: Recv ZSGSRD 29490
17-03-18 07:11:15.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.404 -07 000000512 INF: FPGA: Recv ZSGSRD 29495
17-03-18 07:11:15.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:11:15.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.414 -07 000000541 INF: FPGA: Recv ZSGSRD 29504
17-03-18 07:11:15.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:15.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.444 -07 000000430 INF: FPGA: Recv ZSGSRD 29501
17-03-18 07:11:15.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:11:15.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.454 -07 000000501 INF: FPGA: Recv ZSGSRD 29496
17-03-18 07:11:15.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:15.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.474 -07 000000430 INF: FPGA: Recv ZSGSRD 29496
17-03-18 07:11:15.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:11:15.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.484 -07 000000480 INF: FPGA: Recv ZSGSRD 29500
17-03-18 07:11:15.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.494 -07 000000611 INF: FPGA: Recv ZSGSRD 29499
17-03-18 07:11:15.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:15.504 -07 000000512 INF: FPGA: Recv ZPIEZORD 25064
17-03-18 07:11:15.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.514 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.7 V.
17-03-18 07:11:15.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29498 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29500 (-129.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29490 (-129.0 uncal um), Max = 29504 (-129.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 07:11:15.514 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29498, posNoise = 6, negNoise = 8
17-03-18 07:11:15.514 -07 000000610 INF: Z Motor: After move to -0.129815, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:15.514 -07 000000610 INF: Z Motor: Settle wait time = 1452 ms, measure time = 154 ms (allowed 150 ms), total time = 1606 ms
17-03-18 07:11:15.514 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 154 ms, longer than max expected time of 150 ms
17-03-18 07:11:15.514 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 07:11:15.514 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:11:15.514 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.1298247617688. ----------
17-03-18 07:11:15.514 -07 000000610 INF: Cycle	158	Tile	14	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:11:15.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28181, sync = True, waitForSettling = True)
17-03-18 07:11:15.514 -07 000000610 INF: Z Motor: Moving to -0.129004 mm, started at -0.129825 mm, distance = 0.82 um
17-03-18 07:11:15.514 -07 000000610 INF: FPGA: Xmit ZDACW 28181\n [Z Motor]
17-03-18 07:11:15.514 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 07:11:15.524 -07 000000610 INF: FPGA: 'ZDACW 28181' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 07:11:15.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:15.524 -07 000000430 INF: FPGA: Recv ZDACR 28181
17-03-18 07:11:15.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:11:15.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.684 -07 000000447 INF: FPGA: Recv ZSGSRD 29372
17-03-18 07:11:15.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.694 -07 000000590 INF: FPGA: Recv ZSGSRD 29373
17-03-18 07:11:15.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.704 -07 000000611 INF: FPGA: Recv ZSGSRD 29365
17-03-18 07:11:15.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.714 -07 000000501 INF: FPGA: Recv ZSGSRD 29374
17-03-18 07:11:15.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.724 -07 000000012 INF: FPGA: Recv ZSGSRD 29372
17-03-18 07:11:15.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.734 -07 000000474 INF: FPGA: Recv ZSGSRD 29374
17-03-18 07:11:15.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.744 -07 000000480 INF: FPGA: Recv ZSGSRD 29373
17-03-18 07:11:15.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.754 -07 000000444 INF: FPGA: Recv ZSGSRD 29371
17-03-18 07:11:15.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.764 -07 000000541 INF: FPGA: Recv ZSGSRD 29373
17-03-18 07:11:15.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:15.774 -07 000000455 INF: FPGA: Recv ZSGSRD 29369
17-03-18 07:11:15.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:15.784 -07 000000608 INF: FPGA: Recv ZPIEZORD 24857
17-03-18 07:11:15.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:15.794 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.300 V. Piezo Error = -9.9 V.
17-03-18 07:11:15.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29372 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29372 (-128.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29365 (-128.2 uncal um), Max = 29374 (-128.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:11:15.794 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29372, posNoise = 2, negNoise = 7
17-03-18 07:11:15.794 -07 000000610 INF: Z Motor: After move to -0.129004, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:15.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:11:15.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:11:15.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:11:15.794 -07 000000611 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:11:15.794 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:11:15.794 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:11:15.794 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:11:15.794 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:11:15.794 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:11:15.794 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:11:15.794 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:11:15.794 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:11:15.794 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:11:15.804 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:11:15.804 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:11:15.804 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:11:15.804 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:11:15.814 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:11:15.814 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 07:11:15.814 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 07:11:15.814 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:11:15.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28358 150\n [Camera]
17-03-18 07:11:16.014 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:11:16.494 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:11:16.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:11:16.494 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:16.494 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:16.494 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 07:11:16.494 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:11:16.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:11:16.504 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:16.504 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:16.504 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 07:11:16.694 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28358 861
17-03-18 07:11:16.834 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:11:16.874 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 07:11:16.874 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 07:11:16.874 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:16.874 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 07:11:16.874 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 07:11:16.874 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:16.884 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:11:16.884 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:11:16.884 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 07:11:17.004 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:11:17.004 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:11:17.014 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-18 07:11:17.064 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:11:17.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:11:17.064 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:17.074 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:11:17.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:11:17.074 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:17.074 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:17.074 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 07:11:17.074 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:17.074 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) start.
17-03-18 07:11:17.254 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:11:17.264 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:11:17.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28358 150' command took 2 ms to send, 1430 ms to get response, and 1439 ms overall
17-03-18 07:11:17.264 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129646
17-03-18 07:11:17.264 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12965 mm
17-03-18 07:11:17.264 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:11:17.264 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 28321, sync = True, waitForSettling = False)
17-03-18 07:11:17.264 -07 000000626 INF: Z Motor: Moving to -0.129645 mm, started at -0.129015 mm, distance = -0.63 um
17-03-18 07:11:17.264 -07 000000626 INF: FPGA: Xmit ZDACW 28321\n [Z Motor]
17-03-18 07:11:17.264 -07 000000437 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 07:11:17.264 -07 000000437 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-18 07:11:17.264 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:11:17.274 -07 000000626 INF: FPGA: 'ZDACW 28321' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:11:17.274 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:17.274 -07 000000611 INF: FPGA: Recv YRDPOS 144768
17-03-18 07:11:17.284 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 07:11:17.284 -07 000000437 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:17.284 -07 000000437 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:11:17.284 -07 000000437 INF: Y Motor: Moving 1352 steps-31
17-03-18 07:11:17.284 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:17.284 -07 000000447 INF: FPGA: Recv ZDACR 28321
17-03-18 07:11:17.294 -07 000000626 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:11:17.294 -07 000000626 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 07:11:17.294 -07 000000437 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:11:17.444 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 07:11:17.444 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 07:11:17.444 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:17.454 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:11:17.454 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 07:11:17.454 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 07:11:17.454 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:17.454 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:11:17.454 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 07:11:17.464 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 07:11:17.664 -07 000000474 INF: FPGA: Recv YMVTILE
17-03-18 07:11:17.664 -07 000000437 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 07:11:17.724 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:17.724 -07 000000611 INF: FPGA: Recv YRDPOS 146469
17-03-18 07:11:17.734 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:11:17.734 -07 000000437 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:17.734 -07 000000437 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 07:11:17.734 -07 000000437 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.178 mm/sec
17-03-18 07:11:18.684 -07 000000437 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:18.684 -07 000000474 INF: FPGA: Recv YRDPOS 146469
17-03-18 07:11:18.694 -07 000000437 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:18.694 -07 000000437 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:18.724 -07 000000437 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:11:18.724 -07 000000437 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:11:18.724 -07 000000437 INF: Y Motor: Moved to 71.5181 after 1458 ms (table move)
17-03-18 07:11:18.724 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129645 mm (DAC = 28321)
17-03-18 07:11:18.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:18.734 -07 000000590 INF: FPGA: Recv ZSGSRD 29474
17-03-18 07:11:18.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 07:11:18.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:18.734 -07 000000430 INF: FPGA: Recv ZSGSRD 29475
17-03-18 07:11:18.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:11:18.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:18.744 -07 000000541 INF: FPGA: Recv ZSGSRD 29474
17-03-18 07:11:18.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:18.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:18.754 -07 000000611 INF: FPGA: Recv ZSGSRD 29471
17-03-18 07:11:18.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:18.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:18.764 -07 000000487 INF: FPGA: Recv ZSGSRD 29469
17-03-18 07:11:18.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:18.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:18.774 -07 000000512 INF: FPGA: Recv ZSGSRD 29469
17-03-18 07:11:18.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:18.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:18.784 -07 000000430 INF: FPGA: Recv ZSGSRD 29467
17-03-18 07:11:18.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:18.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:18.794 -07 000000444 INF: FPGA: Recv ZSGSRD 29471
17-03-18 07:11:18.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:18.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:18.804 -07 000000579 INF: FPGA: Recv ZSGSRD 29473
17-03-18 07:11:18.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:18.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:18.814 -07 000000474 INF: FPGA: Recv ZSGSRD 29473
17-03-18 07:11:18.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:18.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:18.824 -07 000000447 INF: FPGA: Recv ZPIEZORD 25000
17-03-18 07:11:18.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:18.834 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -9.8 V.
17-03-18 07:11:18.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29472 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29472 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29467 (-128.8 uncal um), Max = 29475 (-128.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:11:18.834 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29472, posNoise = 3, negNoise = 5
17-03-18 07:11:18.834 -07 000000610 INF: Z Motor: After move to -0.129645, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:18.834 -07 000000610 INF: Z Motor: Settle wait time = 1463 ms, measure time = 102 ms (allowed 150 ms), total time = 1565 ms
17-03-18 07:11:18.834 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 07:11:18.884 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 07:11:18.884 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:11:18.884 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.129657732253114. ----------
17-03-18 07:11:18.884 -07 000000610 INF: Cycle	158	Tile	15	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:11:18.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28144, sync = True, waitForSettling = True)
17-03-18 07:11:18.884 -07 000000610 INF: Z Motor: Moving to -0.128835 mm, started at -0.129658 mm, distance = 0.82 um
17-03-18 07:11:18.884 -07 000000610 INF: FPGA: Xmit ZDACW 28144\n [Z Motor]
17-03-18 07:11:18.894 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:11:18.894 -07 000000610 INF: FPGA: 'ZDACW 28144' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 07:11:18.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:18.894 -07 000000590 INF: FPGA: Recv ZDACR 28144
17-03-18 07:11:18.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:11:18.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:11:19.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:19.054 -07 000000611 INF: FPGA: Recv ZSGSRD 29350
17-03-18 07:11:19.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:19.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:19.064 -07 000000579 INF: FPGA: Recv ZSGSRD 29344
17-03-18 07:11:19.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:19.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:19.074 -07 000000512 INF: FPGA: Recv ZSGSRD 29345
17-03-18 07:11:19.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:19.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:19.084 -07 000000430 INF: FPGA: Recv ZSGSRD 29349
17-03-18 07:11:19.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:19.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:19.094 -07 000000487 INF: FPGA: Recv ZSGSRD 29344
17-03-18 07:11:19.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:19.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:19.104 -07 000000501 INF: FPGA: Recv ZSGSRD 29345
17-03-18 07:11:19.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:19.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:19.114 -07 000000444 INF: FPGA: Recv ZSGSRD 29342
17-03-18 07:11:19.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:19.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:19.124 -07 000000626 INF: FPGA: Recv ZSGSRD 29344
17-03-18 07:11:19.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:19.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:19.134 -07 000000430 INF: FPGA: Recv ZSGSRD 29347
17-03-18 07:11:19.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:19.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:19.144 -07 000000012 INF: FPGA: Recv ZSGSRD 29344
17-03-18 07:11:19.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:19.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:19.154 -07 000000501 INF: FPGA: Recv ZPIEZORD 24845
17-03-18 07:11:19.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:19.164 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.9 V.
17-03-18 07:11:19.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29345 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29344 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29342 (-128.0 uncal um), Max = 29350 (-128.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 07:11:19.164 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29345, posNoise = 5, negNoise = 3
17-03-18 07:11:19.164 -07 000000610 INF: Z Motor: After move to -0.128835, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:19.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:11:19.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:11:19.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:11:19.164 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:11:19.164 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:11:19.164 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:11:19.164 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:11:19.164 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:11:19.164 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:11:19.164 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:11:19.164 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:11:19.164 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:11:19.164 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:11:19.174 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 07:11:19.174 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:11:19.174 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:11:19.174 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:11:19.184 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 07:11:19.184 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:11:19.184 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 07:11:19.184 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:11:19.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28321 150\n [Camera]
17-03-18 07:11:19.394 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-18 07:11:19.864 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.985358,
17-03-18 07:11:19.864 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:11:19.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:11:19.864 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:19.864 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:19.864 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 07:11:19.864 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:11:19.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:11:19.874 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:19.874 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:19.874 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 07:11:20.054 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28321 861
17-03-18 07:11:20.204 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:11:20.244 -07 000000437 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 07:11:20.244 -07 000000437 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 07:11:20.244 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:20.244 -07 000000611 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 07:11:20.244 -07 000000611 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 07:11:20.244 -07 000000611 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:20.244 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:20.244 -07 000000437 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 07:11:20.254 -07 000000611 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:20.254 -07 000000611 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 07:11:20.434 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:11:20.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:11:20.444 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:11:20.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:11:20.444 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:20.444 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:20.554 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:20.554 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 07:11:20.564 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:20.564 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) start.
17-03-18 07:11:20.624 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-18 07:11:20.634 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:11:20.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28321 150' command took 2 ms to send, 1430 ms to get response, and 1440 ms overall
17-03-18 07:11:20.634 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129187
17-03-18 07:11:20.634 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12919 mm
17-03-18 07:11:20.634 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:11:20.644 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 28221, sync = True, waitForSettling = False)
17-03-18 07:11:20.644 -07 000000626 INF: Z Motor: Moving to -0.129187 mm, started at -0.128842 mm, distance = -0.35 um
17-03-18 07:11:20.644 -07 000000626 INF: FPGA: Xmit ZDACW 28221\n [Z Motor]
17-03-18 07:11:20.644 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 07:11:20.644 -07 000000541 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 07:11:20.644 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:11:20.654 -07 000000626 INF: FPGA: 'ZDACW 28221' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:11:20.654 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:20.654 -07 000000590 INF: FPGA: Recv YRDPOS 146469
17-03-18 07:11:20.664 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 07:11:20.664 -07 000000541 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:20.664 -07 000000541 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:11:20.664 -07 000000541 INF: Y Motor: Moving 1351 steps-30
17-03-18 07:11:20.664 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:20.664 -07 000000455 INF: FPGA: Recv ZDACR 28221
17-03-18 07:11:20.674 -07 000000626 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:11:20.674 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:11:20.674 -07 000000626 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 07:11:20.934 -07 000000437 INF: Camera: sBCa_ReadImage(785074704, 575218160, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 07:11:20.934 -07 000000437 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 07:11:20.934 -07 000000437 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:20.944 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 07:11:20.944 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 498 ms.
17-03-18 07:11:20.944 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:20.944 -07 000000437 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:20.944 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:11:20.944 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-18 07:11:20.954 -07 000000437 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-18 07:11:21.054 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-18 07:11:21.054 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 07:11:21.124 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:21.124 -07 000000455 INF: FPGA: Recv YRDPOS 148169
17-03-18 07:11:21.134 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:11:21.134 -07 000000541 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:21.134 -07 000000541 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 07:11:21.134 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.845 mm, average velocity = 2.171 mm/sec
17-03-18 07:11:21.934 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:11:21.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:11:22.084 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:22.084 -07 000000012 INF: FPGA: Recv YRDPOS 148170
17-03-18 07:11:22.094 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:22.094 -07 000000541 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:22.124 -07 000000541 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:11:22.124 -07 000000541 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:11:22.124 -07 000000541 INF: Y Motor: Moved to 72.3486 after 1482 ms (table move)
17-03-18 07:11:22.124 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129187 mm (DAC = 28221)
17-03-18 07:11:22.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.124 -07 000000576 INF: FPGA: Recv ZSGSRD 29397
17-03-18 07:11:22.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:11:22.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.134 -07 000000437 INF: FPGA: Recv ZSGSRD 29399
17-03-18 07:11:22.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.144 -07 000000444 INF: FPGA: Recv ZSGSRD 29398
17-03-18 07:11:22.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.154 -07 000000012 INF: FPGA: Recv ZSGSRD 29399
17-03-18 07:11:22.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.164 -07 000000480 INF: FPGA: Recv ZSGSRD 29401
17-03-18 07:11:22.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.174 -07 000000455 INF: FPGA: Recv ZSGSRD 29401
17-03-18 07:11:22.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.184 -07 000000444 INF: FPGA: Recv ZSGSRD 29403
17-03-18 07:11:22.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.194 -07 000000590 INF: FPGA: Recv ZSGSRD 29397
17-03-18 07:11:22.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.204 -07 000000512 INF: FPGA: Recv ZSGSRD 29395
17-03-18 07:11:22.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.214 -07 000000611 INF: FPGA: Recv ZSGSRD 29404
17-03-18 07:11:22.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:22.224 -07 000000501 INF: FPGA: Recv ZPIEZORD 24934
17-03-18 07:11:22.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.234 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.306 V. Piezo Error = -9.8 V.
17-03-18 07:11:22.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29399 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29399 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29395 (-128.4 uncal um), Max = 29404 (-128.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:11:22.234 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29399, posNoise = 5, negNoise = 4
17-03-18 07:11:22.234 -07 000000610 INF: Z Motor: After move to -0.129187, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:22.234 -07 000000610 INF: Z Motor: Settle wait time = 1485 ms, measure time = 104 ms (allowed 150 ms), total time = 1589 ms
17-03-18 07:11:22.234 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 07:11:22.284 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1643 ms
17-03-18 07:11:22.284 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:11:22.284 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.129188764766765. ----------
17-03-18 07:11:22.284 -07 000000610 INF: Cycle	158	Tile	16	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:11:22.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28044, sync = True, waitForSettling = True)
17-03-18 07:11:22.284 -07 000000610 INF: Z Motor: Moving to -0.128377 mm, started at -0.129189 mm, distance = 0.81 um
17-03-18 07:11:22.284 -07 000000610 INF: FPGA: Xmit ZDACW 28044\n [Z Motor]
17-03-18 07:11:22.284 -07 000000487 INF: FPGA: Recv ZDACW
17-03-18 07:11:22.294 -07 000000610 INF: FPGA: 'ZDACW 28044' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:11:22.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:22.294 -07 000000501 INF: FPGA: Recv ZDACR 28044
17-03-18 07:11:22.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:11:22.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.454 -07 000000444 INF: FPGA: Recv ZSGSRD 29279
17-03-18 07:11:22.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:22.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.464 -07 000000590 INF: FPGA: Recv ZSGSRD 29269
17-03-18 07:11:22.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.474 -07 000000455 INF: FPGA: Recv ZSGSRD 29281
17-03-18 07:11:22.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.484 -07 000000611 INF: FPGA: Recv ZSGSRD 29273
17-03-18 07:11:22.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.494 -07 000000608 INF: FPGA: Recv ZSGSRD 29269
17-03-18 07:11:22.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.504 -07 000000444 INF: FPGA: Recv ZSGSRD 29277
17-03-18 07:11:22.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.514 -07 000000480 INF: FPGA: Recv ZSGSRD 29273
17-03-18 07:11:22.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.524 -07 000000455 INF: FPGA: Recv ZSGSRD 29273
17-03-18 07:11:22.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.534 -07 000000512 INF: FPGA: Recv ZSGSRD 29270
17-03-18 07:11:22.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:11:22.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:22.544 -07 000000541 INF: FPGA: Recv ZSGSRD 29270
17-03-18 07:11:22.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:22.554 -07 000000626 INF: FPGA: Recv ZPIEZORD 24780
17-03-18 07:11:22.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:22.564 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.279 V. Piezo Error = -9.9 V.
17-03-18 07:11:22.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29273 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29273 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29269 (-127.6 uncal um), Max = 29281 (-127.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:11:22.564 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29273, posNoise = 8, negNoise = 4
17-03-18 07:11:22.564 -07 000000610 INF: Z Motor: After move to -0.128377, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:22.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:11:22.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:11:22.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:11:22.564 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:11:22.564 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:11:22.564 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:11:22.564 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:11:22.564 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:11:22.564 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:11:22.564 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:11:22.564 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:11:22.564 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:11:22.564 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:11:22.564 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:11:22.564 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:11:22.574 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:11:22.574 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:11:22.584 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:11:22.584 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:11:22.584 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:11:22.584 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 07:11:22.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28221 150\n [Camera]
17-03-18 07:11:22.794 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:11:23.264 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:11:23.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:11:23.264 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:11:23.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:11:23.264 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:23.274 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:23.274 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:23.274 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 07:11:23.284 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:23.284 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 07:11:23.454 -07 000000474 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28221 861
17-03-18 07:11:23.604 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:11:23.644 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 07:11:23.644 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 07:11:23.644 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:23.654 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:11:23.654 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 371 ms.
17-03-18 07:11:23.654 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 07:11:23.654 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:23.654 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 07:11:23.654 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 07:11:23.654 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 07:11:23.834 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:11:23.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:11:23.834 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:23.834 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:23.834 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 07:11:23.844 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:11:23.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:11:23.844 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:23.844 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:23.844 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 07:11:24.024 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-18 07:11:24.024 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:11:24.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28221 150' command took 2 ms to send, 1429 ms to get response, and 1439 ms overall
17-03-18 07:11:24.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 07:11:24.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.128379314036903. ------
17-03-18 07:11:24.034 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13481 mm
17-03-18 07:11:24.034 -07 000000437 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:11:24.034 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:11:24.034 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 07:11:24.034 -07 000000012 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-18 07:11:24.034 -07 000000611 INF: Z Motor: Entering MoveAbsStepped (DAC = 29449, sync = True, waitForSettling = False)
17-03-18 07:11:24.034 -07 000000611 INF: Z Motor: Moving to -0.134809 mm, started at -0.128379 mm, distance = -6.43 um
17-03-18 07:11:24.044 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:11:24.044 -07 000000611 INF: FPGA: Xmit ZDACW 29449\n [Z Motor]
17-03-18 07:11:24.044 -07 000000437 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:11:24.044 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:11:24.054 -07 000000611 INF: FPGA: 'ZDACW 29449' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:24.054 -07 000000437 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 07:11:24.064 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:24.064 -07 000000579 INF: FPGA: Recv YRDPOS 148170
17-03-18 07:11:24.074 -07 000000611 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:24.074 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 07:11:24.074 -07 000000012 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:24.074 -07 000000012 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:11:24.074 -07 000000012 INF: Y Motor: Moving 1350 steps-30
17-03-18 07:11:24.074 -07 000000455 INF: FPGA: Recv ZDACR 29449
17-03-18 07:11:24.084 -07 000000611 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 07:11:24.084 -07 000000611 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 07:11:24.084 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:11:24.214 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 07:11:24.214 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 07:11:24.214 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:24.224 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 07:11:24.224 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 07:11:24.224 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:24.224 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:24.224 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:11:24.224 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:11:24.234 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 07:11:24.254 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 07:11:24.254 -07 000000437 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 07:11:24.454 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-18 07:11:24.454 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 07:11:24.514 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:24.514 -07 000000576 INF: FPGA: Recv YRDPOS 149861
17-03-18 07:11:24.524 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:11:24.524 -07 000000012 INF: Y Motor: Encoder = 149861 = motor step 117078.9 = 73.1743 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:24.524 -07 000000012 INF: Y Motor: Position error before settling (table move) = -37 encoder counts (-0.018 mm)
17-03-18 07:11:24.524 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-18 07:11:25.224 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.999021,
17-03-18 07:11:25.474 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:25.474 -07 000000501 INF: FPGA: Recv YRDPOS 149862
17-03-18 07:11:25.484 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:25.484 -07 000000012 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:25.514 -07 000000012 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:11:25.514 -07 000000012 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:11:25.514 -07 000000012 INF: Y Motor: Moved to 73.1748 after 1475 ms (table move)
17-03-18 07:11:25.514 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134809 mm (DAC = 29449)
17-03-18 07:11:25.514 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:25.524 -07 000000501 INF: FPGA: Recv ZSGSRD 30281
17-03-18 07:11:25.534 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:25.534 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:25.534 -07 000000447 INF: FPGA: Recv ZSGSRD 30268
17-03-18 07:11:25.544 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:25.544 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:25.544 -07 000000512 INF: FPGA: Recv ZSGSRD 30276
17-03-18 07:11:25.554 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:25.554 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:25.554 -07 000000608 INF: FPGA: Recv ZSGSRD 30274
17-03-18 07:11:25.564 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:25.564 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:25.564 -07 000000437 INF: FPGA: Recv ZSGSRD 30277
17-03-18 07:11:25.574 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:25.574 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:25.574 -07 000000012 INF: FPGA: Recv ZSGSRD 30274
17-03-18 07:11:25.584 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:25.584 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:25.584 -07 000000512 INF: FPGA: Recv ZSGSRD 30271
17-03-18 07:11:25.594 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:25.594 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:25.594 -07 000000501 INF: FPGA: Recv ZSGSRD 30281
17-03-18 07:11:25.604 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:25.604 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:25.604 -07 000000576 INF: FPGA: Recv ZSGSRD 30273
17-03-18 07:11:25.614 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:25.614 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:25.614 -07 000000474 INF: FPGA: Recv ZSGSRD 30278
17-03-18 07:11:25.624 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:25.624 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:25.624 -07 000000590 INF: FPGA: Recv ZPIEZORD 26125
17-03-18 07:11:25.634 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:25.634 -07 000000480 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.494 V. Piezo Error = -9.1 V.
17-03-18 07:11:25.634 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30275 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30275 (-134.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30268 (-134.0 uncal um), Max = 30281 (-134.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:11:25.634 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30275, posNoise = 6, negNoise = 7
17-03-18 07:11:25.634 -07 000000480 INF: Z Motor: After move to -0.134809, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:25.634 -07 000000480 INF: Z Motor: Settle wait time = 1480 ms, measure time = 111 ms (allowed 150 ms), total time = 1591 ms
17-03-18 07:11:25.634 -07 000000480 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 07:11:25.674 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1633 ms
17-03-18 07:11:25.674 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:11:25.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:11:25.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:11:25.684 -07 000000474 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:11:25.684 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:11:25.684 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 07:11:25.684 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:11:25.684 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:11:25.684 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 07:11:25.684 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 07:11:25.684 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 07:11:25.694 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 07:11:25.694 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 07:11:25.704 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 07:11:25.744 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 07:11:26.044 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 07:11:26.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 07:11:26.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 07:11:26.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) start.
17-03-18 07:11:26.084 -07 000000012 INF: FPGA: Recv @CAMSNAP 380
17-03-18 07:11:26.084 -07 000000474 INF: FPGA: Recv CAMSNAP
17-03-18 07:11:26.084 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 07:11:26.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610640424, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 07:11:26.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:26.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 07:11:26.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 07:11:26.284 -07 000000487 INF: Autofocus start
17-03-18 07:11:26.284 -07 000000487 INF: MeasureProfile start
17-03-18 07:11:26.284 -07 000000611 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 07:11:26.284 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 07:11:26.294 -07 000000611 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 07:11:26.294 -07 000000611 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 07:11:26.294 -07 000000487 INF: MeasureProfile done
17-03-18 07:11:26.294 -07 000000487 INF: X=-48  Z correction [um]=-0.2370583
17-03-18 07:11:26.294 -07 000000487 INF: Autofocus finished
17-03-18 07:11:26.494 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-18 07:11:26.494 -07 000000611 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 07:11:26.494 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.134816374602948. ----------
17-03-18 07:11:26.504 -07 000000610 INF: Cycle	158	Tile	17	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:11:26.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27910, sync = True, waitForSettling = True)
17-03-18 07:11:26.504 -07 000000610 INF: Z Motor: Moving to -0.127764 mm, started at -0.134816 mm, distance = 7.05 um
17-03-18 07:11:26.504 -07 000000610 INF: FPGA: Xmit ZDACW 27910\n [Z Motor]
17-03-18 07:11:26.504 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:11:26.514 -07 000000610 INF: FPGA: 'ZDACW 27910' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:11:26.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:26.514 -07 000000437 INF: FPGA: Recv ZDACR 27910
17-03-18 07:11:26.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:26.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:11:26.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:26.674 -07 000000579 INF: FPGA: Recv ZSGSRD 29183
17-03-18 07:11:26.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:26.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:26.684 -07 000000501 INF: FPGA: Recv ZSGSRD 29177
17-03-18 07:11:26.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:26.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:26.694 -07 000000626 INF: FPGA: Recv ZSGSRD 29179
17-03-18 07:11:26.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:26.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:26.704 -07 000000480 INF: FPGA: Recv ZSGSRD 29177
17-03-18 07:11:26.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:26.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:26.714 -07 000000012 INF: FPGA: Recv ZSGSRD 29175
17-03-18 07:11:26.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:26.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:26.724 -07 000000590 INF: FPGA: Recv ZSGSRD 29181
17-03-18 07:11:26.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:26.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:26.734 -07 000000444 INF: FPGA: Recv ZSGSRD 29178
17-03-18 07:11:26.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:26.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:26.744 -07 000000608 INF: FPGA: Recv ZSGSRD 29179
17-03-18 07:11:26.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:26.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:26.754 -07 000000437 INF: FPGA: Recv ZSGSRD 29179
17-03-18 07:11:26.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:26.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:26.764 -07 000000430 INF: FPGA: Recv ZSGSRD 29176
17-03-18 07:11:26.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:26.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:26.774 -07 000000590 INF: FPGA: Recv ZPIEZORD 24673
17-03-18 07:11:26.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:26.784 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.259 V. Piezo Error = -9.9 V.
17-03-18 07:11:26.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29178 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29178 (-127.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29175 (-127.0 uncal um), Max = 29183 (-127.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 07:11:26.784 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29178, posNoise = 5, negNoise = 3
17-03-18 07:11:26.784 -07 000000610 INF: Z Motor: After move to -0.127764, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:26.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 07:11:26.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:11:26.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:11:26.784 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:11:26.784 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:11:26.784 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:11:26.784 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:11:26.784 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:11:26.784 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:11:26.784 -07 000000474 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 07:11:26.784 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:11:26.784 -07 000000611 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:11:26.784 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:11:26.794 -07 000000474 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:11:26.794 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:11:26.794 -07 000000611 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:11:26.794 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:11:26.804 -07 000000474 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 07:11:26.804 -07 000000474 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 07:11:26.804 -07 000000611 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 07:11:26.804 -07 000000611 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 07:11:26.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28086 150\n [Camera]
17-03-18 07:11:26.934 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:11:26.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:11:27.004 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:11:27.484 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:11:27.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:11:27.484 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:27.484 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:27.484 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 07:11:27.484 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:11:27.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:11:27.484 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:27.484 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:27.484 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 07:11:27.674 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28086 861
17-03-18 07:11:27.824 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:11:27.854 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 07:11:27.854 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 07:11:27.854 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:27.854 -07 000000487 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 07:11:27.854 -07 000000487 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 07:11:27.854 -07 000000487 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:27.864 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:27.864 -07 000000487 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:27.864 -07 000000487 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:11:27.874 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 07:11:28.054 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1243
17-03-18 07:11:28.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1243
17-03-18 07:11:28.054 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:28.054 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1243
17-03-18 07:11:28.054 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:28.054 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 07:11:28.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1243
17-03-18 07:11:28.054 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:28.054 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:28.054 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 07:11:28.244 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:11:28.244 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:11:28.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28086 150' command took 2 ms to send, 1433 ms to get response, and 1440 ms overall
17-03-18 07:11:28.244 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.127771
17-03-18 07:11:28.244 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12777 mm
17-03-18 07:11:28.244 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:11:28.374 -07 000000474 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 07:11:28.384 -07 000000474 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-18 07:11:28.384 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:28.384 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 27912, sync = True, waitForSettling = False)
17-03-18 07:11:28.384 -07 000000012 INF: Z Motor: Moving to -0.127773 mm, started at -0.127769 mm, distance = 0.00 um
17-03-18 07:11:28.384 -07 000000444 INF: FPGA: Recv YRDPOS 149862
17-03-18 07:11:28.394 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:28.394 -07 000000474 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:28.394 -07 000000474 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:11:28.394 -07 000000474 INF: Y Motor: Moving 1356 steps-37
17-03-18 07:11:28.394 -07 000000012 INF: FPGA: Xmit ZDACW 27912\n [Z Motor]
17-03-18 07:11:28.394 -07 000000611 INF: FPGA: Recv ZDACW
17-03-18 07:11:28.404 -07 000000012 INF: FPGA: 'ZDACW 27912' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:11:28.404 -07 000000474 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:11:28.414 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:28.414 -07 000000611 INF: FPGA: Recv ZDACR 27912
17-03-18 07:11:28.424 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 07:11:28.424 -07 000000012 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 07:11:28.454 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 07:11:28.454 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 07:11:28.454 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:28.454 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 07:11:28.454 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 07:11:28.454 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:28.464 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:28.464 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 07:11:28.464 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:28.464 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 07:11:28.774 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-18 07:11:28.774 -07 000000474 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 07:11:28.824 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:28.824 -07 000000576 INF: FPGA: Recv YRDPOS 151566
17-03-18 07:11:28.834 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 07:11:28.834 -07 000000474 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:28.834 -07 000000474 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 07:11:28.834 -07 000000474 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.848 mm, average velocity = 2.185 mm/sec
17-03-18 07:11:29.784 -07 000000474 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:29.784 -07 000000626 INF: FPGA: Recv YRDPOS 151566
17-03-18 07:11:29.794 -07 000000474 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:29.794 -07 000000474 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:29.814 -07 000000474 INF: Y Motor: After move to 74.022606, error = -0.015770, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:11:29.814 -07 000000474 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:11:29.814 -07 000000474 INF: Y Motor: Moved to 74.0068 after 1436 ms (table move)
17-03-18 07:11:29.814 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.127773 mm (DAC = 27912)
17-03-18 07:11:29.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:29.824 -07 000000579 INF: FPGA: Recv ZSGSRD 29178
17-03-18 07:11:29.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 4 ms overall
17-03-18 07:11:29.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:29.824 -07 000000590 INF: FPGA: Recv ZSGSRD 29179
17-03-18 07:11:29.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:11:29.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:29.834 -07 000000474 INF: FPGA: Recv ZSGSRD 29185
17-03-18 07:11:29.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:29.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:29.844 -07 000000611 INF: FPGA: Recv ZSGSRD 29173
17-03-18 07:11:29.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:29.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:29.854 -07 000000576 INF: FPGA: Recv ZSGSRD 29172
17-03-18 07:11:29.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:29.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:29.864 -07 000000541 INF: FPGA: Recv ZSGSRD 29184
17-03-18 07:11:29.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:29.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:29.874 -07 000000487 INF: FPGA: Recv ZSGSRD 29179
17-03-18 07:11:29.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:29.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:29.884 -07 000000447 INF: FPGA: Recv ZSGSRD 29182
17-03-18 07:11:29.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:29.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:29.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29172
17-03-18 07:11:29.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:29.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:29.904 -07 000000480 INF: FPGA: Recv ZSGSRD 29184
17-03-18 07:11:29.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:29.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:29.914 -07 000000012 INF: FPGA: Recv ZPIEZORD 24706
17-03-18 07:11:29.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:29.924 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.259 V. Piezo Error = -9.8 V.
17-03-18 07:11:29.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29179 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29179 (-127.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29172 (-127.0 uncal um), Max = 29185 (-127.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:11:29.924 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29179, posNoise = 6, negNoise = 7
17-03-18 07:11:29.924 -07 000000610 INF: Z Motor: After move to -0.127773, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:29.924 -07 000000610 INF: Z Motor: Settle wait time = 1438 ms, measure time = 101 ms (allowed 150 ms), total time = 1539 ms
17-03-18 07:11:29.924 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 07:11:29.974 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms
17-03-18 07:11:29.974 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:11:29.974 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0068359375, Z-position -0.127775438095578. ----------
17-03-18 07:11:29.974 -07 000000610 INF: Cycle	158	Tile	18	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:11:29.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27735, sync = True, waitForSettling = True)
17-03-18 07:11:29.984 -07 000000610 INF: Z Motor: Moving to -0.126963 mm, started at -0.127775 mm, distance = 0.81 um
17-03-18 07:11:29.984 -07 000000610 INF: FPGA: Xmit ZDACW 27735\n [Z Motor]
17-03-18 07:11:29.984 -07 000000608 INF: FPGA: Recv ZDACW
17-03-18 07:11:29.994 -07 000000610 INF: FPGA: 'ZDACW 27735' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 07:11:29.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:29.994 -07 000000455 INF: FPGA: Recv ZDACR 27735
17-03-18 07:11:30.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:30.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:11:30.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:30.154 -07 000000487 INF: FPGA: Recv ZSGSRD 29059
17-03-18 07:11:30.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:30.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:30.164 -07 000000480 INF: FPGA: Recv ZSGSRD 29055
17-03-18 07:11:30.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:30.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:30.174 -07 000000626 INF: FPGA: Recv ZSGSRD 29048
17-03-18 07:11:30.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:30.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:30.184 -07 000000608 INF: FPGA: Recv ZSGSRD 29050
17-03-18 07:11:30.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:30.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:30.194 -07 000000437 INF: FPGA: Recv ZSGSRD 29052
17-03-18 07:11:30.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:11:30.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:30.204 -07 000000512 INF: FPGA: Recv ZSGSRD 29053
17-03-18 07:11:30.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:30.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:30.214 -07 000000576 INF: FPGA: Recv ZSGSRD 29051
17-03-18 07:11:30.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:30.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:30.224 -07 000000501 INF: FPGA: Recv ZSGSRD 29052
17-03-18 07:11:30.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:30.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:30.234 -07 000000455 INF: FPGA: Recv ZSGSRD 29059
17-03-18 07:11:30.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:30.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:30.244 -07 000000437 INF: FPGA: Recv ZSGSRD 29051
17-03-18 07:11:30.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:30.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:30.254 -07 000000512 INF: FPGA: Recv ZPIEZORD 24558
17-03-18 07:11:30.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:30.264 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.232 V. Piezo Error = -9.9 V.
17-03-18 07:11:30.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29053 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29052 (-126.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29048 (-126.2 uncal um), Max = 29059 (-126.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 07:11:30.264 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29053, posNoise = 6, negNoise = 5
17-03-18 07:11:30.264 -07 000000610 INF: Z Motor: After move to -0.126963, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:30.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 07:11:30.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:11:30.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:11:30.264 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:11:30.264 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:11:30.264 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:11:30.264 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:11:30.264 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:11:30.264 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:11:30.264 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 07:11:30.264 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:11:30.264 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:11:30.264 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:11:30.274 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 07:11:30.274 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:11:30.274 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 07:11:30.274 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:11:30.274 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 07:11:30.274 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 07:11:30.284 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 07:11:30.284 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 07:11:30.284 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 27912 150\n [Camera]
17-03-18 07:11:30.484 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:11:30.584 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.985358,
17-03-18 07:11:30.964 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-18 07:11:30.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-18 07:11:30.964 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:30.964 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-18 07:11:30.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-18 07:11:30.964 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:30.964 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:30.964 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) start.
17-03-18 07:11:30.974 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:30.974 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 07:11:31.154 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27912 863
17-03-18 07:11:31.304 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:11:31.334 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 07:11:31.334 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 07:11:31.334 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:31.344 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:31.344 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 07:11:31.344 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 07:11:31.344 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 07:11:31.344 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:31.344 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:31.354 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 07:11:31.534 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:11:31.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:11:31.534 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:31.534 -07 000000487 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:11:31.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:11:31.544 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:31.544 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 07:11:31.544 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:31.544 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:31.544 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 07:11:31.724 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:11:31.724 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:11:31.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 27912 150' command took 2 ms to send, 1434 ms to get response, and 1439 ms overall
17-03-18 07:11:31.724 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.127337
17-03-18 07:11:31.724 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12734 mm
17-03-18 07:11:31.724 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 07:11:31.724 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 07:11:31.724 -07 000000444 INF: Y Motor: Moving to 74.8526 mm, started at 74.0068 mm, delta = 0.8458 mm
17-03-18 07:11:31.724 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:31.724 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 27817, sync = True, waitForSettling = False)
17-03-18 07:11:31.724 -07 000000590 INF: Z Motor: Moving to -0.127338 mm, started at -0.126966 mm, distance = -0.37 um
17-03-18 07:11:31.734 -07 000000590 INF: FPGA: Xmit ZDACW 27817\n [Z Motor]
17-03-18 07:11:31.734 -07 000000487 INF: FPGA: Recv YRDPOS 151566
17-03-18 07:11:31.734 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 07:11:31.734 -07 000000444 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:31.734 -07 000000444 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 07:11:31.734 -07 000000444 INF: Y Motor: Moving 1353 steps-32
17-03-18 07:11:31.734 -07 000000474 INF: FPGA: Recv ZDACW
17-03-18 07:11:31.744 -07 000000590 INF: FPGA: 'ZDACW 27817' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:31.744 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:31.744 -07 000000611 INF: FPGA: Recv ZDACR 27817
17-03-18 07:11:31.754 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:31.754 -07 000000590 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 07:11:31.754 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 07:11:31.924 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 07:11:31.924 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 07:11:31.924 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:31.924 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 07:11:31.924 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 07:11:31.924 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:31.934 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:31.934 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 07:11:31.934 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:31.934 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:11:31.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 157. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:11:31.934 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 07:11:32.124 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-18 07:11:32.124 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 07:11:32.164 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:32.164 -07 000000626 INF: FPGA: Recv YRDPOS 153253
17-03-18 07:11:32.174 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 07:11:32.174 -07 000000444 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:32.174 -07 000000444 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-18 07:11:32.174 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.846 mm, average velocity = 2.136 mm/sec
17-03-18 07:11:33.124 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:33.124 -07 000000626 INF: FPGA: Recv YRDPOS 153254
17-03-18 07:11:33.134 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:33.134 -07 000000444 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:33.154 -07 000000444 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:11:33.154 -07 000000444 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 07:11:33.154 -07 000000444 INF: Y Motor: Moved to 74.8311 after 1423 ms (table move)
17-03-18 07:11:33.154 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.127338 mm (DAC = 27817)
17-03-18 07:11:33.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.154 -07 000000455 INF: FPGA: Recv ZSGSRD 29111
17-03-18 07:11:33.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 07:11:33.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.164 -07 000000501 INF: FPGA: Recv ZSGSRD 29111
17-03-18 07:11:33.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.174 -07 000000430 INF: FPGA: Recv ZSGSRD 29107
17-03-18 07:11:33.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.184 -07 000000447 INF: FPGA: Recv ZSGSRD 29116
17-03-18 07:11:33.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.194 -07 000000611 INF: FPGA: Recv ZSGSRD 29106
17-03-18 07:11:33.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.204 -07 000000512 INF: FPGA: Recv ZSGSRD 29107
17-03-18 07:11:33.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.214 -07 000000576 INF: FPGA: Recv ZSGSRD 29113
17-03-18 07:11:33.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.224 -07 000000430 INF: FPGA: Recv ZSGSRD 29108
17-03-18 07:11:33.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.234 -07 000000608 INF: FPGA: Recv ZSGSRD 29113
17-03-18 07:11:33.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.244 -07 000000444 INF: FPGA: Recv ZSGSRD 29107
17-03-18 07:11:33.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:33.254 -07 000000541 INF: FPGA: Recv ZPIEZORD 24650
17-03-18 07:11:33.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.264 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.245 V. Piezo Error = -9.8 V.
17-03-18 07:11:33.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29110 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29110 (-126.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29106 (-126.5 uncal um), Max = 29116 (-126.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 07:11:33.264 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29110, posNoise = 6, negNoise = 4
17-03-18 07:11:33.264 -07 000000610 INF: Z Motor: After move to -0.127338, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:33.264 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 106 ms (allowed 150 ms), total time = 1531 ms
17-03-18 07:11:33.264 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 07:11:33.314 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-18 07:11:33.314 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 07:11:33.314 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.127332167457796. ----------
17-03-18 07:11:33.314 -07 000000610 INF: Cycle	158	Tile	19	Exposure Settings		A	476	G	229	T	229	C	476
17-03-18 07:11:33.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27640, sync = True, waitForSettling = True)
17-03-18 07:11:33.314 -07 000000610 INF: Z Motor: Moving to -0.126528 mm, started at -0.127332 mm, distance = 0.80 um
17-03-18 07:11:33.314 -07 000000610 INF: FPGA: Xmit ZDACW 27640\n [Z Motor]
17-03-18 07:11:33.314 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 07:11:33.324 -07 000000610 INF: FPGA: 'ZDACW 27640' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:11:33.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 07:11:33.324 -07 000000430 INF: FPGA: Recv ZDACR 27640
17-03-18 07:11:33.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 07:11:33.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.484 -07 000000626 INF: FPGA: Recv ZSGSRD 28986
17-03-18 07:11:33.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 07:11:33.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.494 -07 000000590 INF: FPGA: Recv ZSGSRD 28978
17-03-18 07:11:33.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.504 -07 000000447 INF: FPGA: Recv ZSGSRD 28991
17-03-18 07:11:33.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.514 -07 000000501 INF: FPGA: Recv ZSGSRD 28993
17-03-18 07:11:33.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.524 -07 000000611 INF: FPGA: Recv ZSGSRD 28981
17-03-18 07:11:33.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.534 -07 000000626 INF: FPGA: Recv ZSGSRD 28984
17-03-18 07:11:33.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.544 -07 000000590 INF: FPGA: Recv ZSGSRD 28987
17-03-18 07:11:33.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.554 -07 000000447 INF: FPGA: Recv ZSGSRD 28988
17-03-18 07:11:33.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.564 -07 000000501 INF: FPGA: Recv ZSGSRD 28983
17-03-18 07:11:33.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 07:11:33.574 -07 000000430 INF: FPGA: Recv ZSGSRD 28981
17-03-18 07:11:33.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 07:11:33.584 -07 000000626 INF: FPGA: Recv ZPIEZORD 24471
17-03-18 07:11:33.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:33.594 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.218 V. Piezo Error = -9.9 V.
17-03-18 07:11:33.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28985 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28985 (-125.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 28978 (-125.7 uncal um), Max = 28993 (-125.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 07:11:33.594 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28985, posNoise = 8, negNoise = 7
17-03-18 07:11:33.594 -07 000000610 INF: Z Motor: After move to -0.126528, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 07:11:33.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 07:11:33.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 07:11:33.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 07:11:33.594 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 07:11:33.594 -07 000000447 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 07:11:33.594 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 07:11:33.594 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 07:11:33.594 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 07:11:33.594 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 07:11:33.594 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 07:11:33.594 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 07:11:33.594 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 07:11:33.594 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 07:11:33.604 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 07:11:33.604 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 07:11:33.604 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 07:11:33.604 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 07:11:33.614 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 07:11:33.614 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 07:11:33.614 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 07:11:33.614 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 07:11:33.624 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 27817 150\n [Camera]
17-03-18 07:11:33.814 -07 000000437 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 07:11:34.294 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 669
17-03-18 07:11:34.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 669
17-03-18 07:11:34.294 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:34.294 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:34.294 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) start.
17-03-18 07:11:34.304 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 669
17-03-18 07:11:34.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 669
17-03-18 07:11:34.304 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:34.304 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:34.304 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 07:11:34.484 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27817 861
17-03-18 07:11:34.634 -07 000000447 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-18 07:11:34.674 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1147047128, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 07:11:34.674 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 07:11:34.674 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:34.674 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 07:11:34.674 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 07:11:34.674 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:34.684 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:11:34.684 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 07:11:34.684 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 07:11:34.694 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 07:11:34.864 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-18 07:11:34.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-18 07:11:34.864 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 07:11:34.874 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-18 07:11:34.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-18 07:11:34.874 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 07:11:34.874 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 07:11:34.874 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) start.
17-03-18 07:11:34.874 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 07:11:34.874 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) start.
17-03-18 07:11:35.054 -07 000000611 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-18 07:11:35.064 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 07:11:35.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 27817 150' command took 2 ms to send, 1430 ms to get response, and 1440 ms overall
17-03-18 07:11:35.254 -07 000000474 INF: Camera: sBCa_ReadImage(785074288, 575218160, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 07:11:35.254 -07 000000474 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 07:11:35.254 -07 000000474 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:35.254 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1111624864, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 07:11:35.254 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 07:11:35.254 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 07:11:35.254 -07 000000474 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:35.254 -07 000000474 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 07:11:35.254 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 07:11:35.254 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 07:11:35.264 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 07:11:35.294 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-18 07:11:35.294 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 07:11:35.334 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 07:11:35.354 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 07:11:35.354 -07 000000610 INF: Imaging Cycle 158: ScanTilesCommand Cycle 158 time end. Duration was 145062 ms.
17-03-18 07:11:35.354 -07 000000610 INF: =================== Cycle #158 ===================
17-03-18 07:11:35.354 -07 000000610 INF: ===================  ===================
17-03-18 07:11:35.354 -07 000000626 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 07:11:35.354 -07 000000447 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 07:11:35.364 -07 000000626 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 07:11:35.364 -07 000000626 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 07:11:35.364 -07 000000626 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.985358, FrontChillerHeatSinkTemperature: 0.390021, AmbientTemperature: 18.76442, FlowCellCompartmentTemperature: 21.98817, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.66922, GreenLEDSensorTemperature: 25.3577, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 07:11:35.364 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 07:11:35.364 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8311 mm, delta = 0.5495 mm
17-03-18 07:11:35.364 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:35.364 -07 000000480 INF: FPGA: Recv YRDPOS 153254
17-03-18 07:11:35.374 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:35.374 -07 000000610 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:35.374 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 07:11:35.374 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 07:11:35.374 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 07:11:35.484 -07 000000576 INF: FPGA: Recv YMVTO 154379 874
17-03-18 07:11:35.484 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 115 ms overall
17-03-18 07:11:35.484 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 07:11:35.484 -07 000000610 INF: Y Motor: To move from 74.831 to 75.381 (0.550 mm) should take 879 steps, but required 874 steps (0.546 mm). Slippage = -0.003 mm (-0.01%).
17-03-18 07:11:35.484 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.550 mm, average velocity = 4.737 mm/sec
17-03-18 07:11:35.944 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.99219,
17-03-18 07:11:36.934 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:11:36.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 158. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2060, R2=2145, Total=4205. Warn if over 250 bubbles per interval.
17-03-18 07:11:38.484 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 07:11:38.484 -07 000000487 INF: FPGA: Recv YRDPOS 154379
17-03-18 07:11:38.494 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 07:11:38.494 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 07:11:38.514 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 07:11:38.514 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 07:11:38.514 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3154 ms
17-03-18 07:11:38.514 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 07:11:38.514 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:11:38.544 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 07:11:38.544 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 07:11:38.544 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 07:11:38.844 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 07:11:38.864 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 07:11:38.864 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 07:11:38.914 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:11:38.934 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 07:11:38.934 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 07:11:39.034 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-18 07:11:39.034 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 07:11:39.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:11:39.064 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 07:11:39.064 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 07:11:39.064 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 07:11:39.194 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 07:11:39.234 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:11:41.304 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 4.02213,
17-03-18 07:11:41.934 -07 000000437 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-18 07:11:41.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 158. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2064, R2=2149, Total=4213. Warn if over 250 bubbles per interval.
17-03-18 07:11:42.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:11:42.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:11:42.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:11:42.844 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:11:43.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:11:43.294 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:11:43.294 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 07:11:43.294 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-18 07:11:43.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:11:43.454 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 07:11:43.454 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 07:11:43.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:11:43.614 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 07:11:43.614 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 07:11:43.614 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 07:11:43.744 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 07:11:43.774 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:11:44.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:11:44.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:11:44.234 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 07:11:44.234 -07 000000610 INF: ===================  ===================
17-03-18 07:11:44.334 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 07:11:44.334 -07 000000610 INF: Y Motor: No move required, already at target position
17-03-18 07:11:45.454 -07 000000610 INF: AsyncDelayTimer waited 1111ms
17-03-18 07:11:45.454 -07 000000610 INF: ReagentValve: Go to position 17 - PumpToFlowcell start
17-03-18 07:11:45.454 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:11:45.474 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 07:11:45.474 -07 000000610 INF: ReagentValve: Taking longest path '+' from 3 to 17 to avoid 18. Moving 14 positions.
17-03-18 07:11:45.474 -07 000000610 INF: ReagentValve: Xmit +11\r
17-03-18 07:11:46.604 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 07:11:46.624 -07 000000610 INF: ReagentValve: Recv 0B28\r
17-03-18 07:11:46.624 -07 000000610 INF: ReagentValve: Move+ from 3 to 17 took 2856 steps, expected 2858. Error = -2 steps (-0.1%)
17-03-18 07:11:46.664 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.986717,
17-03-18 07:11:46.674 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 07:11:46.694 -07 000000610 INF: ReagentValve: Recv 11\r
17-03-18 07:11:46.694 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 07:11:46.794 -07 000000610 INF: =================== Pumping Reagent TMP (17) ===================
17-03-18 07:11:46.794 -07 000000610 INF: LanePump: Pumping from 17, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 500 µL, calling command Pumping to Flow Cell #1
17-03-18 07:11:46.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:11:46.824 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 07:11:46.824 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 07:11:46.934 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 07:11:46.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 158. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2065, R2=2149, Total=4214. Warn if over 250 bubbles per interval.
17-03-18 07:11:46.954 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:11:46.984 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 07:11:46.984 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 07:11:51.154 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:11:51.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:11:51.184 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-18 07:11:51.314 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-18 07:11:51.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 07:11:51.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 07:11:51.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 07:11:51.804 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 07:11:51.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 07:11:51.934 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 07:11:51.934 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 158. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=2065, R2=2149, Total=4214. Warn if over 250 bubbles per interval.
17-03-18 07:11:51.964 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 07:11:51.964 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 07:11:52.024 -07 000000447 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 158, FrontChillerTemperature: 3.993549,
17-03-18 07:11:52.094 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-18 07:11:52.134 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n